AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0881710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0881710 MtrunA17_Chr6g0474671 79.352 247 26 4 1 230 1 239 2.93e-135 379
Msa0881710 MtrunA17_Chr1g0204351 50.204 245 99 7 5 229 1 242 3.57e-64 199
Msa0881710 MtrunA17_Chr1g0204361 39.216 153 82 3 65 207 19 170 1.27e-31 114
Msa0881710 MtrunA17_Chr6g0474681 38.764 178 96 4 62 230 3 176 7.54e-31 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0881710 AT4G25400.1 39.766 171 93 4 59 223 19 185 2.50e-33 119
Msa0881710 AT4G25410.1 38.554 166 89 3 69 221 47 212 1.82e-32 117
Msa0881710 AT5G51780.2 40.000 175 90 4 61 221 21 194 3.15e-31 114
Msa0881710 AT5G51780.1 40.116 172 88 4 64 221 1 171 3.21e-31 113
Msa0881710 AT5G51790.1 38.824 170 89 2 65 221 27 194 1.09e-30 112
Msa0881710 AT4G25400.2 42.484 153 78 4 59 205 19 167 1.52e-30 112
Msa0881710 AT5G51790.3 38.824 170 89 2 65 221 92 259 3.91e-30 113
Msa0881710 AT5G51790.4 40.260 154 77 2 65 205 27 178 5.18e-28 105
Msa0881710 AT5G51790.2 40.260 154 77 2 65 205 92 243 1.91e-27 105
Msa0881710 AT1G62975.1 28.700 223 130 4 28 223 39 259 1.49e-21 90.1
Msa0881710 AT1G62975.2 48.235 85 42 1 52 136 63 145 6.21e-20 85.5
Msa0881710 AT1G12540.1 32.105 190 111 4 50 223 62 249 7.79e-19 82.8

Find 34 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGAGTTACTAAAATTAT+TGG 0.157017 6_1:+29706922 Msa0881710:CDS
TCATAAAGTAGTTCATTATT+TGG 0.217906 6_1:-29705762 None:intergenic
TTAAATGTTCACCAGAATAA+TGG 0.283582 6_1:+29706848 Msa0881710:intron
ACTAAAATTATTGGCTAAAG+AGG 0.322448 6_1:+29706931 Msa0881710:CDS
GGATCGGAGAGATGCATAAT+AGG 0.379636 6_1:-29705874 None:intergenic
TGTGGGGACTATTAGAAAAC+TGG 0.390874 6_1:-29705641 None:intergenic
ATAGAGAGATTGAGAAGAAA+AGG 0.391251 6_1:+29705835 Msa0881710:CDS
AGTCAATCACATGTGATTGT+AGG 0.431382 6_1:-29708902 None:intergenic
CAAAATAATATCAATAAACT+TGG 0.435192 6_1:+29706749 Msa0881710:CDS
TAACTAGTTCATTGCTGCCT+TGG 0.465128 6_1:-29705617 None:intergenic
TCATTGCTGCCTTGGTGTAA+AGG 0.472102 6_1:-29705609 None:intergenic
CTCAAATTGATCTACAATGT+TGG 0.473658 6_1:-29708852 None:intergenic
AAATAATGAACTACTTTATG+AGG 0.483202 6_1:+29705764 Msa0881710:CDS
TATTATCAAGAATCAGATCA+TGG 0.493803 6_1:-29705683 None:intergenic
AAAACTCGCCAATTCTAAGC+TGG 0.500520 6_1:+29706793 Msa0881710:CDS
GAAGAAAAGGAGGCAAGAAA+TGG 0.503359 6_1:+29705848 Msa0881710:CDS
ATTTACAAGTGGCTTAAAAG+AGG 0.506030 6_1:+29706886 Msa0881710:CDS
ATACCTCACACATGACACTT+TGG 0.523655 6_1:-29707003 None:intergenic
GCTTCCTCTTGAGTTCATCA+AGG 0.524427 6_1:+29705899 Msa0881710:CDS
TTGAGAATTGAATTTACAAG+TGG 0.546189 6_1:+29706875 Msa0881710:CDS
CTAAAATTATTGGCTAAAGA+GGG 0.551865 6_1:+29706932 Msa0881710:CDS
CAAGTGGCTTAAAAGAGGAA+AGG 0.561553 6_1:+29706891 Msa0881710:CDS
TGCGTTACAACAGAAATCAA+TGG 0.564243 6_1:+29706971 Msa0881710:CDS
ATAATTCTAATGAACAAATG+AGG 0.576628 6_1:+29705802 Msa0881710:CDS
CATTTAAATTGCATGATGCA+TGG 0.579018 6_1:-29706832 None:intergenic
AATATCTGATCATACGAATG+AGG 0.579968 6_1:+29706703 Msa0881710:CDS
ATTATCAAGAATCAGATCAT+GGG 0.584403 6_1:-29705682 None:intergenic
CTAACCTTGATGAACTCAAG+AGG 0.593616 6_1:-29705903 None:intergenic
GATGAACTCAAGAGGAAGCA+AGG 0.597305 6_1:-29705895 None:intergenic
GAGAGATTGAGAAGAAAAGG+AGG 0.599248 6_1:+29705838 Msa0881710:CDS
ACTCAAGAGGAAGCAAGGAT+CGG 0.611742 6_1:-29705890 None:intergenic
GCCTTGGTGTAAAGGAAACA+TGG 0.615909 6_1:-29705601 None:intergenic
ACCATGTTTCCTTTACACCA+AGG 0.675993 6_1:+29705600 Msa0881710:CDS
GCTCCAAAGTGTCATGTGTG+AGG 0.704417 6_1:+29707000 Msa0881710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTCTTTTGAAATTAAT+TGG + chr6_1:29705963-29705982 Msa0881710:intron 10.0%
!!! TTTTAATTGGAATTTTTATA+AGG - chr6_1:29706019-29706038 None:intergenic 10.0%
!! ATCAATACATATATATAAAT+AGG + chr6_1:29706047-29706066 Msa0881710:intron 10.0%
!! TAATATTATGAAATACAAAA+AGG + chr6_1:29708541-29708560 Msa0881710:intron 10.0%
!!! TTGATTTATCATCTTTTAAT+TGG - chr6_1:29706032-29706051 None:intergenic 15.0%
!! AGCAAAAAGAAAATTAAAAT+TGG - chr6_1:29706403-29706422 None:intergenic 15.0%
!!! CTTTTTTTCATATACAAATT+TGG + chr6_1:29706465-29706484 Msa0881710:intron 15.0%
!!! TTTAGTTTATTTAAATTCGT+CGG + chr6_1:29706568-29706587 Msa0881710:intron 15.0%
!! CAAATTATTTCAAAAAAATC+TGG - chr6_1:29706656-29706675 None:intergenic 15.0%
!!! AATTTGCTTAAAATATTTAC+AGG + chr6_1:29706670-29706689 Msa0881710:intron 15.0%
!! ATTTGCTTAAAATATTTACA+GGG + chr6_1:29706671-29706690 Msa0881710:intron 15.0%
!! CAAAATAATATCAATAAACT+TGG + chr6_1:29706749-29706768 Msa0881710:CDS 15.0%
!! AAATGTAACTATAATTATTG+TGG + chr6_1:29707493-29707512 Msa0881710:intron 15.0%
!!! CAAAGAAAAATGTTTTTTAA+AGG + chr6_1:29707781-29707800 Msa0881710:intron 15.0%
!! AGAATAAAATTAGGTTTAAA+GGG - chr6_1:29708423-29708442 None:intergenic 15.0%
!! AAGAATAAAATTAGGTTTAA+AGG - chr6_1:29708424-29708443 None:intergenic 15.0%
!!! TAAGTAAACTTACTAAATTT+TGG - chr6_1:29708519-29708538 None:intergenic 15.0%
!!! ATTAGAATAAATTTTATCCA+TGG - chr6_1:29708797-29708816 None:intergenic 15.0%
!! TCATAAAGTAGTTCATTATT+TGG - chr6_1:29705765-29705784 None:intergenic 20.0%
!! AAATAATGAACTACTTTATG+AGG + chr6_1:29705764-29705783 Msa0881710:CDS 20.0%
!! ATAATTCTAATGAACAAATG+AGG + chr6_1:29705802-29705821 Msa0881710:CDS 20.0%
!! TTTATATCACTTATTTCATC+CGG + chr6_1:29706442-29706461 Msa0881710:intron 20.0%
!! ATTTGTATATGAAAAAAAGC+CGG - chr6_1:29706464-29706483 None:intergenic 20.0%
!!! ATATACAAATTTGGTTCAAT+CGG + chr6_1:29706474-29706493 Msa0881710:intron 20.0%
!! TAGTTAATATGAACGTTATT+TGG - chr6_1:29706620-29706639 None:intergenic 20.0%
!! TTCAGAGTTACTAAAATTAT+TGG + chr6_1:29706922-29706941 Msa0881710:CDS 20.0%
!! GTACTTATATTATGTGATAT+AGG + chr6_1:29707465-29707484 Msa0881710:intron 20.0%
!!! TTATTGGTTTAAATCATTGT+TGG + chr6_1:29707597-29707616 Msa0881710:intron 20.0%
!! ATCATTGATGTAATATATGT+TGG - chr6_1:29707822-29707841 None:intergenic 20.0%
!! AATAAAATATTAAAACACCC+AGG - chr6_1:29708223-29708242 None:intergenic 20.0%
!!! TTATTTTTTTGAATGTCTGA+AGG + chr6_1:29708238-29708257 Msa0881710:intron 20.0%
!!! TATTTTTTTGAATGTCTGAA+GGG + chr6_1:29708239-29708258 Msa0881710:intron 20.0%
!!! GGTATTTTTTATCATGTTAT+TGG + chr6_1:29708260-29708279 Msa0881710:intron 20.0%
!! GAATAAAATTAGGTTTAAAG+GGG - chr6_1:29708422-29708441 None:intergenic 20.0%
!! GGAAGTTAAAGAATAAAATT+AGG - chr6_1:29708432-29708451 None:intergenic 20.0%
! ATTATCAAGAATCAGATCAT+GGG - chr6_1:29705685-29705704 None:intergenic 25.0%
! TATTATCAAGAATCAGATCA+TGG - chr6_1:29705686-29705705 None:intergenic 25.0%
!! GGAATTTTTATAAGGAGATT+AGG - chr6_1:29706011-29706030 None:intergenic 25.0%
!! CTTCTCTCTAATATATTTTG+TGG + chr6_1:29706145-29706164 Msa0881710:intron 25.0%
! TTTAATCGGATAAAATCAAC+CGG - chr6_1:29706514-29706533 None:intergenic 25.0%
!! TACCAGTTAATTGGTTTAAT+CGG - chr6_1:29706528-29706547 None:intergenic 25.0%
! TGAACGTTATTTGGATTAAT+CGG - chr6_1:29706611-29706630 None:intergenic 25.0%
!! ATTATTTTCCAGCTTAGAAT+TGG - chr6_1:29706804-29706823 None:intergenic 25.0%
! TTAAATGTTCACCAGAATAA+TGG + chr6_1:29706848-29706867 Msa0881710:intron 25.0%
! TTCTCAAAATTCCATTATTC+TGG - chr6_1:29706862-29706881 None:intergenic 25.0%
! TTGAGAATTGAATTTACAAG+TGG + chr6_1:29706875-29706894 Msa0881710:CDS 25.0%
!! ACTAAAATTATTGGCTAAAG+AGG + chr6_1:29706931-29706950 Msa0881710:CDS 25.0%
!! CTAAAATTATTGGCTAAAGA+GGG + chr6_1:29706932-29706951 Msa0881710:CDS 25.0%
! AAACATTGTAGCAAAATTCA+TGG + chr6_1:29707046-29707065 Msa0881710:intron 25.0%
! TGTGTTTACATTGTCAAAAT+CGG + chr6_1:29707078-29707097 Msa0881710:intron 25.0%
! TATGATCGAACGAAATAAAA+TGG + chr6_1:29707190-29707209 Msa0881710:intron 25.0%
!!! CTATTGATTTAGATCAAAGA+GGG + chr6_1:29707377-29707396 Msa0881710:intron 25.0%
! TCTAATACTCATTCTCTTAT+TGG + chr6_1:29707581-29707600 Msa0881710:intron 25.0%
! AAAATTGAACATACACAAAG+TGG + chr6_1:29707631-29707650 Msa0881710:intron 25.0%
! TTTAGTACTCACTCATTTAT+TGG - chr6_1:29707678-29707697 None:intergenic 25.0%
! CTTTATGTACTTCTTTCATA+AGG + chr6_1:29707741-29707760 Msa0881710:intron 25.0%
!!! TGTTTTTTAAAGGAGAGTTA+AGG + chr6_1:29707791-29707810 Msa0881710:intron 25.0%
!!! AATAAGTTGATTGCATTCAT+TGG - chr6_1:29707964-29707983 None:intergenic 25.0%
! ATGAATGCAATCAACTTATT+AGG + chr6_1:29707964-29707983 Msa0881710:intron 25.0%
! TGAATGCAATCAACTTATTA+GGG + chr6_1:29707965-29707984 Msa0881710:intron 25.0%
!! TAGCAATTACTTGATCATTT+TGG - chr6_1:29708453-29708472 None:intergenic 25.0%
! AGTAATTGCTATCCAAATTA+AGG + chr6_1:29708462-29708481 Msa0881710:intron 25.0%
!!! TAAATTTTGGTTAAGAGGAA+GGG - chr6_1:29708506-29708525 None:intergenic 25.0%
!!! CTTACTAAATTTTGGTTAAG+AGG - chr6_1:29708511-29708530 None:intergenic 25.0%
! AGGTCTATTAAATTCTTCTA+AGG + chr6_1:29708561-29708580 Msa0881710:intron 25.0%
! GGTCTATTAAATTCTTCTAA+GGG + chr6_1:29708562-29708581 Msa0881710:intron 25.0%
!! ATATGCTTGATTTTACACAT+AGG + chr6_1:29708635-29708654 Msa0881710:intron 25.0%
ATAGAGAGATTGAGAAGAAA+AGG + chr6_1:29705835-29705854 Msa0881710:CDS 30.0%
CAAATCATACATATCTCATC+TGG - chr6_1:29706095-29706114 None:intergenic 30.0%
! AGAGTTGCTTTCTATTCATT+TGG - chr6_1:29706309-29706328 None:intergenic 30.0%
ATCCGATTAAACCAATTAAC+TGG + chr6_1:29706523-29706542 Msa0881710:intron 30.0%
AATATCTGATCATACGAATG+AGG + chr6_1:29706703-29706722 Msa0881710:CDS 30.0%
!!! TTTTTTGAGTTCATCTCTCT+TGG - chr6_1:29706777-29706796 None:intergenic 30.0%
CATTTAAATTGCATGATGCA+TGG - chr6_1:29706835-29706854 None:intergenic 30.0%
ATTTACAAGTGGCTTAAAAG+AGG + chr6_1:29706886-29706905 Msa0881710:CDS 30.0%
GTGTTTACATTGTCAAAATC+GGG + chr6_1:29707079-29707098 Msa0881710:intron 30.0%
TAAAATCGCAATCGAAATCA+AGG + chr6_1:29707144-29707163 Msa0881710:intron 30.0%
AATGGAAATGATTGAAATCG+AGG + chr6_1:29707249-29707268 Msa0881710:intron 30.0%
! GGTTTTTACACGATTTTGAA+GGG - chr6_1:29707308-29707327 None:intergenic 30.0%
! AGGTTTTTACACGATTTTGA+AGG - chr6_1:29707309-29707328 None:intergenic 30.0%
TCGAAAAACATGCAAAATCA+TGG - chr6_1:29707352-29707371 None:intergenic 30.0%
!! GCTATTGATTTAGATCAAAG+AGG + chr6_1:29707376-29707395 Msa0881710:intron 30.0%
TAACATTACTCAAGTCACAA+AGG - chr6_1:29707536-29707555 None:intergenic 30.0%
AAGAGAATGAGTATTAGAGA+GGG - chr6_1:29707579-29707598 None:intergenic 30.0%
TAAGAGAATGAGTATTAGAG+AGG - chr6_1:29707580-29707599 None:intergenic 30.0%
! GATTAGATTCCTAACCTTTT+GGG - chr6_1:29707865-29707884 None:intergenic 30.0%
! AGATTAGATTCCTAACCTTT+TGG - chr6_1:29707866-29707885 None:intergenic 30.0%
GAATGCAATCAACTTATTAG+GGG + chr6_1:29707966-29707985 Msa0881710:intron 30.0%
AAAATATTAAAACACCCAGG+AGG - chr6_1:29708220-29708239 None:intergenic 30.0%
! GATTAGTCACTACTAAAATG+TGG - chr6_1:29708299-29708318 None:intergenic 30.0%
! ATATCCAACATGTTGTTTGA+CGG - chr6_1:29708323-29708342 None:intergenic 30.0%
AACAACATGTTGGATATGTA+AGG + chr6_1:29708326-29708345 Msa0881710:intron 30.0%
!!! CTAAATTTTGGTTAAGAGGA+AGG - chr6_1:29708507-29708526 None:intergenic 30.0%
ACATTACATTTCATGAGTCA+TGG + chr6_1:29708693-29708712 Msa0881710:intron 30.0%
! TGTTAAGCAATCTAAAACCA+TGG + chr6_1:29708777-29708796 Msa0881710:intron 30.0%
CTCAAATTGATCTACAATGT+TGG - chr6_1:29708855-29708874 None:intergenic 30.0%
!! ATTTTGTGTTGGTGTTTGTG+GGG - chr6_1:29705660-29705679 None:intergenic 35.0%
!! GATTTTGTGTTGGTGTTTGT+GGG - chr6_1:29705661-29705680 None:intergenic 35.0%
!! AGATTTTGTGTTGGTGTTTG+TGG - chr6_1:29705662-29705681 None:intergenic 35.0%
TGGTACCTACTTCACTATAT+AGG + chr6_1:29705983-29706002 Msa0881710:intron 35.0%
AGGATCCTATATAGTGAAGT+AGG - chr6_1:29705991-29706010 None:intergenic 35.0%
!!! ATCGGAAACTGTTACTTTTC+CGG + chr6_1:29706492-29706511 Msa0881710:intron 35.0%
AATTAACTGGTACGTTCGTT+CGG + chr6_1:29706536-29706555 Msa0881710:intron 35.0%
TGCGTTACAACAGAAATCAA+TGG + chr6_1:29706971-29706990 Msa0881710:CDS 35.0%
AAGATGTCGATGACATATGA+TGG + chr6_1:29707220-29707239 Msa0881710:intron 35.0%
! GACATATGATGGTAACGAAA+TGG + chr6_1:29707231-29707250 Msa0881710:intron 35.0%
!! TACACGATTTTGAAGGGTTT+CGG - chr6_1:29707302-29707321 None:intergenic 35.0%
!! GATCTCGATTTTGACAACAA+TGG + chr6_1:29707424-29707443 Msa0881710:intron 35.0%
ATTGAACATACACAAAGTGG+TGG + chr6_1:29707634-29707653 Msa0881710:intron 35.0%
TTGAACATACACAAAGTGGT+GGG + chr6_1:29707635-29707654 Msa0881710:intron 35.0%
AAGTACATAAAGTCAAGTCG+AGG - chr6_1:29707733-29707752 None:intergenic 35.0%
! TGATTTGCAAAGATCCCAAA+AGG + chr6_1:29707848-29707867 Msa0881710:intron 35.0%
GTTGATTGCATTCATTGGTA+GGG - chr6_1:29707959-29707978 None:intergenic 35.0%
AGTTGATTGCATTCATTGGT+AGG - chr6_1:29707960-29707979 None:intergenic 35.0%
TAGTCACTACTAAAATGTGG+CGG - chr6_1:29708296-29708315 None:intergenic 35.0%
AACATGTTGGATATGTAAGG+TGG + chr6_1:29708329-29708348 Msa0881710:intron 35.0%
ACATGTTGGATATGTAAGGT+GGG + chr6_1:29708330-29708349 Msa0881710:intron 35.0%
TCCAGAAAATATGGTTGGAT+GGG - chr6_1:29708361-29708380 None:intergenic 35.0%
ATCCAGAAAATATGGTTGGA+TGG - chr6_1:29708362-29708381 None:intergenic 35.0%
! TCCAACCATATTTTCTGGAT+AGG + chr6_1:29708362-29708381 Msa0881710:intron 35.0%
TGTTGCCTATCCAGAAAATA+TGG - chr6_1:29708370-29708389 None:intergenic 35.0%
AACCAGAGTTTATGGAATGA+GGG - chr6_1:29708607-29708626 None:intergenic 35.0%
TAACCAGAGTTTATGGAATG+AGG - chr6_1:29708608-29708627 None:intergenic 35.0%
GCATGTATAACCAGAGTTTA+TGG - chr6_1:29708615-29708634 None:intergenic 35.0%
CAAGGGATGAGTTAAATCAT+AGG - chr6_1:29708729-29708748 None:intergenic 35.0%
ACAAGACTTGTAAGTCTCAA+GGG - chr6_1:29708746-29708765 None:intergenic 35.0%
TACAAGACTTGTAAGTCTCA+AGG - chr6_1:29708747-29708766 None:intergenic 35.0%
ACCATGTTTCCTTTACACCA+AGG + chr6_1:29705600-29705619 Msa0881710:CDS 40.0%
TAACTAGTTCATTGCTGCCT+TGG - chr6_1:29705620-29705639 None:intergenic 40.0%
TGTGGGGACTATTAGAAAAC+TGG - chr6_1:29705644-29705663 None:intergenic 40.0%
! GATCATGGGAGATTTTGTGT+TGG - chr6_1:29705671-29705690 None:intergenic 40.0%
GAGAGATTGAGAAGAAAAGG+AGG + chr6_1:29705838-29705857 Msa0881710:CDS 40.0%
GAAGAAAAGGAGGCAAGAAA+TGG + chr6_1:29705848-29705867 Msa0881710:CDS 40.0%
CTAACCTTGATGAACTCAAG+AGG - chr6_1:29705906-29705925 None:intergenic 40.0%
GAACGAACGTACCAGTTAAT+TGG - chr6_1:29706537-29706556 None:intergenic 40.0%
AAAACTCGCCAATTCTAAGC+TGG + chr6_1:29706793-29706812 Msa0881710:CDS 40.0%
CAAGTGGCTTAAAAGAGGAA+AGG + chr6_1:29706891-29706910 Msa0881710:CDS 40.0%
ATACCTCACACATGACACTT+TGG - chr6_1:29707006-29707025 None:intergenic 40.0%
!! ACACGATTTTGAAGGGTTTC+GGG - chr6_1:29707301-29707320 None:intergenic 40.0%
GCAAAATCATGGTATGATCG+CGG - chr6_1:29707341-29707360 None:intergenic 40.0%
TGCAAAGATCCCAAAAGGTT+AGG + chr6_1:29707853-29707872 Msa0881710:intron 40.0%
AGGAGGGACGAATGAAATTT+GGG - chr6_1:29707906-29707925 None:intergenic 40.0%
AATTCAGCTAATCTCGTGAG+AGG + chr6_1:29708170-29708189 Msa0881710:intron 40.0%
ATTAAAACACCCAGGAGGTT+AGG - chr6_1:29708215-29708234 None:intergenic 40.0%
ATCACCGTCAAACAACATGT+TGG + chr6_1:29708316-29708335 Msa0881710:intron 40.0%
! ACCCATCCAACCATATTTTC+TGG + chr6_1:29708357-29708376 Msa0881710:intron 40.0%
GCCTATCCAGAAAATATGGT+TGG - chr6_1:29708366-29708385 None:intergenic 40.0%
GTTAAGAGGAAGGGATGTAT+AGG - chr6_1:29708497-29708516 None:intergenic 40.0%
!!! TCTTTGTTTTCACCAAGCAC+AGG + chr6_1:29708820-29708839 Msa0881710:intron 40.0%
! GCCTTGGTGTAAAGGAAACA+TGG - chr6_1:29705604-29705623 None:intergenic 45.0%
! TCATTGCTGCCTTGGTGTAA+AGG - chr6_1:29705612-29705631 None:intergenic 45.0%
GGATCGGAGAGATGCATAAT+AGG - chr6_1:29705877-29705896 None:intergenic 45.0%
ACTCAAGAGGAAGCAAGGAT+CGG - chr6_1:29705893-29705912 None:intergenic 45.0%
GATGAACTCAAGAGGAAGCA+AGG - chr6_1:29705898-29705917 None:intergenic 45.0%
GCTTCCTCTTGAGTTCATCA+AGG + chr6_1:29705899-29705918 Msa0881710:CDS 45.0%
TATGATCGCGGCAAAATCGT+AGG - chr6_1:29707329-29707348 None:intergenic 45.0%
CAGGAGGGACGAATGAAATT+TGG - chr6_1:29707907-29707926 None:intergenic 45.0%
CAATCCGAATTCGATCAGGA+GGG - chr6_1:29707922-29707941 None:intergenic 45.0%
ACAATCCGAATTCGATCAGG+AGG - chr6_1:29707923-29707942 None:intergenic 45.0%
CGTACAATCCGAATTCGATC+AGG - chr6_1:29707926-29707945 None:intergenic 45.0%
CGTCGTTTGATTGAGCTCAA+AGG - chr6_1:29708098-29708117 None:intergenic 45.0%
TACCGTAAAACCTAACCTCC+TGG + chr6_1:29708202-29708221 Msa0881710:intron 45.0%
ACCGTAAAACCTAACCTCCT+GGG + chr6_1:29708203-29708222 Msa0881710:intron 45.0%
! ACCCAGGAGGTTAGGTTTTA+CGG - chr6_1:29708207-29708226 None:intergenic 45.0%
AGGAGTCGGACACCTTAATT+TGG - chr6_1:29708477-29708496 None:intergenic 45.0%
AGGAAGGGATGTATAGGAGT+CGG - chr6_1:29708491-29708510 None:intergenic 45.0%
TGGAATTGTTCACCTGTGCT+TGG - chr6_1:29708835-29708854 None:intergenic 45.0%
! GCTCCAAAGTGTCATGTGTG+AGG + chr6_1:29707000-29707019 Msa0881710:CDS 50.0%
TCGTCCCTCCTGATCGAATT+CGG + chr6_1:29707915-29707934 Msa0881710:intron 50.0%
TGAGGGCGACTCAACACATT+AGG - chr6_1:29708590-29708609 None:intergenic 50.0%
CGCCCTCATTCCATAAACTC+TGG + chr6_1:29708602-29708621 Msa0881710:intron 50.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 29705591 29708922 29705591 ID=Msa0881710;Name=Msa0881710
chr6_1 mRNA 29705591 29708922 29705591 ID=Msa0881710-mRNA-1;Parent=Msa0881710;Name=Msa0881710-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|0.25|0|5|0|230
chr6_1 exon 29705591 29705722 29705591 ID=Msa0881710-mRNA-1:exon:7427;Parent=Msa0881710-mRNA-1
chr6_1 exon 29705762 29705920 29705762 ID=Msa0881710-mRNA-1:exon:7428;Parent=Msa0881710-mRNA-1
chr6_1 exon 29706692 29706853 29706692 ID=Msa0881710-mRNA-1:exon:7429;Parent=Msa0881710-mRNA-1
chr6_1 exon 29706863 29707021 29706863 ID=Msa0881710-mRNA-1:exon:7430;Parent=Msa0881710-mRNA-1
chr6_1 exon 29708842 29708922 29708842 ID=Msa0881710-mRNA-1:exon:7431;Parent=Msa0881710-mRNA-1
chr6_1 CDS 29705591 29705722 29705591 ID=Msa0881710-mRNA-1:cds;Parent=Msa0881710-mRNA-1
chr6_1 CDS 29705762 29705920 29705762 ID=Msa0881710-mRNA-1:cds;Parent=Msa0881710-mRNA-1
chr6_1 CDS 29706692 29706853 29706692 ID=Msa0881710-mRNA-1:cds;Parent=Msa0881710-mRNA-1
chr6_1 CDS 29706863 29707021 29706863 ID=Msa0881710-mRNA-1:cds;Parent=Msa0881710-mRNA-1
chr6_1 CDS 29708842 29708922 29708842 ID=Msa0881710-mRNA-1:cds;Parent=Msa0881710-mRNA-1
Gene Sequence

>Msa0881710

ATGGAGCATACCATGTTTCCTTTACACCAAGGCAGCAATGAACTAGTTATCCAGTTTTCTAATAGTCCCCACAAACACCAACACAAAATCTCCCATGATCTGATTCTTGATAATAATTATTCTTCTTTGCTTCCAAATAATGAACTACTTTATGAGGCTGCTAAGAATCATGATAATTCTAATGAACAAATGAGGAAAATGATTCATAGAGAGATTGAGAAGAAAAGGAGGCAAGAAATGGCAACCTATTATGCATCTCTCCGATCCTTGCTTCCTCTTGAGTTCATCAAGGGAAAGCGATCAATATCTGATCATACGAATGAGGCAGTGAATTACATAAAACACATGCAAAATAATATCAATAAACTTGGTGCCAAGAGAGATGAACTCAAAAAACTCGCCAATTCTAAGCTGGAAAATAATGAGAGCAACCATGCATCATGCAATTTAAATAATAATGGAATTTTGAGAATTGAATTTACAAGTGGCTTAAAAGAGGAAAGGCTCAAACTTTCAGAGTTACTAAAATTATTGGCTAAAGAGGGACTTGAAGTTGATAGTTGCGTTACAACAGAAATCAATGGTAGATTGCTCCAAAGTGTCATGTGTGAGGTGAACAATTCCAACATTGTAGATCAATTTGAGCTGAGAAAGAAAATTGTCATGTTAATTCCTACAATCACATGTGATTGA
Protein sequence

>Msa0881710

MEHTMFPLHQGSNELVIQFSNSPHKHQHKISHDLILDNNYSSLLPNNELLYEAAKNHDNSNEQMRKMIHREIEKKRRQEMATYYASLRSLLPLEFIKGKRSISDHTNEAVNYIKHMQNNINKLGAKRDELKKLANSKLENNESNHASCNLNNNGILRIEFTSGLKEERLKLSELLKLLAKEGLEVDSCVTTEINGRLLQSVMCEVNNSNIVDQFELRKKIVMLIPTITCD*