Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189960 | XP_024632022.1 | 94.813 | 347 | 15 | 2 | 83 | 429 | 1 | 344 | 0.0 | 648 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189960 | sp|Q9FY69|BH143_ARATH | 34.926 | 272 | 143 | 12 | 164 | 423 | 73 | 322 | 1.53e-22 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189960 | G7IPM5 | 94.813 | 347 | 15 | 2 | 83 | 429 | 1 | 344 | 0.0 | 648 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0189960 | Msa0191990 | 0.802327 | 5.913437e-49 | -8.615850e-47 |
| Msa0189960 | Msa0581570 | 0.808904 | 2.462740e-50 | -8.615850e-47 |
| Msa0189960 | Msa0881470 | 0.977228 | 2.310897e-143 | -8.615850e-47 |
| Msa0189960 | Msa1123560 | 0.862664 | 4.318424e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189960 | MtrunA17_Chr2g0279491 | 94.813 | 347 | 15 | 2 | 83 | 429 | 1 | 344 | 0.0 | 648 |
| Msa0189960 | MtrunA17_Chr5g0427141 | 31.858 | 339 | 184 | 14 | 127 | 426 | 47 | 377 | 3.86e-26 | 108 |
| Msa0189960 | MtrunA17_Chr2g0279501 | 90.909 | 44 | 4 | 0 | 1 | 44 | 1 | 44 | 2.95e-23 | 92.0 |
| Msa0189960 | MtrunA17_Chr5g0427151 | 68.182 | 44 | 14 | 0 | 1 | 44 | 1 | 44 | 6.43e-13 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189960 | AT5G09460.1 | 34.926 | 272 | 143 | 12 | 164 | 423 | 73 | 322 | 1.56e-23 | 100 |
| Msa0189960 | AT5G64340.1 | 36.214 | 243 | 117 | 9 | 183 | 417 | 97 | 309 | 2.12e-23 | 100 |
| Msa0189960 | AT5G50010.1 | 28.058 | 278 | 138 | 13 | 152 | 417 | 75 | 302 | 1.04e-11 | 65.9 |
Find 112 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCAAACATGGTTCTGTTT+TGG | 0.175141 | 2_1:+5398732 | None:intergenic |
| AACGCTTTGGTTCTTTGATA+TGG | 0.214409 | 2_1:+5399032 | None:intergenic |
| CCCGATGTCGGTGCATTTCC+AGG | 0.219573 | 2_1:-5398826 | Msa0189960:CDS |
| CGATTGATATATTGTTCTTT+AGG | 0.235862 | 2_1:-5399006 | Msa0189960:CDS |
| CACCCCAAGCATGCCGGTTT+GGG | 0.281338 | 2_1:+5397952 | None:intergenic |
| ATTCTCCATTGGCCGATAAA+AGG | 0.283896 | 2_1:-5398348 | Msa0189960:CDS |
| CAGCAAGTCAAACAGGATTT+CGG | 0.294244 | 2_1:-5399473 | Msa0189960:CDS |
| GGACATAACTTAAGTGATTC+TGG | 0.298221 | 2_1:-5399684 | Msa0189960:five_prime_UTR |
| TGCCGAGTAACCACACAAAC+TGG | 0.316885 | 2_1:+5398876 | None:intergenic |
| TGAATTAGCAGTACCTCTTT+TGG | 0.335511 | 2_1:-5400733 | Msa0189960:intron |
| TGGTGATAACCAATTGAAAA+AGG | 0.339054 | 2_1:-5398086 | Msa0189960:CDS |
| GAAAGACATGCAACTAATTT+CGG | 0.351226 | 2_1:-5398532 | Msa0189960:CDS |
| AAGGAACCCTTGCTCTTCAT+TGG | 0.352750 | 2_1:+5398762 | None:intergenic |
| AGCAAGTCAAACAGGATTTC+GGG | 0.359421 | 2_1:-5399472 | Msa0189960:CDS |
| GTCAGCAAGCTTGGGGTAGC+AGG | 0.362679 | 2_1:+5398793 | None:intergenic |
| TCTTTCTGGTTGGATGGTTA+AGG | 0.369694 | 2_1:-5398974 | Msa0189960:CDS |
| TCTTCAGGCAAACTGTATTT+CGG | 0.374118 | 2_1:+5398496 | None:intergenic |
| ATTATCTTCTTCAGTTTGTC+TGG | 0.375885 | 2_1:+5398120 | None:intergenic |
| TCACCCCAAGCATGCCGGTT+TGG | 0.375945 | 2_1:+5397951 | None:intergenic |
| ACGCTTTGGTTCTTTGATAT+GGG | 0.376134 | 2_1:+5399033 | None:intergenic |
| CGAGAATTCTCAATGTTTCA+CGG | 0.378250 | 2_1:+5398056 | None:intergenic |
| TTTGTCTGGCAAAATACATT+TGG | 0.380415 | 2_1:+5398134 | None:intergenic |
| TTTAGATTAACTGAGTAGTT+TGG | 0.390250 | 2_1:-5399524 | Msa0189960:five_prime_UTR |
| GACGGCCAAGCCACAGGCTG+TGG | 0.391458 | 2_1:+5398931 | None:intergenic |
| GTCTGATCAGTCAGCAAGCT+TGG | 0.394597 | 2_1:+5398784 | None:intergenic |
| TGATCCTGCTCTGACTCTTC+AGG | 0.400292 | 2_1:+5398481 | None:intergenic |
| TCAACCTTTGCAAGATTGTC+AGG | 0.400374 | 2_1:-5399385 | Msa0189960:intron |
| TGTCCCAAACCGGCATGCTT+GGG | 0.402671 | 2_1:-5397955 | Msa0189960:CDS |
| ATGTCCCAAACCGGCATGCT+TGG | 0.403848 | 2_1:-5397956 | Msa0189960:CDS |
| ATCACTCTAACAATTATTGT+TGG | 0.407189 | 2_1:+5399417 | None:intergenic |
| AAACATTGTAATGGCATTGA+AGG | 0.416641 | 2_1:-5399444 | Msa0189960:CDS |
| ATATCAATCGCTCAACGCTT+TGG | 0.417429 | 2_1:+5399019 | None:intergenic |
| TCTGATCAGTCAGCAAGCTT+GGG | 0.421201 | 2_1:+5398785 | None:intergenic |
| TAAAGGGTAAAAGGGAGAAT+TGG | 0.422332 | 2_1:-5400779 | None:intergenic |
| CTCTGAACAAGTGGGAAGAC+AGG | 0.423360 | 2_1:+5398604 | None:intergenic |
| TCAAGCTTATGATGTAAATC+AGG | 0.424341 | 2_1:-5398554 | Msa0189960:CDS |
| GGACGAGCAGCAAGTCAAAC+AGG | 0.430378 | 2_1:-5399480 | Msa0189960:CDS |
| CTTGCCCACAGCCTGTGGCT+TGG | 0.438437 | 2_1:-5398936 | Msa0189960:CDS |
| TCCCAGTTTGTGTGGTTACT+CGG | 0.446760 | 2_1:-5398878 | Msa0189960:CDS |
| GAAAAGACTTACAGATGGAT+TGG | 0.452483 | 2_1:+5400631 | None:intergenic |
| CCTGGAAATGCACCGACATC+GGG | 0.453130 | 2_1:+5398826 | None:intergenic |
| CGGGCATTAAAACATTGTAA+TGG | 0.458411 | 2_1:-5399453 | Msa0189960:CDS |
| AAGTTAACTCCTGGAGCAAA+AGG | 0.460584 | 2_1:-5398031 | Msa0189960:CDS |
| CACAAACTGGGATCCGGCGT+GGG | 0.461869 | 2_1:+5398889 | None:intergenic |
| TGGAATGGAAAGAGAGAGTG+AGG | 0.463443 | 2_1:+5400651 | None:intergenic |
| CAAATCAGCATGCGTTGGTT+GGG | 0.463796 | 2_1:-5399640 | Msa0189960:five_prime_UTR |
| TGAAGAGCAAGGGTTCCTTC+AGG | 0.467207 | 2_1:-5398758 | Msa0189960:CDS |
| ACAAATCAGCATGCGTTGGT+TGG | 0.469250 | 2_1:-5399641 | Msa0189960:five_prime_UTR |
| GTAGCAGGAGCTGTGAATCC+TGG | 0.469952 | 2_1:+5398808 | None:intergenic |
| TCTTGTTTCAGGAAAATTTG+TGG | 0.470342 | 2_1:-5399708 | Msa0189960:intron |
| TTATGTGCTGCTTTCAAACA+TGG | 0.478093 | 2_1:+5398721 | None:intergenic |
| TTGGCCTTGCCCACAGCCTG+TGG | 0.480119 | 2_1:-5398941 | Msa0189960:CDS |
| AAATCTTTGATGTCCCAAAC+CGG | 0.490129 | 2_1:-5397965 | Msa0189960:CDS |
| TTGGTAAGAATCAAAAGTTA+TGG | 0.490345 | 2_1:-5399505 | Msa0189960:exon |
| AATTGTGTAGTAGTAACAAT+TGG | 0.490535 | 2_1:+5398580 | None:intergenic |
| TCGGGAAAAGTGCATGTACT+AGG | 0.492334 | 2_1:+5398844 | None:intergenic |
| AGGATACTGCTAGCTCTGAT+TGG | 0.496152 | 2_1:-5398288 | Msa0189960:CDS |
| GTGGGCAAGGCCAAGACTCG+TGG | 0.499702 | 2_1:+5398950 | None:intergenic |
| TGGTTAAGGCCCACGAGTCT+TGG | 0.503846 | 2_1:-5398960 | Msa0189960:CDS |
| TCCTGGAAATGCACCGACAT+CGG | 0.507953 | 2_1:+5398825 | None:intergenic |
| AGAAATTTATTATCTTTGAC+CGG | 0.509368 | 2_1:-5398657 | Msa0189960:CDS |
| TGGCCGTCACTTTATTCCAA+AGG | 0.514084 | 2_1:-5398916 | Msa0189960:CDS |
| CAAGCCACAGGCTGTGGGCA+AGG | 0.517815 | 2_1:+5398937 | None:intergenic |
| TAAAGTGACGGCCAAGCCAC+AGG | 0.532373 | 2_1:+5398925 | None:intergenic |
| ACAAACTGGGATCCGGCGTG+GGG | 0.534438 | 2_1:+5398890 | None:intergenic |
| TGATGATGAGGTAACAAGTA+CGG | 0.535186 | 2_1:-5398374 | Msa0189960:CDS |
| ATTTAGAAAATGTCCAAAAG+AGG | 0.536774 | 2_1:+5400720 | None:intergenic |
| TAACCACACAAACTGGGATC+CGG | 0.537805 | 2_1:+5398883 | None:intergenic |
| GATGATGAGGTAACAAGTAC+GGG | 0.539387 | 2_1:-5398373 | Msa0189960:CDS |
| ACACAAACTGGGATCCGGCG+TGG | 0.547985 | 2_1:+5398888 | None:intergenic |
| ATTCTCGAGAAGTTAACTCC+TGG | 0.553958 | 2_1:-5398040 | Msa0189960:CDS |
| ACAATTGGACTCTGAACAAG+TGG | 0.554080 | 2_1:+5398595 | None:intergenic |
| ACCTTGTCTTATTATCAGAC+CGG | 0.556624 | 2_1:+5398638 | None:intergenic |
| CTCAGTTAATCTAAACGCAA+TGG | 0.559259 | 2_1:+5399532 | None:intergenic |
| AAGTACGGGCCATTCTCCAT+TGG | 0.565316 | 2_1:-5398359 | Msa0189960:CDS |
| AATTCAAGCGTACAACTTGG+CGG | 0.565818 | 2_1:+5399599 | None:intergenic |
| TGCGCGTGCTTGTGCTTGCG+AGG | 0.565990 | 2_1:+5400677 | None:intergenic |
| AAGCACAAGTTGATTGATGG+TGG | 0.566047 | 2_1:-5398256 | Msa0189960:CDS |
| TCTCTAGATCATCGTTCTCG+TGG | 0.566678 | 2_1:-5399560 | Msa0189960:five_prime_UTR |
| TTTGCCTGAAGAGTCAGAGC+AGG | 0.567684 | 2_1:-5398485 | Msa0189960:CDS |
| TGGGCAAGGCCAAGACTCGT+GGG | 0.572098 | 2_1:+5398951 | None:intergenic |
| ACGCCGGATCCCAGTTTGTG+TGG | 0.581979 | 2_1:-5398886 | Msa0189960:CDS |
| ACGGCCAAGCCACAGGCTGT+GGG | 0.582071 | 2_1:+5398932 | None:intergenic |
| CTGATCAGTCAGCAAGCTTG+GGG | 0.586521 | 2_1:+5398786 | None:intergenic |
| TAAGAATCAAAAGTTATGGT+AGG | 0.587469 | 2_1:-5399501 | Msa0189960:exon |
| GAAGATAATTCAGCAGCAGT+TGG | 0.590809 | 2_1:-5398106 | Msa0189960:CDS |
| GCCGAGTAACCACACAAACT+GGG | 0.596870 | 2_1:+5398877 | None:intergenic |
| GTCCCAAACCGGCATGCTTG+GGG | 0.597778 | 2_1:-5397954 | Msa0189960:CDS |
| GACTTACAGATGGATTGGAA+TGG | 0.603437 | 2_1:+5400636 | None:intergenic |
| TCTGAACAAGTGGGAAGACA+GGG | 0.607368 | 2_1:+5398605 | None:intergenic |
| ATATTTCACCCCAAGCATGC+CGG | 0.607409 | 2_1:+5397946 | None:intergenic |
| CTGACCTGACAATCTTGCAA+AGG | 0.607594 | 2_1:+5399381 | None:intergenic |
| GATCAGACCAATGAAGAGCA+AGG | 0.613816 | 2_1:-5398769 | Msa0189960:CDS |
| AGGAACAAATCAGCATGCGT+TGG | 0.613837 | 2_1:-5399645 | Msa0189960:five_prime_UTR |
| ATAAATTCAAGCGTACAACT+TGG | 0.613947 | 2_1:+5399596 | None:intergenic |
| CTGGAGATCTCAACGAACAC+AGG | 0.613970 | 2_1:-5399665 | Msa0189960:five_prime_UTR |
| CAAACTGGGATCCGGCGTGG+GGG | 0.624572 | 2_1:+5398891 | None:intergenic |
| ATCAGACCAATGAAGAGCAA+GGG | 0.626049 | 2_1:-5398768 | Msa0189960:CDS |
| TGTTTCAGGAAAATTTGTGG+AGG | 0.628575 | 2_1:-5399705 | Msa0189960:intron |
| AGCACAAGTTGATTGATGGT+GGG | 0.632895 | 2_1:-5398255 | Msa0189960:CDS |
| CTAGCACTGTCTACGAGTGG+TGG | 0.637309 | 2_1:+5398220 | None:intergenic |
| TTTGATACAAGAACAAATCG+AGG | 0.637624 | 2_1:-5398320 | Msa0189960:CDS |
| GTTTCATCGATGACTAGCAG+TGG | 0.639667 | 2_1:+5398001 | None:intergenic |
| GAGCCTTTGGAATAAAGTGA+CGG | 0.640143 | 2_1:+5398913 | None:intergenic |
| TGACTCTGATGATGATGATG+AGG | 0.659151 | 2_1:-5398386 | Msa0189960:CDS |
| GCTGAATCGAAGCATTCTGA+TGG | 0.665799 | 2_1:-5398157 | Msa0189960:CDS |
| ACAAATCGAGGACACAGAGG+AGG | 0.670161 | 2_1:-5398308 | Msa0189960:CDS |
| GAAAGCAGCACATAATAACA+TGG | 0.675231 | 2_1:-5398713 | Msa0189960:CDS |
| ACCGGTCTGATAATAAGACA+AGG | 0.684713 | 2_1:-5398639 | Msa0189960:CDS |
| GAACTAGCACTGTCTACGAG+TGG | 0.697232 | 2_1:+5398217 | None:intergenic |
| CAATTGGACTCTGAACAAGT+GGG | 0.729133 | 2_1:+5398596 | None:intergenic |
| AGAACAAATCGAGGACACAG+AGG | 0.739585 | 2_1:-5398311 | Msa0189960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATTTGAATAAGAAAAATT+AGG | - | chr2_1:5398684-5398703 | Msa0189960:CDS | 15.0% |
| !! | AATAAGAAAAATTAGGAAAA+AGG | - | chr2_1:5398691-5398710 | Msa0189960:CDS | 15.0% |
| !! | ATAAGAAAAATTAGGAAAAA+GGG | - | chr2_1:5398692-5398711 | Msa0189960:CDS | 15.0% |
| !! | ATTACAAAATTAGGAATTTC+AGG | - | chr2_1:5398300-5398319 | Msa0189960:CDS | 20.0% |
| !! | AAAAAAATGAATGTTTGAGT+TGG | - | chr2_1:5398745-5398764 | Msa0189960:CDS | 20.0% |
| !!! | ACTTTAATTTTGAGAGATTT+TGG | - | chr2_1:5398911-5398930 | Msa0189960:CDS | 20.0% |
| !! | AATTCTTGACATGATTATTA+AGG | - | chr2_1:5399402-5399421 | Msa0189960:CDS | 20.0% |
| !! | AGAAATTTATTATCTTTGAC+CGG | - | chr2_1:5400054-5400073 | Msa0189960:intron | 20.0% |
| !!! | TATCAAATAAGTCCTTTTAT+CGG | + | chr2_1:5400378-5400397 | None:intergenic | 20.0% |
| ! | ATTTAGAAAATGTCCAAAAG+AGG | + | chr2_1:5397994-5398013 | None:intergenic | 25.0% |
| ! | TTCTTATGTACTTCATTTCT+CGG | - | chr2_1:5398150-5398169 | Msa0189960:CDS | 25.0% |
| ! | TCTTATTCAAATTGAAGAGA+AGG | + | chr2_1:5398678-5398697 | None:intergenic | 25.0% |
| ! | AATAACTAATGTGACAAACA+AGG | + | chr2_1:5398866-5398885 | None:intergenic | 25.0% |
| !! | GTATGATATAATCTTGTTTC+AGG | - | chr2_1:5398992-5399011 | Msa0189960:CDS | 25.0% |
| ! | TTTAGATTAACTGAGTAGTT+TGG | - | chr2_1:5399187-5399206 | Msa0189960:intron | 25.0% |
| ! | TTGGTAAGAATCAAAAGTTA+TGG | - | chr2_1:5399206-5399225 | Msa0189960:intron | 25.0% |
| ! | TAAGAATCAAAAGTTATGGT+AGG | - | chr2_1:5399210-5399229 | Msa0189960:intron | 25.0% |
| ! | ATCACTCTAACAATTATTGT+TGG | + | chr2_1:5399297-5399316 | None:intergenic | 25.0% |
| !!! | CATTCATTTTTTCTTAAAGC+TGG | - | chr2_1:5399595-5399614 | Msa0189960:five_prime_UTR | 25.0% |
| ! | CGATTGATATATTGTTCTTT+AGG | - | chr2_1:5399705-5399724 | Msa0189960:intron | 25.0% |
| !!! | TTAGGATCTTTTTTTCTTTC+TGG | - | chr2_1:5399723-5399742 | Msa0189960:intron | 25.0% |
| ! | AATTGTGTAGTAGTAACAAT+TGG | + | chr2_1:5400134-5400153 | None:intergenic | 25.0% |
| !!! | GGATTTTATCCTTTTTCAAT+TGG | + | chr2_1:5400637-5400656 | None:intergenic | 25.0% |
| GAATTGAAAAGACTTACAGA+TGG | + | chr2_1:5398088-5398107 | None:intergenic | 30.0% | |
| !! | ACTAGAATTCTGAAATTCCA+TGG | + | chr2_1:5398266-5398285 | None:intergenic | 30.0% |
| ! | GCATATTTGAGTTTATATGC+TGG | + | chr2_1:5398585-5398604 | None:intergenic | 30.0% |
| CCACAATAAGATATCTAAAG+AGG | + | chr2_1:5398635-5398654 | None:intergenic | 30.0% | |
| CCTCTTTAGATATCTTATTG+TGG | - | chr2_1:5398632-5398651 | Msa0189960:CDS | 30.0% | |
| ! | AATTGAAGAGAAGGTCATTT+TGG | + | chr2_1:5398669-5398688 | None:intergenic | 30.0% |
| ! | TCTTGTTTCAGGAAAATTTG+TGG | - | chr2_1:5399003-5399022 | Msa0189960:CDS | 30.0% |
| ATAAATTCAAGCGTACAACT+TGG | + | chr2_1:5399118-5399137 | None:intergenic | 30.0% | |
| ! | AAACATTGTAATGGCATTGA+AGG | - | chr2_1:5399267-5399286 | Msa0189960:intron | 30.0% |
| ! | AGTAATGTGTTGCTAATTCT+TGG | - | chr2_1:5399351-5399370 | Msa0189960:intron | 30.0% |
| !!! | GATCTTTTTTTCTTTCTGGT+TGG | - | chr2_1:5399727-5399746 | Msa0189960:intron | 30.0% |
| !!! | TTTTTTTCTTTCTGGTTGGA+TGG | - | chr2_1:5399731-5399750 | Msa0189960:intron | 30.0% |
| !! | TTCAAACATGGTTCTGTTTT+GGG | + | chr2_1:5399981-5400000 | None:intergenic | 30.0% |
| !! | TTTCAAACATGGTTCTGTTT+TGG | + | chr2_1:5399982-5400001 | None:intergenic | 30.0% |
| AATTTCTTCTGCAAAAATGC+AGG | + | chr2_1:5400041-5400060 | None:intergenic | 30.0% | |
| TCAAGCTTATGATGTAAATC+AGG | - | chr2_1:5400157-5400176 | Msa0189960:intron | 30.0% | |
| GAAAGACATGCAACTAATTT+CGG | - | chr2_1:5400179-5400198 | Msa0189960:intron | 30.0% | |
| TTTGATACAAGAACAAATCG+AGG | - | chr2_1:5400391-5400410 | Msa0189960:intron | 30.0% | |
| !! | ATCAACTTGTGCTTTTTGTT+TGG | + | chr2_1:5400449-5400468 | None:intergenic | 30.0% |
| !! | AAAAAGCACAAGTTGATTGA+TGG | - | chr2_1:5400452-5400471 | Msa0189960:intron | 30.0% |
| TTTGTCTGGCAAAATACATT+TGG | + | chr2_1:5400580-5400599 | None:intergenic | 30.0% | |
| ATTATCTTCTTCAGTTTGTC+TGG | + | chr2_1:5400594-5400613 | None:intergenic | 30.0% | |
| TGGTGATAACCAATTGAAAA+AGG | - | chr2_1:5400625-5400644 | Msa0189960:intron | 30.0% | |
| ! | TGAATTAGCAGTACCTCTTT+TGG | - | chr2_1:5397978-5397997 | Msa0189960:CDS | 35.0% |
| GAAAAGACTTACAGATGGAT+TGG | + | chr2_1:5398083-5398102 | None:intergenic | 35.0% | |
| TTAAGCAGTTTACCCAAACA+GGG | + | chr2_1:5398368-5398387 | None:intergenic | 35.0% | |
| ATTAAGCAGTTTACCCAAAC+AGG | + | chr2_1:5398369-5398388 | None:intergenic | 35.0% | |
| TCAAATATGCCAATCCAAAC+AGG | - | chr2_1:5398595-5398614 | Msa0189960:CDS | 35.0% | |
| !!! | AGGTCATTTTGGCTTAACAA+GGG | + | chr2_1:5398658-5398677 | None:intergenic | 35.0% |
| !!! | AAGGTCATTTTGGCTTAACA+AGG | + | chr2_1:5398659-5398678 | None:intergenic | 35.0% |
| TCAAAAAAAGCAGCAGAAGA+AGG | + | chr2_1:5398722-5398741 | None:intergenic | 35.0% | |
| TGTTTCAGGAAAATTTGTGG+AGG | - | chr2_1:5399006-5399025 | Msa0189960:CDS | 35.0% | |
| GGACATAACTTAAGTGATTC+TGG | - | chr2_1:5399027-5399046 | Msa0189960:CDS | 35.0% | |
| CTCAGTTAATCTAAACGCAA+TGG | + | chr2_1:5399182-5399201 | None:intergenic | 35.0% | |
| CGGGCATTAAAACATTGTAA+TGG | - | chr2_1:5399258-5399277 | Msa0189960:intron | 35.0% | |
| TGATAGGCTTAAGCAATTGA+CGG | + | chr2_1:5399562-5399581 | None:intergenic | 35.0% | |
| ATGCAGAACAGTTAAGTGAT+AGG | + | chr2_1:5399578-5399597 | None:intergenic | 35.0% | |
| !! | ACGCTTTGGTTCTTTGATAT+GGG | + | chr2_1:5399681-5399700 | None:intergenic | 35.0% |
| !! | AACGCTTTGGTTCTTTGATA+TGG | + | chr2_1:5399682-5399701 | None:intergenic | 35.0% |
| !! | TTATGTGCTGCTTTCAAACA+TGG | + | chr2_1:5399993-5400012 | None:intergenic | 35.0% |
| GAAAGCAGCACATAATAACA+TGG | - | chr2_1:5399998-5400017 | Msa0189960:intron | 35.0% | |
| ! | ACCTTGTCTTATTATCAGAC+CGG | + | chr2_1:5400076-5400095 | None:intergenic | 35.0% |
| TCTTCAGGCAAACTGTATTT+CGG | + | chr2_1:5400218-5400237 | None:intergenic | 35.0% | |
| ! | TGATGATGAGGTAACAAGTA+CGG | - | chr2_1:5400337-5400356 | Msa0189960:intron | 35.0% |
| CGAGAATTCTCAATGTTTCA+CGG | + | chr2_1:5400658-5400677 | None:intergenic | 35.0% | |
| AAATCTTTGATGTCCCAAAC+CGG | - | chr2_1:5400746-5400765 | Msa0189960:intron | 35.0% | |
| !! | GACTTACAGATGGATTGGAA+TGG | + | chr2_1:5398078-5398097 | None:intergenic | 40.0% |
| AAACTGAGCAGTAATCTGAC+TGG | - | chr2_1:5398335-5398354 | Msa0189960:CDS | 40.0% | |
| AACTGAGCAGTAATCTGACT+GGG | - | chr2_1:5398336-5398355 | Msa0189960:CDS | 40.0% | |
| !! | GCTGTTTTCGTAAGCTATCT+TGG | - | chr2_1:5398468-5398487 | Msa0189960:CDS | 40.0% |
| CTAAAGAGGAAGCTCACATA+GGG | + | chr2_1:5398621-5398640 | None:intergenic | 40.0% | |
| TCTAAAGAGGAAGCTCACAT+AGG | + | chr2_1:5398622-5398641 | None:intergenic | 40.0% | |
| AATTCAAGCGTACAACTTGG+CGG | + | chr2_1:5399115-5399134 | None:intergenic | 40.0% | |
| CAGCAAGTCAAACAGGATTT+CGG | - | chr2_1:5399238-5399257 | Msa0189960:intron | 40.0% | |
| AGCAAGTCAAACAGGATTTC+GGG | - | chr2_1:5399239-5399258 | Msa0189960:intron | 40.0% | |
| TCAACCTTTGCAAGATTGTC+AGG | - | chr2_1:5399326-5399345 | Msa0189960:intron | 40.0% | |
| GTTATCTTCGAACTCTTTGC+AGG | - | chr2_1:5399526-5399545 | Msa0189960:five_prime_UTR | 40.0% | |
| ATATCAATCGCTCAACGCTT+TGG | + | chr2_1:5399695-5399714 | None:intergenic | 40.0% | |
| !! | TCTTTCTGGTTGGATGGTTA+AGG | - | chr2_1:5399737-5399756 | Msa0189960:intron | 40.0% |
| !! | GAGCCTTTGGAATAAAGTGA+CGG | + | chr2_1:5399801-5399820 | None:intergenic | 40.0% |
| ATCAGACCAATGAAGAGCAA+GGG | - | chr2_1:5399943-5399962 | Msa0189960:intron | 40.0% | |
| ACCGGTCTGATAATAAGACA+AGG | - | chr2_1:5400072-5400091 | Msa0189960:intron | 40.0% | |
| CAATTGGACTCTGAACAAGT+GGG | + | chr2_1:5400118-5400137 | None:intergenic | 40.0% | |
| ACAATTGGACTCTGAACAAG+TGG | + | chr2_1:5400119-5400138 | None:intergenic | 40.0% | |
| ! | TGACTCTGATGATGATGATG+AGG | - | chr2_1:5400325-5400344 | Msa0189960:intron | 40.0% |
| GATGATGAGGTAACAAGTAC+GGG | - | chr2_1:5400338-5400357 | Msa0189960:intron | 40.0% | |
| ! | TTTTATCGGCCAATGGAGAA+TGG | + | chr2_1:5400364-5400383 | None:intergenic | 40.0% |
| ATTCTCCATTGGCCGATAAA+AGG | - | chr2_1:5400363-5400382 | Msa0189960:intron | 40.0% | |
| ! | TAAGTCCTTTTATCGGCCAA+TGG | + | chr2_1:5400371-5400390 | None:intergenic | 40.0% |
| !! | AAGCACAAGTTGATTGATGG+TGG | - | chr2_1:5400455-5400474 | Msa0189960:intron | 40.0% |
| !! | AGCACAAGTTGATTGATGGT+GGG | - | chr2_1:5400456-5400475 | Msa0189960:intron | 40.0% |
| GAAGATAATTCAGCAGCAGT+TGG | - | chr2_1:5400605-5400624 | Msa0189960:intron | 40.0% | |
| ATTCTCGAGAAGTTAACTCC+TGG | - | chr2_1:5400671-5400690 | Msa0189960:five_prime_UTR | 40.0% | |
| AAGTTAACTCCTGGAGCAAA+AGG | - | chr2_1:5400680-5400699 | Msa0189960:five_prime_UTR | 40.0% | |
| TGGAATGGAAAGAGAGAGTG+AGG | + | chr2_1:5398063-5398082 | None:intergenic | 45.0% | |
| CGTACTTTCTTTGCTTGCCA+TGG | - | chr2_1:5398246-5398265 | Msa0189960:CDS | 45.0% | |
| AGGAACAAATCAGCATGCGT+TGG | - | chr2_1:5399066-5399085 | Msa0189960:CDS | 45.0% | |
| ! | ACAAATCAGCATGCGTTGGT+TGG | - | chr2_1:5399070-5399089 | Msa0189960:CDS | 45.0% |
| !! | CAAATCAGCATGCGTTGGTT+GGG | - | chr2_1:5399071-5399090 | Msa0189960:CDS | 45.0% |
| TCTCTAGATCATCGTTCTCG+TGG | - | chr2_1:5399151-5399170 | Msa0189960:intron | 45.0% | |
| CTGACCTGACAATCTTGCAA+AGG | + | chr2_1:5399333-5399352 | None:intergenic | 45.0% | |
| ! | TGGCCGTCACTTTATTCCAA+AGG | - | chr2_1:5399795-5399814 | Msa0189960:intron | 45.0% |
| TAACCACACAAACTGGGATC+CGG | + | chr2_1:5399831-5399850 | None:intergenic | 45.0% | |
| TCCCAGTTTGTGTGGTTACT+CGG | - | chr2_1:5399833-5399852 | Msa0189960:intron | 45.0% | |
| ! | TCGGGAAAAGTGCATGTACT+AGG | + | chr2_1:5399870-5399889 | None:intergenic | 45.0% |
| ! | ACATGCACTTTTCCCGATGT+CGG | - | chr2_1:5399873-5399892 | Msa0189960:intron | 45.0% |
| TCTGATCAGTCAGCAAGCTT+GGG | + | chr2_1:5399929-5399948 | None:intergenic | 45.0% | |
| GATCAGACCAATGAAGAGCA+AGG | - | chr2_1:5399942-5399961 | Msa0189960:intron | 45.0% | |
| AAGGAACCCTTGCTCTTCAT+TGG | + | chr2_1:5399952-5399971 | None:intergenic | 45.0% | |
| !!! | GTTCTGTTTTGGGATCCTGA+AGG | + | chr2_1:5399971-5399990 | None:intergenic | 45.0% |
| TCTGAACAAGTGGGAAGACA+GGG | + | chr2_1:5400109-5400128 | None:intergenic | 45.0% | |
| AGAACAAATCGAGGACACAG+AGG | - | chr2_1:5400400-5400419 | Msa0189960:intron | 45.0% | |
| !! | AGGATACTGCTAGCTCTGAT+TGG | - | chr2_1:5400423-5400442 | Msa0189960:intron | 45.0% |
| ! | GCTGAATCGAAGCATTCTGA+TGG | - | chr2_1:5400554-5400573 | Msa0189960:intron | 45.0% |
| GTTTCATCGATGACTAGCAG+TGG | + | chr2_1:5400713-5400732 | None:intergenic | 45.0% | |
| ATATTTCACCCCAAGCATGC+CGG | + | chr2_1:5400768-5400787 | None:intergenic | 45.0% | |
| !! | TTAATATTAATTACAAAATT+AGG | - | chr2_1:5398291-5398310 | Msa0189960:CDS | 5.0% |
| !! | TATTAAAAAAAAACAAAAAT+TGG | + | chr2_1:5399383-5399402 | None:intergenic | 5.0% |
| ! | ACTGGGTTGAGACCCTGTTT+GGG | - | chr2_1:5398353-5398372 | Msa0189960:CDS | 50.0% |
| CACATAGGGCCTGTTTGGAT+TGG | + | chr2_1:5398607-5398626 | None:intergenic | 50.0% | |
| AAGCTCACATAGGGCCTGTT+TGG | + | chr2_1:5398612-5398631 | None:intergenic | 50.0% | |
| TACGTGACCGCATGCAATTG+TGG | - | chr2_1:5398794-5398813 | Msa0189960:CDS | 50.0% | |
| ACTGCAGCCACAATTGCATG+CGG | + | chr2_1:5398804-5398823 | None:intergenic | 50.0% | |
| CTGGAGATCTCAACGAACAC+AGG | - | chr2_1:5399046-5399065 | Msa0189960:CDS | 50.0% | |
| GCCGAGTAACCACACAAACT+GGG | + | chr2_1:5399837-5399856 | None:intergenic | 50.0% | |
| TGCCGAGTAACCACACAAAC+TGG | + | chr2_1:5399838-5399857 | None:intergenic | 50.0% | |
| ! | TCCTGGAAATGCACCGACAT+CGG | + | chr2_1:5399889-5399908 | None:intergenic | 50.0% |
| CTGATCAGTCAGCAAGCTTG+GGG | + | chr2_1:5399928-5399947 | None:intergenic | 50.0% | |
| GTCTGATCAGTCAGCAAGCT+TGG | + | chr2_1:5399930-5399949 | None:intergenic | 50.0% | |
| TGAAGAGCAAGGGTTCCTTC+AGG | - | chr2_1:5399953-5399972 | Msa0189960:intron | 50.0% | |
| CTCTGAACAAGTGGGAAGAC+AGG | + | chr2_1:5400110-5400129 | None:intergenic | 50.0% | |
| TTTGCCTGAAGAGTCAGAGC+AGG | - | chr2_1:5400226-5400245 | Msa0189960:intron | 50.0% | |
| TGATCCTGCTCTGACTCTTC+AGG | + | chr2_1:5400233-5400252 | None:intergenic | 50.0% | |
| AAGTACGGGCCATTCTCCAT+TGG | - | chr2_1:5400352-5400371 | Msa0189960:intron | 50.0% | |
| ACAAATCGAGGACACAGAGG+AGG | - | chr2_1:5400403-5400422 | Msa0189960:intron | 50.0% | |
| GAACTAGCACTGTCTACGAG+TGG | + | chr2_1:5400497-5400516 | None:intergenic | 50.0% | |
| ! | GGATGCTTTCCTTTTGCTCC+AGG | + | chr2_1:5400692-5400711 | None:intergenic | 50.0% |
| ! | GACTGGGTTGAGACCCTGTT+TGG | - | chr2_1:5398352-5398371 | Msa0189960:CDS | 55.0% |
| GGACGAGCAGCAAGTCAAAC+AGG | - | chr2_1:5399231-5399250 | Msa0189960:intron | 55.0% | |
| TGGTTAAGGCCCACGAGTCT+TGG | - | chr2_1:5399751-5399770 | Msa0189960:intron | 55.0% | |
| TAAAGTGACGGCCAAGCCAC+AGG | + | chr2_1:5399789-5399808 | None:intergenic | 55.0% | |
| ! | CCTGGAAATGCACCGACATC+GGG | + | chr2_1:5399888-5399907 | None:intergenic | 55.0% |
| GTAGCAGGAGCTGTGAATCC+TGG | + | chr2_1:5399906-5399925 | None:intergenic | 55.0% | |
| CTAGCACTGTCTACGAGTGG+TGG | + | chr2_1:5400494-5400513 | None:intergenic | 55.0% | |
| ATGTCCCAAACCGGCATGCT+TGG | - | chr2_1:5400755-5400774 | Msa0189960:intron | 55.0% | |
| TGTCCCAAACCGGCATGCTT+GGG | - | chr2_1:5400756-5400775 | Msa0189960:intron | 55.0% | |
| TGGGCAAGGCCAAGACTCGT+GGG | + | chr2_1:5399763-5399782 | None:intergenic | 60.0% | |
| ACAAACTGGGATCCGGCGTG+GGG | + | chr2_1:5399824-5399843 | None:intergenic | 60.0% | |
| CACAAACTGGGATCCGGCGT+GGG | + | chr2_1:5399825-5399844 | None:intergenic | 60.0% | |
| ACACAAACTGGGATCCGGCG+TGG | + | chr2_1:5399826-5399845 | None:intergenic | 60.0% | |
| ACGCCGGATCCCAGTTTGTG+TGG | - | chr2_1:5399825-5399844 | Msa0189960:intron | 60.0% | |
| CCCGATGTCGGTGCATTTCC+AGG | - | chr2_1:5399885-5399904 | Msa0189960:intron | 60.0% | |
| GTCAGCAAGCTTGGGGTAGC+AGG | + | chr2_1:5399921-5399940 | None:intergenic | 60.0% | |
| GTCCCAAACCGGCATGCTTG+GGG | - | chr2_1:5400757-5400776 | Msa0189960:intron | 60.0% | |
| !! | CACCCCAAGCATGCCGGTTT+GGG | + | chr2_1:5400762-5400781 | None:intergenic | 60.0% |
| ! | TCACCCCAAGCATGCCGGTT+TGG | + | chr2_1:5400763-5400782 | None:intergenic | 60.0% |
| TGCGCGTGCTTGTGCTTGCG+AGG | + | chr2_1:5398037-5398056 | None:intergenic | 65.0% | |
| GTGGGCAAGGCCAAGACTCG+TGG | + | chr2_1:5399764-5399783 | None:intergenic | 65.0% | |
| !! | TTGGCCTTGCCCACAGCCTG+TGG | - | chr2_1:5399770-5399789 | Msa0189960:intron | 65.0% |
| CAAGCCACAGGCTGTGGGCA+AGG | + | chr2_1:5399777-5399796 | None:intergenic | 65.0% | |
| CTTGCCCACAGCCTGTGGCT+TGG | - | chr2_1:5399775-5399794 | Msa0189960:intron | 65.0% | |
| ACGGCCAAGCCACAGGCTGT+GGG | + | chr2_1:5399782-5399801 | None:intergenic | 65.0% | |
| TTCCAAAGGCTCCCCCACGC+CGG | - | chr2_1:5399809-5399828 | Msa0189960:intron | 65.0% | |
| CAAACTGGGATCCGGCGTGG+GGG | + | chr2_1:5399823-5399842 | None:intergenic | 65.0% | |
| GACGGCCAAGCCACAGGCTG+TGG | + | chr2_1:5399783-5399802 | None:intergenic | 70.0% | |
| ATCCGGCGTGGGGGAGCCTT+TGG | + | chr2_1:5399814-5399833 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 5397943 | 5400790 | 5397943 | ID=Msa0189960;Name=Msa0189960 |
| chr2_1 | mRNA | 5397943 | 5400790 | 5397943 | ID=Msa0189960-mRNA-1;Parent=Msa0189960;Name=Msa0189960-mRNA-1;_AED=0.19;_eAED=0.25;_QI=338|0.66|0.75|1|0.33|0|4|0|429 |
| chr2_1 | exon | 5397943 | 5399106 | 5397943 | ID=Msa0189960-mRNA-1:exon:2467;Parent=Msa0189960-mRNA-1 |
| chr2_1 | exon | 5399386 | 5399719 | 5399386 | ID=Msa0189960-mRNA-1:exon:2466;Parent=Msa0189960-mRNA-1 |
| chr2_1 | exon | 5400643 | 5400744 | 5400643 | ID=Msa0189960-mRNA-1:exon:2465;Parent=Msa0189960-mRNA-1 |
| chr2_1 | exon | 5400766 | 5400790 | 5400766 | ID=Msa0189960-mRNA-1:exon:2464;Parent=Msa0189960-mRNA-1 |
| chr2_1 | five_prime_UTR | 5400766 | 5400790 | 5400766 | ID=Msa0189960-mRNA-1:five_prime_utr;Parent=Msa0189960-mRNA-1 |
| chr2_1 | five_prime_UTR | 5400643 | 5400744 | 5400643 | ID=Msa0189960-mRNA-1:five_prime_utr;Parent=Msa0189960-mRNA-1 |
| chr2_1 | five_prime_UTR | 5399509 | 5399719 | 5399509 | ID=Msa0189960-mRNA-1:five_prime_utr;Parent=Msa0189960-mRNA-1 |
| chr2_1 | CDS | 5399386 | 5399508 | 5399386 | ID=Msa0189960-mRNA-1:cds;Parent=Msa0189960-mRNA-1 |
| chr2_1 | CDS | 5397943 | 5399106 | 5397943 | ID=Msa0189960-mRNA-1:cds;Parent=Msa0189960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
