Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881740 | XP_024630582.1 | 79.352 | 247 | 26 | 4 | 1 | 230 | 1 | 239 | 3.19e-131 | 379 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881740 | sp|Q9STJ7|BH118_ARATH | 39.759 | 166 | 90 | 4 | 64 | 223 | 1 | 162 | 4.67e-32 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881740 | A0A072TL37 | 79.352 | 247 | 26 | 4 | 1 | 230 | 1 | 239 | 1.52e-131 | 379 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0881740 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0881710 | Msa0881740 | 0.956453 | 2.846866e-114 | -8.615850e-47 |
| Msa0881740 | Msa0887380 | 0.959831 | 7.073872e-118 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881740 | MtrunA17_Chr6g0474671 | 79.352 | 247 | 26 | 4 | 1 | 230 | 1 | 239 | 2.93e-135 | 379 |
| Msa0881740 | MtrunA17_Chr1g0204351 | 50.204 | 245 | 99 | 7 | 5 | 229 | 1 | 242 | 3.57e-64 | 199 |
| Msa0881740 | MtrunA17_Chr1g0204361 | 39.216 | 153 | 82 | 3 | 65 | 207 | 19 | 170 | 1.27e-31 | 114 |
| Msa0881740 | MtrunA17_Chr6g0474681 | 38.764 | 178 | 96 | 4 | 62 | 230 | 3 | 176 | 7.54e-31 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881740 | AT4G25400.1 | 39.766 | 171 | 93 | 4 | 59 | 223 | 19 | 185 | 2.50e-33 | 119 |
| Msa0881740 | AT4G25410.1 | 38.554 | 166 | 89 | 3 | 69 | 221 | 47 | 212 | 1.82e-32 | 117 |
| Msa0881740 | AT5G51780.2 | 40.000 | 175 | 90 | 4 | 61 | 221 | 21 | 194 | 3.15e-31 | 114 |
| Msa0881740 | AT5G51780.1 | 40.116 | 172 | 88 | 4 | 64 | 221 | 1 | 171 | 3.21e-31 | 113 |
| Msa0881740 | AT5G51790.1 | 38.824 | 170 | 89 | 2 | 65 | 221 | 27 | 194 | 1.09e-30 | 112 |
| Msa0881740 | AT4G25400.2 | 42.484 | 153 | 78 | 4 | 59 | 205 | 19 | 167 | 1.52e-30 | 112 |
| Msa0881740 | AT5G51790.3 | 38.824 | 170 | 89 | 2 | 65 | 221 | 92 | 259 | 3.91e-30 | 113 |
| Msa0881740 | AT5G51790.4 | 40.260 | 154 | 77 | 2 | 65 | 205 | 27 | 178 | 5.18e-28 | 105 |
| Msa0881740 | AT5G51790.2 | 40.260 | 154 | 77 | 2 | 65 | 205 | 92 | 243 | 1.91e-27 | 105 |
| Msa0881740 | AT1G62975.1 | 28.700 | 223 | 130 | 4 | 28 | 223 | 39 | 259 | 1.49e-21 | 90.1 |
| Msa0881740 | AT1G62975.2 | 48.235 | 85 | 42 | 1 | 52 | 136 | 63 | 145 | 6.21e-20 | 85.5 |
| Msa0881740 | AT1G12540.1 | 32.105 | 190 | 111 | 4 | 50 | 223 | 62 | 249 | 7.79e-19 | 82.8 |
Find 34 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGAGTTACTAAAATTAT+TGG | 0.157017 | 6_1:-29734567 | Msa0881740:CDS |
| TCATAAAGTAGTTCATTATT+TGG | 0.217906 | 6_1:+29735727 | None:intergenic |
| TTAAATGTTCACCAGAATAA+TGG | 0.283582 | 6_1:-29734641 | Msa0881740:intron |
| ACTAAAATTATTGGCTAAAG+AGG | 0.322448 | 6_1:-29734558 | Msa0881740:CDS |
| GGATCGGAGAGATGCATAAT+AGG | 0.379636 | 6_1:+29735615 | None:intergenic |
| TGTGGGGACTATTAGAAAAC+TGG | 0.390874 | 6_1:+29735848 | None:intergenic |
| ATAGAGAGATTGAGAAGAAA+AGG | 0.391251 | 6_1:-29735654 | Msa0881740:CDS |
| AGTCAATCACATGTGATTGT+AGG | 0.431382 | 6_1:+29732587 | None:intergenic |
| CAAAATAATATCAATAAACT+TGG | 0.435192 | 6_1:-29734740 | Msa0881740:CDS |
| TAACTAGTTCATTGCTGCCT+TGG | 0.465128 | 6_1:+29735872 | None:intergenic |
| TCATTGCTGCCTTGGTGTAA+AGG | 0.472102 | 6_1:+29735880 | None:intergenic |
| CTCAAATTGATCTACAATGT+TGG | 0.473658 | 6_1:+29732637 | None:intergenic |
| AAATAATGAACTACTTTATG+AGG | 0.483202 | 6_1:-29735725 | Msa0881740:CDS |
| TATTATCAAGAATCAGATCA+TGG | 0.493803 | 6_1:+29735806 | None:intergenic |
| AAAACTCGCCAATTCTAAGC+TGG | 0.500520 | 6_1:-29734696 | Msa0881740:CDS |
| GAAGAAAAGGAGGCAAGAAA+TGG | 0.503359 | 6_1:-29735641 | Msa0881740:CDS |
| ATTTACAAGTGGCTTAAAAG+AGG | 0.506030 | 6_1:-29734603 | Msa0881740:CDS |
| ATACCTCACACATGACACTT+TGG | 0.523655 | 6_1:+29734486 | None:intergenic |
| GCTTCCTCTTGAGTTCATCA+AGG | 0.524427 | 6_1:-29735590 | Msa0881740:intron |
| TTGAGAATTGAATTTACAAG+TGG | 0.546189 | 6_1:-29734614 | Msa0881740:CDS |
| CTAAAATTATTGGCTAAAGA+GGG | 0.551865 | 6_1:-29734557 | Msa0881740:CDS |
| CAAGTGGCTTAAAAGAGGAA+AGG | 0.561553 | 6_1:-29734598 | Msa0881740:CDS |
| TGCGTTACAACAGAAATCAA+TGG | 0.564243 | 6_1:-29734518 | Msa0881740:CDS |
| ATAATTCTAATGAACAAATG+AGG | 0.576628 | 6_1:-29735687 | Msa0881740:CDS |
| CATTTAAATTGCATGATGCA+TGG | 0.579018 | 6_1:+29734657 | None:intergenic |
| AATATCTGATCATACGAATG+AGG | 0.579968 | 6_1:-29734786 | Msa0881740:CDS |
| ATTATCAAGAATCAGATCAT+GGG | 0.584403 | 6_1:+29735807 | None:intergenic |
| CTAACCTTGATGAACTCAAG+AGG | 0.593616 | 6_1:+29735586 | None:intergenic |
| GATGAACTCAAGAGGAAGCA+AGG | 0.597305 | 6_1:+29735594 | None:intergenic |
| GAGAGATTGAGAAGAAAAGG+AGG | 0.599248 | 6_1:-29735651 | Msa0881740:CDS |
| ACTCAAGAGGAAGCAAGGAT+CGG | 0.611742 | 6_1:+29735599 | None:intergenic |
| GCCTTGGTGTAAAGGAAACA+TGG | 0.615909 | 6_1:+29735888 | None:intergenic |
| ACCATGTTTCCTTTACACCA+AGG | 0.675993 | 6_1:-29735889 | Msa0881740:CDS |
| GCTCCAAAGTGTCATGTGTG+AGG | 0.704417 | 6_1:-29734489 | Msa0881740:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTCTTTTGAAATTAAT+TGG | - | chr6_1:29732961-29732980 | Msa0881740:intron | 10.0% |
| !!! | TTTTAATTGGAATTTTTATA+AGG | + | chr6_1:29733017-29733036 | None:intergenic | 10.0% |
| !! | ATCAATACATATATATAAAT+AGG | - | chr6_1:29733045-29733064 | Msa0881740:intron | 10.0% |
| !! | TAATATTATGAAATACAAAA+AGG | - | chr6_1:29735539-29735558 | Msa0881740:intron | 10.0% |
| !!! | TTGATTTATCATCTTTTAAT+TGG | + | chr6_1:29733030-29733049 | None:intergenic | 15.0% |
| !! | AGCAAAAAGAAAATTAAAAT+TGG | + | chr6_1:29733401-29733420 | None:intergenic | 15.0% |
| !!! | CTTTTTTTCATATACAAATT+TGG | - | chr6_1:29733463-29733482 | Msa0881740:intron | 15.0% |
| !!! | TTTAGTTTATTTAAATTCGT+CGG | - | chr6_1:29733566-29733585 | Msa0881740:intron | 15.0% |
| !! | CAAATTATTTCAAAAAAATC+TGG | + | chr6_1:29733654-29733673 | None:intergenic | 15.0% |
| !!! | AATTTGCTTAAAATATTTAC+AGG | - | chr6_1:29733668-29733687 | Msa0881740:intron | 15.0% |
| !! | ATTTGCTTAAAATATTTACA+GGG | - | chr6_1:29733669-29733688 | Msa0881740:intron | 15.0% |
| !! | CAAAATAATATCAATAAACT+TGG | - | chr6_1:29733747-29733766 | Msa0881740:intron | 15.0% |
| !! | AAATGTAACTATAATTATTG+TGG | - | chr6_1:29734491-29734510 | Msa0881740:CDS | 15.0% |
| !!! | CAAAGAAAAATGTTTTTTAA+AGG | - | chr6_1:29734779-29734798 | Msa0881740:CDS | 15.0% |
| !! | AGAATAAAATTAGGTTTAAA+GGG | + | chr6_1:29735421-29735440 | None:intergenic | 15.0% |
| !! | AAGAATAAAATTAGGTTTAA+AGG | + | chr6_1:29735422-29735441 | None:intergenic | 15.0% |
| !!! | TAAGTAAACTTACTAAATTT+TGG | + | chr6_1:29735517-29735536 | None:intergenic | 15.0% |
| !!! | ATTAGAATAAATTTTATCCA+TGG | + | chr6_1:29735795-29735814 | None:intergenic | 15.0% |
| !! | TCATAAAGTAGTTCATTATT+TGG | + | chr6_1:29732763-29732782 | None:intergenic | 20.0% |
| !! | AAATAATGAACTACTTTATG+AGG | - | chr6_1:29732762-29732781 | Msa0881740:intron | 20.0% |
| !! | ATAATTCTAATGAACAAATG+AGG | - | chr6_1:29732800-29732819 | Msa0881740:intron | 20.0% |
| !! | TTTATATCACTTATTTCATC+CGG | - | chr6_1:29733440-29733459 | Msa0881740:intron | 20.0% |
| !! | ATTTGTATATGAAAAAAAGC+CGG | + | chr6_1:29733462-29733481 | None:intergenic | 20.0% |
| !!! | ATATACAAATTTGGTTCAAT+CGG | - | chr6_1:29733472-29733491 | Msa0881740:intron | 20.0% |
| !! | TAGTTAATATGAACGTTATT+TGG | + | chr6_1:29733618-29733637 | None:intergenic | 20.0% |
| !! | TTCAGAGTTACTAAAATTAT+TGG | - | chr6_1:29733920-29733939 | Msa0881740:intron | 20.0% |
| !! | GTACTTATATTATGTGATAT+AGG | - | chr6_1:29734463-29734482 | Msa0881740:intron | 20.0% |
| !!! | TTATTGGTTTAAATCATTGT+TGG | - | chr6_1:29734595-29734614 | Msa0881740:CDS | 20.0% |
| !! | ATCATTGATGTAATATATGT+TGG | + | chr6_1:29734820-29734839 | None:intergenic | 20.0% |
| !! | AATAAAATATTAAAACACCC+AGG | + | chr6_1:29735221-29735240 | None:intergenic | 20.0% |
| !!! | TTATTTTTTTGAATGTCTGA+AGG | - | chr6_1:29735236-29735255 | Msa0881740:intron | 20.0% |
| !!! | TATTTTTTTGAATGTCTGAA+GGG | - | chr6_1:29735237-29735256 | Msa0881740:intron | 20.0% |
| !!! | GGTATTTTTTATCATGTTAT+TGG | - | chr6_1:29735258-29735277 | Msa0881740:intron | 20.0% |
| !! | GAATAAAATTAGGTTTAAAG+GGG | + | chr6_1:29735420-29735439 | None:intergenic | 20.0% |
| !! | GGAAGTTAAAGAATAAAATT+AGG | + | chr6_1:29735430-29735449 | None:intergenic | 20.0% |
| ! | ATTATCAAGAATCAGATCAT+GGG | + | chr6_1:29732683-29732702 | None:intergenic | 25.0% |
| ! | TATTATCAAGAATCAGATCA+TGG | + | chr6_1:29732684-29732703 | None:intergenic | 25.0% |
| !! | GGAATTTTTATAAGGAGATT+AGG | + | chr6_1:29733009-29733028 | None:intergenic | 25.0% |
| !! | CTTCTCTCTAATATATTTTG+TGG | - | chr6_1:29733143-29733162 | Msa0881740:intron | 25.0% |
| ! | TTTAATCGGATAAAATCAAC+CGG | + | chr6_1:29733512-29733531 | None:intergenic | 25.0% |
| !! | TACCAGTTAATTGGTTTAAT+CGG | + | chr6_1:29733526-29733545 | None:intergenic | 25.0% |
| ! | TGAACGTTATTTGGATTAAT+CGG | + | chr6_1:29733609-29733628 | None:intergenic | 25.0% |
| !! | ATTATTTTCCAGCTTAGAAT+TGG | + | chr6_1:29733802-29733821 | None:intergenic | 25.0% |
| ! | TTAAATGTTCACCAGAATAA+TGG | - | chr6_1:29733846-29733865 | Msa0881740:intron | 25.0% |
| ! | TTCTCAAAATTCCATTATTC+TGG | + | chr6_1:29733860-29733879 | None:intergenic | 25.0% |
| ! | TTGAGAATTGAATTTACAAG+TGG | - | chr6_1:29733873-29733892 | Msa0881740:intron | 25.0% |
| !! | ACTAAAATTATTGGCTAAAG+AGG | - | chr6_1:29733929-29733948 | Msa0881740:intron | 25.0% |
| !! | CTAAAATTATTGGCTAAAGA+GGG | - | chr6_1:29733930-29733949 | Msa0881740:intron | 25.0% |
| ! | AAACATTGTAGCAAAATTCA+TGG | - | chr6_1:29734044-29734063 | Msa0881740:intron | 25.0% |
| ! | TGTGTTTACATTGTCAAAAT+CGG | - | chr6_1:29734076-29734095 | Msa0881740:intron | 25.0% |
| ! | TATGATCGAACGAAATAAAA+TGG | - | chr6_1:29734188-29734207 | Msa0881740:intron | 25.0% |
| !!! | CTATTGATTTAGATCAAAGA+GGG | - | chr6_1:29734375-29734394 | Msa0881740:intron | 25.0% |
| ! | TCTAATACTCATTCTCTTAT+TGG | - | chr6_1:29734579-29734598 | Msa0881740:CDS | 25.0% |
| ! | AAAATTGAACATACACAAAG+TGG | - | chr6_1:29734629-29734648 | Msa0881740:CDS | 25.0% |
| ! | TTTAGTACTCACTCATTTAT+TGG | + | chr6_1:29734676-29734695 | None:intergenic | 25.0% |
| ! | CTTTATGTACTTCTTTCATA+AGG | - | chr6_1:29734739-29734758 | Msa0881740:CDS | 25.0% |
| !!! | TGTTTTTTAAAGGAGAGTTA+AGG | - | chr6_1:29734789-29734808 | Msa0881740:CDS | 25.0% |
| !!! | AATAAGTTGATTGCATTCAT+TGG | + | chr6_1:29734962-29734981 | None:intergenic | 25.0% |
| ! | ATGAATGCAATCAACTTATT+AGG | - | chr6_1:29734962-29734981 | Msa0881740:intron | 25.0% |
| ! | TGAATGCAATCAACTTATTA+GGG | - | chr6_1:29734963-29734982 | Msa0881740:intron | 25.0% |
| !! | TAGCAATTACTTGATCATTT+TGG | + | chr6_1:29735451-29735470 | None:intergenic | 25.0% |
| ! | AGTAATTGCTATCCAAATTA+AGG | - | chr6_1:29735460-29735479 | Msa0881740:intron | 25.0% |
| !!! | TAAATTTTGGTTAAGAGGAA+GGG | + | chr6_1:29735504-29735523 | None:intergenic | 25.0% |
| !!! | CTTACTAAATTTTGGTTAAG+AGG | + | chr6_1:29735509-29735528 | None:intergenic | 25.0% |
| ! | AGGTCTATTAAATTCTTCTA+AGG | - | chr6_1:29735559-29735578 | Msa0881740:intron | 25.0% |
| ! | GGTCTATTAAATTCTTCTAA+GGG | - | chr6_1:29735560-29735579 | Msa0881740:intron | 25.0% |
| !! | ATATGCTTGATTTTACACAT+AGG | - | chr6_1:29735633-29735652 | Msa0881740:CDS | 25.0% |
| ATAGAGAGATTGAGAAGAAA+AGG | - | chr6_1:29732833-29732852 | Msa0881740:intron | 30.0% | |
| CAAATCATACATATCTCATC+TGG | + | chr6_1:29733093-29733112 | None:intergenic | 30.0% | |
| ! | AGAGTTGCTTTCTATTCATT+TGG | + | chr6_1:29733307-29733326 | None:intergenic | 30.0% |
| ATCCGATTAAACCAATTAAC+TGG | - | chr6_1:29733521-29733540 | Msa0881740:intron | 30.0% | |
| AATATCTGATCATACGAATG+AGG | - | chr6_1:29733701-29733720 | Msa0881740:intron | 30.0% | |
| !!! | TTTTTTGAGTTCATCTCTCT+TGG | + | chr6_1:29733775-29733794 | None:intergenic | 30.0% |
| CATTTAAATTGCATGATGCA+TGG | + | chr6_1:29733833-29733852 | None:intergenic | 30.0% | |
| ATTTACAAGTGGCTTAAAAG+AGG | - | chr6_1:29733884-29733903 | Msa0881740:intron | 30.0% | |
| GTGTTTACATTGTCAAAATC+GGG | - | chr6_1:29734077-29734096 | Msa0881740:intron | 30.0% | |
| TAAAATCGCAATCGAAATCA+AGG | - | chr6_1:29734142-29734161 | Msa0881740:intron | 30.0% | |
| AATGGAAATGATTGAAATCG+AGG | - | chr6_1:29734247-29734266 | Msa0881740:intron | 30.0% | |
| ! | GGTTTTTACACGATTTTGAA+GGG | + | chr6_1:29734306-29734325 | None:intergenic | 30.0% |
| ! | AGGTTTTTACACGATTTTGA+AGG | + | chr6_1:29734307-29734326 | None:intergenic | 30.0% |
| TCGAAAAACATGCAAAATCA+TGG | + | chr6_1:29734350-29734369 | None:intergenic | 30.0% | |
| !! | GCTATTGATTTAGATCAAAG+AGG | - | chr6_1:29734374-29734393 | Msa0881740:intron | 30.0% |
| TAACATTACTCAAGTCACAA+AGG | + | chr6_1:29734534-29734553 | None:intergenic | 30.0% | |
| AAGAGAATGAGTATTAGAGA+GGG | + | chr6_1:29734577-29734596 | None:intergenic | 30.0% | |
| TAAGAGAATGAGTATTAGAG+AGG | + | chr6_1:29734578-29734597 | None:intergenic | 30.0% | |
| ! | GATTAGATTCCTAACCTTTT+GGG | + | chr6_1:29734863-29734882 | None:intergenic | 30.0% |
| ! | AGATTAGATTCCTAACCTTT+TGG | + | chr6_1:29734864-29734883 | None:intergenic | 30.0% |
| GAATGCAATCAACTTATTAG+GGG | - | chr6_1:29734964-29734983 | Msa0881740:intron | 30.0% | |
| AAAATATTAAAACACCCAGG+AGG | + | chr6_1:29735218-29735237 | None:intergenic | 30.0% | |
| ! | GATTAGTCACTACTAAAATG+TGG | + | chr6_1:29735297-29735316 | None:intergenic | 30.0% |
| ! | ATATCCAACATGTTGTTTGA+CGG | + | chr6_1:29735321-29735340 | None:intergenic | 30.0% |
| AACAACATGTTGGATATGTA+AGG | - | chr6_1:29735324-29735343 | Msa0881740:intron | 30.0% | |
| !!! | CTAAATTTTGGTTAAGAGGA+AGG | + | chr6_1:29735505-29735524 | None:intergenic | 30.0% |
| ACATTACATTTCATGAGTCA+TGG | - | chr6_1:29735691-29735710 | Msa0881740:CDS | 30.0% | |
| ! | TGTTAAGCAATCTAAAACCA+TGG | - | chr6_1:29735775-29735794 | Msa0881740:intron | 30.0% |
| CTCAAATTGATCTACAATGT+TGG | + | chr6_1:29735853-29735872 | None:intergenic | 30.0% | |
| !! | ATTTTGTGTTGGTGTTTGTG+GGG | + | chr6_1:29732658-29732677 | None:intergenic | 35.0% |
| !! | GATTTTGTGTTGGTGTTTGT+GGG | + | chr6_1:29732659-29732678 | None:intergenic | 35.0% |
| !! | AGATTTTGTGTTGGTGTTTG+TGG | + | chr6_1:29732660-29732679 | None:intergenic | 35.0% |
| TGGTACCTACTTCACTATAT+AGG | - | chr6_1:29732981-29733000 | Msa0881740:intron | 35.0% | |
| AGGATCCTATATAGTGAAGT+AGG | + | chr6_1:29732989-29733008 | None:intergenic | 35.0% | |
| !!! | ATCGGAAACTGTTACTTTTC+CGG | - | chr6_1:29733490-29733509 | Msa0881740:intron | 35.0% |
| AATTAACTGGTACGTTCGTT+CGG | - | chr6_1:29733534-29733553 | Msa0881740:intron | 35.0% | |
| TGCGTTACAACAGAAATCAA+TGG | - | chr6_1:29733969-29733988 | Msa0881740:intron | 35.0% | |
| AAGATGTCGATGACATATGA+TGG | - | chr6_1:29734218-29734237 | Msa0881740:intron | 35.0% | |
| ! | GACATATGATGGTAACGAAA+TGG | - | chr6_1:29734229-29734248 | Msa0881740:intron | 35.0% |
| !! | TACACGATTTTGAAGGGTTT+CGG | + | chr6_1:29734300-29734319 | None:intergenic | 35.0% |
| !! | GATCTCGATTTTGACAACAA+TGG | - | chr6_1:29734422-29734441 | Msa0881740:intron | 35.0% |
| ATTGAACATACACAAAGTGG+TGG | - | chr6_1:29734632-29734651 | Msa0881740:intron | 35.0% | |
| TTGAACATACACAAAGTGGT+GGG | - | chr6_1:29734633-29734652 | Msa0881740:intron | 35.0% | |
| AAGTACATAAAGTCAAGTCG+AGG | + | chr6_1:29734731-29734750 | None:intergenic | 35.0% | |
| ! | TGATTTGCAAAGATCCCAAA+AGG | - | chr6_1:29734846-29734865 | Msa0881740:intron | 35.0% |
| GTTGATTGCATTCATTGGTA+GGG | + | chr6_1:29734957-29734976 | None:intergenic | 35.0% | |
| AGTTGATTGCATTCATTGGT+AGG | + | chr6_1:29734958-29734977 | None:intergenic | 35.0% | |
| TAGTCACTACTAAAATGTGG+CGG | + | chr6_1:29735294-29735313 | None:intergenic | 35.0% | |
| AACATGTTGGATATGTAAGG+TGG | - | chr6_1:29735327-29735346 | Msa0881740:intron | 35.0% | |
| ACATGTTGGATATGTAAGGT+GGG | - | chr6_1:29735328-29735347 | Msa0881740:intron | 35.0% | |
| TCCAGAAAATATGGTTGGAT+GGG | + | chr6_1:29735359-29735378 | None:intergenic | 35.0% | |
| ATCCAGAAAATATGGTTGGA+TGG | + | chr6_1:29735360-29735379 | None:intergenic | 35.0% | |
| ! | TCCAACCATATTTTCTGGAT+AGG | - | chr6_1:29735360-29735379 | Msa0881740:intron | 35.0% |
| TGTTGCCTATCCAGAAAATA+TGG | + | chr6_1:29735368-29735387 | None:intergenic | 35.0% | |
| AACCAGAGTTTATGGAATGA+GGG | + | chr6_1:29735605-29735624 | None:intergenic | 35.0% | |
| TAACCAGAGTTTATGGAATG+AGG | + | chr6_1:29735606-29735625 | None:intergenic | 35.0% | |
| GCATGTATAACCAGAGTTTA+TGG | + | chr6_1:29735613-29735632 | None:intergenic | 35.0% | |
| CAAGGGATGAGTTAAATCAT+AGG | + | chr6_1:29735727-29735746 | None:intergenic | 35.0% | |
| ACAAGACTTGTAAGTCTCAA+GGG | + | chr6_1:29735744-29735763 | None:intergenic | 35.0% | |
| TACAAGACTTGTAAGTCTCA+AGG | + | chr6_1:29735745-29735764 | None:intergenic | 35.0% | |
| ACCATGTTTCCTTTACACCA+AGG | - | chr6_1:29732598-29732617 | Msa0881740:CDS | 40.0% | |
| TAACTAGTTCATTGCTGCCT+TGG | + | chr6_1:29732618-29732637 | None:intergenic | 40.0% | |
| TGTGGGGACTATTAGAAAAC+TGG | + | chr6_1:29732642-29732661 | None:intergenic | 40.0% | |
| ! | GATCATGGGAGATTTTGTGT+TGG | + | chr6_1:29732669-29732688 | None:intergenic | 40.0% |
| GAGAGATTGAGAAGAAAAGG+AGG | - | chr6_1:29732836-29732855 | Msa0881740:intron | 40.0% | |
| GAAGAAAAGGAGGCAAGAAA+TGG | - | chr6_1:29732846-29732865 | Msa0881740:intron | 40.0% | |
| CTAACCTTGATGAACTCAAG+AGG | + | chr6_1:29732904-29732923 | None:intergenic | 40.0% | |
| GAACGAACGTACCAGTTAAT+TGG | + | chr6_1:29733535-29733554 | None:intergenic | 40.0% | |
| AAAACTCGCCAATTCTAAGC+TGG | - | chr6_1:29733791-29733810 | Msa0881740:intron | 40.0% | |
| CAAGTGGCTTAAAAGAGGAA+AGG | - | chr6_1:29733889-29733908 | Msa0881740:intron | 40.0% | |
| ATACCTCACACATGACACTT+TGG | + | chr6_1:29734004-29734023 | None:intergenic | 40.0% | |
| !! | ACACGATTTTGAAGGGTTTC+GGG | + | chr6_1:29734299-29734318 | None:intergenic | 40.0% |
| GCAAAATCATGGTATGATCG+CGG | + | chr6_1:29734339-29734358 | None:intergenic | 40.0% | |
| TGCAAAGATCCCAAAAGGTT+AGG | - | chr6_1:29734851-29734870 | Msa0881740:intron | 40.0% | |
| AGGAGGGACGAATGAAATTT+GGG | + | chr6_1:29734904-29734923 | None:intergenic | 40.0% | |
| AATTCAGCTAATCTCGTGAG+AGG | - | chr6_1:29735168-29735187 | Msa0881740:intron | 40.0% | |
| ATTAAAACACCCAGGAGGTT+AGG | + | chr6_1:29735213-29735232 | None:intergenic | 40.0% | |
| ATCACCGTCAAACAACATGT+TGG | - | chr6_1:29735314-29735333 | Msa0881740:intron | 40.0% | |
| ! | ACCCATCCAACCATATTTTC+TGG | - | chr6_1:29735355-29735374 | Msa0881740:intron | 40.0% |
| GCCTATCCAGAAAATATGGT+TGG | + | chr6_1:29735364-29735383 | None:intergenic | 40.0% | |
| GTTAAGAGGAAGGGATGTAT+AGG | + | chr6_1:29735495-29735514 | None:intergenic | 40.0% | |
| !!! | TCTTTGTTTTCACCAAGCAC+AGG | - | chr6_1:29735818-29735837 | Msa0881740:CDS | 40.0% |
| ! | GCCTTGGTGTAAAGGAAACA+TGG | + | chr6_1:29732602-29732621 | None:intergenic | 45.0% |
| ! | TCATTGCTGCCTTGGTGTAA+AGG | + | chr6_1:29732610-29732629 | None:intergenic | 45.0% |
| GGATCGGAGAGATGCATAAT+AGG | + | chr6_1:29732875-29732894 | None:intergenic | 45.0% | |
| ACTCAAGAGGAAGCAAGGAT+CGG | + | chr6_1:29732891-29732910 | None:intergenic | 45.0% | |
| GATGAACTCAAGAGGAAGCA+AGG | + | chr6_1:29732896-29732915 | None:intergenic | 45.0% | |
| GCTTCCTCTTGAGTTCATCA+AGG | - | chr6_1:29732897-29732916 | Msa0881740:intron | 45.0% | |
| TATGATCGCGGCAAAATCGT+AGG | + | chr6_1:29734327-29734346 | None:intergenic | 45.0% | |
| CAGGAGGGACGAATGAAATT+TGG | + | chr6_1:29734905-29734924 | None:intergenic | 45.0% | |
| CAATCCGAATTCGATCAGGA+GGG | + | chr6_1:29734920-29734939 | None:intergenic | 45.0% | |
| ACAATCCGAATTCGATCAGG+AGG | + | chr6_1:29734921-29734940 | None:intergenic | 45.0% | |
| CGTACAATCCGAATTCGATC+AGG | + | chr6_1:29734924-29734943 | None:intergenic | 45.0% | |
| CGTCGTTTGATTGAGCTCAA+AGG | + | chr6_1:29735096-29735115 | None:intergenic | 45.0% | |
| TACCGTAAAACCTAACCTCC+TGG | - | chr6_1:29735200-29735219 | Msa0881740:intron | 45.0% | |
| ACCGTAAAACCTAACCTCCT+GGG | - | chr6_1:29735201-29735220 | Msa0881740:intron | 45.0% | |
| ! | ACCCAGGAGGTTAGGTTTTA+CGG | + | chr6_1:29735205-29735224 | None:intergenic | 45.0% |
| AGGAGTCGGACACCTTAATT+TGG | + | chr6_1:29735475-29735494 | None:intergenic | 45.0% | |
| AGGAAGGGATGTATAGGAGT+CGG | + | chr6_1:29735489-29735508 | None:intergenic | 45.0% | |
| TGGAATTGTTCACCTGTGCT+TGG | + | chr6_1:29735833-29735852 | None:intergenic | 45.0% | |
| ! | GCTCCAAAGTGTCATGTGTG+AGG | - | chr6_1:29733998-29734017 | Msa0881740:intron | 50.0% |
| TCGTCCCTCCTGATCGAATT+CGG | - | chr6_1:29734913-29734932 | Msa0881740:intron | 50.0% | |
| TGAGGGCGACTCAACACATT+AGG | + | chr6_1:29735588-29735607 | None:intergenic | 50.0% | |
| CGCCCTCATTCCATAAACTC+TGG | - | chr6_1:29735600-29735619 | Msa0881740:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 29732589 | 29735920 | 29732589 | ID=Msa0881740;Name=Msa0881740 |
| chr6_1 | mRNA | 29732589 | 29735920 | 29732589 | ID=Msa0881740-mRNA-1;Parent=Msa0881740;Name=Msa0881740-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|0.25|0.2|5|0|230 |
| chr6_1 | exon | 29735789 | 29735920 | 29735789 | ID=Msa0881740-mRNA-1:exon:7437;Parent=Msa0881740-mRNA-1 |
| chr6_1 | exon | 29735591 | 29735749 | 29735591 | ID=Msa0881740-mRNA-1:exon:7436;Parent=Msa0881740-mRNA-1 |
| chr6_1 | exon | 29734658 | 29734819 | 29734658 | ID=Msa0881740-mRNA-1:exon:7435;Parent=Msa0881740-mRNA-1 |
| chr6_1 | exon | 29734490 | 29734648 | 29734490 | ID=Msa0881740-mRNA-1:exon:7434;Parent=Msa0881740-mRNA-1 |
| chr6_1 | exon | 29732589 | 29732669 | 29732589 | ID=Msa0881740-mRNA-1:exon:7433;Parent=Msa0881740-mRNA-1 |
| chr6_1 | CDS | 29735789 | 29735920 | 29735789 | ID=Msa0881740-mRNA-1:cds;Parent=Msa0881740-mRNA-1 |
| chr6_1 | CDS | 29735591 | 29735749 | 29735591 | ID=Msa0881740-mRNA-1:cds;Parent=Msa0881740-mRNA-1 |
| chr6_1 | CDS | 29734658 | 29734819 | 29734658 | ID=Msa0881740-mRNA-1:cds;Parent=Msa0881740-mRNA-1 |
| chr6_1 | CDS | 29734490 | 29734648 | 29734490 | ID=Msa0881740-mRNA-1:cds;Parent=Msa0881740-mRNA-1 |
| chr6_1 | CDS | 29732589 | 29732669 | 29732589 | ID=Msa0881740-mRNA-1:cds;Parent=Msa0881740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
