AlfalfaGEDB | Msa0881710

M. sativa cultivar zhongmu-4 / Msa0881710

KEGG: -
GO: GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881710	XP_024630582.1	79.352	247	26	4	1	230	1	239	3.19e-131	379

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881710	sp\|Q9STJ7\|BH118_ARATH	39.759	166	90	4	64	223	1	162	4.67e-32	117

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881710	A0A072TL37	79.352	247	26	4	1	230	1	239	1.52e-131	379

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TFs/TRs:

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Gene ID	Type	Classification
Msa0881710	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0881710	Msa0881740	0.956453	2.846866e-114	-8.615850e-47
Msa0881710	Msa0887380	0.975503	4.499462e-140	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881710	MtrunA17_Chr6g0474671	79.352	247	26	4	1	230	1	239	2.93e-135	379
Msa0881710	MtrunA17_Chr1g0204351	50.204	245	99	7	5	229	1	242	3.57e-64	199
Msa0881710	MtrunA17_Chr1g0204361	39.216	153	82	3	65	207	19	170	1.27e-31	114
Msa0881710	MtrunA17_Chr6g0474681	38.764	178	96	4	62	230	3	176	7.54e-31	112

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0881710	AT4G25400.1	39.766	171	93	4	59	223	19	185	2.50e-33	119
Msa0881710	AT4G25410.1	38.554	166	89	3	69	221	47	212	1.82e-32	117
Msa0881710	AT5G51780.2	40.000	175	90	4	61	221	21	194	3.15e-31	114
Msa0881710	AT5G51780.1	40.116	172	88	4	64	221	1	171	3.21e-31	113
Msa0881710	AT5G51790.1	38.824	170	89	2	65	221	27	194	1.09e-30	112
Msa0881710	AT4G25400.2	42.484	153	78	4	59	205	19	167	1.52e-30	112
Msa0881710	AT5G51790.3	38.824	170	89	2	65	221	92	259	3.91e-30	113
Msa0881710	AT5G51790.4	40.260	154	77	2	65	205	27	178	5.18e-28	105
Msa0881710	AT5G51790.2	40.260	154	77	2	65	205	92	243	1.91e-27	105
Msa0881710	AT1G62975.1	28.700	223	130	4	28	223	39	259	1.49e-21	90.1

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Find 34 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCGCCAATTCTAAGC+TGG	0.500520	6_1:+29706793	Msa0881710:CDS
AAATAATGAACTACTTTATG+AGG	0.483202	6_1:+29705764	Msa0881710:CDS
AATATCTGATCATACGAATG+AGG	0.579968	6_1:+29706703	Msa0881710:CDS
ACCATGTTTCCTTTACACCA+AGG	0.675993	6_1:+29705600	Msa0881710:CDS
ACTAAAATTATTGGCTAAAG+AGG	0.322448	6_1:+29706931	Msa0881710:CDS
ACTCAAGAGGAAGCAAGGAT+CGG	0.611742	6_1:-29705890	None:intergenic
AGTCAATCACATGTGATTGT+AGG	0.431382	6_1:-29708902	None:intergenic
ATAATTCTAATGAACAAATG+AGG	0.576628	6_1:+29705802	Msa0881710:CDS
ATACCTCACACATGACACTT+TGG	0.523655	6_1:-29707003	None:intergenic
ATAGAGAGATTGAGAAGAAA+AGG	0.391251	6_1:+29705835	Msa0881710:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAGAGAGATTGAGAAGAAA+AGG	+	chr6_1:29705835-29705854	Msa0881710:CDS	30.0%
CAAATCATACATATCTCATC+TGG	-	chr6_1:29706095-29706114	None:intergenic	30.0%
ATCCGATTAAACCAATTAAC+TGG	+	chr6_1:29706523-29706542	Msa0881710:intron	30.0%
AATATCTGATCATACGAATG+AGG	+	chr6_1:29706703-29706722	Msa0881710:CDS	30.0%
CATTTAAATTGCATGATGCA+TGG	-	chr6_1:29706835-29706854	None:intergenic	30.0%
ATTTACAAGTGGCTTAAAAG+AGG	+	chr6_1:29706886-29706905	Msa0881710:CDS	30.0%
GTGTTTACATTGTCAAAATC+GGG	+	chr6_1:29707079-29707098	Msa0881710:intron	30.0%
TAAAATCGCAATCGAAATCA+AGG	+	chr6_1:29707144-29707163	Msa0881710:intron	30.0%
AATGGAAATGATTGAAATCG+AGG	+	chr6_1:29707249-29707268	Msa0881710:intron	30.0%
TCGAAAAACATGCAAAATCA+TGG	-	chr6_1:29707352-29707371	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	29705591	29708922	29705591	ID=Msa0881710;Name=Msa0881710
chr6_1	mRNA	29705591	29708922	29705591	ID=Msa0881710-mRNA-1;Parent=Msa0881710;Name=Msa0881710-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|0\|0\|1\|0.25\|0\|5\|0\|230
chr6_1	exon	29705591	29705722	29705591	ID=Msa0881710-mRNA-1:exon:7427;Parent=Msa0881710-mRNA-1
chr6_1	exon	29705762	29705920	29705762	ID=Msa0881710-mRNA-1:exon:7428;Parent=Msa0881710-mRNA-1
chr6_1	exon	29706692	29706853	29706692	ID=Msa0881710-mRNA-1:exon:7429;Parent=Msa0881710-mRNA-1
chr6_1	exon	29706863	29707021	29706863	ID=Msa0881710-mRNA-1:exon:7430;Parent=Msa0881710-mRNA-1
chr6_1	exon	29708842	29708922	29708842	ID=Msa0881710-mRNA-1:exon:7431;Parent=Msa0881710-mRNA-1
chr6_1	CDS	29705591	29705722	29705591	ID=Msa0881710-mRNA-1:cds;Parent=Msa0881710-mRNA-1
chr6_1	CDS	29705762	29705920	29705762	ID=Msa0881710-mRNA-1:cds;Parent=Msa0881710-mRNA-1
chr6_1	CDS	29706692	29706853	29706692	ID=Msa0881710-mRNA-1:cds;Parent=Msa0881710-mRNA-1
chr6_1	CDS	29706863	29707021	29706863	ID=Msa0881710-mRNA-1:cds;Parent=Msa0881710-mRNA-1
chr6_1	CDS	29708842	29708922	29708842	ID=Msa0881710-mRNA-1:cds;Parent=Msa0881710-mRNA-1

Gene Sequence

>Msa0881710

ATGGAGCATACCATGTTTCCTTTACACCAAGGCAGCAATGAACTAGTTATCCAGTTTTCTAATAGTCCCCACAAACACCAACACAAAATCTCCCATGATCTGATTCTTGATAATAATTATTCTTCTTTGCTTCCAAATAATGAACTACTTTATGAGGCTGCTAAGAATCATGATAATTCTAATGAACAAATGAGGAAAATGATTCATAGAGAGATTGAGAAGAAAAGGAGGCAAGAAATGGCAACCTATTATGCATCTCTCCGATCCTTGCTTCCTCTTGAGTTCATCAAGGGAAAGCGATCAATATCTGATCATACGAATGAGGCAGTGAATTACATAAAACACATGCAAAATAATATCAATAAACTTGGTGCCAAGAGAGATGAACTCAAAAAACTCGCCAATTCTAAGCTGGAAAATAATGAGAGCAACCATGCATCATGCAATTTAAATAATAATGGAATTTTGAGAATTGAATTTACAAGTGGCTTAAAAGAGGAAAGGCTCAAACTTTCAGAGTTACTAAAATTATTGGCTAAAGAGGGACTTGAAGTTGATAGTTGCGTTACAACAGAAATCAATGGTAGATTGCTCCAAAGTGTCATGTGTGAGGTGAACAATTCCAACATTGTAGATCAATTTGAGCTGAGAAAGAAAATTGTCATGTTAATTCCTACAATCACATGTGATTGA

Protein sequence

>Msa0881710

MEHTMFPLHQGSNELVIQFSNSPHKHQHKISHDLILDNNYSSLLPNNELLYEAAKNHDNSNEQMRKMIHREIEKKRRQEMATYYASLRSLLPLEFIKGKRSISDHTNEAVNYIKHMQNNINKLGAKRDELKKLANSKLENNESNHASCNLNNNGILRIEFTSGLKEERLKLSELLKLLAKEGLEVDSCVTTEINGRLLQSVMCEVNNSNIVDQFELRKKIVMLIPTITCD*