Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887380 | XP_024630582.1 | 79.352 | 247 | 26 | 4 | 1 | 230 | 1 | 239 | 3.19e-131 | 379 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887380 | sp|Q9STJ7|BH118_ARATH | 39.759 | 166 | 90 | 4 | 64 | 223 | 1 | 162 | 4.67e-32 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887380 | A0A072TL37 | 79.352 | 247 | 26 | 4 | 1 | 230 | 1 | 239 | 1.52e-131 | 379 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0887380 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0881710 | Msa0887380 | 0.975503 | 4.499462e-140 | -8.615850e-47 |
| Msa0881740 | Msa0887380 | 0.959831 | 7.073872e-118 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887380 | MtrunA17_Chr6g0474671 | 79.352 | 247 | 26 | 4 | 1 | 230 | 1 | 239 | 2.93e-135 | 379 |
| Msa0887380 | MtrunA17_Chr1g0204351 | 50.204 | 245 | 99 | 7 | 5 | 229 | 1 | 242 | 3.57e-64 | 199 |
| Msa0887380 | MtrunA17_Chr1g0204361 | 39.216 | 153 | 82 | 3 | 65 | 207 | 19 | 170 | 1.27e-31 | 114 |
| Msa0887380 | MtrunA17_Chr6g0474681 | 38.764 | 178 | 96 | 4 | 62 | 230 | 3 | 176 | 7.54e-31 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887380 | AT4G25400.1 | 39.766 | 171 | 93 | 4 | 59 | 223 | 19 | 185 | 2.50e-33 | 119 |
| Msa0887380 | AT4G25410.1 | 38.554 | 166 | 89 | 3 | 69 | 221 | 47 | 212 | 1.82e-32 | 117 |
| Msa0887380 | AT5G51780.2 | 40.000 | 175 | 90 | 4 | 61 | 221 | 21 | 194 | 3.15e-31 | 114 |
| Msa0887380 | AT5G51780.1 | 40.116 | 172 | 88 | 4 | 64 | 221 | 1 | 171 | 3.21e-31 | 113 |
| Msa0887380 | AT5G51790.1 | 38.824 | 170 | 89 | 2 | 65 | 221 | 27 | 194 | 1.09e-30 | 112 |
| Msa0887380 | AT4G25400.2 | 42.484 | 153 | 78 | 4 | 59 | 205 | 19 | 167 | 1.52e-30 | 112 |
| Msa0887380 | AT5G51790.3 | 38.824 | 170 | 89 | 2 | 65 | 221 | 92 | 259 | 3.91e-30 | 113 |
| Msa0887380 | AT5G51790.4 | 40.260 | 154 | 77 | 2 | 65 | 205 | 27 | 178 | 5.18e-28 | 105 |
| Msa0887380 | AT5G51790.2 | 40.260 | 154 | 77 | 2 | 65 | 205 | 92 | 243 | 1.91e-27 | 105 |
| Msa0887380 | AT1G62975.1 | 28.700 | 223 | 130 | 4 | 28 | 223 | 39 | 259 | 1.49e-21 | 90.1 |
| Msa0887380 | AT1G62975.2 | 48.235 | 85 | 42 | 1 | 52 | 136 | 63 | 145 | 6.21e-20 | 85.5 |
| Msa0887380 | AT1G12540.1 | 32.105 | 190 | 111 | 4 | 50 | 223 | 62 | 249 | 7.79e-19 | 82.8 |
Find 34 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGAGTTACTAAAATTAT+TGG | 0.157017 | 6_1:+48662609 | Msa0887380:CDS |
| TCATAAAGTAGTTCATTATT+TGG | 0.217906 | 6_1:-48661448 | None:intergenic |
| TTAAATGTTCACCAGAATAA+TGG | 0.283582 | 6_1:+48662535 | Msa0887380:intron |
| ACTAAAATTATTGGCTAAAG+AGG | 0.322448 | 6_1:+48662618 | Msa0887380:CDS |
| GGATCGGAGAGATGCATAAT+AGG | 0.379636 | 6_1:-48661560 | None:intergenic |
| TGTGGGGACTATTAGAAAAC+TGG | 0.390874 | 6_1:-48661327 | None:intergenic |
| ATAGAGAGATTGAGAAGAAA+AGG | 0.391251 | 6_1:+48661521 | Msa0887380:CDS |
| AGTCAATCACATGTGATTGT+AGG | 0.431382 | 6_1:-48664588 | None:intergenic |
| CAAAATAATATCAATAAACT+TGG | 0.435192 | 6_1:+48662436 | Msa0887380:CDS |
| TAACTAGTTCATTGCTGCCT+TGG | 0.465128 | 6_1:-48661303 | None:intergenic |
| TCATTGCTGCCTTGGTGTAA+AGG | 0.472102 | 6_1:-48661295 | None:intergenic |
| CTCAAATTGATCTACAATGT+TGG | 0.473658 | 6_1:-48664538 | None:intergenic |
| AAATAATGAACTACTTTATG+AGG | 0.483202 | 6_1:+48661450 | Msa0887380:CDS |
| TATTATCAAGAATCAGATCA+TGG | 0.493803 | 6_1:-48661369 | None:intergenic |
| AAAACTCGCCAATTCTAAGC+TGG | 0.500520 | 6_1:+48662480 | Msa0887380:CDS |
| GAAGAAAAGGAGGCAAGAAA+TGG | 0.503359 | 6_1:+48661534 | Msa0887380:CDS |
| ATTTACAAGTGGCTTAAAAG+AGG | 0.506030 | 6_1:+48662573 | Msa0887380:CDS |
| ATACCTCACACATGACACTT+TGG | 0.523655 | 6_1:-48662690 | None:intergenic |
| GCTTCCTCTTGAGTTCATCA+AGG | 0.524427 | 6_1:+48661585 | Msa0887380:CDS |
| TTGAGAATTGAATTTACAAG+TGG | 0.546189 | 6_1:+48662562 | Msa0887380:CDS |
| CTAAAATTATTGGCTAAAGA+GGG | 0.551865 | 6_1:+48662619 | Msa0887380:CDS |
| CAAGTGGCTTAAAAGAGGAA+AGG | 0.561553 | 6_1:+48662578 | Msa0887380:CDS |
| TGCGTTACAACAGAAATCAA+TGG | 0.564243 | 6_1:+48662658 | Msa0887380:CDS |
| ATAATTCTAATGAACAAATG+AGG | 0.576628 | 6_1:+48661488 | Msa0887380:CDS |
| CATTTAAATTGCATGATGCA+TGG | 0.579018 | 6_1:-48662519 | None:intergenic |
| AATATCTGATCATACGAATG+AGG | 0.579968 | 6_1:+48662390 | Msa0887380:CDS |
| ATTATCAAGAATCAGATCAT+GGG | 0.584403 | 6_1:-48661368 | None:intergenic |
| CTAACCTTGATGAACTCAAG+AGG | 0.593616 | 6_1:-48661589 | None:intergenic |
| GATGAACTCAAGAGGAAGCA+AGG | 0.597305 | 6_1:-48661581 | None:intergenic |
| GAGAGATTGAGAAGAAAAGG+AGG | 0.599248 | 6_1:+48661524 | Msa0887380:CDS |
| ACTCAAGAGGAAGCAAGGAT+CGG | 0.611742 | 6_1:-48661576 | None:intergenic |
| GCCTTGGTGTAAAGGAAACA+TGG | 0.615909 | 6_1:-48661287 | None:intergenic |
| ACCATGTTTCCTTTACACCA+AGG | 0.675993 | 6_1:+48661286 | Msa0887380:CDS |
| GCTCCAAAGTGTCATGTGTG+AGG | 0.704417 | 6_1:+48662687 | Msa0887380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTCTTTTGAAATTAAT+TGG | + | chr6_1:48661649-48661668 | Msa0887380:intron | 10.0% |
| !!! | TTTTAATTGGAATTTTTATA+AGG | - | chr6_1:48661705-48661724 | None:intergenic | 10.0% |
| !! | ATCAATACATATATATAAAT+AGG | + | chr6_1:48661733-48661752 | Msa0887380:intron | 10.0% |
| !! | TAATATTATGAAATACAAAA+AGG | + | chr6_1:48664227-48664246 | Msa0887380:intron | 10.0% |
| !!! | TTGATTTATCATCTTTTAAT+TGG | - | chr6_1:48661718-48661737 | None:intergenic | 15.0% |
| !! | AGCAAAAAGAAAATTAAAAT+TGG | - | chr6_1:48662089-48662108 | None:intergenic | 15.0% |
| !!! | TTTTTTCACATATACAAATT+TGG | + | chr6_1:48662152-48662171 | Msa0887380:intron | 15.0% |
| !!! | TTTAGTTTATTTAAATTCGT+CGG | + | chr6_1:48662255-48662274 | Msa0887380:intron | 15.0% |
| !! | CAAATTATTTCAAAAAAATC+TGG | - | chr6_1:48662343-48662362 | None:intergenic | 15.0% |
| !!! | AATTTGCTTAAAATATTTAC+AGG | + | chr6_1:48662357-48662376 | Msa0887380:intron | 15.0% |
| !! | ATTTGCTTAAAATATTTACA+GGG | + | chr6_1:48662358-48662377 | Msa0887380:intron | 15.0% |
| !! | CAAAATAATATCAATAAACT+TGG | + | chr6_1:48662436-48662455 | Msa0887380:CDS | 15.0% |
| !! | AAATGTAACTATAATTATTG+TGG | + | chr6_1:48663180-48663199 | Msa0887380:intron | 15.0% |
| !!! | CAAAGAAAAATGTTTTTTAA+AGG | + | chr6_1:48663468-48663487 | Msa0887380:intron | 15.0% |
| !! | AGAATAAAATTAGGTTTAAA+GGG | - | chr6_1:48664109-48664128 | None:intergenic | 15.0% |
| !! | AAGAATAAAATTAGGTTTAA+AGG | - | chr6_1:48664110-48664129 | None:intergenic | 15.0% |
| !!! | TAAGTAAACTTACTAAATTT+TGG | - | chr6_1:48664205-48664224 | None:intergenic | 15.0% |
| !!! | ATTAGAATAAATTTTATCCA+TGG | - | chr6_1:48664483-48664502 | None:intergenic | 15.0% |
| !! | TCATAAAGTAGTTCATTATT+TGG | - | chr6_1:48661451-48661470 | None:intergenic | 20.0% |
| !! | AAATAATGAACTACTTTATG+AGG | + | chr6_1:48661450-48661469 | Msa0887380:CDS | 20.0% |
| !! | ATAATTCTAATGAACAAATG+AGG | + | chr6_1:48661488-48661507 | Msa0887380:CDS | 20.0% |
| !! | TTTATATCACTTATTTCATC+CGG | + | chr6_1:48662127-48662146 | Msa0887380:intron | 20.0% |
| !!! | ATATACAAATTTGGTTCAAT+CGG | + | chr6_1:48662161-48662180 | Msa0887380:intron | 20.0% |
| !! | TAGTTAATATGAACGTTATT+TGG | - | chr6_1:48662307-48662326 | None:intergenic | 20.0% |
| !! | TTCAGAGTTACTAAAATTAT+TGG | + | chr6_1:48662609-48662628 | Msa0887380:CDS | 20.0% |
| !! | GTACTTATATTATGTGATAT+AGG | + | chr6_1:48663152-48663171 | Msa0887380:intron | 20.0% |
| !!! | TTATTGGTTTAAATCATTGT+TGG | + | chr6_1:48663284-48663303 | Msa0887380:intron | 20.0% |
| !! | ATCATTGATGTAATATATGT+TGG | - | chr6_1:48663509-48663528 | None:intergenic | 20.0% |
| !! | AATAAAATATTAAAACACCC+AGG | - | chr6_1:48663909-48663928 | None:intergenic | 20.0% |
| !!! | TTATTTTTTTGAATGTCTGA+AGG | + | chr6_1:48663924-48663943 | Msa0887380:intron | 20.0% |
| !!! | TATTTTTTTGAATGTCTGAA+GGG | + | chr6_1:48663925-48663944 | Msa0887380:intron | 20.0% |
| !!! | GGTATTTTTTATCATGTTAT+TGG | + | chr6_1:48663946-48663965 | Msa0887380:intron | 20.0% |
| !! | GAATAAAATTAGGTTTAAAG+GGG | - | chr6_1:48664108-48664127 | None:intergenic | 20.0% |
| !! | GGAAGTTAAAGAATAAAATT+AGG | - | chr6_1:48664118-48664137 | None:intergenic | 20.0% |
| ! | ATTATCAAGAATCAGATCAT+GGG | - | chr6_1:48661371-48661390 | None:intergenic | 25.0% |
| ! | TATTATCAAGAATCAGATCA+TGG | - | chr6_1:48661372-48661391 | None:intergenic | 25.0% |
| !! | GGAATTTTTATAAGGAGATT+AGG | - | chr6_1:48661697-48661716 | None:intergenic | 25.0% |
| !! | CTTCTCTCTAATATATTTTG+TGG | + | chr6_1:48661831-48661850 | Msa0887380:intron | 25.0% |
| ! | TTGTATATGTGAAAAAAAGC+CGG | - | chr6_1:48662149-48662168 | None:intergenic | 25.0% |
| ! | TTTAATCGGATAAAATCAAC+CGG | - | chr6_1:48662201-48662220 | None:intergenic | 25.0% |
| !! | TACCAGTTAATTGGTTTAAT+CGG | - | chr6_1:48662215-48662234 | None:intergenic | 25.0% |
| ! | TGAACGTTATTTGGATTAAT+CGG | - | chr6_1:48662298-48662317 | None:intergenic | 25.0% |
| !! | ATTATTTTCCAGCTTAGAAT+TGG | - | chr6_1:48662491-48662510 | None:intergenic | 25.0% |
| ! | TTAAATGTTCACCAGAATAA+TGG | + | chr6_1:48662535-48662554 | Msa0887380:intron | 25.0% |
| ! | TTCTCAAAATTCCATTATTC+TGG | - | chr6_1:48662549-48662568 | None:intergenic | 25.0% |
| ! | TTGAGAATTGAATTTACAAG+TGG | + | chr6_1:48662562-48662581 | Msa0887380:CDS | 25.0% |
| !! | ACTAAAATTATTGGCTAAAG+AGG | + | chr6_1:48662618-48662637 | Msa0887380:CDS | 25.0% |
| !! | CTAAAATTATTGGCTAAAGA+GGG | + | chr6_1:48662619-48662638 | Msa0887380:CDS | 25.0% |
| ! | AAACATTGTAGCAAAATTCA+TGG | + | chr6_1:48662733-48662752 | Msa0887380:intron | 25.0% |
| ! | TGTGTTTACATTGTCAAAAT+CGG | + | chr6_1:48662765-48662784 | Msa0887380:intron | 25.0% |
| ! | TATGATCGAACGAAATAAAA+TGG | + | chr6_1:48662877-48662896 | Msa0887380:intron | 25.0% |
| !!! | CTATTGATTTAGATCAAAGA+GGG | + | chr6_1:48663064-48663083 | Msa0887380:intron | 25.0% |
| ! | TCTAATACTCATTCTCTTAT+TGG | + | chr6_1:48663268-48663287 | Msa0887380:intron | 25.0% |
| ! | AAAATTGAACATACACAAAG+TGG | + | chr6_1:48663318-48663337 | Msa0887380:intron | 25.0% |
| ! | TTTAGTACTCACTCATTTAT+TGG | - | chr6_1:48663365-48663384 | None:intergenic | 25.0% |
| ! | CTTTATGTACTTCTTTCATA+AGG | + | chr6_1:48663428-48663447 | Msa0887380:intron | 25.0% |
| !!! | TGTTTTTTAAAGGAGAGTTA+AGG | + | chr6_1:48663478-48663497 | Msa0887380:intron | 25.0% |
| !!! | AATAAGTTGATTGCATTCAT+TGG | - | chr6_1:48663651-48663670 | None:intergenic | 25.0% |
| ! | ATGAATGCAATCAACTTATT+AGG | + | chr6_1:48663651-48663670 | Msa0887380:intron | 25.0% |
| ! | TGAATGCAATCAACTTATTA+GGG | + | chr6_1:48663652-48663671 | Msa0887380:intron | 25.0% |
| !! | TAGCAATTACTTGATCATTT+TGG | - | chr6_1:48664139-48664158 | None:intergenic | 25.0% |
| ! | AGTAATTGCTATCCAAATTA+AGG | + | chr6_1:48664148-48664167 | Msa0887380:intron | 25.0% |
| !!! | TAAATTTTGGTTAAGAGGAA+GGG | - | chr6_1:48664192-48664211 | None:intergenic | 25.0% |
| !!! | CTTACTAAATTTTGGTTAAG+AGG | - | chr6_1:48664197-48664216 | None:intergenic | 25.0% |
| ! | AGGTCTATTAAATTCTTCTA+AGG | + | chr6_1:48664247-48664266 | Msa0887380:intron | 25.0% |
| ! | GGTCTATTAAATTCTTCTAA+GGG | + | chr6_1:48664248-48664267 | Msa0887380:intron | 25.0% |
| !! | ATATGCTTGATTTTACACAT+AGG | + | chr6_1:48664321-48664340 | Msa0887380:intron | 25.0% |
| ATAGAGAGATTGAGAAGAAA+AGG | + | chr6_1:48661521-48661540 | Msa0887380:CDS | 30.0% | |
| CAAATCATACATATCTCATC+TGG | - | chr6_1:48661781-48661800 | None:intergenic | 30.0% | |
| ! | AGAGTTGCTTTCTATTCATT+TGG | - | chr6_1:48661995-48662014 | None:intergenic | 30.0% |
| ATCCGATTAAACCAATTAAC+TGG | + | chr6_1:48662210-48662229 | Msa0887380:intron | 30.0% | |
| AATATCTGATCATACGAATG+AGG | + | chr6_1:48662390-48662409 | Msa0887380:CDS | 30.0% | |
| !!! | TTTTTTGAGTTCATCTCTCT+TGG | - | chr6_1:48662464-48662483 | None:intergenic | 30.0% |
| CATTTAAATTGCATGATGCA+TGG | - | chr6_1:48662522-48662541 | None:intergenic | 30.0% | |
| ATTTACAAGTGGCTTAAAAG+AGG | + | chr6_1:48662573-48662592 | Msa0887380:CDS | 30.0% | |
| GTGTTTACATTGTCAAAATC+GGG | + | chr6_1:48662766-48662785 | Msa0887380:intron | 30.0% | |
| TAAAATCGCAATCGAAATCA+AGG | + | chr6_1:48662831-48662850 | Msa0887380:intron | 30.0% | |
| AATGGAAATGATTGAAATCG+AGG | + | chr6_1:48662936-48662955 | Msa0887380:intron | 30.0% | |
| ! | GGTTTTTACACGATTTTGAA+GGG | - | chr6_1:48662995-48663014 | None:intergenic | 30.0% |
| ! | AGGTTTTTACACGATTTTGA+AGG | - | chr6_1:48662996-48663015 | None:intergenic | 30.0% |
| TCGAAAAACATGCAAAATCA+TGG | - | chr6_1:48663039-48663058 | None:intergenic | 30.0% | |
| !! | GCTATTGATTTAGATCAAAG+AGG | + | chr6_1:48663063-48663082 | Msa0887380:intron | 30.0% |
| TAACATTACTCAAGTCACAA+AGG | - | chr6_1:48663223-48663242 | None:intergenic | 30.0% | |
| AAGAGAATGAGTATTAGAGA+GGG | - | chr6_1:48663266-48663285 | None:intergenic | 30.0% | |
| TAAGAGAATGAGTATTAGAG+AGG | - | chr6_1:48663267-48663286 | None:intergenic | 30.0% | |
| ! | GATTAGATTCCTAACCTTTT+GGG | - | chr6_1:48663552-48663571 | None:intergenic | 30.0% |
| ! | AGATTAGATTCCTAACCTTT+TGG | - | chr6_1:48663553-48663572 | None:intergenic | 30.0% |
| GAATGCAATCAACTTATTAG+GGG | + | chr6_1:48663653-48663672 | Msa0887380:intron | 30.0% | |
| AAAATATTAAAACACCCAGG+AGG | - | chr6_1:48663906-48663925 | None:intergenic | 30.0% | |
| ! | GATTAGTCACTACTAAAATG+TGG | - | chr6_1:48663985-48664004 | None:intergenic | 30.0% |
| ! | ATATCCAACATGTTGTTTGA+CGG | - | chr6_1:48664009-48664028 | None:intergenic | 30.0% |
| AACAACATGTTGGATATGTA+AGG | + | chr6_1:48664012-48664031 | Msa0887380:intron | 30.0% | |
| !!! | CTAAATTTTGGTTAAGAGGA+AGG | - | chr6_1:48664193-48664212 | None:intergenic | 30.0% |
| ACATTACATTTCATGAGTCA+TGG | + | chr6_1:48664379-48664398 | Msa0887380:intron | 30.0% | |
| ! | TGTTAAGCAATCTAAAACCA+TGG | + | chr6_1:48664463-48664482 | Msa0887380:intron | 30.0% |
| CTCAAATTGATCTACAATGT+TGG | - | chr6_1:48664541-48664560 | None:intergenic | 30.0% | |
| !! | ATTTTGTGTTGGTGTTTGTG+GGG | - | chr6_1:48661346-48661365 | None:intergenic | 35.0% |
| !! | GATTTTGTGTTGGTGTTTGT+GGG | - | chr6_1:48661347-48661366 | None:intergenic | 35.0% |
| !! | AGATTTTGTGTTGGTGTTTG+TGG | - | chr6_1:48661348-48661367 | None:intergenic | 35.0% |
| TGGTACCTACTTCACTATAT+AGG | + | chr6_1:48661669-48661688 | Msa0887380:intron | 35.0% | |
| AGGATCCTATATAGTGAAGT+AGG | - | chr6_1:48661677-48661696 | None:intergenic | 35.0% | |
| !!! | ATCGGAAACTGTTACTTTTC+CGG | + | chr6_1:48662179-48662198 | Msa0887380:intron | 35.0% |
| AATTAACTGGTACGTTCGTT+CGG | + | chr6_1:48662223-48662242 | Msa0887380:intron | 35.0% | |
| TGCGTTACAACAGAAATCAA+TGG | + | chr6_1:48662658-48662677 | Msa0887380:CDS | 35.0% | |
| AAGATGTCGATGACATATGA+TGG | + | chr6_1:48662907-48662926 | Msa0887380:intron | 35.0% | |
| ! | GACATATGATGGTAACGAAA+TGG | + | chr6_1:48662918-48662937 | Msa0887380:intron | 35.0% |
| !! | TACACGATTTTGAAGGGTTT+CGG | - | chr6_1:48662989-48663008 | None:intergenic | 35.0% |
| !! | GATCTCGATTTTGACAACAA+TGG | + | chr6_1:48663111-48663130 | Msa0887380:intron | 35.0% |
| ATTGAACATACACAAAGTGG+TGG | + | chr6_1:48663321-48663340 | Msa0887380:intron | 35.0% | |
| TTGAACATACACAAAGTGGT+GGG | + | chr6_1:48663322-48663341 | Msa0887380:intron | 35.0% | |
| AAGTACATAAAGTCAAGTCG+AGG | - | chr6_1:48663420-48663439 | None:intergenic | 35.0% | |
| ! | TGATTTGCAAAGATCCCAAA+AGG | + | chr6_1:48663535-48663554 | Msa0887380:intron | 35.0% |
| GTTGATTGCATTCATTGGTA+GGG | - | chr6_1:48663646-48663665 | None:intergenic | 35.0% | |
| AGTTGATTGCATTCATTGGT+AGG | - | chr6_1:48663647-48663666 | None:intergenic | 35.0% | |
| TAGTCACTACTAAAATGTGG+CGG | - | chr6_1:48663982-48664001 | None:intergenic | 35.0% | |
| AACATGTTGGATATGTAAGG+TGG | + | chr6_1:48664015-48664034 | Msa0887380:intron | 35.0% | |
| ACATGTTGGATATGTAAGGT+GGG | + | chr6_1:48664016-48664035 | Msa0887380:intron | 35.0% | |
| TCCAGAAAATATGGTTGGAT+GGG | - | chr6_1:48664047-48664066 | None:intergenic | 35.0% | |
| ATCCAGAAAATATGGTTGGA+TGG | - | chr6_1:48664048-48664067 | None:intergenic | 35.0% | |
| ! | TCCAACCATATTTTCTGGAT+AGG | + | chr6_1:48664048-48664067 | Msa0887380:intron | 35.0% |
| TGTTGCCTATCCAGAAAATA+TGG | - | chr6_1:48664056-48664075 | None:intergenic | 35.0% | |
| AACCAGAGTTTATGGAATGA+GGG | - | chr6_1:48664293-48664312 | None:intergenic | 35.0% | |
| TAACCAGAGTTTATGGAATG+AGG | - | chr6_1:48664294-48664313 | None:intergenic | 35.0% | |
| GCATGTATAACCAGAGTTTA+TGG | - | chr6_1:48664301-48664320 | None:intergenic | 35.0% | |
| CAAGGGATGAGTTAAATCAT+AGG | - | chr6_1:48664415-48664434 | None:intergenic | 35.0% | |
| ACAAGACTTGTAAGTCTCAA+GGG | - | chr6_1:48664432-48664451 | None:intergenic | 35.0% | |
| TACAAGACTTGTAAGTCTCA+AGG | - | chr6_1:48664433-48664452 | None:intergenic | 35.0% | |
| ACCATGTTTCCTTTACACCA+AGG | + | chr6_1:48661286-48661305 | Msa0887380:CDS | 40.0% | |
| TAACTAGTTCATTGCTGCCT+TGG | - | chr6_1:48661306-48661325 | None:intergenic | 40.0% | |
| TGTGGGGACTATTAGAAAAC+TGG | - | chr6_1:48661330-48661349 | None:intergenic | 40.0% | |
| ! | GATCATGGGAGATTTTGTGT+TGG | - | chr6_1:48661357-48661376 | None:intergenic | 40.0% |
| GAGAGATTGAGAAGAAAAGG+AGG | + | chr6_1:48661524-48661543 | Msa0887380:CDS | 40.0% | |
| GAAGAAAAGGAGGCAAGAAA+TGG | + | chr6_1:48661534-48661553 | Msa0887380:CDS | 40.0% | |
| CTAACCTTGATGAACTCAAG+AGG | - | chr6_1:48661592-48661611 | None:intergenic | 40.0% | |
| GAACGAACGTACCAGTTAAT+TGG | - | chr6_1:48662224-48662243 | None:intergenic | 40.0% | |
| AAAACTCGCCAATTCTAAGC+TGG | + | chr6_1:48662480-48662499 | Msa0887380:CDS | 40.0% | |
| CAAGTGGCTTAAAAGAGGAA+AGG | + | chr6_1:48662578-48662597 | Msa0887380:CDS | 40.0% | |
| ATACCTCACACATGACACTT+TGG | - | chr6_1:48662693-48662712 | None:intergenic | 40.0% | |
| !! | ACACGATTTTGAAGGGTTTC+GGG | - | chr6_1:48662988-48663007 | None:intergenic | 40.0% |
| GCAAAATCATGGTATGATCG+CGG | - | chr6_1:48663028-48663047 | None:intergenic | 40.0% | |
| TGCAAAGATCCCAAAAGGTT+AGG | + | chr6_1:48663540-48663559 | Msa0887380:intron | 40.0% | |
| AGGAGGGACGAATGAAATTT+GGG | - | chr6_1:48663593-48663612 | None:intergenic | 40.0% | |
| AATTCAGCTAATCTCGTGAG+AGG | + | chr6_1:48663856-48663875 | Msa0887380:intron | 40.0% | |
| ATTAAAACACCCAGGAGGTT+AGG | - | chr6_1:48663901-48663920 | None:intergenic | 40.0% | |
| ATCACCGTCAAACAACATGT+TGG | + | chr6_1:48664002-48664021 | Msa0887380:intron | 40.0% | |
| ! | ACCCATCCAACCATATTTTC+TGG | + | chr6_1:48664043-48664062 | Msa0887380:intron | 40.0% |
| GCCTATCCAGAAAATATGGT+TGG | - | chr6_1:48664052-48664071 | None:intergenic | 40.0% | |
| GTTAAGAGGAAGGGATGTAT+AGG | - | chr6_1:48664183-48664202 | None:intergenic | 40.0% | |
| !!! | TCTTTGTTTTCACCAAGCAC+AGG | + | chr6_1:48664506-48664525 | Msa0887380:intron | 40.0% |
| ! | GCCTTGGTGTAAAGGAAACA+TGG | - | chr6_1:48661290-48661309 | None:intergenic | 45.0% |
| ! | TCATTGCTGCCTTGGTGTAA+AGG | - | chr6_1:48661298-48661317 | None:intergenic | 45.0% |
| GGATCGGAGAGATGCATAAT+AGG | - | chr6_1:48661563-48661582 | None:intergenic | 45.0% | |
| ACTCAAGAGGAAGCAAGGAT+CGG | - | chr6_1:48661579-48661598 | None:intergenic | 45.0% | |
| GATGAACTCAAGAGGAAGCA+AGG | - | chr6_1:48661584-48661603 | None:intergenic | 45.0% | |
| GCTTCCTCTTGAGTTCATCA+AGG | + | chr6_1:48661585-48661604 | Msa0887380:CDS | 45.0% | |
| TATGATCGCGGCAAAATCGT+AGG | - | chr6_1:48663016-48663035 | None:intergenic | 45.0% | |
| CAGGAGGGACGAATGAAATT+TGG | - | chr6_1:48663594-48663613 | None:intergenic | 45.0% | |
| CAATCCGAATTCGATCAGGA+GGG | - | chr6_1:48663609-48663628 | None:intergenic | 45.0% | |
| ACAATCCGAATTCGATCAGG+AGG | - | chr6_1:48663610-48663629 | None:intergenic | 45.0% | |
| CGTACAATCCGAATTCGATC+AGG | - | chr6_1:48663613-48663632 | None:intergenic | 45.0% | |
| CGTCGTTTGATTGAGCTCAA+AGG | - | chr6_1:48663784-48663803 | None:intergenic | 45.0% | |
| TACCGTAAAACCTAACCTCC+TGG | + | chr6_1:48663888-48663907 | Msa0887380:intron | 45.0% | |
| ACCGTAAAACCTAACCTCCT+GGG | + | chr6_1:48663889-48663908 | Msa0887380:intron | 45.0% | |
| ! | ACCCAGGAGGTTAGGTTTTA+CGG | - | chr6_1:48663893-48663912 | None:intergenic | 45.0% |
| AGGAGTCGGACACCTTAATT+TGG | - | chr6_1:48664163-48664182 | None:intergenic | 45.0% | |
| AGGAAGGGATGTATAGGAGT+CGG | - | chr6_1:48664177-48664196 | None:intergenic | 45.0% | |
| TGGAATTGTTCACCTGTGCT+TGG | - | chr6_1:48664521-48664540 | None:intergenic | 45.0% | |
| ! | GCTCCAAAGTGTCATGTGTG+AGG | + | chr6_1:48662687-48662706 | Msa0887380:CDS | 50.0% |
| TCGTCCCTCCTGATCGAATT+CGG | + | chr6_1:48663602-48663621 | Msa0887380:intron | 50.0% | |
| TGAGGGCGACTCAACACATT+AGG | - | chr6_1:48664276-48664295 | None:intergenic | 50.0% | |
| CGCCCTCATTCCATAAACTC+TGG | + | chr6_1:48664288-48664307 | Msa0887380:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 48661277 | 48664608 | 48661277 | ID=Msa0887380;Name=Msa0887380 |
| chr6_1 | mRNA | 48661277 | 48664608 | 48661277 | ID=Msa0887380-mRNA-1;Parent=Msa0887380;Name=Msa0887380-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|0.25|0|5|0|230 |
| chr6_1 | exon | 48661277 | 48661408 | 48661277 | ID=Msa0887380-mRNA-1:exon:10134;Parent=Msa0887380-mRNA-1 |
| chr6_1 | exon | 48661448 | 48661606 | 48661448 | ID=Msa0887380-mRNA-1:exon:10135;Parent=Msa0887380-mRNA-1 |
| chr6_1 | exon | 48662379 | 48662540 | 48662379 | ID=Msa0887380-mRNA-1:exon:10136;Parent=Msa0887380-mRNA-1 |
| chr6_1 | exon | 48662550 | 48662708 | 48662550 | ID=Msa0887380-mRNA-1:exon:10137;Parent=Msa0887380-mRNA-1 |
| chr6_1 | exon | 48664528 | 48664608 | 48664528 | ID=Msa0887380-mRNA-1:exon:10138;Parent=Msa0887380-mRNA-1 |
| chr6_1 | CDS | 48661277 | 48661408 | 48661277 | ID=Msa0887380-mRNA-1:cds;Parent=Msa0887380-mRNA-1 |
| chr6_1 | CDS | 48661448 | 48661606 | 48661448 | ID=Msa0887380-mRNA-1:cds;Parent=Msa0887380-mRNA-1 |
| chr6_1 | CDS | 48662379 | 48662540 | 48662379 | ID=Msa0887380-mRNA-1:cds;Parent=Msa0887380-mRNA-1 |
| chr6_1 | CDS | 48662550 | 48662708 | 48662550 | ID=Msa0887380-mRNA-1:cds;Parent=Msa0887380-mRNA-1 |
| chr6_1 | CDS | 48664528 | 48664608 | 48664528 | ID=Msa0887380-mRNA-1:cds;Parent=Msa0887380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
