Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0881820 | Msa1335780 | 0.828668 | 7.909173e-55 | -8.615850e-47 |
| Msa0881820 | Msa1414750 | 0.818614 | 1.788433e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881820 | MtrunA17_Chr4g0005581 | 46.591 | 88 | 15 | 1 | 208 | 263 | 132 | 219 | 1.12e-14 | 72.0 |
| Msa0881820 | MtrunA17_Chr2g0285731 | 67.500 | 40 | 11 | 1 | 185 | 222 | 231 | 270 | 1.56e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 71 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTTGATCATGCAGAAAA+AGG | 0.261240 | 6_1:+30128700 | Msa0881820:CDS |
| TTCATATCCTAGTTTCCTAA+TGG | 0.328294 | 6_1:-30128529 | None:intergenic |
| TTTCTTGGATGAATCCCATT+AGG | 0.375505 | 6_1:+30128514 | Msa0881820:CDS |
| TCATATCCTAGTTTCCTAAT+GGG | 0.382963 | 6_1:-30128528 | None:intergenic |
| TACTGACAGAGAAAGATATA+TGG | 0.394972 | 6_1:+30128556 | Msa0881820:CDS |
| TCTGAGGGAGGGCTCACAAT+AGG | 0.396058 | 6_1:-30128679 | None:intergenic |
| TGATCGATCGCATCCTTCTC+TGG | 0.398400 | 6_1:+30127702 | Msa0881820:CDS |
| TACAACAATGCTTGAGCGAC+TGG | 0.422475 | 6_1:-30126942 | None:intergenic |
| CTGAGGGAGGGCTCACAATA+GGG | 0.446437 | 6_1:-30128678 | None:intergenic |
| CGGAGGAGGATGGGATTGTT+CGG | 0.458337 | 6_1:-30127829 | None:intergenic |
| CACAGAAGGATGCAATTGAT+TGG | 0.459481 | 6_1:-30127732 | None:intergenic |
| GATTAGAAAGAGTTTGAAGA+AGG | 0.465045 | 6_1:-30126910 | None:intergenic |
| TCCTCCTCTGTCTCTAGCTC+CGG | 0.487582 | 6_1:+30127592 | Msa0881820:CDS |
| CAGAGGATGATGCGTTCAAT+CGG | 0.488458 | 6_1:-30127637 | None:intergenic |
| AGATGCATGGGAGCGTGCAC+AGG | 0.491951 | 6_1:+30128584 | Msa0881820:CDS |
| CGATCGAAGACGGAGGAGGA+TGG | 0.494681 | 6_1:-30127839 | None:intergenic |
| GATCGAAGACGGAGGAGGAT+GGG | 0.495042 | 6_1:-30127838 | None:intergenic |
| ATGAATCCCATTAGGAAACT+AGG | 0.498063 | 6_1:+30128522 | Msa0881820:CDS |
| CGGAAGAGGATGCGATCGAC+CGG | 0.501705 | 6_1:-30127788 | None:intergenic |
| CAATCAATTGCATCCTTCTG+TGG | 0.506783 | 6_1:+30127733 | Msa0881820:CDS |
| GATCTGCACCGGTGGATCTC+CGG | 0.510670 | 6_1:+30127769 | Msa0881820:CDS |
| TGAATTGCGATCGGAGACTC+AGG | 0.511952 | 6_1:-30127868 | None:intergenic |
| GGATTGACGGTGGGATTGAT+CGG | 0.513774 | 6_1:-30127663 | None:intergenic |
| TCCCACCGTCAATCCTTCTC+CGG | 0.517008 | 6_1:+30127671 | Msa0881820:CDS |
| CTCCGATCGATCTGCACCGG+TGG | 0.526259 | 6_1:+30127761 | Msa0881820:CDS |
| GAGGATACGTCGATCGGAGA+TGG | 0.528014 | 6_1:-30127574 | None:intergenic |
| TGAGAAGTTTCGATCGGAAG+AGG | 0.531346 | 6_1:-30127802 | None:intergenic |
| ATCCACCGGAGAAGGATTGA+CGG | 0.532528 | 6_1:-30127676 | None:intergenic |
| TTCTGCATGATCAAATTCTG+AGG | 0.542218 | 6_1:-30128695 | None:intergenic |
| GATACGTCGATCGGAGATGG+TGG | 0.543439 | 6_1:-30127571 | None:intergenic |
| CAGGAGGATGCGATCGAAGA+CGG | 0.543505 | 6_1:-30127849 | None:intergenic |
| TCCTCTGTCTCTAGCTCCGG+TGG | 0.547712 | 6_1:+30127595 | Msa0881820:CDS |
| ATCCACCGGTGCAGATCGAT+CGG | 0.548666 | 6_1:-30127763 | None:intergenic |
| GCGATCGACCGGAGATCCAC+CGG | 0.553995 | 6_1:-30127777 | None:intergenic |
| CGGAGGAGATAGAGATCCAC+CGG | 0.554678 | 6_1:-30127611 | None:intergenic |
| TATATGGAAATTAGATGCAT+GGG | 0.556279 | 6_1:+30128572 | Msa0881820:CDS |
| ATCGGAGATGGTGGAAGAAG+AGG | 0.564298 | 6_1:-30127562 | None:intergenic |
| CACCGTCAATCCTTCTCCGG+TGG | 0.564362 | 6_1:+30127674 | Msa0881820:CDS |
| AGGTCGCACGGAGGAAGTGA+TGG | 0.566882 | 6_1:-30127542 | None:intergenic |
| ATATATGGAAATTAGATGCA+TGG | 0.568066 | 6_1:+30128571 | Msa0881820:CDS |
| TCTGCATGATCAAATTCTGA+GGG | 0.577376 | 6_1:-30128694 | None:intergenic |
| GATGCGATCGAAGACGGAGG+AGG | 0.577401 | 6_1:-30127843 | None:intergenic |
| GATCAGAGATCCACCGGAGA+AGG | 0.580807 | 6_1:-30127684 | None:intergenic |
| GATTGGAGATCCACCAGAGA+AGG | 0.584214 | 6_1:-30127715 | None:intergenic |
| TCAATTGCATCCTTCTGTGG+TGG | 0.586544 | 6_1:+30127736 | Msa0881820:CDS |
| GAAAGAATAGACCGGCATGA+AGG | 0.588436 | 6_1:-30126885 | None:intergenic |
| GCGATCGATCAGAGATCCAC+CGG | 0.596820 | 6_1:-30127690 | None:intergenic |
| AGAAGGATGAAAGAATAGAC+CGG | 0.601221 | 6_1:-30126893 | None:intergenic |
| ACAGAGGAGGATACGTCGAT+CGG | 0.603335 | 6_1:-30127580 | None:intergenic |
| CATGATCAAATTCTGAGGGA+GGG | 0.603900 | 6_1:-30128690 | None:intergenic |
| GATCGGAGATCCACCACAGA+AGG | 0.606659 | 6_1:-30127746 | None:intergenic |
| ATCGCTGATTGAATTGCGAT+CGG | 0.608099 | 6_1:-30127877 | None:intergenic |
| GCATGATCAAATTCTGAGGG+AGG | 0.609988 | 6_1:-30128691 | None:intergenic |
| TGGTGGAAGAAGAGGTCGCA+CGG | 0.614853 | 6_1:-30127554 | None:intergenic |
| TCGATCGCATCCTTCTCTGG+TGG | 0.615577 | 6_1:+30127705 | Msa0881820:CDS |
| GGAGACTGAGAAGTTTCGAT+CGG | 0.619418 | 6_1:-30127808 | None:intergenic |
| GATCTCCGATCGATCTGCAC+CGG | 0.620752 | 6_1:+30127758 | Msa0881820:CDS |
| TGATTTGTTTAGAACAATCG+AGG | 0.626917 | 6_1:+30128637 | Msa0881820:intron |
| ACCGGAGAAGGATTGACGGT+GGG | 0.628295 | 6_1:-30127672 | None:intergenic |
| TCGCACGGAGGAAGTGATGG+TGG | 0.631136 | 6_1:-30127539 | None:intergenic |
| ATGATGCGTTCAATCGGAGA+CGG | 0.638702 | 6_1:-30127631 | None:intergenic |
| TCCACCGGAGCTAGAGACAG+AGG | 0.651482 | 6_1:-30127596 | None:intergenic |
| ATGCGTTCAATCGGAGACGG+AGG | 0.652092 | 6_1:-30127628 | None:intergenic |
| GAACAATCGAGGTGGAAGAG+TGG | 0.652180 | 6_1:+30128648 | Msa0881820:intron |
| GTGGGATTGATCGGAGACAG+AGG | 0.653542 | 6_1:-30127654 | None:intergenic |
| CACCGGAGAAGGATTGACGG+TGG | 0.654764 | 6_1:-30127673 | None:intergenic |
| ACCGGAGCTAGAGACAGAGG+AGG | 0.671704 | 6_1:-30127593 | None:intergenic |
| ATTGCGATCGGAGACTCAGG+AGG | 0.681339 | 6_1:-30127865 | None:intergenic |
| TTTGTTTAGAACAATCGAGG+TGG | 0.691243 | 6_1:+30128640 | Msa0881820:intron |
| GAGGATGCGATCGAAGACGG+AGG | 0.719740 | 6_1:-30127846 | None:intergenic |
| TGGAAGAAGAGGTCGCACGG+AGG | 0.797353 | 6_1:-30127551 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAACAAATATTTTTTTTGA+AGG | + | chr6_1:30127437-30127456 | Msa0881820:intron | 10.0% |
| !! | ATAATTAACAAAAAGATTAA+AGG | - | chr6_1:30128071-30128090 | None:intergenic | 10.0% |
| !!! | ATTTTCAATTTGAAAAATTA+AGG | - | chr6_1:30129224-30129243 | None:intergenic | 10.0% |
| !!! | TCTGTGTTTATTTTTTTTTT+AGG | + | chr6_1:30127034-30127053 | Msa0881820:intron | 15.0% |
| !! | AATAATTAAATATTCAGCAA+TGG | + | chr6_1:30128175-30128194 | Msa0881820:intron | 15.0% |
| !! | TGATAAGATATCATTATTTA+TGG | + | chr6_1:30128376-30128395 | Msa0881820:intron | 15.0% |
| !! | AACAAAACAAAAAACAAAAA+AGG | - | chr6_1:30128926-30128945 | None:intergenic | 15.0% |
| !! | TTAAAAAGAGAAAAACAATT+TGG | + | chr6_1:30129316-30129335 | Msa0881820:intron | 15.0% |
| !! | TAAAAAGAGAAAAACAATTT+GGG | + | chr6_1:30129317-30129336 | Msa0881820:intron | 15.0% |
| !! | TTGTAAAATCTAGCATAATT+AGG | + | chr6_1:30127994-30128013 | Msa0881820:intron | 20.0% |
| !! | AAGATATCATTATTTATGGA+TGG | + | chr6_1:30128380-30128399 | Msa0881820:intron | 20.0% |
| !! | ATATGATAAATCAAAACAGA+GGG | - | chr6_1:30128780-30128799 | None:intergenic | 20.0% |
| !! | AATATGATAAATCAAAACAG+AGG | - | chr6_1:30128781-30128800 | None:intergenic | 20.0% |
| !!! | TGGTAATAGTTTTAAGAATA+TGG | + | chr6_1:30128846-30128865 | Msa0881820:intron | 20.0% |
| !! | ATATACATATTGAGATCAAA+TGG | + | chr6_1:30129084-30129103 | Msa0881820:intron | 20.0% |
| !! | TTATGTTTCACGAATATAAT+AGG | + | chr6_1:30129123-30129142 | Msa0881820:intron | 20.0% |
| !!! | AAATCATTTTTCTGTATACT+TGG | + | chr6_1:30129246-30129265 | Msa0881820:intron | 20.0% |
| !!! | GTTTTTCTCTTTTTAAGTTT+AGG | - | chr6_1:30129312-30129331 | None:intergenic | 20.0% |
| !!! | TTTTTATGACTCTATCATTA+AGG | + | chr6_1:30129368-30129387 | Msa0881820:intron | 20.0% |
| ! | CAAGTTCTTTCAATTAACTA+CGG | + | chr6_1:30127117-30127136 | Msa0881820:intron | 25.0% |
| !! | ATGCTACCAAATTTTTGATA+CGG | + | chr6_1:30127334-30127353 | Msa0881820:intron | 25.0% |
| ! | TACAATCCGTATCAAAAATT+TGG | - | chr6_1:30127343-30127362 | None:intergenic | 25.0% |
| !!! | TATTTTTGTTATTTGGTCTC+TGG | + | chr6_1:30128208-30128227 | Msa0881820:intron | 25.0% |
| ! | ACATGTAGTAACTTTGTTAA+TGG | + | chr6_1:30128236-30128255 | Msa0881820:intron | 25.0% |
| ! | TAGCATACAATTTCATTTGA+AGG | + | chr6_1:30128338-30128357 | Msa0881820:intron | 25.0% |
| ! | AGCATACAATTTCATTTGAA+GGG | + | chr6_1:30128339-30128358 | Msa0881820:intron | 25.0% |
| ! | ATTATTTATGGATGGTTAAC+AGG | + | chr6_1:30128388-30128407 | Msa0881820:intron | 25.0% |
| ! | ATATATGGAAATTAGATGCA+TGG | + | chr6_1:30128571-30128590 | Msa0881820:CDS | 25.0% |
| ! | TATATGGAAATTAGATGCAT+GGG | + | chr6_1:30128572-30128591 | Msa0881820:CDS | 25.0% |
| ! | AATTTGATCATGCAGAAAAA+GGG | + | chr6_1:30128701-30128720 | Msa0881820:CDS | 25.0% |
| ! | TTATTGCATGAGAAAAAACA+GGG | - | chr6_1:30129047-30129066 | None:intergenic | 25.0% |
| ! | TTTATTGCATGAGAAAAAAC+AGG | - | chr6_1:30129048-30129067 | None:intergenic | 25.0% |
| ! | TGATCTCAATATGTATATAC+AGG | - | chr6_1:30129082-30129101 | None:intergenic | 25.0% |
| !! | TTGGAGTAGAAGAAATATTT+TGG | + | chr6_1:30129265-30129284 | Msa0881820:intron | 25.0% |
| ! | AGTTTAGGCATAAATATTCA+TGG | - | chr6_1:30129297-30129316 | None:intergenic | 25.0% |
| !! | TAAGGTTTTTGATATCTCTA+CGG | + | chr6_1:30129386-30129405 | Msa0881820:intron | 25.0% |
| !!! | GTAGATGTTTTTAGATTACT+TGG | + | chr6_1:30129443-30129462 | Msa0881820:intron | 25.0% |
| !!! | ATTGTTTTTATCCTTCATGC+CGG | + | chr6_1:30126874-30126893 | Msa0881820:CDS | 30.0% |
| GATTAGAAAGAGTTTGAAGA+AGG | - | chr6_1:30126913-30126932 | None:intergenic | 30.0% | |
| CTTACTCTATAAGAAGTTCA+AGG | + | chr6_1:30127167-30127186 | Msa0881820:intron | 30.0% | |
| !!! | GTAGCAAACTACTAGTTTTT+TGG | + | chr6_1:30127366-30127385 | Msa0881820:intron | 30.0% |
| TGATCTGTATGAAATTGAAG+TGG | + | chr6_1:30128108-30128127 | Msa0881820:intron | 30.0% | |
| GTATGAAATTGAAGTGGTTA+TGG | + | chr6_1:30128114-30128133 | Msa0881820:intron | 30.0% | |
| ! | TTTGTGATCACCAATTTTGA+CGG | + | chr6_1:30128412-30128431 | Msa0881820:intron | 30.0% |
| TGAAATGATACCGTCAAAAT+TGG | - | chr6_1:30128425-30128444 | None:intergenic | 30.0% | |
| ATAGTGTATGGATGGTTAAT+AGG | + | chr6_1:30128460-30128479 | Msa0881820:intron | 30.0% | |
| !!! | TAGGTTTTGATTTGTTCCTT+TGG | + | chr6_1:30128479-30128498 | Msa0881820:intron | 30.0% |
| TCATATCCTAGTTTCCTAAT+GGG | - | chr6_1:30128531-30128550 | None:intergenic | 30.0% | |
| TTCATATCCTAGTTTCCTAA+TGG | - | chr6_1:30128532-30128551 | None:intergenic | 30.0% | |
| TACTGACAGAGAAAGATATA+TGG | + | chr6_1:30128556-30128575 | Msa0881820:CDS | 30.0% | |
| !! | TGATTTGTTTAGAACAATCG+AGG | + | chr6_1:30128637-30128656 | Msa0881820:intron | 30.0% |
| GAATTTGATCATGCAGAAAA+AGG | + | chr6_1:30128700-30128719 | Msa0881820:CDS | 30.0% | |
| ATTTGATCATGCAGAAAAAG+GGG | + | chr6_1:30128702-30128721 | Msa0881820:CDS | 30.0% | |
| AAACAGAGGGAAAAAAAACA+AGG | - | chr6_1:30128767-30128786 | None:intergenic | 30.0% | |
| ! | CACATGTATGTAAATTTTGC+TGG | + | chr6_1:30128826-30128845 | Msa0881820:intron | 30.0% |
| !!! | TTTTTGTTTTGTTTCAGCCA+TGG | + | chr6_1:30128933-30128952 | Msa0881820:intron | 30.0% |
| TGTTTCACGAATATAATAGG+TGG | + | chr6_1:30129126-30129145 | Msa0881820:intron | 30.0% | |
| TCGTAACAATGATCCTTAAT+TGG | + | chr6_1:30129153-30129172 | Msa0881820:intron | 30.0% | |
| AGAAGGATGAAAGAATAGAC+CGG | - | chr6_1:30126896-30126915 | None:intergenic | 35.0% | |
| ! | AAGTTCAAGGAAGTTTGCTT+CGG | + | chr6_1:30127180-30127199 | Msa0881820:intron | 35.0% |
| AGTGGTTATGGAAGTTGAAT+TGG | + | chr6_1:30128126-30128145 | Msa0881820:intron | 35.0% | |
| ATCTGTTCGTTCATAGTGTA+TGG | + | chr6_1:30128448-30128467 | Msa0881820:intron | 35.0% | |
| !!! | TTTTGATTTGTTCCTTTGGC+AGG | + | chr6_1:30128483-30128502 | Msa0881820:intron | 35.0% |
| !! | TTTGATTTGTTCCTTTGGCA+GGG | + | chr6_1:30128484-30128503 | Msa0881820:intron | 35.0% |
| TTTCTTGGATGAATCCCATT+AGG | + | chr6_1:30128514-30128533 | Msa0881820:CDS | 35.0% | |
| ATGAATCCCATTAGGAAACT+AGG | + | chr6_1:30128522-30128541 | Msa0881820:CDS | 35.0% | |
| ! | TTTGTTTAGAACAATCGAGG+TGG | + | chr6_1:30128640-30128659 | Msa0881820:intron | 35.0% |
| TCTGCATGATCAAATTCTGA+GGG | - | chr6_1:30128697-30128716 | None:intergenic | 35.0% | |
| TTCTGCATGATCAAATTCTG+AGG | - | chr6_1:30128698-30128717 | None:intergenic | 35.0% | |
| AACAAGGCAAATGAAAACAG+AGG | - | chr6_1:30128751-30128770 | None:intergenic | 35.0% | |
| !! | TTTTGTTTCAGCCATGGAAT+TGG | + | chr6_1:30128939-30128958 | Msa0881820:intron | 35.0% |
| TGTCTCTTTCTCTCTGTATT+TGG | + | chr6_1:30129014-30129033 | Msa0881820:intron | 35.0% | |
| !! | GTTGTTTTATGCATGCTCGT+TGG | + | chr6_1:30127090-30127109 | Msa0881820:intron | 40.0% |
| ! | AGTTCAAGGAAGTTTGCTTC+GGG | + | chr6_1:30127181-30127200 | Msa0881820:intron | 40.0% |
| CACAGAAGGATGCAATTGAT+TGG | - | chr6_1:30127735-30127754 | None:intergenic | 40.0% | |
| CAATCAATTGCATCCTTCTG+TGG | + | chr6_1:30127733-30127752 | Msa0881820:CDS | 40.0% | |
| ! | ATCGCTGATTGAATTGCGAT+CGG | - | chr6_1:30127880-30127899 | None:intergenic | 40.0% |
| GTTCGTTCATAGTGTATGGA+TGG | + | chr6_1:30128452-30128471 | Msa0881820:intron | 40.0% | |
| GAAAAAACTATCCCTGCCAA+AGG | - | chr6_1:30128498-30128517 | None:intergenic | 40.0% | |
| !!! | TGGCAGGGATAGTTTTTTCT+TGG | + | chr6_1:30128499-30128518 | Msa0881820:intron | 40.0% |
| ! | CATGATCAAATTCTGAGGGA+GGG | - | chr6_1:30128693-30128712 | None:intergenic | 40.0% |
| GAAAAAGGGGATGCATTGTA+TGG | + | chr6_1:30128715-30128734 | Msa0881820:CDS | 40.0% | |
| TCGATGAAGTCTGCCAATTA+AGG | - | chr6_1:30129169-30129188 | None:intergenic | 40.0% | |
| GAAAGAATAGACCGGCATGA+AGG | - | chr6_1:30126888-30126907 | None:intergenic | 45.0% | |
| TACAACAATGCTTGAGCGAC+TGG | - | chr6_1:30126945-30126964 | None:intergenic | 45.0% | |
| TGCCAATACACTACTCTACG+TGG | + | chr6_1:30127390-30127409 | Msa0881820:intron | 45.0% | |
| TGCCACGTAGAGTAGTGTAT+TGG | - | chr6_1:30127395-30127414 | None:intergenic | 45.0% | |
| ATGATGCGTTCAATCGGAGA+CGG | - | chr6_1:30127634-30127653 | None:intergenic | 45.0% | |
| CAGAGGATGATGCGTTCAAT+CGG | - | chr6_1:30127640-30127659 | None:intergenic | 45.0% | |
| TCAATTGCATCCTTCTGTGG+TGG | + | chr6_1:30127736-30127755 | Msa0881820:CDS | 45.0% | |
| TGAGAAGTTTCGATCGGAAG+AGG | - | chr6_1:30127805-30127824 | None:intergenic | 45.0% | |
| GGAGACTGAGAAGTTTCGAT+CGG | - | chr6_1:30127811-30127830 | None:intergenic | 45.0% | |
| ! | GCATGATCAAATTCTGAGGG+AGG | - | chr6_1:30128694-30128713 | None:intergenic | 45.0% |
| TCCAAAGACAGCCAATTCCA+TGG | - | chr6_1:30128953-30128972 | None:intergenic | 45.0% | |
| ! | CTTCATCGAGAGCGAGTTTT+TGG | + | chr6_1:30129180-30129199 | Msa0881820:CDS | 45.0% |
| !!! | AATTAAATATTTTTGTTATT+TGG | + | chr6_1:30128201-30128220 | Msa0881820:intron | 5.0% |
| ! | AGGAAGTTTGCTTCGGGTCA+TGG | + | chr6_1:30127187-30127206 | Msa0881820:intron | 50.0% |
| ! | GGAAGTTTGCTTCGGGTCAT+GGG | + | chr6_1:30127188-30127207 | Msa0881820:intron | 50.0% |
| !! | ATCGGAGATGGTGGAAGAAG+AGG | - | chr6_1:30127565-30127584 | None:intergenic | 50.0% |
| ACAGAGGAGGATACGTCGAT+CGG | - | chr6_1:30127583-30127602 | None:intergenic | 50.0% | |
| GGATTGACGGTGGGATTGAT+CGG | - | chr6_1:30127666-30127685 | None:intergenic | 50.0% | |
| ATCCACCGGAGAAGGATTGA+CGG | - | chr6_1:30127679-30127698 | None:intergenic | 50.0% | |
| TGATCGATCGCATCCTTCTC+TGG | + | chr6_1:30127702-30127721 | Msa0881820:CDS | 50.0% | |
| GATTGGAGATCCACCAGAGA+AGG | - | chr6_1:30127718-30127737 | None:intergenic | 50.0% | |
| TGAATTGCGATCGGAGACTC+AGG | - | chr6_1:30127871-30127890 | None:intergenic | 50.0% | |
| GAACAATCGAGGTGGAAGAG+TGG | + | chr6_1:30128648-30128667 | Msa0881820:intron | 50.0% | |
| GCCATGGAATTGGCTGTCTT+TGG | + | chr6_1:30128949-30128968 | Msa0881820:intron | 50.0% | |
| !!! | GAGCGAGTTTTTGGTAGAGC+AGG | + | chr6_1:30129189-30129208 | Msa0881820:CDS | 50.0% |
| GTTTGCTTCGGGTCATGGGT+TGG | + | chr6_1:30127192-30127211 | Msa0881820:intron | 55.0% | |
| TGGTGGAAGAAGAGGTCGCA+CGG | - | chr6_1:30127557-30127576 | None:intergenic | 55.0% | |
| GATACGTCGATCGGAGATGG+TGG | - | chr6_1:30127574-30127593 | None:intergenic | 55.0% | |
| GAGGATACGTCGATCGGAGA+TGG | - | chr6_1:30127577-30127596 | None:intergenic | 55.0% | |
| ! | TCCTCCTCTGTCTCTAGCTC+CGG | + | chr6_1:30127592-30127611 | Msa0881820:CDS | 55.0% |
| CGGAGGAGATAGAGATCCAC+CGG | - | chr6_1:30127614-30127633 | None:intergenic | 55.0% | |
| ATGCGTTCAATCGGAGACGG+AGG | - | chr6_1:30127631-30127650 | None:intergenic | 55.0% | |
| GTGGGATTGATCGGAGACAG+AGG | - | chr6_1:30127657-30127676 | None:intergenic | 55.0% | |
| TCCCACCGTCAATCCTTCTC+CGG | + | chr6_1:30127671-30127690 | Msa0881820:CDS | 55.0% | |
| ACCGGAGAAGGATTGACGGT+GGG | - | chr6_1:30127675-30127694 | None:intergenic | 55.0% | |
| GATCAGAGATCCACCGGAGA+AGG | - | chr6_1:30127687-30127706 | None:intergenic | 55.0% | |
| GCGATCGATCAGAGATCCAC+CGG | - | chr6_1:30127693-30127712 | None:intergenic | 55.0% | |
| TCGATCGCATCCTTCTCTGG+TGG | + | chr6_1:30127705-30127724 | Msa0881820:CDS | 55.0% | |
| GATCGGAGATCCACCACAGA+AGG | - | chr6_1:30127749-30127768 | None:intergenic | 55.0% | |
| GATCTCCGATCGATCTGCAC+CGG | + | chr6_1:30127758-30127777 | Msa0881820:CDS | 55.0% | |
| ATCCACCGGTGCAGATCGAT+CGG | - | chr6_1:30127766-30127785 | None:intergenic | 55.0% | |
| CGGAGGAGGATGGGATTGTT+CGG | - | chr6_1:30127832-30127851 | None:intergenic | 55.0% | |
| GATCGAAGACGGAGGAGGAT+GGG | - | chr6_1:30127841-30127860 | None:intergenic | 55.0% | |
| CAGGAGGATGCGATCGAAGA+CGG | - | chr6_1:30127852-30127871 | None:intergenic | 55.0% | |
| ATTGCGATCGGAGACTCAGG+AGG | - | chr6_1:30127868-30127887 | None:intergenic | 55.0% | |
| CTGAGGGAGGGCTCACAATA+GGG | - | chr6_1:30128681-30128700 | None:intergenic | 55.0% | |
| TCTGAGGGAGGGCTCACAAT+AGG | - | chr6_1:30128682-30128701 | None:intergenic | 55.0% | |
| TCGCACGGAGGAAGTGATGG+TGG | - | chr6_1:30127542-30127561 | None:intergenic | 60.0% | |
| AGGTCGCACGGAGGAAGTGA+TGG | - | chr6_1:30127545-30127564 | None:intergenic | 60.0% | |
| TGGAAGAAGAGGTCGCACGG+AGG | - | chr6_1:30127554-30127573 | None:intergenic | 60.0% | |
| ACCGGAGCTAGAGACAGAGG+AGG | - | chr6_1:30127596-30127615 | None:intergenic | 60.0% | |
| ! | TCCTCTGTCTCTAGCTCCGG+TGG | + | chr6_1:30127595-30127614 | Msa0881820:CDS | 60.0% |
| TCCACCGGAGCTAGAGACAG+AGG | - | chr6_1:30127599-30127618 | None:intergenic | 60.0% | |
| CACCGGAGAAGGATTGACGG+TGG | - | chr6_1:30127676-30127695 | None:intergenic | 60.0% | |
| CACCGTCAATCCTTCTCCGG+TGG | + | chr6_1:30127674-30127693 | Msa0881820:CDS | 60.0% | |
| ! | GATCTGCACCGGTGGATCTC+CGG | + | chr6_1:30127769-30127788 | Msa0881820:CDS | 60.0% |
| CGGAAGAGGATGCGATCGAC+CGG | - | chr6_1:30127791-30127810 | None:intergenic | 60.0% | |
| CGATCGAAGACGGAGGAGGA+TGG | - | chr6_1:30127842-30127861 | None:intergenic | 60.0% | |
| GATGCGATCGAAGACGGAGG+AGG | - | chr6_1:30127846-30127865 | None:intergenic | 60.0% | |
| GAGGATGCGATCGAAGACGG+AGG | - | chr6_1:30127849-30127868 | None:intergenic | 60.0% | |
| ! | AGATGCATGGGAGCGTGCAC+AGG | + | chr6_1:30128584-30128603 | Msa0881820:CDS | 60.0% |
| CTCCGATCGATCTGCACCGG+TGG | + | chr6_1:30127761-30127780 | Msa0881820:CDS | 65.0% | |
| GCGATCGACCGGAGATCCAC+CGG | - | chr6_1:30127780-30127799 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 30126818 | 30129476 | 30126818 | ID=Msa0881820;Name=Msa0881820 |
| chr6_1 | mRNA | 30126818 | 30129476 | 30126818 | ID=Msa0881820-mRNA-1;Parent=Msa0881820;Name=Msa0881820-mRNA-1;_AED=0.62;_eAED=0.62;_QI=0|0.2|0|0.66|0.6|0.66|6|0|271 |
| chr6_1 | exon | 30126818 | 30126973 | 30126818 | ID=Msa0881820-mRNA-1:exon:7475;Parent=Msa0881820-mRNA-1 |
| chr6_1 | exon | 30127493 | 30127901 | 30127493 | ID=Msa0881820-mRNA-1:exon:7476;Parent=Msa0881820-mRNA-1 |
| chr6_1 | exon | 30128505 | 30128605 | 30128505 | ID=Msa0881820-mRNA-1:exon:7477;Parent=Msa0881820-mRNA-1 |
| chr6_1 | exon | 30128649 | 30128736 | 30128649 | ID=Msa0881820-mRNA-1:exon:7478;Parent=Msa0881820-mRNA-1 |
| chr6_1 | exon | 30129179 | 30129210 | 30129179 | ID=Msa0881820-mRNA-1:exon:7479;Parent=Msa0881820-mRNA-1 |
| chr6_1 | exon | 30129447 | 30129476 | 30129447 | ID=Msa0881820-mRNA-1:exon:7480;Parent=Msa0881820-mRNA-1 |
| chr6_1 | CDS | 30126818 | 30126973 | 30126818 | ID=Msa0881820-mRNA-1:cds;Parent=Msa0881820-mRNA-1 |
| chr6_1 | CDS | 30127493 | 30127901 | 30127493 | ID=Msa0881820-mRNA-1:cds;Parent=Msa0881820-mRNA-1 |
| chr6_1 | CDS | 30128505 | 30128605 | 30128505 | ID=Msa0881820-mRNA-1:cds;Parent=Msa0881820-mRNA-1 |
| chr6_1 | CDS | 30128649 | 30128736 | 30128649 | ID=Msa0881820-mRNA-1:cds;Parent=Msa0881820-mRNA-1 |
| chr6_1 | CDS | 30129179 | 30129210 | 30129179 | ID=Msa0881820-mRNA-1:cds;Parent=Msa0881820-mRNA-1 |
| chr6_1 | CDS | 30129447 | 30129476 | 30129447 | ID=Msa0881820-mRNA-1:cds;Parent=Msa0881820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
