AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0880460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0880460 MtrunA17_Chr8g0386241 93.923 181 10 1 1 180 1 181 6.65e-124 347
Msa0880460 MtrunA17_Chr7g0224801 70.732 82 24 0 90 171 81 162 1.30e-41 137
Msa0880460 MtrunA17_Chr7g0248721 54.369 103 43 2 73 172 109 210 1.15e-30 111
Msa0880460 MtrunA17_Chr1g0150801 54.217 83 38 0 77 159 77 159 6.04e-29 105
Msa0880460 MtrunA17_Chr7g0218081 54.762 84 38 0 83 166 391 474 2.09e-27 107
Msa0880460 MtrunA17_Chr7g0218081 52.632 57 26 1 102 158 228 283 1.32e-15 73.9
Msa0880460 MtrunA17_Chr5g0418191 49.451 91 46 0 83 173 301 391 7.86e-27 105
Msa0880460 MtrunA17_Chr5g0418191 45.570 79 41 2 102 179 151 228 3.35e-14 69.7
Msa0880460 MtrunA17_Chr8g0335811 46.535 101 53 1 75 174 127 227 1.05e-26 101
Msa0880460 MtrunA17_Chr5g0445311 55.952 84 37 0 83 166 345 428 2.15e-26 104
Msa0880460 MtrunA17_Chr5g0445311 56.897 58 24 1 102 159 200 256 1.26e-16 77.0
Msa0880460 MtrunA17_Chr2g0294231 57.746 71 30 0 89 159 190 260 2.20e-26 103
Msa0880460 MtrunA17_Chr3g0106491 57.500 80 34 0 81 160 344 423 2.74e-26 104
Msa0880460 MtrunA17_Chr3g0106491 40.909 110 58 3 54 159 148 254 6.09e-19 83.6
Msa0880460 MtrunA17_Chr4g0004911 47.706 109 57 0 78 186 312 420 3.30e-26 103
Msa0880460 MtrunA17_Chr4g0004911 49.231 65 33 0 95 159 177 241 9.63e-16 74.3
Msa0880460 MtrunA17_Chr5g0418781 52.439 82 39 0 77 158 99 180 6.06e-26 100
Msa0880460 MtrunA17_Chr3g0101131 57.692 78 33 0 83 160 396 473 1.03e-25 103
Msa0880460 MtrunA17_Chr3g0101131 53.030 66 30 1 102 167 243 307 1.22e-17 79.7
Msa0880460 MtrunA17_Chr4g0042831 55.128 78 35 0 83 160 259 336 1.44e-25 101
Msa0880460 MtrunA17_Chr4g0042831 54.386 57 26 0 102 158 145 201 7.58e-16 74.3
Msa0880460 MtrunA17_Chr1g0194481 48.889 90 45 1 71 159 126 215 2.46e-25 99.8
Msa0880460 MtrunA17_Chr4g0051881 45.918 98 51 1 89 186 165 260 2.66e-25 99.8
Msa0880460 MtrunA17_Chr5g0432161 54.762 84 38 0 77 160 396 479 2.70e-25 102
Msa0880460 MtrunA17_Chr5g0432161 56.897 58 24 1 102 159 244 300 2.77e-16 75.9
Msa0880460 MtrunA17_Chr7g0243891 48.000 100 49 2 83 180 355 453 3.22e-25 101
Msa0880460 MtrunA17_Chr7g0243891 40.000 85 50 1 102 186 216 299 6.40e-15 72.0
Msa0880460 MtrunA17_Chr3g0129361 47.312 93 47 2 85 175 127 219 9.77e-25 95.9
Msa0880460 MtrunA17_Chr3g0079691 48.544 103 51 1 66 166 457 559 1.04e-24 100
Msa0880460 MtrunA17_Chr3g0079691 37.069 116 60 5 53 159 225 336 9.94e-16 74.3
Msa0880460 MtrunA17_Chr7g0270191 36.196 163 85 4 13 159 43 202 1.08e-24 97.4
Msa0880460 MtrunA17_Chr8g0383351 44.565 92 50 1 85 175 142 233 1.11e-24 96.3
Msa0880460 MtrunA17_Chr4g0068541 57.143 70 30 0 89 158 195 264 1.42e-24 99.0
Msa0880460 MtrunA17_Chr7g0249311 47.115 104 53 2 83 185 373 475 9.89e-24 97.4
Msa0880460 MtrunA17_Chr7g0249311 35.484 155 67 6 39 182 130 262 7.18e-16 74.7
Msa0880460 MtrunA17_Chr3g0129321 52.857 70 33 0 89 158 105 174 2.49e-23 92.0
Msa0880460 MtrunA17_Chr7g0249301 52.564 78 37 0 83 160 273 350 8.65e-23 93.6
Msa0880460 MtrunA17_Chr7g0249301 39.773 88 47 2 101 183 61 147 4.42e-14 69.3
Msa0880460 MtrunA17_Chr5g0443131 54.286 70 32 0 89 158 144 213 1.97e-22 91.7
Msa0880460 MtrunA17_Chr7g0270831 45.122 82 44 1 87 167 201 282 2.19e-21 90.1
Msa0880460 MtrunA17_Chr8g0383251 37.398 123 66 2 38 160 55 166 2.52e-21 86.3
Msa0880460 MtrunA17_Chr4g0075201 46.835 79 41 1 87 164 252 330 3.73e-21 89.7
Msa0880460 MtrunA17_Chr2g0288871 46.753 77 40 1 85 160 288 364 9.09e-21 89.0
Msa0880460 MtrunA17_Chr5g0447701 42.045 88 49 1 73 158 221 308 2.22e-20 87.0
Msa0880460 MtrunA17_Chr5g0447701 48.438 64 32 1 100 163 90 152 6.57e-13 65.9
Msa0880460 MtrunA17_Chr3g0099641 44.048 84 46 1 85 167 234 317 5.39e-20 86.7
Msa0880460 MtrunA17_Chr2g0322391 41.758 91 52 1 75 164 322 412 1.45e-19 85.5
Msa0880460 MtrunA17_Chr7g0263531 51.471 68 33 0 91 158 350 417 1.08e-18 82.8
Msa0880460 MtrunA17_Chr7g0263531 55.357 56 24 1 103 158 190 244 1.10e-15 73.9
Msa0880460 MtrunA17_Chr4g0025051 45.122 82 44 1 87 167 320 401 1.34e-18 82.8
Msa0880460 MtrunA17_Chr2g0333851 46.154 78 41 1 100 176 167 244 1.52e-18 81.3
Msa0880460 MtrunA17_Chr4g0025061 44.444 81 44 1 85 164 343 423 1.91e-18 82.4
Msa0880460 MtrunA17_Chr1g0188941 47.143 70 37 0 91 160 40 109 2.17e-18 76.6
Msa0880460 MtrunA17_Chr4g0074001 46.154 78 40 1 87 162 344 421 5.76e-18 80.9
Msa0880460 MtrunA17_Chr7g0216891 33.758 157 84 6 31 167 129 285 6.70e-18 80.5
Msa0880460 MtrunA17_Chr3g0136961 54.386 57 25 1 103 158 139 195 7.95e-18 79.0
Msa0880460 MtrunA17_Chr7g0238921 52.632 57 27 0 102 158 124 180 1.23e-17 79.0
Msa0880460 MtrunA17_Chr4g0051181 45.333 75 40 1 87 160 228 302 1.99e-17 79.3
Msa0880460 MtrunA17_Chr1g0189391 50.000 72 35 1 88 158 83 154 2.18e-17 78.2
Msa0880460 MtrunA17_Chr2g0302391 37.864 103 60 2 63 164 175 274 8.89e-17 77.0
Msa0880460 MtrunA17_Chr4g0001361 47.059 68 35 1 100 166 160 227 1.46e-16 75.9
Msa0880460 MtrunA17_Chr4g0060271 43.836 73 40 1 87 158 240 312 5.59e-16 75.1
Msa0880460 MtrunA17_Chr6g0485431 43.662 71 39 1 89 158 141 211 2.83e-15 72.8
Msa0880460 MtrunA17_Chr1g0150281 46.774 62 32 1 103 163 141 202 3.19e-15 72.0
Msa0880460 MtrunA17_Chr5g0447711 44.118 68 38 0 91 158 219 286 3.34e-15 72.0
Msa0880460 MtrunA17_Chr1g0147881 41.176 68 39 1 99 165 259 326 4.71e-14 68.9
Msa0880460 MtrunA17_Chr4g0071521 45.902 61 32 1 99 158 242 302 5.75e-14 68.6
Msa0880460 MtrunA17_Chr8g0347251 47.458 59 28 1 101 156 135 193 1.06e-13 68.2
Msa0880460 MtrunA17_Chr1g0150271 43.548 62 34 1 100 160 99 160 1.22e-13 67.0
Msa0880460 MtrunA17_Chr4g0024391 32.727 110 72 2 62 169 188 297 2.01e-13 67.8
Msa0880460 MtrunA17_Chr7g0244981 36.607 112 64 4 52 156 68 179 2.43e-13 66.6
Msa0880460 MtrunA17_Chr3g0126391 47.458 59 28 1 101 156 132 190 2.50e-13 67.0
Msa0880460 MtrunA17_Chr7g0275531 47.458 59 28 1 101 156 117 175 3.44e-13 66.6
Msa0880460 MtrunA17_Chr5g0432071 50.877 57 27 1 102 158 104 159 3.87e-13 65.1
Msa0880460 MtrunA17_Chr7g0244971 36.066 122 70 5 52 165 68 189 4.56e-13 65.9
Msa0880460 MtrunA17_Chr8g0387981 32.558 129 75 4 36 156 65 189 1.01e-12 65.5
Msa0880460 MtrunA17_Chr4g0053281 40.541 74 42 2 99 171 263 335 1.39e-12 64.7
Msa0880460 MtrunA17_Chr7g0270051 46.552 58 30 1 103 159 54 111 2.26e-12 63.5
Msa0880460 MtrunA17_Chr8g0348311 36.842 76 46 2 86 160 140 214 4.86e-12 63.2
Msa0880460 MtrunA17_Chr5g0401821 44.262 61 33 1 99 158 196 256 1.09e-11 62.0
Msa0880460 MtrunA17_Chr2g0315361 32.540 126 76 3 35 156 85 205 1.39e-11 62.0
Msa0880460 MtrunA17_Chr8g0387501 45.000 60 32 1 101 159 128 187 1.45e-11 61.6
Msa0880460 MtrunA17_Chr1g0184691 42.623 61 34 1 99 158 290 350 6.18e-11 60.1
Msa0880460 MtrunA17_Chr2g0293481 39.344 61 36 1 100 159 265 325 7.51e-11 60.1
Msa0880460 MtrunA17_Chr5g0428351 42.105 57 30 1 103 156 184 240 1.00e-10 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0880460 AT5G13080.1 70.238 84 25 0 88 171 53 136 7.02e-42 138
Msa0880460 AT3G01970.1 67.470 83 27 0 89 171 52 134 8.38e-38 127
Msa0880460 AT1G64000.1 55.789 95 42 0 80 174 92 186 1.84e-34 120
Msa0880460 AT5G41570.1 59.302 86 35 0 89 174 85 170 2.21e-32 115
Msa0880460 AT2G46130.1 52.809 89 42 0 83 171 11 99 1.94e-30 107
Msa0880460 AT5G49520.1 59.155 71 29 0 89 159 208 278 1.12e-26 104
Msa0880460 AT2G30250.1 58.974 78 32 0 83 160 309 386 1.21e-26 104
Msa0880460 AT2G30250.1 35.200 125 63 3 43 159 108 222 1.59e-13 68.2
Msa0880460 AT5G64810.1 51.111 90 39 1 74 158 77 166 1.67e-26 100
Msa0880460 AT1G69310.4 52.500 80 38 0 79 158 124 203 2.97e-26 102
Msa0880460 AT1G69310.2 52.500 80 38 0 79 158 124 203 2.97e-26 102
Msa0880460 AT1G69310.1 52.500 80 38 0 79 158 124 203 2.97e-26 102
Msa0880460 AT4G26640.5 55.952 84 37 0 83 166 186 269 4.49e-26 103
Msa0880460 AT4G26640.5 55.000 60 26 1 100 159 33 91 1.07e-16 77.0
Msa0880460 AT4G26640.6 55.952 84 37 0 83 166 186 269 4.49e-26 103
Msa0880460 AT4G26640.6 55.000 60 26 1 100 159 33 91 1.07e-16 77.0
Msa0880460 AT4G26640.4 55.952 84 37 0 83 166 186 269 4.49e-26 103
Msa0880460 AT4G26640.4 55.000 60 26 1 100 159 33 91 1.07e-16 77.0
Msa0880460 AT4G26640.3 55.952 84 37 0 83 166 186 269 4.49e-26 103
Msa0880460 AT4G26640.3 55.000 60 26 1 100 159 33 91 1.07e-16 77.0
Msa0880460 AT4G26640.7 55.952 84 37 0 83 166 322 405 4.66e-26 104
Msa0880460 AT4G26640.7 55.000 60 26 1 100 159 169 227 8.07e-17 77.8
Msa0880460 AT4G26640.1 55.952 84 37 0 83 166 290 373 6.18e-26 103
Msa0880460 AT4G26640.1 55.000 60 26 1 100 159 137 195 1.00e-16 77.4
Msa0880460 AT4G26640.2 55.952 84 37 0 83 166 362 445 6.30e-26 103
Msa0880460 AT4G26640.2 55.000 60 26 1 100 159 209 267 8.78e-17 77.8
Msa0880460 AT2G44745.1 46.237 93 49 1 83 174 126 218 9.35e-26 99.0
Msa0880460 AT1G13960.1 52.632 76 36 0 83 158 390 465 1.11e-25 103
Msa0880460 AT1G13960.1 41.071 112 58 4 48 158 180 284 1.06e-18 83.2
Msa0880460 AT1G13960.2 52.632 76 36 0 83 158 237 312 1.24e-25 101
Msa0880460 AT1G13960.2 36.641 131 73 5 29 158 10 131 2.36e-18 81.6
Msa0880460 AT5G07100.2 44.444 117 58 1 44 160 90 199 1.54e-25 98.6
Msa0880460 AT5G07100.2 46.875 64 34 0 102 165 24 87 1.52e-14 69.3
Msa0880460 AT5G07100.4 44.444 117 58 1 44 160 90 199 1.54e-25 98.6
Msa0880460 AT5G07100.4 46.875 64 34 0 102 165 24 87 1.52e-14 69.3
Msa0880460 AT5G07100.5 44.444 117 58 1 44 160 90 199 1.54e-25 98.6
Msa0880460 AT5G07100.5 46.875 64 34 0 102 165 24 87 1.52e-14 69.3
Msa0880460 AT5G07100.3 44.444 117 58 1 44 160 90 199 1.54e-25 98.6
Msa0880460 AT5G07100.3 46.875 64 34 0 102 165 24 87 1.52e-14 69.3
Msa0880460 AT2G46130.2 49.438 89 41 1 83 171 11 95 1.72e-25 95.1
Msa0880460 AT2G03340.1 45.000 100 55 0 83 182 396 495 2.14e-25 102
Msa0880460 AT2G03340.1 39.231 130 64 4 60 182 214 335 5.93e-18 81.3
Msa0880460 AT5G26170.1 55.714 70 31 0 89 158 100 169 2.44e-25 96.7
Msa0880460 AT4G39410.1 49.367 79 40 0 80 158 201 279 3.76e-25 99.4
Msa0880460 AT5G07100.1 45.217 115 56 1 44 158 183 290 4.96e-25 99.0
Msa0880460 AT5G07100.1 46.875 64 34 0 102 165 117 180 1.11e-14 70.9
Msa0880460 AT2G38470.1 46.903 113 49 1 59 160 308 420 7.54e-25 100
Msa0880460 AT2G38470.1 51.724 58 27 1 102 159 184 240 1.14e-14 71.6
Msa0880460 AT5G56270.1 57.692 78 33 0 83 160 468 545 9.42e-25 100
Msa0880460 AT5G56270.1 50.877 57 27 1 102 158 273 328 6.25e-15 72.4
Msa0880460 AT3G01080.2 53.846 78 36 0 83 160 325 402 1.43e-24 99.8
Msa0880460 AT3G01080.2 52.632 57 26 1 102 158 205 260 6.70e-15 72.4
Msa0880460 AT3G01080.1 53.846 78 36 0 83 160 287 364 1.86e-24 99.0
Msa0880460 AT3G01080.1 52.632 57 26 1 102 158 167 222 8.29e-15 72.0
Msa0880460 AT1G29860.1 54.167 72 33 0 89 160 123 194 6.00e-24 95.9
Msa0880460 AT2G47260.1 48.864 88 44 1 72 158 143 230 7.83e-24 96.3
Msa0880460 AT4G18170.1 56.522 69 30 0 92 160 162 230 1.14e-23 95.5
Msa0880460 AT4G26440.1 47.170 106 53 1 64 166 331 436 1.06e-22 94.7
Msa0880460 AT4G26440.1 52.632 57 26 1 102 158 178 233 1.65e-16 77.0
Msa0880460 AT5G46350.1 53.623 69 32 0 92 160 173 241 1.52e-22 92.8
Msa0880460 AT3G62340.1 56.338 71 31 0 89 159 105 175 5.54e-22 90.5
Msa0880460 AT4G04450.2 45.455 88 46 2 79 164 174 261 2.49e-21 90.5
Msa0880460 AT1G69310.3 48.750 80 37 1 79 158 124 199 2.76e-21 88.6
Msa0880460 AT4G04450.1 45.455 88 46 2 79 164 268 355 9.10e-21 89.4
Msa0880460 AT2G04880.2 51.429 70 34 0 89 158 270 339 4.33e-20 87.0
Msa0880460 AT2G04880.2 56.667 60 25 1 100 159 109 167 1.88e-17 79.7
Msa0880460 AT2G04880.1 38.739 111 54 1 48 158 267 363 5.03e-20 87.0
Msa0880460 AT2G04880.1 56.667 60 25 1 100 159 109 167 2.13e-17 79.3
Msa0880460 AT1G62300.1 43.333 90 50 1 72 160 282 371 6.04e-20 87.0
Msa0880460 AT4G22070.4 48.000 75 38 1 87 160 282 356 1.01e-19 86.3
Msa0880460 AT4G22070.3 48.000 75 38 1 87 160 282 356 1.01e-19 86.3
Msa0880460 AT4G22070.2 48.000 75 38 1 87 160 282 356 1.01e-19 86.3
Msa0880460 AT4G22070.1 48.000 75 38 1 87 160 282 356 1.01e-19 86.3
Msa0880460 AT2G21900.1 49.315 73 34 1 90 159 94 166 2.35e-19 82.0
Msa0880460 AT2G37260.2 51.471 68 33 0 91 158 256 323 2.65e-19 84.0
Msa0880460 AT2G37260.2 55.357 56 24 1 103 158 84 138 8.83e-14 68.6
Msa0880460 AT2G37260.3 51.471 68 33 0 91 158 258 325 2.67e-19 84.3
Msa0880460 AT2G37260.3 55.357 56 24 1 103 158 86 140 8.73e-14 68.6
Msa0880460 AT1G55600.1 45.349 86 46 1 75 159 279 364 3.23e-19 84.7
Msa0880460 AT2G37260.1 51.471 68 33 0 91 158 338 405 3.29e-19 84.3
Msa0880460 AT2G37260.1 55.357 56 24 1 103 158 166 220 7.59e-14 69.3
Msa0880460 AT4G01720.1 48.000 75 38 1 87 160 224 298 3.32e-19 84.7
Msa0880460 AT4G30935.1 44.211 95 51 1 70 162 299 393 9.57e-19 83.2
Msa0880460 AT5G15130.2 40.476 84 49 1 85 167 168 251 6.93e-18 80.9
Msa0880460 AT5G15130.1 41.975 81 46 1 85 164 210 290 1.07e-17 80.5
Msa0880460 AT1G68150.1 41.304 92 50 2 77 167 213 301 1.69e-17 79.3
Msa0880460 AT1G18860.1 42.857 77 43 1 85 160 222 298 3.20e-17 79.0
Msa0880460 AT1G80840.1 42.105 76 43 1 100 174 144 219 6.23e-17 77.0
Msa0880460 AT5G24110.1 50.847 59 26 1 101 156 112 170 2.38e-16 75.5
Msa0880460 AT4G31800.2 49.123 57 28 1 103 158 112 168 5.20e-16 73.9
Msa0880460 AT4G31800.1 49.123 57 28 1 103 158 177 233 8.80e-16 73.9
Msa0880460 AT3G01080.3 52.632 57 26 1 102 158 205 260 3.01e-15 72.8
Msa0880460 AT2G25000.2 47.368 57 29 1 103 158 104 160 5.82e-15 70.9
Msa0880460 AT2G25000.4 47.368 57 29 1 103 158 104 160 5.82e-15 70.9
Msa0880460 AT2G25000.3 47.368 57 29 1 103 158 126 182 7.75e-15 70.9
Msa0880460 AT5G43290.1 49.153 59 30 0 100 158 112 170 9.57e-15 70.9
Msa0880460 AT2G25000.1 47.368 57 29 1 103 158 147 203 1.17e-14 70.5
Msa0880460 AT4G11070.1 30.263 152 94 5 15 156 49 198 4.67e-14 69.3
Msa0880460 AT4G12020.10 53.448 58 26 1 101 158 467 523 7.02e-14 69.7
Msa0880460 AT4G12020.3 53.448 58 26 1 101 158 467 523 7.09e-14 69.7
Msa0880460 AT4G12020.2 53.448 58 26 1 101 158 467 523 7.30e-14 69.7
Msa0880460 AT4G12020.6 53.448 58 26 1 101 158 467 523 7.34e-14 69.7
Msa0880460 AT4G12020.8 53.448 58 26 1 101 158 467 523 7.34e-14 69.7
Msa0880460 AT4G12020.1 53.448 58 26 1 101 158 467 523 7.42e-14 69.7
Msa0880460 AT4G12020.9 53.448 58 26 1 101 158 467 523 7.42e-14 69.7
Msa0880460 AT4G12020.4 53.448 58 26 1 101 158 467 523 7.51e-14 69.7
Msa0880460 AT4G12020.7 53.448 58 26 1 101 158 467 523 7.63e-14 69.3
Msa0880460 AT4G12020.5 53.448 58 26 1 101 158 400 456 7.64e-14 69.3
Msa0880460 AT1G69810.2 46.970 66 33 2 101 164 144 209 1.16e-13 68.2
Msa0880460 AT4G12020.11 53.448 58 26 1 101 158 467 523 1.17e-13 68.9
Msa0880460 AT1G69810.1 48.387 62 30 2 101 160 202 263 1.46e-13 68.2
Msa0880460 AT4G11070.2 30.935 139 85 4 28 156 29 166 1.99e-13 67.4
Msa0880460 AT4G23810.1 51.724 58 25 1 102 156 158 215 4.14e-13 66.6
Msa0880460 AT3G56400.1 30.137 146 92 3 38 173 55 200 4.32e-13 66.2
Msa0880460 AT5G01900.1 41.333 75 41 1 96 167 104 178 8.05e-13 65.5
Msa0880460 AT4G31550.1 45.902 61 32 1 99 158 243 303 8.75e-13 65.9
Msa0880460 AT4G31550.2 45.902 61 32 1 99 158 242 302 8.79e-13 65.9
Msa0880460 AT2G24570.1 45.902 61 32 1 99 158 240 300 1.44e-12 65.1
Msa0880460 AT5G45260.1 35.955 89 50 3 98 181 1202 1288 1.57e-12 65.5
Msa0880460 AT4G24240.1 45.902 61 32 1 99 158 278 338 1.59e-12 65.1
Msa0880460 AT2G30590.1 43.548 62 34 1 99 159 310 371 2.13e-12 64.7
Msa0880460 AT2G40750.1 36.957 92 46 3 90 169 135 226 2.14e-12 64.7
Msa0880460 AT2G23320.1 42.623 61 34 1 99 158 237 297 4.22e-12 63.9
Msa0880460 AT5G52830.1 36.709 79 49 1 96 173 159 237 6.54e-12 63.5
Msa0880460 AT4G01250.1 36.842 76 46 2 86 160 113 187 1.26e-11 62.4
Msa0880460 AT1G30650.1 33.010 103 64 4 60 159 175 275 1.42e-11 62.8
Msa0880460 AT4G23550.1 35.616 73 46 1 87 158 125 197 2.18e-11 61.6
Msa0880460 AT1G66560.1 44.068 59 30 1 102 157 103 161 2.37e-11 61.2
Msa0880460 AT2G34830.1 36.620 71 43 2 91 159 203 273 3.58e-11 61.2
Msa0880460 AT2G40740.1 44.828 58 29 1 102 156 173 230 3.64e-11 60.8
Msa0880460 AT2G40740.3 44.828 58 29 1 102 156 182 239 3.86e-11 60.8
Msa0880460 AT1G29280.1 41.379 58 33 1 103 159 75 132 4.04e-11 60.5
Msa0880460 AT2G34830.2 36.620 71 43 2 91 159 212 282 4.37e-11 61.2
Msa0880460 AT5G28650.1 42.623 61 34 1 99 158 259 319 5.97e-11 60.5

Find 58 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTTCTTTGCCTCCTTTC+TGG 0.072162 6_1:+27061121 None:intergenic
TTGAAATTCATTGAATATTA+TGG 0.088685 6_1:-27061607 Msa0880460:five_prime_UTR
CTCCTCCAGTACATCGATTT+TGG 0.140480 6_1:-27061637 Msa0880460:five_prime_UTR
TTAGTTGGTTTAACATTAAA+AGG 0.235904 6_1:+27061204 None:intergenic
TATGCATGTGTCGTATATAA+TGG 0.254604 6_1:+27061328 None:intergenic
TTCCACGACCTGCTCATCTT+TGG 0.291905 6_1:+27060509 None:intergenic
TGAAATTCATTGAATATTAT+GGG 0.294072 6_1:-27061606 Msa0880460:five_prime_UTR
GCTCATCTTTGGAGTGCCTT+TGG 0.299734 6_1:+27060520 None:intergenic
GGTTTCCGGTGGAGAAAGTA+TGG 0.301787 6_1:-27061045 Msa0880460:CDS
ATATACTAGATGATGGTTTC+CGG 0.316230 6_1:-27061059 Msa0880460:CDS
GCATATGGTGAAGATGAGAT+AGG 0.329659 6_1:+27061231 None:intergenic
TTTAATGTTAAACCAACTAA+TGG 0.357254 6_1:-27061201 Msa0880460:CDS
TAAAATTGAAACTACTATAA+TGG 0.364418 6_1:-27061550 Msa0880460:five_prime_UTR
GTTGCGAAATGGTTCGGATT+CGG 0.377695 6_1:-27060252 Msa0880460:three_prime_UTR
CTTTCAGCTGACTTCTCTAC+AGG 0.394519 6_1:+27060459 None:intergenic
TCAAGAAAATAAATAAACTA+TGG 0.398587 6_1:+27061522 None:intergenic
CCATAACCATAAAAGTGAAT+TGG 0.401493 6_1:+27060324 None:intergenic
ATGCATGTGTCGTATATAAT+GGG 0.406992 6_1:+27061329 None:intergenic
TAAATCCAAAATCGATGTAC+TGG 0.419447 6_1:+27061632 None:intergenic
GGTTCTAAGATCAAATGGTT+TGG 0.427691 6_1:+27060293 None:intergenic
TGAATATTAGAGCCATTAGT+TGG 0.435523 6_1:+27061189 None:intergenic
TAATGAAGTTTCTCAAGATC+TGG 0.441173 6_1:+27060430 None:intergenic
ACATTAAAAGGTGAAGCATA+TGG 0.441902 6_1:+27061216 None:intergenic
AACCACTTCTCACAACAAAC+TGG 0.443186 6_1:+27060272 None:intergenic
AAACTGGTTCTAAGATCAAA+TGG 0.454910 6_1:+27060288 None:intergenic
TTCACGTGATTTAGTTAAGC+AGG 0.468121 6_1:+27060347 None:intergenic
AACACTTCATGTTTCTCCAT+TGG 0.474081 6_1:+27061258 None:intergenic
CATATGGTGAAGATGAGATA+GGG 0.480605 6_1:+27061232 None:intergenic
GAAGTGGTTGCGAAATGGTT+CGG 0.491170 6_1:-27060258 Msa0880460:three_prime_UTR
CAGATTGATATACTAGATGA+TGG 0.495665 6_1:-27061066 Msa0880460:CDS
TCTTATTACTTCAAAACCAA+TGG 0.501778 6_1:-27061274 Msa0880460:CDS
TACTACAAATGCACTTATGA+AGG 0.510375 6_1:-27060564 Msa0880460:CDS
TATTTAAAATAATGTTACAT+TGG 0.512653 6_1:+27060381 None:intergenic
CTCCAAAGATGAGCAGGTCG+TGG 0.520505 6_1:-27060511 Msa0880460:CDS
GAAACATGTGGGCGGCAAGA+AGG 0.521155 6_1:+27061393 None:intergenic
TTTCCCCATACTTTCTCCAC+CGG 0.530517 6_1:+27061040 None:intergenic
AAGGAGACTTCAAGCCAGAA+AGG 0.533731 6_1:-27061135 Msa0880460:CDS
TGTGAGAAGTGGTTGCGAAA+TGG 0.540802 6_1:-27060263 Msa0880460:three_prime_UTR
GTCGTGGAAACAACTTATGA+AGG 0.541326 6_1:-27060495 Msa0880460:CDS
AAGGCACTCCAAAGATGAGC+AGG 0.544902 6_1:-27060517 Msa0880460:CDS
AACCAGTTTGTTGTGAGAAG+TGG 0.546810 6_1:-27060274 Msa0880460:three_prime_UTR
GAGAAAGTATGGGGAAAAGA+TGG 0.549845 6_1:-27061034 Msa0880460:CDS
TGAACTTCATGCGTGAAACA+TGG 0.562698 6_1:+27061473 None:intergenic
ATCCAAAATCGATGTACTGG+AGG 0.586139 6_1:+27061635 None:intergenic
GTTTCCGGTGGAGAAAGTAT+GGG 0.605222 6_1:-27061044 Msa0880460:CDS
TGAAAGACAACAAATTCCCT+AGG 0.608578 6_1:-27061011 Msa0880460:intron
GGCAAGAAGGTCAATATGTG+TGG 0.616959 6_1:+27061406 None:intergenic
TAAGGAGATGATGAAACATG+TGG 0.619264 6_1:+27061381 None:intergenic
TCGTGGAAACAACTTATGAA+GGG 0.629334 6_1:-27060494 Msa0880460:CDS
TACTAGATGATGGTTTCCGG+TGG 0.631774 6_1:-27061056 Msa0880460:CDS
ATGCACTTATGAAGGCTGCA+AGG 0.637608 6_1:-27060556 Msa0880460:CDS
GAGACTTCAAGCCAGAAAGG+AGG 0.650325 6_1:-27061132 Msa0880460:CDS
AGGTAAAGAAACAAATCCAA+AGG 0.652137 6_1:-27060536 Msa0880460:CDS
TTTCCGGTGGAGAAAGTATG+GGG 0.671158 6_1:-27061043 Msa0880460:CDS
TTTCAGCTGACTTCTCTACA+GGG 0.671245 6_1:+27060460 None:intergenic
AAGGAGATGATGAAACATGT+GGG 0.673240 6_1:+27061382 None:intergenic
ACAAATATGTATTTCAAACG+AGG 0.693150 6_1:-27061092 Msa0880460:CDS
GAGATGATGAAACATGTGGG+CGG 0.727471 6_1:+27061385 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTAAAATAATGTTACAT+TGG + chr6_1:27061458-27061477 None:intergenic 10.0%
!!! TGTAACATTATTTTAAATAT+TGG - chr6_1:27061459-27061478 Msa0880460:five_prime_UTR 10.0%
!!! TATTTAAAATAATGTTACAT+TGG + chr6_1:27061458-27061477 None:intergenic 10.0%
!!! TGTAACATTATTTTAAATAT+TGG - chr6_1:27061459-27061478 Msa0880460:five_prime_UTR 10.0%
!! TTGAAATTCATTGAATATTA+TGG - chr6_1:27060229-27060248 Msa0880460:three_prime_UTR 15.0%
!! TGAAATTCATTGAATATTAT+GGG - chr6_1:27060230-27060249 Msa0880460:three_prime_UTR 15.0%
!! TAAAATTGAAACTACTATAA+TGG - chr6_1:27060286-27060305 Msa0880460:three_prime_UTR 15.0%
!! TCAAGAAAATAAATAAACTA+TGG + chr6_1:27060317-27060336 None:intergenic 15.0%
!! AGAATATCTAAAAACTAAAA+AGG - chr6_1:27060682-27060701 Msa0880460:intron 15.0%
!! TTGAAATTCATTGAATATTA+TGG - chr6_1:27060229-27060248 Msa0880460:three_prime_UTR 15.0%
!! TGAAATTCATTGAATATTAT+GGG - chr6_1:27060230-27060249 Msa0880460:three_prime_UTR 15.0%
!! TAAAATTGAAACTACTATAA+TGG - chr6_1:27060286-27060305 Msa0880460:three_prime_UTR 15.0%
!! TCAAGAAAATAAATAAACTA+TGG + chr6_1:27060317-27060336 None:intergenic 15.0%
!! AGAATATCTAAAAACTAAAA+AGG - chr6_1:27060682-27060701 Msa0880460:intron 15.0%
!!! TTAGTTGGTTTAACATTAAA+AGG + chr6_1:27060635-27060654 None:intergenic 20.0%
!! TTTAATGTTAAACCAACTAA+TGG - chr6_1:27060635-27060654 Msa0880460:intron 20.0%
!! TTTCTAGATAGAATAATTCT+TGG + chr6_1:27060962-27060981 None:intergenic 20.0%
!!! TTAGTTGGTTTAACATTAAA+AGG + chr6_1:27060635-27060654 None:intergenic 20.0%
!! TTTAATGTTAAACCAACTAA+TGG - chr6_1:27060635-27060654 Msa0880460:intron 20.0%
!! TTTCTAGATAGAATAATTCT+TGG + chr6_1:27060962-27060981 None:intergenic 20.0%
!!! TGGTTTTGAAGTAATAAGAA+AGG + chr6_1:27060561-27060580 None:intergenic 25.0%
! TCTTATTACTTCAAAACCAA+TGG - chr6_1:27060562-27060581 Msa0880460:CDS 25.0%
! ACAAATATGTATTTCAAACG+AGG - chr6_1:27060744-27060763 Msa0880460:intron 25.0%
!!! TATTTTTTGTGTTAACTCTC+CGG - chr6_1:27060876-27060895 Msa0880460:intron 25.0%
! ACAAAAATTAAACAAGGTCA+GGG + chr6_1:27061224-27061243 None:intergenic 25.0%
! AACAAAAATTAAACAAGGTC+AGG + chr6_1:27061225-27061244 None:intergenic 25.0%
! GTTGGAACAAAAATTAAACA+AGG + chr6_1:27061230-27061249 None:intergenic 25.0%
!!! TGGTTTTGAAGTAATAAGAA+AGG + chr6_1:27060561-27060580 None:intergenic 25.0%
! TCTTATTACTTCAAAACCAA+TGG - chr6_1:27060562-27060581 Msa0880460:CDS 25.0%
! ACAAATATGTATTTCAAACG+AGG - chr6_1:27060744-27060763 Msa0880460:intron 25.0%
!!! TATTTTTTGTGTTAACTCTC+CGG - chr6_1:27060876-27060895 Msa0880460:intron 25.0%
! ACAAAAATTAAACAAGGTCA+GGG + chr6_1:27061224-27061243 None:intergenic 25.0%
! AACAAAAATTAAACAAGGTC+AGG + chr6_1:27061225-27061244 None:intergenic 25.0%
! GTTGGAACAAAAATTAAACA+AGG + chr6_1:27061230-27061249 None:intergenic 25.0%
TAAATCCAAAATCGATGTAC+TGG + chr6_1:27060207-27060226 None:intergenic 30.0%
! ATAATGGGAAAAAAGGATGT+AGG + chr6_1:27060495-27060514 None:intergenic 30.0%
! GTCGTATATAATGGGAAAAA+AGG + chr6_1:27060502-27060521 None:intergenic 30.0%
ATGCATGTGTCGTATATAAT+GGG + chr6_1:27060510-27060529 None:intergenic 30.0%
TATGCATGTGTCGTATATAA+TGG + chr6_1:27060511-27060530 None:intergenic 30.0%
! TACGACACATGCATAATTTT+TGG - chr6_1:27060516-27060535 Msa0880460:CDS 30.0%
ACATTAAAAGGTGAAGCATA+TGG + chr6_1:27060623-27060642 None:intergenic 30.0%
TGAATATTAGAGCCATTAGT+TGG + chr6_1:27060650-27060669 None:intergenic 30.0%
CAGATTGATATACTAGATGA+TGG - chr6_1:27060770-27060789 Msa0880460:intron 30.0%
! ATATACTAGATGATGGTTTC+CGG - chr6_1:27060777-27060796 Msa0880460:intron 30.0%
TAAATAATGAGACGAACCTA+GGG + chr6_1:27060844-27060863 None:intergenic 30.0%
TTAAATAATGAGACGAACCT+AGG + chr6_1:27060845-27060864 None:intergenic 30.0%
ACCATTTGAACTCAATTGTT+TGG - chr6_1:27061029-27061048 Msa0880460:CDS 30.0%
ACCAAACAATTGAGTTCAAA+TGG + chr6_1:27061033-27061052 None:intergenic 30.0%
CTGTAAGCAGAAAATAAAGT+TGG + chr6_1:27061248-27061267 None:intergenic 30.0%
TACTACAAATGCACTTATGA+AGG - chr6_1:27061272-27061291 Msa0880460:CDS 30.0%
AGGTAAAGAAACAAATCCAA+AGG - chr6_1:27061300-27061319 Msa0880460:CDS 30.0%
TAATGAAGTTTCTCAAGATC+TGG + chr6_1:27061409-27061428 None:intergenic 30.0%
CCATAACCATAAAAGTGAAT+TGG + chr6_1:27061515-27061534 None:intergenic 30.0%
!! CCAATTCACTTTTATGGTTA+TGG - chr6_1:27061512-27061531 Msa0880460:five_prime_UTR 30.0%
!! AAACTGGTTCTAAGATCAAA+TGG + chr6_1:27061551-27061570 None:intergenic 30.0%
TAAATCCAAAATCGATGTAC+TGG + chr6_1:27060207-27060226 None:intergenic 30.0%
! ATAATGGGAAAAAAGGATGT+AGG + chr6_1:27060495-27060514 None:intergenic 30.0%
! GTCGTATATAATGGGAAAAA+AGG + chr6_1:27060502-27060521 None:intergenic 30.0%
ATGCATGTGTCGTATATAAT+GGG + chr6_1:27060510-27060529 None:intergenic 30.0%
TATGCATGTGTCGTATATAA+TGG + chr6_1:27060511-27060530 None:intergenic 30.0%
! TACGACACATGCATAATTTT+TGG - chr6_1:27060516-27060535 Msa0880460:CDS 30.0%
ACATTAAAAGGTGAAGCATA+TGG + chr6_1:27060623-27060642 None:intergenic 30.0%
TGAATATTAGAGCCATTAGT+TGG + chr6_1:27060650-27060669 None:intergenic 30.0%
CAGATTGATATACTAGATGA+TGG - chr6_1:27060770-27060789 Msa0880460:intron 30.0%
! ATATACTAGATGATGGTTTC+CGG - chr6_1:27060777-27060796 Msa0880460:intron 30.0%
TAAATAATGAGACGAACCTA+GGG + chr6_1:27060844-27060863 None:intergenic 30.0%
TTAAATAATGAGACGAACCT+AGG + chr6_1:27060845-27060864 None:intergenic 30.0%
ACCATTTGAACTCAATTGTT+TGG - chr6_1:27061029-27061048 Msa0880460:CDS 30.0%
ACCAAACAATTGAGTTCAAA+TGG + chr6_1:27061033-27061052 None:intergenic 30.0%
CTGTAAGCAGAAAATAAAGT+TGG + chr6_1:27061248-27061267 None:intergenic 30.0%
TACTACAAATGCACTTATGA+AGG - chr6_1:27061272-27061291 Msa0880460:CDS 30.0%
AGGTAAAGAAACAAATCCAA+AGG - chr6_1:27061300-27061319 Msa0880460:CDS 30.0%
TAATGAAGTTTCTCAAGATC+TGG + chr6_1:27061409-27061428 None:intergenic 30.0%
CCATAACCATAAAAGTGAAT+TGG + chr6_1:27061515-27061534 None:intergenic 30.0%
!! CCAATTCACTTTTATGGTTA+TGG - chr6_1:27061512-27061531 Msa0880460:five_prime_UTR 30.0%
!! AAACTGGTTCTAAGATCAAA+TGG + chr6_1:27061551-27061570 None:intergenic 30.0%
AAGGAGATGATGAAACATGT+GGG + chr6_1:27060457-27060476 None:intergenic 35.0%
TAAGGAGATGATGAAACATG+TGG + chr6_1:27060458-27060477 None:intergenic 35.0%
! TAGGATGCATGCATTTTCTA+AGG + chr6_1:27060476-27060495 None:intergenic 35.0%
AACACTTCATGTTTCTCCAT+TGG + chr6_1:27060581-27060600 None:intergenic 35.0%
CATATGGTGAAGATGAGATA+GGG + chr6_1:27060607-27060626 None:intergenic 35.0%
! TTATTTCTTTGCCTCCTTTC+TGG + chr6_1:27060718-27060737 None:intergenic 35.0%
TGAAAGACAACAAATTCCCT+AGG - chr6_1:27060825-27060844 Msa0880460:intron 35.0%
TCGTGGAAACAACTTATGAA+GGG - chr6_1:27061342-27061361 Msa0880460:CDS 35.0%
TTCACGTGATTTAGTTAAGC+AGG + chr6_1:27061492-27061511 None:intergenic 35.0%
!! CGTGAACCAATTCACTTTTA+TGG - chr6_1:27061506-27061525 Msa0880460:five_prime_UTR 35.0%
!! GGTTCTAAGATCAAATGGTT+TGG + chr6_1:27061546-27061565 None:intergenic 35.0%
AAGGAGATGATGAAACATGT+GGG + chr6_1:27060457-27060476 None:intergenic 35.0%
TAAGGAGATGATGAAACATG+TGG + chr6_1:27060458-27060477 None:intergenic 35.0%
! TAGGATGCATGCATTTTCTA+AGG + chr6_1:27060476-27060495 None:intergenic 35.0%
AACACTTCATGTTTCTCCAT+TGG + chr6_1:27060581-27060600 None:intergenic 35.0%
CATATGGTGAAGATGAGATA+GGG + chr6_1:27060607-27060626 None:intergenic 35.0%
! TTATTTCTTTGCCTCCTTTC+TGG + chr6_1:27060718-27060737 None:intergenic 35.0%
TGAAAGACAACAAATTCCCT+AGG - chr6_1:27060825-27060844 Msa0880460:intron 35.0%
TCGTGGAAACAACTTATGAA+GGG - chr6_1:27061342-27061361 Msa0880460:CDS 35.0%
TTCACGTGATTTAGTTAAGC+AGG + chr6_1:27061492-27061511 None:intergenic 35.0%
!! CGTGAACCAATTCACTTTTA+TGG - chr6_1:27061506-27061525 Msa0880460:five_prime_UTR 35.0%
!! GGTTCTAAGATCAAATGGTT+TGG + chr6_1:27061546-27061565 None:intergenic 35.0%
TGAACTTCATGCGTGAAACA+TGG + chr6_1:27060366-27060385 None:intergenic 40.0%
GCATATGGTGAAGATGAGAT+AGG + chr6_1:27060608-27060627 None:intergenic 40.0%
! GAGAAAGTATGGGGAAAAGA+TGG - chr6_1:27060802-27060821 Msa0880460:intron 40.0%
! GCCAAGAGATAAGATTAGTC+TGG - chr6_1:27060936-27060955 Msa0880460:intron 40.0%
GCCAGACTAATCTTATCTCT+TGG + chr6_1:27060940-27060959 None:intergenic 40.0%
GTCGTGGAAACAACTTATGA+AGG - chr6_1:27061341-27061360 Msa0880460:CDS 40.0%
! TTTCAGCTGACTTCTCTACA+GGG + chr6_1:27061379-27061398 None:intergenic 40.0%
!! AACCAGTTTGTTGTGAGAAG+TGG - chr6_1:27061562-27061581 Msa0880460:five_prime_UTR 40.0%
AACCACTTCTCACAACAAAC+TGG + chr6_1:27061567-27061586 None:intergenic 40.0%
TGAACTTCATGCGTGAAACA+TGG + chr6_1:27060366-27060385 None:intergenic 40.0%
GCATATGGTGAAGATGAGAT+AGG + chr6_1:27060608-27060627 None:intergenic 40.0%
! GAGAAAGTATGGGGAAAAGA+TGG - chr6_1:27060802-27060821 Msa0880460:intron 40.0%
! GCCAAGAGATAAGATTAGTC+TGG - chr6_1:27060936-27060955 Msa0880460:intron 40.0%
GCCAGACTAATCTTATCTCT+TGG + chr6_1:27060940-27060959 None:intergenic 40.0%
GTCGTGGAAACAACTTATGA+AGG - chr6_1:27061341-27061360 Msa0880460:CDS 40.0%
! TTTCAGCTGACTTCTCTACA+GGG + chr6_1:27061379-27061398 None:intergenic 40.0%
!! AACCAGTTTGTTGTGAGAAG+TGG - chr6_1:27061562-27061581 Msa0880460:five_prime_UTR 40.0%
AACCACTTCTCACAACAAAC+TGG + chr6_1:27061567-27061586 None:intergenic 40.0%
GGCAAGAAGGTCAATATGTG+TGG + chr6_1:27060433-27060452 None:intergenic 45.0%
GAGATGATGAAACATGTGGG+CGG + chr6_1:27060454-27060473 None:intergenic 45.0%
AAGGAGACTTCAAGCCAGAA+AGG - chr6_1:27060701-27060720 Msa0880460:intron 45.0%
! TACTAGATGATGGTTTCCGG+TGG - chr6_1:27060780-27060799 Msa0880460:intron 45.0%
! GTTTCCGGTGGAGAAAGTAT+GGG - chr6_1:27060792-27060811 Msa0880460:intron 45.0%
! TTTCCGGTGGAGAAAGTATG+GGG - chr6_1:27060793-27060812 Msa0880460:intron 45.0%
TTTCCCCATACTTTCTCCAC+CGG + chr6_1:27060799-27060818 None:intergenic 45.0%
! TGTTAACTCTCCGGTTCTGA+GGG - chr6_1:27060885-27060904 Msa0880460:intron 45.0%
TGGCCGAACTCCAGATTATT+GGG + chr6_1:27060920-27060939 None:intergenic 45.0%
TTGGCCGAACTCCAGATTAT+TGG + chr6_1:27060921-27060940 None:intergenic 45.0%
ATGCACTTATGAAGGCTGCA+AGG - chr6_1:27061280-27061299 Msa0880460:CDS 45.0%
! CTTTCAGCTGACTTCTCTAC+AGG + chr6_1:27061380-27061399 None:intergenic 45.0%
TGTGAGAAGTGGTTGCGAAA+TGG - chr6_1:27061573-27061592 Msa0880460:five_prime_UTR 45.0%
GAAGTGGTTGCGAAATGGTT+CGG - chr6_1:27061578-27061597 Msa0880460:five_prime_UTR 45.0%
! GTTGCGAAATGGTTCGGATT+CGG - chr6_1:27061584-27061603 Msa0880460:five_prime_UTR 45.0%
GGCAAGAAGGTCAATATGTG+TGG + chr6_1:27060433-27060452 None:intergenic 45.0%
GAGATGATGAAACATGTGGG+CGG + chr6_1:27060454-27060473 None:intergenic 45.0%
AAGGAGACTTCAAGCCAGAA+AGG - chr6_1:27060701-27060720 Msa0880460:intron 45.0%
! TACTAGATGATGGTTTCCGG+TGG - chr6_1:27060780-27060799 Msa0880460:intron 45.0%
! GTTTCCGGTGGAGAAAGTAT+GGG - chr6_1:27060792-27060811 Msa0880460:intron 45.0%
! TTTCCGGTGGAGAAAGTATG+GGG - chr6_1:27060793-27060812 Msa0880460:intron 45.0%
TTTCCCCATACTTTCTCCAC+CGG + chr6_1:27060799-27060818 None:intergenic 45.0%
! TGTTAACTCTCCGGTTCTGA+GGG - chr6_1:27060885-27060904 Msa0880460:intron 45.0%
TGGCCGAACTCCAGATTATT+GGG + chr6_1:27060920-27060939 None:intergenic 45.0%
TTGGCCGAACTCCAGATTAT+TGG + chr6_1:27060921-27060940 None:intergenic 45.0%
ATGCACTTATGAAGGCTGCA+AGG - chr6_1:27061280-27061299 Msa0880460:CDS 45.0%
! CTTTCAGCTGACTTCTCTAC+AGG + chr6_1:27061380-27061399 None:intergenic 45.0%
TGTGAGAAGTGGTTGCGAAA+TGG - chr6_1:27061573-27061592 Msa0880460:five_prime_UTR 45.0%
GAAGTGGTTGCGAAATGGTT+CGG - chr6_1:27061578-27061597 Msa0880460:five_prime_UTR 45.0%
! GTTGCGAAATGGTTCGGATT+CGG - chr6_1:27061584-27061603 Msa0880460:five_prime_UTR 45.0%
GAGACTTCAAGCCAGAAAGG+AGG - chr6_1:27060704-27060723 Msa0880460:intron 50.0%
GGTTTCCGGTGGAGAAAGTA+TGG - chr6_1:27060791-27060810 Msa0880460:intron 50.0%
GTGTTAACTCTCCGGTTCTG+AGG - chr6_1:27060884-27060903 Msa0880460:intron 50.0%
! GCCCCCAATAATCTGGAGTT+CGG - chr6_1:27060914-27060933 Msa0880460:intron 50.0%
GCCGAACTCCAGATTATTGG+GGG + chr6_1:27060918-27060937 None:intergenic 50.0%
GGCCGAACTCCAGATTATTG+GGG + chr6_1:27060919-27060938 None:intergenic 50.0%
!! GCTCATCTTTGGAGTGCCTT+TGG + chr6_1:27061319-27061338 None:intergenic 50.0%
! AAGGCACTCCAAAGATGAGC+AGG - chr6_1:27061319-27061338 Msa0880460:CDS 50.0%
TTCCACGACCTGCTCATCTT+TGG + chr6_1:27061330-27061349 None:intergenic 50.0%
GAGACTTCAAGCCAGAAAGG+AGG - chr6_1:27060704-27060723 Msa0880460:intron 50.0%
GGTTTCCGGTGGAGAAAGTA+TGG - chr6_1:27060791-27060810 Msa0880460:intron 50.0%
GTGTTAACTCTCCGGTTCTG+AGG - chr6_1:27060884-27060903 Msa0880460:intron 50.0%
! GCCCCCAATAATCTGGAGTT+CGG - chr6_1:27060914-27060933 Msa0880460:intron 50.0%
GCCGAACTCCAGATTATTGG+GGG + chr6_1:27060918-27060937 None:intergenic 50.0%
GGCCGAACTCCAGATTATTG+GGG + chr6_1:27060919-27060938 None:intergenic 50.0%
!! GCTCATCTTTGGAGTGCCTT+TGG + chr6_1:27061319-27061338 None:intergenic 50.0%
! AAGGCACTCCAAAGATGAGC+AGG - chr6_1:27061319-27061338 Msa0880460:CDS 50.0%
TTCCACGACCTGCTCATCTT+TGG + chr6_1:27061330-27061349 None:intergenic 50.0%
GAAACATGTGGGCGGCAAGA+AGG + chr6_1:27060446-27060465 None:intergenic 55.0%
!! ACTCTCCGGTTCTGAGGGAA+AGG - chr6_1:27060890-27060909 Msa0880460:intron 55.0%
!! CTCTCCGGTTCTGAGGGAAA+GGG - chr6_1:27060891-27060910 Msa0880460:intron 55.0%
!! TCTCCGGTTCTGAGGGAAAG+GGG - chr6_1:27060892-27060911 Msa0880460:intron 55.0%
GAAAGGGGCCCCCAATAATC+TGG - chr6_1:27060907-27060926 Msa0880460:intron 55.0%
CTCCAAAGATGAGCAGGTCG+TGG - chr6_1:27061325-27061344 Msa0880460:CDS 55.0%
GAAACATGTGGGCGGCAAGA+AGG + chr6_1:27060446-27060465 None:intergenic 55.0%
!! ACTCTCCGGTTCTGAGGGAA+AGG - chr6_1:27060890-27060909 Msa0880460:intron 55.0%
!! CTCTCCGGTTCTGAGGGAAA+GGG - chr6_1:27060891-27060910 Msa0880460:intron 55.0%
!! TCTCCGGTTCTGAGGGAAAG+GGG - chr6_1:27060892-27060911 Msa0880460:intron 55.0%
GAAAGGGGCCCCCAATAATC+TGG - chr6_1:27060907-27060926 Msa0880460:intron 55.0%
CTCCAAAGATGAGCAGGTCG+TGG - chr6_1:27061325-27061344 Msa0880460:CDS 55.0%
GGGCCCCTTTCCCTCAGAAC+CGG + chr6_1:27060898-27060917 None:intergenic 65.0%
GGGCCCCTTTCCCTCAGAAC+CGG + chr6_1:27060898-27060917 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 27060202 27061656 27060202 ID=Msa0880460;Name=Msa0880460
chr6_1 mRNA 27060202 27061656 27060202 ID=Msa0880460-mRNA-1;Parent=Msa0880460;Name=Msa0880460-mRNA-1;_AED=0.00;_eAED=0.00;_QI=280|1|1|1|1|1|2|193|186
chr6_1 exon 27060202 27060590 27060202 ID=Msa0880460-mRNA-1:exon:6620;Parent=Msa0880460-mRNA-1
chr6_1 exon 27061012 27061656 27061012 ID=Msa0880460-mRNA-1:exon:6619;Parent=Msa0880460-mRNA-1
chr6_1 five_prime_UTR 27061377 27061656 27061377 ID=Msa0880460-mRNA-1:five_prime_utr;Parent=Msa0880460-mRNA-1
chr6_1 CDS 27061012 27061376 27061012 ID=Msa0880460-mRNA-1:cds;Parent=Msa0880460-mRNA-1
chr6_1 CDS 27060395 27060590 27060395 ID=Msa0880460-mRNA-1:cds;Parent=Msa0880460-mRNA-1
chr6_1 three_prime_UTR 27060202 27060394 27060202 ID=Msa0880460-mRNA-1:three_prime_utr;Parent=Msa0880460-mRNA-1
Gene Sequence

>Msa0880460

ATGCATGCATCCTACATCCTTTTTTCCCATTATATACGACACATGCATAATTTTTGGTGTAGTCTTTTACGTACTACCTTTCTTATTACTTCAAAACCAATGGAGAAACATGAAGTGTTACTCCCTATCTCATCTTCACCATATGCTTCACCTTTTAATGTTAAACCAACTAATGGCTCTAATATTCATGTTAAAAAAGCAGAATATCTAAAAACTAAAAAGGAGACTTCAAGCCAGAAAGGAGGCAAAGAAATAATGAAGCACAAATATGTATTTCAAACGAGGAGTCAGATTGATATACTAGATGATGGTTTCCGGTGGAGAAAGTATGGGGAAAAGATGGTGAAAGACAACAAATTCCCTAGAAGTTACTACAAATGCACTTATGAAGGCTGCAAGGTAAAGAAACAAATCCAAAGGCACTCCAAAGATGAGCAGGTCGTGGAAACAACTTATGAAGGGATGCATATTCACCCTGTAGAGAAGTCAGCTGAAAGCTTCGACCAGATCTTGAGAAACTTCATTACTAACAATCAACTATGTAATGTAACTCCAATGTAA
Protein sequence

>Msa0880460

MHASYILFSHYIRHMHNFWCSLLRTTFLITSKPMEKHEVLLPISSSPYASPFNVKPTNGSNIHVKKAEYLKTKKETSSQKGGKEIMKHKYVFQTRSQIDILDDGFRWRKYGEKMVKDNKFPRSYYKCTYEGCKVKKQIQRHSKDEQVVETTYEGMHIHPVEKSAESFDQILRNFITNNQLCNVTPM*