AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1123560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1123560 MtrunA17_Chr2g0279491 94.236 347 17 2 83 429 1 344 0.0 641
Msa1123560 MtrunA17_Chr5g0427141 31.765 340 183 14 127 426 47 377 7.29e-25 105
Msa1123560 MtrunA17_Chr2g0279501 90.909 44 4 0 1 44 1 44 4.84e-23 91.7
Msa1123560 MtrunA17_Chr5g0427151 68.182 44 14 0 1 44 1 44 1.07e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1123560 AT5G64340.1 37.037 243 115 9 183 417 97 309 1.61e-24 103
Msa1123560 AT5G09460.1 34.296 277 138 11 164 423 73 322 2.71e-24 103
Msa1123560 AT5G50010.1 29.044 272 143 13 152 417 75 302 1.21e-12 68.9

Find 106 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCAAACATGGTTCTGTTT+TGG 0.175141 7_3:+74473511 None:intergenic
GGACATAACTTAAGTGATTT+TGG 0.177489 7_3:-74474463 Msa1123560:five_prime_UTR
AACGCTTTGGTTCTTTGATA+TGG 0.214409 7_3:+74473811 None:intergenic
CCCGATGTCGGTGCATTTCC+AGG 0.219573 7_3:-74473605 Msa1123560:CDS
CGATTGATATATTGTTCTTT+AGG 0.235862 7_3:-74473785 Msa1123560:CDS
CACCCCAAGCATGCCGGTTT+GGG 0.281338 7_3:+74472731 None:intergenic
ATTCTCCATTGGCCGATAAA+AGG 0.283896 7_3:-74473127 Msa1123560:CDS
CAGCAAGTCAAACAGGATTT+CGG 0.294244 7_3:-74474252 Msa1123560:CDS
TGCCGAGTAACCACACAAAC+TGG 0.316885 7_3:+74473655 None:intergenic
GTGATCCTGCTCTGACTCTT+CGG 0.320147 7_3:+74473259 None:intergenic
TGGTGATAACCAATTGAAAA+AGG 0.339054 7_3:-74472865 Msa1123560:CDS
GAAAGACATGCAACTAATTT+CGG 0.351226 7_3:-74473311 Msa1123560:CDS
AAGGAACCCTTGCTCTTCAT+TGG 0.352750 7_3:+74473541 None:intergenic
AGCAAGTCAAACAGGATTTC+GGG 0.359421 7_3:-74474251 Msa1123560:CDS
GTCAGCAAGCTTGGGGTAGC+AGG 0.362679 7_3:+74473572 None:intergenic
TCTTTCTGGTTGGATGGTTA+AGG 0.369694 7_3:-74473753 Msa1123560:CDS
ATTATCTTCTTCAGTTTGTC+TGG 0.375885 7_3:+74472899 None:intergenic
TCACCCCAAGCATGCCGGTT+TGG 0.375945 7_3:+74472730 None:intergenic
ACGCTTTGGTTCTTTGATAT+GGG 0.376134 7_3:+74473812 None:intergenic
CGAGAATTCTCAATGTTTCA+CGG 0.378250 7_3:+74472835 None:intergenic
TTTGTCTGGCAAAATACATT+TGG 0.380415 7_3:+74472913 None:intergenic
TCTTCGGGCAAACTGCATTT+CGG 0.387029 7_3:+74473275 None:intergenic
TTTAGATTAACTGAGTAGTT+TGG 0.390250 7_3:-74474303 Msa1123560:five_prime_UTR
GACGGCCAAGCCACAGGCTG+TGG 0.391458 7_3:+74473710 None:intergenic
GTCTGATCAGTCAGCAAGCT+TGG 0.394597 7_3:+74473563 None:intergenic
TCAACCTTTGCAAGATTGTC+AGG 0.400374 7_3:-74474164 Msa1123560:intron
TGTCCCAAACCGGCATGCTT+GGG 0.402671 7_3:-74472734 Msa1123560:CDS
ATGTCCCAAACCGGCATGCT+TGG 0.403848 7_3:-74472735 Msa1123560:CDS
ATCACTCTAACAATTATTGT+TGG 0.407189 7_3:+74474196 None:intergenic
TGATCCTGCTCTGACTCTTC+GGG 0.408905 7_3:+74473260 None:intergenic
AAACATTGTAATGGCATTGA+AGG 0.416641 7_3:-74474223 Msa1123560:CDS
ATATCAATCGCTCAACGCTT+TGG 0.417429 7_3:+74473798 None:intergenic
TCTGATCAGTCAGCAAGCTT+GGG 0.421201 7_3:+74473564 None:intergenic
CTCTGAACAAGTGGGAAGAC+AGG 0.423360 7_3:+74473383 None:intergenic
TCAAGCTTATGATGTAAATC+AGG 0.424341 7_3:-74473333 Msa1123560:CDS
GGACGAGCAGCAAGTCAAAC+AGG 0.430378 7_3:-74474259 Msa1123560:CDS
CTTGCCCACAGCCTGTGGCT+TGG 0.438437 7_3:-74473715 Msa1123560:CDS
TCCCAGTTTGTGTGGTTACT+CGG 0.446760 7_3:-74473657 Msa1123560:CDS
CCTGGAAATGCACCGACATC+GGG 0.453130 7_3:+74473605 None:intergenic
CGGGCATTAAAACATTGTAA+TGG 0.458411 7_3:-74474232 Msa1123560:CDS
AAGTTAACTCCTGGAGCAAA+AGG 0.460584 7_3:-74472810 Msa1123560:CDS
CACAAACTGGGATCCGGCGT+GGG 0.461869 7_3:+74473668 None:intergenic
CAAATCAGCATGCGTTGGTT+GGG 0.463796 7_3:-74474419 Msa1123560:five_prime_UTR
TGAAGAGCAAGGGTTCCTTC+AGG 0.467207 7_3:-74473537 Msa1123560:CDS
ACAAATCAGCATGCGTTGGT+TGG 0.469250 7_3:-74474420 Msa1123560:five_prime_UTR
GTAGCAGGAGCTGTGAATCC+TGG 0.469952 7_3:+74473587 None:intergenic
TCTTGTTTCAGGAAAATTTG+TGG 0.470342 7_3:-74474487 None:intergenic
TTATGTGCTGCTTTCAAACA+TGG 0.478093 7_3:+74473500 None:intergenic
TTGGCCTTGCCCACAGCCTG+TGG 0.480119 7_3:-74473720 Msa1123560:CDS
AAATCTTTGATGTCCCAAAC+CGG 0.490129 7_3:-74472744 Msa1123560:CDS
TTGGTAAGAATCAAAAGTTA+TGG 0.490345 7_3:-74474284 Msa1123560:exon
AATTGTGTAGTAGTAACAAT+TGG 0.490535 7_3:+74473359 None:intergenic
TCGGGAAAAGTGCATGTACT+AGG 0.492334 7_3:+74473623 None:intergenic
AGGATACTGCTAGCTCTGAT+TGG 0.496152 7_3:-74473067 Msa1123560:CDS
GTGGGCAAGGCCAAGACTCG+TGG 0.499702 7_3:+74473729 None:intergenic
TGGTTAAGGCCCACGAGTCT+TGG 0.503846 7_3:-74473739 Msa1123560:CDS
TCCTGGAAATGCACCGACAT+CGG 0.507953 7_3:+74473604 None:intergenic
AGAAATTTATTATCTTTGAC+CGG 0.509368 7_3:-74473436 Msa1123560:CDS
TGGCCGTCACTTTATTCCAA+AGG 0.514084 7_3:-74473695 Msa1123560:CDS
CAAGCCACAGGCTGTGGGCA+AGG 0.517815 7_3:+74473716 None:intergenic
TAAAGTGACGGCCAAGCCAC+AGG 0.532373 7_3:+74473704 None:intergenic
ACAAACTGGGATCCGGCGTG+GGG 0.534438 7_3:+74473669 None:intergenic
TGATGATGAGGTAACAAGTA+CGG 0.535186 7_3:-74473153 Msa1123560:CDS
TAACCACACAAACTGGGATC+CGG 0.537805 7_3:+74473662 None:intergenic
GATGATGAGGTAACAAGTAC+GGG 0.539387 7_3:-74473152 Msa1123560:CDS
ACACAAACTGGGATCCGGCG+TGG 0.547985 7_3:+74473667 None:intergenic
ATTCTCGAGAAGTTAACTCC+TGG 0.553958 7_3:-74472819 Msa1123560:CDS
ACAATTGGACTCTGAACAAG+TGG 0.554080 7_3:+74473374 None:intergenic
ACCTTGTCTTATTATCAGAC+CGG 0.556624 7_3:+74473417 None:intergenic
CTCAGTTAATCTAAACGCAA+TGG 0.559259 7_3:+74474311 None:intergenic
AAGTACGGGCCATTCTCCAT+TGG 0.565316 7_3:-74473138 Msa1123560:CDS
AATTCAAGCGTACAACTTGG+CGG 0.565818 7_3:+74474378 None:intergenic
AAGCACAAGTTGATTGATGG+TGG 0.566047 7_3:-74473035 Msa1123560:CDS
TCTCTAGATCATCGTTCTCG+TGG 0.566678 7_3:-74474339 Msa1123560:five_prime_UTR
TGGGCAAGGCCAAGACTCGT+GGG 0.572098 7_3:+74473730 None:intergenic
ACGCCGGATCCCAGTTTGTG+TGG 0.581979 7_3:-74473665 Msa1123560:CDS
ACGGCCAAGCCACAGGCTGT+GGG 0.582071 7_3:+74473711 None:intergenic
CTGATCAGTCAGCAAGCTTG+GGG 0.586521 7_3:+74473565 None:intergenic
TAAGAATCAAAAGTTATGGT+AGG 0.587469 7_3:-74474280 Msa1123560:exon
TTTGCCCGAAGAGTCAGAGC+AGG 0.588239 7_3:-74473264 Msa1123560:CDS
GAAGATAATTCAGCAGCAGT+TGG 0.590809 7_3:-74472885 Msa1123560:CDS
TTGGAGATCTCAACGAACAC+AGG 0.593497 7_3:-74474444 Msa1123560:five_prime_UTR
GCCGAGTAACCACACAAACT+GGG 0.596870 7_3:+74473656 None:intergenic
GTCCCAAACCGGCATGCTTG+GGG 0.597778 7_3:-74472733 Msa1123560:CDS
TCTGAACAAGTGGGAAGACA+GGG 0.607368 7_3:+74473384 None:intergenic
ATATTTCACCCCAAGCATGC+CGG 0.607409 7_3:+74472725 None:intergenic
CTGACCTGACAATCTTGCAA+AGG 0.607594 7_3:+74474160 None:intergenic
GATCAGACCAATGAAGAGCA+AGG 0.613816 7_3:-74473548 Msa1123560:CDS
AGGAACAAATCAGCATGCGT+TGG 0.613837 7_3:-74474424 Msa1123560:five_prime_UTR
ATAAATTCAAGCGTACAACT+TGG 0.613947 7_3:+74474375 None:intergenic
CAAACTGGGATCCGGCGTGG+GGG 0.624572 7_3:+74473670 None:intergenic
ATCAGACCAATGAAGAGCAA+GGG 0.626049 7_3:-74473547 Msa1123560:CDS
TGTTTCAGGAAAATTTGTGG+AGG 0.628575 7_3:-74474484 None:intergenic
AGCACAAGTTGATTGATGGT+GGG 0.632895 7_3:-74473034 Msa1123560:CDS
CTAGCACTGTCTACGAGTGG+TGG 0.637309 7_3:+74472999 None:intergenic
GTTTCATCGATGACTAGCAG+TGG 0.639667 7_3:+74472780 None:intergenic
GAGCCTTTGGAATAAAGTGA+CGG 0.640143 7_3:+74473692 None:intergenic
TTTGATACAAGAACAAATCG+AGG 0.643181 7_3:-74473099 Msa1123560:CDS
TGACTCTGATGATGATGATG+AGG 0.659151 7_3:-74473165 Msa1123560:CDS
GCTGAATCGAAGCATTCTGA+TGG 0.665799 7_3:-74472936 Msa1123560:CDS
ACAAATCGAGGACACAGAGG+AGG 0.670161 7_3:-74473087 Msa1123560:CDS
GAAAGCAGCACATAATAACA+TGG 0.675231 7_3:-74473492 Msa1123560:CDS
ACCGGTCTGATAATAAGACA+AGG 0.684713 7_3:-74473418 Msa1123560:CDS
GAACTAGCACTGTCTACGAG+TGG 0.697232 7_3:+74472996 None:intergenic
CAATTGGACTCTGAACAAGT+GGG 0.729133 7_3:+74473375 None:intergenic
AGAACAAATCGAGGACACAG+AGG 0.739585 7_3:-74473090 Msa1123560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTCTTGACATGATTATTA+AGG - chr7_3:74473110-74473129 Msa1123560:CDS 20.0%
!! AGAAATTTATTATCTTTGAC+CGG - chr7_3:74473762-74473781 Msa1123560:CDS 20.0%
! TTTAGATTAACTGAGTAGTT+TGG - chr7_3:74472895-74472914 Msa1123560:CDS 25.0%
! TTGGTAAGAATCAAAAGTTA+TGG - chr7_3:74472914-74472933 Msa1123560:CDS 25.0%
! TAAGAATCAAAAGTTATGGT+AGG - chr7_3:74472918-74472937 Msa1123560:CDS 25.0%
! ATCACTCTAACAATTATTGT+TGG + chr7_3:74473005-74473024 None:intergenic 25.0%
!!! CATTCATTTTTTCTTAAAGC+TGG - chr7_3:74473303-74473322 Msa1123560:CDS 25.0%
! CGATTGATATATTGTTCTTT+AGG - chr7_3:74473413-74473432 Msa1123560:CDS 25.0%
!!! TTAGGATCTTTTTTTCTTTC+TGG - chr7_3:74473431-74473450 Msa1123560:CDS 25.0%
! AATTGTGTAGTAGTAACAAT+TGG + chr7_3:74473842-74473861 None:intergenic 25.0%
!! TATCAAACAAGTCCTTTTAT+CGG + chr7_3:74474086-74474105 None:intergenic 25.0%
!!! GGATTTTATCCTTTTTCAAT+TGG + chr7_3:74474345-74474364 None:intergenic 25.0%
! GGACATAACTTAAGTGATTT+TGG - chr7_3:74472735-74472754 Msa1123560:CDS 30.0%
ATAAATTCAAGCGTACAACT+TGG + chr7_3:74472826-74472845 None:intergenic 30.0%
! AAACATTGTAATGGCATTGA+AGG - chr7_3:74472975-74472994 Msa1123560:CDS 30.0%
! AGTAATGTGTTGCTAATTCT+TGG - chr7_3:74473059-74473078 Msa1123560:CDS 30.0%
!!! GATCTTTTTTTCTTTCTGGT+TGG - chr7_3:74473435-74473454 Msa1123560:CDS 30.0%
!!! TTTTTTTCTTTCTGGTTGGA+TGG - chr7_3:74473439-74473458 Msa1123560:CDS 30.0%
!! TTCAAACATGGTTCTGTTTT+GGG + chr7_3:74473689-74473708 None:intergenic 30.0%
!! TTTCAAACATGGTTCTGTTT+TGG + chr7_3:74473690-74473709 None:intergenic 30.0%
AATTTCTTCTGCAAAAATGC+AGG + chr7_3:74473749-74473768 None:intergenic 30.0%
TCAAGCTTATGATGTAAATC+AGG - chr7_3:74473865-74473884 Msa1123560:CDS 30.0%
GAAAGACATGCAACTAATTT+CGG - chr7_3:74473887-74473906 Msa1123560:intron 30.0%
TTTGATACAAGAACAAATCG+AGG - chr7_3:74474099-74474118 Msa1123560:intron 30.0%
!! ATCAACTTGTGCTTTTTGTT+TGG + chr7_3:74474157-74474176 None:intergenic 30.0%
!! AAAAAGCACAAGTTGATTGA+TGG - chr7_3:74474160-74474179 Msa1123560:intron 30.0%
TTTGTCTGGCAAAATACATT+TGG + chr7_3:74474288-74474307 None:intergenic 30.0%
ATTATCTTCTTCAGTTTGTC+TGG + chr7_3:74474302-74474321 None:intergenic 30.0%
TGGTGATAACCAATTGAAAA+AGG - chr7_3:74474333-74474352 Msa1123560:five_prime_UTR 30.0%
CTCAGTTAATCTAAACGCAA+TGG + chr7_3:74472890-74472909 None:intergenic 35.0%
CGGGCATTAAAACATTGTAA+TGG - chr7_3:74472966-74472985 Msa1123560:CDS 35.0%
TGATAGGCTTAAGCAATTGA+CGG + chr7_3:74473270-74473289 None:intergenic 35.0%
ATGCAGAACAGTTAAGTGAT+AGG + chr7_3:74473286-74473305 None:intergenic 35.0%
!! ACGCTTTGGTTCTTTGATAT+GGG + chr7_3:74473389-74473408 None:intergenic 35.0%
!! AACGCTTTGGTTCTTTGATA+TGG + chr7_3:74473390-74473409 None:intergenic 35.0%
!! TTATGTGCTGCTTTCAAACA+TGG + chr7_3:74473701-74473720 None:intergenic 35.0%
GAAAGCAGCACATAATAACA+TGG - chr7_3:74473706-74473725 Msa1123560:CDS 35.0%
! ACCTTGTCTTATTATCAGAC+CGG + chr7_3:74473784-74473803 None:intergenic 35.0%
! TGATGATGAGGTAACAAGTA+CGG - chr7_3:74474045-74474064 Msa1123560:intron 35.0%
CGAGAATTCTCAATGTTTCA+CGG + chr7_3:74474366-74474385 None:intergenic 35.0%
AAATCTTTGATGTCCCAAAC+CGG - chr7_3:74474454-74474473 Msa1123560:five_prime_UTR 35.0%
AATTCAAGCGTACAACTTGG+CGG + chr7_3:74472823-74472842 None:intergenic 40.0%
CAGCAAGTCAAACAGGATTT+CGG - chr7_3:74472946-74472965 Msa1123560:CDS 40.0%
AGCAAGTCAAACAGGATTTC+GGG - chr7_3:74472947-74472966 Msa1123560:CDS 40.0%
TCAACCTTTGCAAGATTGTC+AGG - chr7_3:74473034-74473053 Msa1123560:CDS 40.0%
GTTATCTTCGAACTCTTTGC+AGG - chr7_3:74473234-74473253 Msa1123560:CDS 40.0%
ATATCAATCGCTCAACGCTT+TGG + chr7_3:74473403-74473422 None:intergenic 40.0%
!! TCTTTCTGGTTGGATGGTTA+AGG - chr7_3:74473445-74473464 Msa1123560:CDS 40.0%
!! GAGCCTTTGGAATAAAGTGA+CGG + chr7_3:74473509-74473528 None:intergenic 40.0%
ATCAGACCAATGAAGAGCAA+GGG - chr7_3:74473651-74473670 Msa1123560:CDS 40.0%
ACCGGTCTGATAATAAGACA+AGG - chr7_3:74473780-74473799 Msa1123560:CDS 40.0%
CAATTGGACTCTGAACAAGT+GGG + chr7_3:74473826-74473845 None:intergenic 40.0%
ACAATTGGACTCTGAACAAG+TGG + chr7_3:74473827-74473846 None:intergenic 40.0%
! TGACTCTGATGATGATGATG+AGG - chr7_3:74474033-74474052 Msa1123560:intron 40.0%
GATGATGAGGTAACAAGTAC+GGG - chr7_3:74474046-74474065 Msa1123560:intron 40.0%
! TTTTATCGGCCAATGGAGAA+TGG + chr7_3:74474072-74474091 None:intergenic 40.0%
ATTCTCCATTGGCCGATAAA+AGG - chr7_3:74474071-74474090 Msa1123560:intron 40.0%
!! AAGCACAAGTTGATTGATGG+TGG - chr7_3:74474163-74474182 Msa1123560:intron 40.0%
!! AGCACAAGTTGATTGATGGT+GGG - chr7_3:74474164-74474183 Msa1123560:intron 40.0%
GAAGATAATTCAGCAGCAGT+TGG - chr7_3:74474313-74474332 Msa1123560:five_prime_UTR 40.0%
ATTCTCGAGAAGTTAACTCC+TGG - chr7_3:74474379-74474398 Msa1123560:five_prime_UTR 40.0%
AAGTTAACTCCTGGAGCAAA+AGG - chr7_3:74474388-74474407 Msa1123560:five_prime_UTR 40.0%
TTGGAGATCTCAACGAACAC+AGG - chr7_3:74472754-74472773 Msa1123560:CDS 45.0%
AGGAACAAATCAGCATGCGT+TGG - chr7_3:74472774-74472793 Msa1123560:CDS 45.0%
! ACAAATCAGCATGCGTTGGT+TGG - chr7_3:74472778-74472797 Msa1123560:CDS 45.0%
!! CAAATCAGCATGCGTTGGTT+GGG - chr7_3:74472779-74472798 Msa1123560:CDS 45.0%
TCTCTAGATCATCGTTCTCG+TGG - chr7_3:74472859-74472878 Msa1123560:CDS 45.0%
CTGACCTGACAATCTTGCAA+AGG + chr7_3:74473041-74473060 None:intergenic 45.0%
! TGGCCGTCACTTTATTCCAA+AGG - chr7_3:74473503-74473522 Msa1123560:CDS 45.0%
TAACCACACAAACTGGGATC+CGG + chr7_3:74473539-74473558 None:intergenic 45.0%
TCCCAGTTTGTGTGGTTACT+CGG - chr7_3:74473541-74473560 Msa1123560:CDS 45.0%
! TCGGGAAAAGTGCATGTACT+AGG + chr7_3:74473578-74473597 None:intergenic 45.0%
! ACATGCACTTTTCCCGATGT+CGG - chr7_3:74473581-74473600 Msa1123560:CDS 45.0%
TCTGATCAGTCAGCAAGCTT+GGG + chr7_3:74473637-74473656 None:intergenic 45.0%
GATCAGACCAATGAAGAGCA+AGG - chr7_3:74473650-74473669 Msa1123560:CDS 45.0%
AAGGAACCCTTGCTCTTCAT+TGG + chr7_3:74473660-74473679 None:intergenic 45.0%
!!! GTTCTGTTTTGGGATCCTGA+AGG + chr7_3:74473679-74473698 None:intergenic 45.0%
TCTGAACAAGTGGGAAGACA+GGG + chr7_3:74473817-74473836 None:intergenic 45.0%
TCTTCGGGCAAACTGCATTT+CGG + chr7_3:74473926-74473945 None:intergenic 45.0%
! CAAGTCCTTTTATCGGCCAA+TGG + chr7_3:74474079-74474098 None:intergenic 45.0%
AGAACAAATCGAGGACACAG+AGG - chr7_3:74474108-74474127 Msa1123560:intron 45.0%
!! AGGATACTGCTAGCTCTGAT+TGG - chr7_3:74474131-74474150 Msa1123560:intron 45.0%
! GCTGAATCGAAGCATTCTGA+TGG - chr7_3:74474262-74474281 Msa1123560:CDS 45.0%
GTTTCATCGATGACTAGCAG+TGG + chr7_3:74474421-74474440 None:intergenic 45.0%
ATATTTCACCCCAAGCATGC+CGG + chr7_3:74474476-74474495 None:intergenic 45.0%
!! TATTAAAAAAAAACAAAAAT+TGG + chr7_3:74473091-74473110 None:intergenic 5.0%
GCCGAGTAACCACACAAACT+GGG + chr7_3:74473545-74473564 None:intergenic 50.0%
TGCCGAGTAACCACACAAAC+TGG + chr7_3:74473546-74473565 None:intergenic 50.0%
! TCCTGGAAATGCACCGACAT+CGG + chr7_3:74473597-74473616 None:intergenic 50.0%
CTGATCAGTCAGCAAGCTTG+GGG + chr7_3:74473636-74473655 None:intergenic 50.0%
GTCTGATCAGTCAGCAAGCT+TGG + chr7_3:74473638-74473657 None:intergenic 50.0%
TGAAGAGCAAGGGTTCCTTC+AGG - chr7_3:74473661-74473680 Msa1123560:CDS 50.0%
CTCTGAACAAGTGGGAAGAC+AGG + chr7_3:74473818-74473837 None:intergenic 50.0%
TGATCCTGCTCTGACTCTTC+GGG + chr7_3:74473941-74473960 None:intergenic 50.0%
GTGATCCTGCTCTGACTCTT+CGG + chr7_3:74473942-74473961 None:intergenic 50.0%
AAGTACGGGCCATTCTCCAT+TGG - chr7_3:74474060-74474079 Msa1123560:intron 50.0%
ACAAATCGAGGACACAGAGG+AGG - chr7_3:74474111-74474130 Msa1123560:intron 50.0%
GAACTAGCACTGTCTACGAG+TGG + chr7_3:74474205-74474224 None:intergenic 50.0%
! GGATGCTTTCCTTTTGCTCC+AGG + chr7_3:74474400-74474419 None:intergenic 50.0%
GGACGAGCAGCAAGTCAAAC+AGG - chr7_3:74472939-74472958 Msa1123560:CDS 55.0%
TGGTTAAGGCCCACGAGTCT+TGG - chr7_3:74473459-74473478 Msa1123560:CDS 55.0%
TAAAGTGACGGCCAAGCCAC+AGG + chr7_3:74473497-74473516 None:intergenic 55.0%
! CCTGGAAATGCACCGACATC+GGG + chr7_3:74473596-74473615 None:intergenic 55.0%
GTAGCAGGAGCTGTGAATCC+TGG + chr7_3:74473614-74473633 None:intergenic 55.0%
TTTGCCCGAAGAGTCAGAGC+AGG - chr7_3:74473934-74473953 Msa1123560:intron 55.0%
CTAGCACTGTCTACGAGTGG+TGG + chr7_3:74474202-74474221 None:intergenic 55.0%
ATGTCCCAAACCGGCATGCT+TGG - chr7_3:74474463-74474482 Msa1123560:five_prime_UTR 55.0%
TGTCCCAAACCGGCATGCTT+GGG - chr7_3:74474464-74474483 Msa1123560:five_prime_UTR 55.0%
TGGGCAAGGCCAAGACTCGT+GGG + chr7_3:74473471-74473490 None:intergenic 60.0%
ACAAACTGGGATCCGGCGTG+GGG + chr7_3:74473532-74473551 None:intergenic 60.0%
CACAAACTGGGATCCGGCGT+GGG + chr7_3:74473533-74473552 None:intergenic 60.0%
ACACAAACTGGGATCCGGCG+TGG + chr7_3:74473534-74473553 None:intergenic 60.0%
ACGCCGGATCCCAGTTTGTG+TGG - chr7_3:74473533-74473552 Msa1123560:CDS 60.0%
CCCGATGTCGGTGCATTTCC+AGG - chr7_3:74473593-74473612 Msa1123560:CDS 60.0%
GTCAGCAAGCTTGGGGTAGC+AGG + chr7_3:74473629-74473648 None:intergenic 60.0%
GTCCCAAACCGGCATGCTTG+GGG - chr7_3:74474465-74474484 Msa1123560:five_prime_UTR 60.0%
!! CACCCCAAGCATGCCGGTTT+GGG + chr7_3:74474470-74474489 None:intergenic 60.0%
! TCACCCCAAGCATGCCGGTT+TGG + chr7_3:74474471-74474490 None:intergenic 60.0%
GTGGGCAAGGCCAAGACTCG+TGG + chr7_3:74473472-74473491 None:intergenic 65.0%
!! TTGGCCTTGCCCACAGCCTG+TGG - chr7_3:74473478-74473497 Msa1123560:CDS 65.0%
CAAGCCACAGGCTGTGGGCA+AGG + chr7_3:74473485-74473504 None:intergenic 65.0%
CTTGCCCACAGCCTGTGGCT+TGG - chr7_3:74473483-74473502 Msa1123560:CDS 65.0%
ACGGCCAAGCCACAGGCTGT+GGG + chr7_3:74473490-74473509 None:intergenic 65.0%
TTCCAAAGGCTCCCCCACGC+CGG - chr7_3:74473517-74473536 Msa1123560:CDS 65.0%
CAAACTGGGATCCGGCGTGG+GGG + chr7_3:74473531-74473550 None:intergenic 65.0%
GACGGCCAAGCCACAGGCTG+TGG + chr7_3:74473491-74473510 None:intergenic 70.0%
ATCCGGCGTGGGGGAGCCTT+TGG + chr7_3:74473522-74473541 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 74472722 74474498 74472722 ID=Msa1123560;Name=Msa1123560
chr7_3 mRNA 74472722 74474498 74472722 ID=Msa1123560-mRNA-1;Parent=Msa1123560;Name=Msa1123560-mRNA-1;_AED=0.20;_eAED=0.26;_QI=211|0|0.5|1|1|0.5|2|0|429
chr7_3 exon 74472722 74473885 74472722 ID=Msa1123560-mRNA-1:exon:19809;Parent=Msa1123560-mRNA-1
chr7_3 exon 74474165 74474498 74474165 ID=Msa1123560-mRNA-1:exon:19808;Parent=Msa1123560-mRNA-1
chr7_3 five_prime_UTR 74474288 74474498 74474288 ID=Msa1123560-mRNA-1:five_prime_utr;Parent=Msa1123560-mRNA-1
chr7_3 CDS 74474165 74474287 74474165 ID=Msa1123560-mRNA-1:cds;Parent=Msa1123560-mRNA-1
chr7_3 CDS 74472722 74473885 74472722 ID=Msa1123560-mRNA-1:cds;Parent=Msa1123560-mRNA-1
Gene Sequence

>Msa1123560

ATGGTAGGACGAGCAGCAAGTCAAACAGGATTTCGGGCATTAAAACATTGTAATGGCATTGAAGGTGAACCAACAATAATTGTTAGAGTGATTGCATGCTTTCAACCTTTGCAAGATTGTCAGTTTTCTTTTTCTGTCATTTGTTACGAAGAGAAGAAGCAAGTTATTGAAGATCCCATATCAAAGAACCAAAGCGTTGAGCGATTGATATATTGTTCTTTAGGATCTTTTTTTCTTTCTGGTTGGATGGTTAAGGCCCACGAGTCTTGGCCTTGCCCACAGCCTGTGGCTTGGCCGTCACTTTATTCCAAAGGCTCCCCCACGCCGGATCCCAGTTTGTGTGGTTACTCGGCATATCTGACTCCTAGTACATGCACTTTTCCCGATGTCGGTGCATTTCCAGGATTCACAGCTCCTGCTACCCCAAGCTTGCTGACTGATCAGACCAATGAAGAGCAAGGGTTCCTTCAGGATCCCAAAACAGAACCATGTTTGAAAGCAGCACATAATAACATGGCTATGCAAAATGCGAATCCTGCATTTTTGCAGAAGAAATTTATTATCTTTGACCGGTCTGATAATAAGACAAGGTTGTTTTATAGCCCTGTCTTCCCACTTGTTCAGAGTCCAATTGTTACTACTACACAATTCGCTCAAGCTTATGATGTAAATCAGGAAAGACATGCAACTAATTTCGGTCAAAAACATTTACCGAAATGCAGTTTGCCCGAAGAGTCAGAGCAGGATCACGTTGTTAACGAAGAAAGTGAAATGCATGAAGACACAGAAGAAATCAATGCATTGCTAAGTTCTGATGATTATGACTCTGATGATGATGATGAGGTAACAAGTACGGGCCATTCTCCATTGGCCGATAAAAGGACTTGTTTGATACAAGAACAAATCGAGGACACAGAGGAGGATACTGCTAGCTCTGATTGGCCAAACAAAAAGCACAAGTTGATTGATGGTGGGTACACAAAATTACCACCACTCGTAGACAGTGCTAGTTCAGTAAGACTAAATGAACTGTGTGAATGTGTCAGTGATGCTGAATCGAAGCATTCTGATGGCCAAATGTATTTTGCCAGACAAACTGAAGAAGATAATTCAGCAGCAGTTGGTGATAACCAATTGAAAAAGGATAAAATCCGTGAAACATTGAGAATTCTCGAGAAGTTAACTCCTGGAGCAAAAGGAAAGCATCCACTGCTAGTCATCGATGAAACTATCGATTACTTAAAATCTTTGATGTCCCAAACCGGCATGCTTGGGGTGAAATATCAC
Protein sequence

>Msa1123560

MVGRAASQTGFRALKHCNGIEGEPTIIVRVIACFQPLQDCQFSFSVICYEEKKQVIEDPISKNQSVERLIYCSLGSFFLSGWMVKAHESWPCPQPVAWPSLYSKGSPTPDPSLCGYSAYLTPSTCTFPDVGAFPGFTAPATPSLLTDQTNEEQGFLQDPKTEPCLKAAHNNMAMQNANPAFLQKKFIIFDRSDNKTRLFYSPVFPLVQSPIVTTTQFAQAYDVNQERHATNFGQKHLPKCSLPEESEQDHVVNEESEMHEDTEEINALLSSDDYDSDDDDEVTSTGHSPLADKRTCLIQEQIEDTEEDTASSDWPNKKHKLIDGGYTKLPPLVDSASSVRLNELCECVSDAESKHSDGQMYFARQTEEDNSAAVGDNQLKKDKIRETLRILEKLTPGAKGKHPLLVIDETIDYLKSLMSQTGMLGVKYH