Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881470 | XP_024632022.1 | 94.813 | 347 | 15 | 2 | 83 | 429 | 1 | 344 | 0.0 | 648 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881470 | sp|Q9FY69|BH143_ARATH | 34.926 | 272 | 143 | 12 | 164 | 423 | 73 | 322 | 1.53e-22 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881470 | G7IPM5 | 94.813 | 347 | 15 | 2 | 83 | 429 | 1 | 344 | 0.0 | 648 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0189960 | Msa0881470 | 0.977228 | 2.310897e-143 | -8.615850e-47 |
| Msa0881470 | Msa1123560 | 0.851161 | 1.062625e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881470 | MtrunA17_Chr2g0279491 | 94.813 | 347 | 15 | 2 | 83 | 429 | 1 | 344 | 0.0 | 648 |
| Msa0881470 | MtrunA17_Chr5g0427141 | 31.858 | 339 | 184 | 14 | 127 | 426 | 47 | 377 | 3.86e-26 | 108 |
| Msa0881470 | MtrunA17_Chr2g0279501 | 90.909 | 44 | 4 | 0 | 1 | 44 | 1 | 44 | 2.95e-23 | 92.0 |
| Msa0881470 | MtrunA17_Chr5g0427151 | 68.182 | 44 | 14 | 0 | 1 | 44 | 1 | 44 | 6.43e-13 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881470 | AT5G09460.1 | 34.926 | 272 | 143 | 12 | 164 | 423 | 73 | 322 | 1.56e-23 | 100 |
| Msa0881470 | AT5G64340.1 | 36.214 | 243 | 117 | 9 | 183 | 417 | 97 | 309 | 2.12e-23 | 100 |
| Msa0881470 | AT5G50010.1 | 28.058 | 278 | 138 | 13 | 152 | 417 | 75 | 302 | 1.04e-11 | 65.9 |
Find 112 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCAAACATGGTTCTGTTT+TGG | 0.175141 | 6_1:-28661769 | None:intergenic |
| AACGCTTTGGTTCTTTGATA+TGG | 0.214409 | 6_1:-28661469 | None:intergenic |
| CCCGATGTCGGTGCATTTCC+AGG | 0.219573 | 6_1:+28661675 | Msa0881470:CDS |
| CGATTGATATATTGTTCTTT+AGG | 0.235862 | 6_1:+28661495 | Msa0881470:CDS |
| CACCCCAAGCATGCCGGTTT+GGG | 0.281338 | 6_1:-28662549 | None:intergenic |
| ATTCTCCATTGGCCGATAAA+AGG | 0.283896 | 6_1:+28662153 | Msa0881470:CDS |
| CAGCAAGTCAAACAGGATTT+CGG | 0.294244 | 6_1:+28661029 | Msa0881470:CDS |
| GGACATAACTTAAGTGATTC+TGG | 0.298221 | 6_1:+28660818 | Msa0881470:five_prime_UTR |
| TGCCGAGTAACCACACAAAC+TGG | 0.316885 | 6_1:-28661625 | None:intergenic |
| TGAATTAGCAGTACCTCTTT+TGG | 0.335511 | 6_1:+28659725 | Msa0881470:intron |
| TGGTGATAACCAATTGAAAA+AGG | 0.339054 | 6_1:+28662415 | Msa0881470:CDS |
| GAAAGACATGCAACTAATTT+CGG | 0.351226 | 6_1:+28661969 | Msa0881470:CDS |
| AAGGAACCCTTGCTCTTCAT+TGG | 0.352750 | 6_1:-28661739 | None:intergenic |
| AGCAAGTCAAACAGGATTTC+GGG | 0.359421 | 6_1:+28661030 | Msa0881470:CDS |
| GTCAGCAAGCTTGGGGTAGC+AGG | 0.362679 | 6_1:-28661708 | None:intergenic |
| TCTTTCTGGTTGGATGGTTA+AGG | 0.369694 | 6_1:+28661527 | Msa0881470:CDS |
| TCTTCAGGCAAACTGTATTT+CGG | 0.374118 | 6_1:-28662005 | None:intergenic |
| ATTATCTTCTTCAGTTTGTC+TGG | 0.375885 | 6_1:-28662381 | None:intergenic |
| TCACCCCAAGCATGCCGGTT+TGG | 0.375945 | 6_1:-28662550 | None:intergenic |
| ACGCTTTGGTTCTTTGATAT+GGG | 0.376134 | 6_1:-28661468 | None:intergenic |
| CGAGAATTCTCAATGTTTCA+CGG | 0.378250 | 6_1:-28662445 | None:intergenic |
| TTTGTCTGGCAAAATACATT+TGG | 0.380415 | 6_1:-28662367 | None:intergenic |
| TTTAGATTAACTGAGTAGTT+TGG | 0.390250 | 6_1:+28660978 | Msa0881470:five_prime_UTR |
| GACGGCCAAGCCACAGGCTG+TGG | 0.391458 | 6_1:-28661570 | None:intergenic |
| GTCTGATCAGTCAGCAAGCT+TGG | 0.394597 | 6_1:-28661717 | None:intergenic |
| TGATCCTGCTCTGACTCTTC+AGG | 0.400292 | 6_1:-28662020 | None:intergenic |
| TCAACCTTTGCAAGATTGTC+AGG | 0.400374 | 6_1:+28661117 | Msa0881470:CDS |
| TGTCCCAAACCGGCATGCTT+GGG | 0.402671 | 6_1:+28662546 | Msa0881470:CDS |
| ATGTCCCAAACCGGCATGCT+TGG | 0.403848 | 6_1:+28662545 | Msa0881470:CDS |
| ATCACTCTAACAATTATTGT+TGG | 0.407189 | 6_1:-28661085 | None:intergenic |
| AAACATTGTAATGGCATTGA+AGG | 0.416641 | 6_1:+28661058 | Msa0881470:CDS |
| ATATCAATCGCTCAACGCTT+TGG | 0.417429 | 6_1:-28661482 | None:intergenic |
| TCTGATCAGTCAGCAAGCTT+GGG | 0.421201 | 6_1:-28661716 | None:intergenic |
| TAAAGGGTAAAAGGGAGAAT+TGG | 0.422332 | 6_1:+28659679 | None:intergenic |
| CTCTGAACAAGTGGGAAGAC+AGG | 0.423360 | 6_1:-28661897 | None:intergenic |
| TCAAGCTTATGATGTAAATC+AGG | 0.424341 | 6_1:+28661947 | Msa0881470:CDS |
| GGACGAGCAGCAAGTCAAAC+AGG | 0.430378 | 6_1:+28661022 | Msa0881470:CDS |
| CTTGCCCACAGCCTGTGGCT+TGG | 0.438437 | 6_1:+28661565 | Msa0881470:CDS |
| TCCCAGTTTGTGTGGTTACT+CGG | 0.446760 | 6_1:+28661623 | Msa0881470:CDS |
| GAAAAGACTTACAGATGGAT+TGG | 0.452483 | 6_1:-28659827 | None:intergenic |
| CCTGGAAATGCACCGACATC+GGG | 0.453130 | 6_1:-28661675 | None:intergenic |
| CGGGCATTAAAACATTGTAA+TGG | 0.458411 | 6_1:+28661049 | Msa0881470:CDS |
| AAGTTAACTCCTGGAGCAAA+AGG | 0.460584 | 6_1:+28662470 | Msa0881470:CDS |
| CACAAACTGGGATCCGGCGT+GGG | 0.461869 | 6_1:-28661612 | None:intergenic |
| TGGAATGGAAAGAGAGAGTG+AGG | 0.463443 | 6_1:-28659807 | None:intergenic |
| CAAATCAGCATGCGTTGGTT+GGG | 0.463796 | 6_1:+28660862 | Msa0881470:five_prime_UTR |
| TGAAGAGCAAGGGTTCCTTC+AGG | 0.467207 | 6_1:+28661743 | Msa0881470:CDS |
| ACAAATCAGCATGCGTTGGT+TGG | 0.469250 | 6_1:+28660861 | Msa0881470:five_prime_UTR |
| GTAGCAGGAGCTGTGAATCC+TGG | 0.469952 | 6_1:-28661693 | None:intergenic |
| TCTTGTTTCAGGAAAATTTG+TGG | 0.470342 | 6_1:+28660794 | Msa0881470:intron |
| TTATGTGCTGCTTTCAAACA+TGG | 0.478093 | 6_1:-28661780 | None:intergenic |
| TTGGCCTTGCCCACAGCCTG+TGG | 0.480119 | 6_1:+28661560 | Msa0881470:CDS |
| AAATCTTTGATGTCCCAAAC+CGG | 0.490129 | 6_1:+28662536 | Msa0881470:CDS |
| TTGGTAAGAATCAAAAGTTA+TGG | 0.490345 | 6_1:+28660997 | Msa0881470:exon |
| AATTGTGTAGTAGTAACAAT+TGG | 0.490535 | 6_1:-28661921 | None:intergenic |
| TCGGGAAAAGTGCATGTACT+AGG | 0.492334 | 6_1:-28661657 | None:intergenic |
| AGGATACTGCTAGCTCTGAT+TGG | 0.496152 | 6_1:+28662213 | Msa0881470:CDS |
| GTGGGCAAGGCCAAGACTCG+TGG | 0.499702 | 6_1:-28661551 | None:intergenic |
| TGGTTAAGGCCCACGAGTCT+TGG | 0.503846 | 6_1:+28661541 | Msa0881470:CDS |
| TCCTGGAAATGCACCGACAT+CGG | 0.507953 | 6_1:-28661676 | None:intergenic |
| AGAAATTTATTATCTTTGAC+CGG | 0.509368 | 6_1:+28661844 | Msa0881470:CDS |
| TGGCCGTCACTTTATTCCAA+AGG | 0.514084 | 6_1:+28661585 | Msa0881470:CDS |
| CAAGCCACAGGCTGTGGGCA+AGG | 0.517815 | 6_1:-28661564 | None:intergenic |
| TAAAGTGACGGCCAAGCCAC+AGG | 0.532373 | 6_1:-28661576 | None:intergenic |
| ACAAACTGGGATCCGGCGTG+GGG | 0.534438 | 6_1:-28661611 | None:intergenic |
| TGATGATGAGGTAACAAGTA+CGG | 0.535186 | 6_1:+28662127 | Msa0881470:CDS |
| ATTTAGAAAATGTCCAAAAG+AGG | 0.536774 | 6_1:-28659738 | None:intergenic |
| TAACCACACAAACTGGGATC+CGG | 0.537805 | 6_1:-28661618 | None:intergenic |
| GATGATGAGGTAACAAGTAC+GGG | 0.539387 | 6_1:+28662128 | Msa0881470:CDS |
| ACACAAACTGGGATCCGGCG+TGG | 0.547985 | 6_1:-28661613 | None:intergenic |
| ATTCTCGAGAAGTTAACTCC+TGG | 0.553958 | 6_1:+28662461 | Msa0881470:CDS |
| ACAATTGGACTCTGAACAAG+TGG | 0.554080 | 6_1:-28661906 | None:intergenic |
| ACCTTGTCTTATTATCAGAC+CGG | 0.556624 | 6_1:-28661863 | None:intergenic |
| CTCAGTTAATCTAAACGCAA+TGG | 0.559259 | 6_1:-28660970 | None:intergenic |
| AAGTACGGGCCATTCTCCAT+TGG | 0.565316 | 6_1:+28662142 | Msa0881470:CDS |
| AATTCAAGCGTACAACTTGG+CGG | 0.565818 | 6_1:-28660903 | None:intergenic |
| TGCGCGTGCTTGTGCTTGCG+AGG | 0.565990 | 6_1:-28659781 | None:intergenic |
| AAGCACAAGTTGATTGATGG+TGG | 0.566047 | 6_1:+28662245 | Msa0881470:CDS |
| TCTCTAGATCATCGTTCTCG+TGG | 0.566678 | 6_1:+28660942 | Msa0881470:five_prime_UTR |
| TTTGCCTGAAGAGTCAGAGC+AGG | 0.567684 | 6_1:+28662016 | Msa0881470:CDS |
| TGGGCAAGGCCAAGACTCGT+GGG | 0.572098 | 6_1:-28661550 | None:intergenic |
| ACGCCGGATCCCAGTTTGTG+TGG | 0.581979 | 6_1:+28661615 | Msa0881470:CDS |
| ACGGCCAAGCCACAGGCTGT+GGG | 0.582071 | 6_1:-28661569 | None:intergenic |
| CTGATCAGTCAGCAAGCTTG+GGG | 0.586521 | 6_1:-28661715 | None:intergenic |
| TAAGAATCAAAAGTTATGGT+AGG | 0.587469 | 6_1:+28661001 | Msa0881470:exon |
| GAAGATAATTCAGCAGCAGT+TGG | 0.590809 | 6_1:+28662395 | Msa0881470:CDS |
| GCCGAGTAACCACACAAACT+GGG | 0.596870 | 6_1:-28661624 | None:intergenic |
| GTCCCAAACCGGCATGCTTG+GGG | 0.597778 | 6_1:+28662547 | Msa0881470:CDS |
| GACTTACAGATGGATTGGAA+TGG | 0.603437 | 6_1:-28659822 | None:intergenic |
| TCTGAACAAGTGGGAAGACA+GGG | 0.607368 | 6_1:-28661896 | None:intergenic |
| ATATTTCACCCCAAGCATGC+CGG | 0.607409 | 6_1:-28662555 | None:intergenic |
| CTGACCTGACAATCTTGCAA+AGG | 0.607594 | 6_1:-28661121 | None:intergenic |
| GATCAGACCAATGAAGAGCA+AGG | 0.613816 | 6_1:+28661732 | Msa0881470:CDS |
| AGGAACAAATCAGCATGCGT+TGG | 0.613837 | 6_1:+28660857 | Msa0881470:five_prime_UTR |
| ATAAATTCAAGCGTACAACT+TGG | 0.613947 | 6_1:-28660906 | None:intergenic |
| CTGGAGATCTCAACGAACAC+AGG | 0.613970 | 6_1:+28660837 | Msa0881470:five_prime_UTR |
| CAAACTGGGATCCGGCGTGG+GGG | 0.624572 | 6_1:-28661610 | None:intergenic |
| ATCAGACCAATGAAGAGCAA+GGG | 0.626049 | 6_1:+28661733 | Msa0881470:CDS |
| TGTTTCAGGAAAATTTGTGG+AGG | 0.628575 | 6_1:+28660797 | Msa0881470:intron |
| AGCACAAGTTGATTGATGGT+GGG | 0.632895 | 6_1:+28662246 | Msa0881470:CDS |
| CTAGCACTGTCTACGAGTGG+TGG | 0.637309 | 6_1:-28662281 | None:intergenic |
| TTTGATACAAGAACAAATCG+AGG | 0.637624 | 6_1:+28662181 | Msa0881470:CDS |
| GTTTCATCGATGACTAGCAG+TGG | 0.639667 | 6_1:-28662500 | None:intergenic |
| GAGCCTTTGGAATAAAGTGA+CGG | 0.640143 | 6_1:-28661588 | None:intergenic |
| TGACTCTGATGATGATGATG+AGG | 0.659151 | 6_1:+28662115 | Msa0881470:CDS |
| GCTGAATCGAAGCATTCTGA+TGG | 0.665799 | 6_1:+28662344 | Msa0881470:CDS |
| ACAAATCGAGGACACAGAGG+AGG | 0.670161 | 6_1:+28662193 | Msa0881470:CDS |
| GAAAGCAGCACATAATAACA+TGG | 0.675231 | 6_1:+28661788 | Msa0881470:CDS |
| ACCGGTCTGATAATAAGACA+AGG | 0.684713 | 6_1:+28661862 | Msa0881470:CDS |
| GAACTAGCACTGTCTACGAG+TGG | 0.697232 | 6_1:-28662284 | None:intergenic |
| CAATTGGACTCTGAACAAGT+GGG | 0.729133 | 6_1:-28661905 | None:intergenic |
| AGAACAAATCGAGGACACAG+AGG | 0.739585 | 6_1:+28662190 | Msa0881470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATTTGAATAAGAAAAATT+AGG | + | chr6_1:28660431-28660450 | Msa0881470:intron | 15.0% |
| !! | AATAAGAAAAATTAGGAAAA+AGG | + | chr6_1:28660438-28660457 | Msa0881470:intron | 15.0% |
| !! | ATAAGAAAAATTAGGAAAAA+GGG | + | chr6_1:28660439-28660458 | Msa0881470:intron | 15.0% |
| !! | ATTACAAAATTAGGAATTTC+AGG | + | chr6_1:28660047-28660066 | Msa0881470:intron | 20.0% |
| !! | AAAAAAATGAATGTTTGAGT+TGG | + | chr6_1:28660492-28660511 | Msa0881470:intron | 20.0% |
| !!! | ACTTTAATTTTGAGAGATTT+TGG | + | chr6_1:28660702-28660721 | Msa0881470:intron | 20.0% |
| !! | AATTCTTGACATGATTATTA+AGG | + | chr6_1:28661192-28661211 | Msa0881470:intron | 20.0% |
| !! | AGAAATTTATTATCTTTGAC+CGG | + | chr6_1:28661844-28661863 | Msa0881470:CDS | 20.0% |
| !!! | TATCAAATAAGTCCTTTTAT+CGG | - | chr6_1:28662168-28662187 | None:intergenic | 20.0% |
| ! | ATTTAGAAAATGTCCAAAAG+AGG | - | chr6_1:28659741-28659760 | None:intergenic | 25.0% |
| ! | TTCTTATGTACTTCATTTCT+CGG | + | chr6_1:28659897-28659916 | Msa0881470:intron | 25.0% |
| !!! | TTTTCAATTTATCTTGCTGT+TGG | + | chr6_1:28659961-28659980 | Msa0881470:intron | 25.0% |
| ! | TCTTATTCAAATTGAAGAGA+AGG | - | chr6_1:28660425-28660444 | None:intergenic | 25.0% |
| ! | AATAACTAATGTGACAAACA+AGG | - | chr6_1:28660657-28660676 | None:intergenic | 25.0% |
| !! | GTATGATATAATCTTGTTTC+AGG | + | chr6_1:28660783-28660802 | Msa0881470:intron | 25.0% |
| ! | TTTAGATTAACTGAGTAGTT+TGG | + | chr6_1:28660978-28660997 | Msa0881470:five_prime_UTR | 25.0% |
| ! | TTGGTAAGAATCAAAAGTTA+TGG | + | chr6_1:28660997-28661016 | Msa0881470:exon | 25.0% |
| ! | TAAGAATCAAAAGTTATGGT+AGG | + | chr6_1:28661001-28661020 | Msa0881470:exon | 25.0% |
| ! | ATCACTCTAACAATTATTGT+TGG | - | chr6_1:28661088-28661107 | None:intergenic | 25.0% |
| !!! | CATTCATTTTTTCTTTAAGC+TGG | + | chr6_1:28661385-28661404 | Msa0881470:intron | 25.0% |
| ! | CGATTGATATATTGTTCTTT+AGG | + | chr6_1:28661495-28661514 | Msa0881470:CDS | 25.0% |
| !!! | TTAGGATCTTTTTTTCTTTC+TGG | + | chr6_1:28661513-28661532 | Msa0881470:CDS | 25.0% |
| ! | AATTGTGTAGTAGTAACAAT+TGG | - | chr6_1:28661924-28661943 | None:intergenic | 25.0% |
| !!! | GGATTTTATCCTTTTTCAAT+TGG | - | chr6_1:28662427-28662446 | None:intergenic | 25.0% |
| GAATTGAAAAGACTTACAGA+TGG | - | chr6_1:28659835-28659854 | None:intergenic | 30.0% | |
| !! | TCTAGAATTCTGAAATTCCA+TGG | - | chr6_1:28660013-28660032 | None:intergenic | 30.0% |
| ! | GCATATTTGAGTTTATATGC+TGG | - | chr6_1:28660332-28660351 | None:intergenic | 30.0% |
| CCACAATAAGATATCTAAAG+AGG | - | chr6_1:28660382-28660401 | None:intergenic | 30.0% | |
| CCTCTTTAGATATCTTATTG+TGG | + | chr6_1:28660379-28660398 | Msa0881470:intron | 30.0% | |
| ! | AATTGAAGAGAAGGTCATTT+TGG | - | chr6_1:28660416-28660435 | None:intergenic | 30.0% |
| !!! | GTCACCAAGGTTTTAAAATT+TGG | + | chr6_1:28660538-28660557 | Msa0881470:intron | 30.0% |
| !!! | CAGACCAAATTTTAAAACCT+TGG | - | chr6_1:28660545-28660564 | None:intergenic | 30.0% |
| ! | TCTTGTTTCAGGAAAATTTG+TGG | + | chr6_1:28660794-28660813 | Msa0881470:intron | 30.0% |
| ATAAATTCAAGCGTACAACT+TGG | - | chr6_1:28660909-28660928 | None:intergenic | 30.0% | |
| ! | AAACATTGTAATGGCATTGA+AGG | + | chr6_1:28661058-28661077 | Msa0881470:CDS | 30.0% |
| ! | AGTAATGTGTTGCTAATTCT+TGG | + | chr6_1:28661142-28661161 | Msa0881470:intron | 30.0% |
| !!! | GATCTTTTTTTCTTTCTGGT+TGG | + | chr6_1:28661517-28661536 | Msa0881470:CDS | 30.0% |
| !!! | TTTTTTTCTTTCTGGTTGGA+TGG | + | chr6_1:28661521-28661540 | Msa0881470:CDS | 30.0% |
| !! | TTCAAACATGGTTCTGTTTT+GGG | - | chr6_1:28661771-28661790 | None:intergenic | 30.0% |
| !! | TTTCAAACATGGTTCTGTTT+TGG | - | chr6_1:28661772-28661791 | None:intergenic | 30.0% |
| AATTTCTTCTGCAAAAATGC+AGG | - | chr6_1:28661831-28661850 | None:intergenic | 30.0% | |
| TCAAGCTTATGATGTAAATC+AGG | + | chr6_1:28661947-28661966 | Msa0881470:CDS | 30.0% | |
| GAAAGACATGCAACTAATTT+CGG | + | chr6_1:28661969-28661988 | Msa0881470:CDS | 30.0% | |
| TTTGATACAAGAACAAATCG+AGG | + | chr6_1:28662181-28662200 | Msa0881470:CDS | 30.0% | |
| !! | ATCAACTTGTGCTTTTTGTT+TGG | - | chr6_1:28662239-28662258 | None:intergenic | 30.0% |
| !! | AAAAAGCACAAGTTGATTGA+TGG | + | chr6_1:28662242-28662261 | Msa0881470:CDS | 30.0% |
| TTTGTCTGGCAAAATACATT+TGG | - | chr6_1:28662370-28662389 | None:intergenic | 30.0% | |
| ATTATCTTCTTCAGTTTGTC+TGG | - | chr6_1:28662384-28662403 | None:intergenic | 30.0% | |
| TGGTGATAACCAATTGAAAA+AGG | + | chr6_1:28662415-28662434 | Msa0881470:CDS | 30.0% | |
| ! | TGAATTAGCAGTACCTCTTT+TGG | + | chr6_1:28659725-28659744 | Msa0881470:intron | 35.0% |
| GAAAAGACTTACAGATGGAT+TGG | - | chr6_1:28659830-28659849 | None:intergenic | 35.0% | |
| TTAAGCAGTTTACCCAAACA+GGG | - | chr6_1:28660115-28660134 | None:intergenic | 35.0% | |
| ATTAAGCAGTTTACCCAAAC+AGG | - | chr6_1:28660116-28660135 | None:intergenic | 35.0% | |
| TCAAATATGCCAATCCAAAC+AGG | + | chr6_1:28660342-28660361 | Msa0881470:intron | 35.0% | |
| !!! | AGGTCATTTTGGCTTAACAA+GGG | - | chr6_1:28660405-28660424 | None:intergenic | 35.0% |
| !!! | AAGGTCATTTTGGCTTAACA+AGG | - | chr6_1:28660406-28660425 | None:intergenic | 35.0% |
| TCAAAAAAAGCAGCAGAAGA+AGG | - | chr6_1:28660469-28660488 | None:intergenic | 35.0% | |
| ! | GAGTTTTTGTATTGTCACCA+AGG | + | chr6_1:28660525-28660544 | Msa0881470:intron | 35.0% |
| TGTTTCAGGAAAATTTGTGG+AGG | + | chr6_1:28660797-28660816 | Msa0881470:intron | 35.0% | |
| GGACATAACTTAAGTGATTC+TGG | + | chr6_1:28660818-28660837 | Msa0881470:five_prime_UTR | 35.0% | |
| CTCAGTTAATCTAAACGCAA+TGG | - | chr6_1:28660973-28660992 | None:intergenic | 35.0% | |
| CGGGCATTAAAACATTGTAA+TGG | + | chr6_1:28661049-28661068 | Msa0881470:CDS | 35.0% | |
| TGATAGGCTTAAGCAATTGA+CGG | - | chr6_1:28661352-28661371 | None:intergenic | 35.0% | |
| ATGCAGAACAGTTAAGTGAT+AGG | - | chr6_1:28661368-28661387 | None:intergenic | 35.0% | |
| !! | ACGCTTTGGTTCTTTGATAT+GGG | - | chr6_1:28661471-28661490 | None:intergenic | 35.0% |
| !! | AACGCTTTGGTTCTTTGATA+TGG | - | chr6_1:28661472-28661491 | None:intergenic | 35.0% |
| !! | TTATGTGCTGCTTTCAAACA+TGG | - | chr6_1:28661783-28661802 | None:intergenic | 35.0% |
| GAAAGCAGCACATAATAACA+TGG | + | chr6_1:28661788-28661807 | Msa0881470:CDS | 35.0% | |
| ! | ACCTTGTCTTATTATCAGAC+CGG | - | chr6_1:28661866-28661885 | None:intergenic | 35.0% |
| TCTTCAGGCAAACTGTATTT+CGG | - | chr6_1:28662008-28662027 | None:intergenic | 35.0% | |
| ! | TGATGATGAGGTAACAAGTA+CGG | + | chr6_1:28662127-28662146 | Msa0881470:CDS | 35.0% |
| CGAGAATTCTCAATGTTTCA+CGG | - | chr6_1:28662448-28662467 | None:intergenic | 35.0% | |
| AAATCTTTGATGTCCCAAAC+CGG | + | chr6_1:28662536-28662555 | Msa0881470:CDS | 35.0% | |
| !! | GACTTACAGATGGATTGGAA+TGG | - | chr6_1:28659825-28659844 | None:intergenic | 40.0% |
| AAACTGAGCAGTAATCTGAC+TGG | + | chr6_1:28660082-28660101 | Msa0881470:intron | 40.0% | |
| AACTGAGCAGTAATCTGACT+GGG | + | chr6_1:28660083-28660102 | Msa0881470:intron | 40.0% | |
| !! | GCTGTTTTCGTAAGCTATCT+TGG | + | chr6_1:28660215-28660234 | Msa0881470:intron | 40.0% |
| CTAAAGAGGAAGCTCACATA+GGG | - | chr6_1:28660368-28660387 | None:intergenic | 40.0% | |
| TCTAAAGAGGAAGCTCACAT+AGG | - | chr6_1:28660369-28660388 | None:intergenic | 40.0% | |
| AATTCAAGCGTACAACTTGG+CGG | - | chr6_1:28660906-28660925 | None:intergenic | 40.0% | |
| CAGCAAGTCAAACAGGATTT+CGG | + | chr6_1:28661029-28661048 | Msa0881470:CDS | 40.0% | |
| AGCAAGTCAAACAGGATTTC+GGG | + | chr6_1:28661030-28661049 | Msa0881470:CDS | 40.0% | |
| TCAACCTTTGCAAGATTGTC+AGG | + | chr6_1:28661117-28661136 | Msa0881470:CDS | 40.0% | |
| GTTATCTTCGAACTCTTTGC+AGG | + | chr6_1:28661316-28661335 | Msa0881470:intron | 40.0% | |
| ATATCAATCGCTCAACGCTT+TGG | - | chr6_1:28661485-28661504 | None:intergenic | 40.0% | |
| !! | TCTTTCTGGTTGGATGGTTA+AGG | + | chr6_1:28661527-28661546 | Msa0881470:CDS | 40.0% |
| !! | GAGCCTTTGGAATAAAGTGA+CGG | - | chr6_1:28661591-28661610 | None:intergenic | 40.0% |
| ATCAGACCAATGAAGAGCAA+GGG | + | chr6_1:28661733-28661752 | Msa0881470:CDS | 40.0% | |
| ACCGGTCTGATAATAAGACA+AGG | + | chr6_1:28661862-28661881 | Msa0881470:CDS | 40.0% | |
| CAATTGGACTCTGAACAAGT+GGG | - | chr6_1:28661908-28661927 | None:intergenic | 40.0% | |
| ACAATTGGACTCTGAACAAG+TGG | - | chr6_1:28661909-28661928 | None:intergenic | 40.0% | |
| ! | TGACTCTGATGATGATGATG+AGG | + | chr6_1:28662115-28662134 | Msa0881470:CDS | 40.0% |
| GATGATGAGGTAACAAGTAC+GGG | + | chr6_1:28662128-28662147 | Msa0881470:CDS | 40.0% | |
| ! | TTTTATCGGCCAATGGAGAA+TGG | - | chr6_1:28662154-28662173 | None:intergenic | 40.0% |
| ATTCTCCATTGGCCGATAAA+AGG | + | chr6_1:28662153-28662172 | Msa0881470:CDS | 40.0% | |
| ! | TAAGTCCTTTTATCGGCCAA+TGG | - | chr6_1:28662161-28662180 | None:intergenic | 40.0% |
| !! | AAGCACAAGTTGATTGATGG+TGG | + | chr6_1:28662245-28662264 | Msa0881470:CDS | 40.0% |
| !! | AGCACAAGTTGATTGATGGT+GGG | + | chr6_1:28662246-28662265 | Msa0881470:CDS | 40.0% |
| GAAGATAATTCAGCAGCAGT+TGG | + | chr6_1:28662395-28662414 | Msa0881470:CDS | 40.0% | |
| ATTCTCGAGAAGTTAACTCC+TGG | + | chr6_1:28662461-28662480 | Msa0881470:CDS | 40.0% | |
| AAGTTAACTCCTGGAGCAAA+AGG | + | chr6_1:28662470-28662489 | Msa0881470:CDS | 40.0% | |
| TGGAATGGAAAGAGAGAGTG+AGG | - | chr6_1:28659810-28659829 | None:intergenic | 45.0% | |
| CGTACTTTCTTTGCTTGCCA+TGG | + | chr6_1:28659993-28660012 | Msa0881470:intron | 45.0% | |
| AGGAACAAATCAGCATGCGT+TGG | + | chr6_1:28660857-28660876 | Msa0881470:five_prime_UTR | 45.0% | |
| ! | ACAAATCAGCATGCGTTGGT+TGG | + | chr6_1:28660861-28660880 | Msa0881470:five_prime_UTR | 45.0% |
| !! | CAAATCAGCATGCGTTGGTT+GGG | + | chr6_1:28660862-28660881 | Msa0881470:five_prime_UTR | 45.0% |
| TCTCTAGATCATCGTTCTCG+TGG | + | chr6_1:28660942-28660961 | Msa0881470:five_prime_UTR | 45.0% | |
| CTGACCTGACAATCTTGCAA+AGG | - | chr6_1:28661124-28661143 | None:intergenic | 45.0% | |
| ! | TGGCCGTCACTTTATTCCAA+AGG | + | chr6_1:28661585-28661604 | Msa0881470:CDS | 45.0% |
| TAACCACACAAACTGGGATC+CGG | - | chr6_1:28661621-28661640 | None:intergenic | 45.0% | |
| TCCCAGTTTGTGTGGTTACT+CGG | + | chr6_1:28661623-28661642 | Msa0881470:CDS | 45.0% | |
| ! | TCGGGAAAAGTGCATGTACT+AGG | - | chr6_1:28661660-28661679 | None:intergenic | 45.0% |
| ! | ACATGCACTTTTCCCGATGT+CGG | + | chr6_1:28661663-28661682 | Msa0881470:CDS | 45.0% |
| TCTGATCAGTCAGCAAGCTT+GGG | - | chr6_1:28661719-28661738 | None:intergenic | 45.0% | |
| GATCAGACCAATGAAGAGCA+AGG | + | chr6_1:28661732-28661751 | Msa0881470:CDS | 45.0% | |
| AAGGAACCCTTGCTCTTCAT+TGG | - | chr6_1:28661742-28661761 | None:intergenic | 45.0% | |
| !!! | GTTCTGTTTTGGGATCCTGA+AGG | - | chr6_1:28661761-28661780 | None:intergenic | 45.0% |
| TCTGAACAAGTGGGAAGACA+GGG | - | chr6_1:28661899-28661918 | None:intergenic | 45.0% | |
| AGAACAAATCGAGGACACAG+AGG | + | chr6_1:28662190-28662209 | Msa0881470:CDS | 45.0% | |
| !! | AGGATACTGCTAGCTCTGAT+TGG | + | chr6_1:28662213-28662232 | Msa0881470:CDS | 45.0% |
| ! | GCTGAATCGAAGCATTCTGA+TGG | + | chr6_1:28662344-28662363 | Msa0881470:CDS | 45.0% |
| GTTTCATCGATGACTAGCAG+TGG | - | chr6_1:28662503-28662522 | None:intergenic | 45.0% | |
| ATATTTCACCCCAAGCATGC+CGG | - | chr6_1:28662558-28662577 | None:intergenic | 45.0% | |
| !! | TTAATATTAATTACAAAATT+AGG | + | chr6_1:28660038-28660057 | Msa0881470:intron | 5.0% |
| !! | TTATTAAAAAAAACAAAAAT+TGG | - | chr6_1:28661174-28661193 | None:intergenic | 5.0% |
| ! | ACTGGGTTGAGACCCTGTTT+GGG | + | chr6_1:28660100-28660119 | Msa0881470:intron | 50.0% |
| CACATAGGGCCTGTTTGGAT+TGG | - | chr6_1:28660354-28660373 | None:intergenic | 50.0% | |
| AAGCTCACATAGGGCCTGTT+TGG | - | chr6_1:28660359-28660378 | None:intergenic | 50.0% | |
| TACGTGACCGCATGCAATTG+TGG | + | chr6_1:28660585-28660604 | Msa0881470:intron | 50.0% | |
| ACTGCAGCCACAATTGCATG+CGG | - | chr6_1:28660595-28660614 | None:intergenic | 50.0% | |
| CTGGAGATCTCAACGAACAC+AGG | + | chr6_1:28660837-28660856 | Msa0881470:five_prime_UTR | 50.0% | |
| GCCGAGTAACCACACAAACT+GGG | - | chr6_1:28661627-28661646 | None:intergenic | 50.0% | |
| TGCCGAGTAACCACACAAAC+TGG | - | chr6_1:28661628-28661647 | None:intergenic | 50.0% | |
| ! | TCCTGGAAATGCACCGACAT+CGG | - | chr6_1:28661679-28661698 | None:intergenic | 50.0% |
| CTGATCAGTCAGCAAGCTTG+GGG | - | chr6_1:28661718-28661737 | None:intergenic | 50.0% | |
| GTCTGATCAGTCAGCAAGCT+TGG | - | chr6_1:28661720-28661739 | None:intergenic | 50.0% | |
| TGAAGAGCAAGGGTTCCTTC+AGG | + | chr6_1:28661743-28661762 | Msa0881470:CDS | 50.0% | |
| CTCTGAACAAGTGGGAAGAC+AGG | - | chr6_1:28661900-28661919 | None:intergenic | 50.0% | |
| TTTGCCTGAAGAGTCAGAGC+AGG | + | chr6_1:28662016-28662035 | Msa0881470:CDS | 50.0% | |
| TGATCCTGCTCTGACTCTTC+AGG | - | chr6_1:28662023-28662042 | None:intergenic | 50.0% | |
| AAGTACGGGCCATTCTCCAT+TGG | + | chr6_1:28662142-28662161 | Msa0881470:CDS | 50.0% | |
| ACAAATCGAGGACACAGAGG+AGG | + | chr6_1:28662193-28662212 | Msa0881470:CDS | 50.0% | |
| GAACTAGCACTGTCTACGAG+TGG | - | chr6_1:28662287-28662306 | None:intergenic | 50.0% | |
| ! | GGATGCTTTCCTTTTGCTCC+AGG | - | chr6_1:28662482-28662501 | None:intergenic | 50.0% |
| ! | GACTGGGTTGAGACCCTGTT+TGG | + | chr6_1:28660099-28660118 | Msa0881470:intron | 55.0% |
| GGACGAGCAGCAAGTCAAAC+AGG | + | chr6_1:28661022-28661041 | Msa0881470:CDS | 55.0% | |
| TGGTTAAGGCCCACGAGTCT+TGG | + | chr6_1:28661541-28661560 | Msa0881470:CDS | 55.0% | |
| TAAAGTGACGGCCAAGCCAC+AGG | - | chr6_1:28661579-28661598 | None:intergenic | 55.0% | |
| ! | CCTGGAAATGCACCGACATC+GGG | - | chr6_1:28661678-28661697 | None:intergenic | 55.0% |
| GTAGCAGGAGCTGTGAATCC+TGG | - | chr6_1:28661696-28661715 | None:intergenic | 55.0% | |
| CTAGCACTGTCTACGAGTGG+TGG | - | chr6_1:28662284-28662303 | None:intergenic | 55.0% | |
| ATGTCCCAAACCGGCATGCT+TGG | + | chr6_1:28662545-28662564 | Msa0881470:CDS | 55.0% | |
| TGTCCCAAACCGGCATGCTT+GGG | + | chr6_1:28662546-28662565 | Msa0881470:CDS | 55.0% | |
| TGGGCAAGGCCAAGACTCGT+GGG | - | chr6_1:28661553-28661572 | None:intergenic | 60.0% | |
| ACAAACTGGGATCCGGCGTG+GGG | - | chr6_1:28661614-28661633 | None:intergenic | 60.0% | |
| CACAAACTGGGATCCGGCGT+GGG | - | chr6_1:28661615-28661634 | None:intergenic | 60.0% | |
| ACACAAACTGGGATCCGGCG+TGG | - | chr6_1:28661616-28661635 | None:intergenic | 60.0% | |
| ACGCCGGATCCCAGTTTGTG+TGG | + | chr6_1:28661615-28661634 | Msa0881470:CDS | 60.0% | |
| CCCGATGTCGGTGCATTTCC+AGG | + | chr6_1:28661675-28661694 | Msa0881470:CDS | 60.0% | |
| GTCAGCAAGCTTGGGGTAGC+AGG | - | chr6_1:28661711-28661730 | None:intergenic | 60.0% | |
| GTCCCAAACCGGCATGCTTG+GGG | + | chr6_1:28662547-28662566 | Msa0881470:CDS | 60.0% | |
| !! | CACCCCAAGCATGCCGGTTT+GGG | - | chr6_1:28662552-28662571 | None:intergenic | 60.0% |
| ! | TCACCCCAAGCATGCCGGTT+TGG | - | chr6_1:28662553-28662572 | None:intergenic | 60.0% |
| TGCGCGTGCTTGTGCTTGCG+AGG | - | chr6_1:28659784-28659803 | None:intergenic | 65.0% | |
| GTGGGCAAGGCCAAGACTCG+TGG | - | chr6_1:28661554-28661573 | None:intergenic | 65.0% | |
| !! | TTGGCCTTGCCCACAGCCTG+TGG | + | chr6_1:28661560-28661579 | Msa0881470:CDS | 65.0% |
| CAAGCCACAGGCTGTGGGCA+AGG | - | chr6_1:28661567-28661586 | None:intergenic | 65.0% | |
| CTTGCCCACAGCCTGTGGCT+TGG | + | chr6_1:28661565-28661584 | Msa0881470:CDS | 65.0% | |
| ACGGCCAAGCCACAGGCTGT+GGG | - | chr6_1:28661572-28661591 | None:intergenic | 65.0% | |
| TTCCAAAGGCTCCCCCACGC+CGG | + | chr6_1:28661599-28661618 | Msa0881470:CDS | 65.0% | |
| CAAACTGGGATCCGGCGTGG+GGG | - | chr6_1:28661613-28661632 | None:intergenic | 65.0% | |
| GACGGCCAAGCCACAGGCTG+TGG | - | chr6_1:28661573-28661592 | None:intergenic | 70.0% | |
| ATCCGGCGTGGGGGAGCCTT+TGG | - | chr6_1:28661604-28661623 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 28659690 | 28662580 | 28659690 | ID=Msa0881470;Name=Msa0881470 |
| chr6_1 | mRNA | 28659690 | 28662580 | 28659690 | ID=Msa0881470-mRNA-1;Parent=Msa0881470;Name=Msa0881470-mRNA-1;_AED=0.19;_eAED=0.25;_QI=338|0.66|0.75|1|0.33|0|4|0|429 |
| chr6_1 | exon | 28659690 | 28659714 | 28659690 | ID=Msa0881470-mRNA-1:exon:7281;Parent=Msa0881470-mRNA-1 |
| chr6_1 | exon | 28659736 | 28659837 | 28659736 | ID=Msa0881470-mRNA-1:exon:7282;Parent=Msa0881470-mRNA-1 |
| chr6_1 | exon | 28660805 | 28661138 | 28660805 | ID=Msa0881470-mRNA-1:exon:7283;Parent=Msa0881470-mRNA-1 |
| chr6_1 | exon | 28661417 | 28662580 | 28661417 | ID=Msa0881470-mRNA-1:exon:7284;Parent=Msa0881470-mRNA-1 |
| chr6_1 | five_prime_UTR | 28659690 | 28659714 | 28659690 | ID=Msa0881470-mRNA-1:five_prime_utr;Parent=Msa0881470-mRNA-1 |
| chr6_1 | five_prime_UTR | 28659736 | 28659837 | 28659736 | ID=Msa0881470-mRNA-1:five_prime_utr;Parent=Msa0881470-mRNA-1 |
| chr6_1 | five_prime_UTR | 28660805 | 28661015 | 28660805 | ID=Msa0881470-mRNA-1:five_prime_utr;Parent=Msa0881470-mRNA-1 |
| chr6_1 | CDS | 28661016 | 28661138 | 28661016 | ID=Msa0881470-mRNA-1:cds;Parent=Msa0881470-mRNA-1 |
| chr6_1 | CDS | 28661417 | 28662580 | 28661417 | ID=Msa0881470-mRNA-1:cds;Parent=Msa0881470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
