AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0883460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0883460 MtrunA17_Chr6g0463351 95.095 367 13 3 1 367 1 362 0.0 703
Msa0883460 MtrunA17_Chr1g0201361 36.364 264 143 4 65 326 44 284 2.44e-43 152
Msa0883460 MtrunA17_Chr8g0383321 34.812 293 151 8 38 326 29 285 2.04e-40 145
Msa0883460 MtrunA17_Chr8g0386871 33.221 298 152 9 61 340 313 581 3.89e-35 135
Msa0883460 MtrunA17_Chr8g0386871 26.667 180 119 4 70 242 414 587 1.07e-11 66.2
Msa0883460 MtrunA17_Chr3g0086811 33.631 336 163 10 75 359 31 357 4.00e-33 126
Msa0883460 MtrunA17_Chr1g0200171 31.034 290 178 6 72 357 525 796 1.86e-29 120
Msa0883460 MtrunA17_Chr2g0293621 30.000 280 166 8 84 340 41 313 2.06e-29 115
Msa0883460 MtrunA17_Chr2g0293621 28.358 201 129 4 166 357 30 224 2.53e-15 76.3
Msa0883460 MtrunA17_Chr7g0219891 28.479 309 173 12 78 358 25 313 5.14e-28 111
Msa0883460 MtrunA17_Chr7g0219891 25.431 232 152 7 27 239 78 307 5.77e-11 63.2
Msa0883460 MtrunA17_Chr5g0431531 29.210 291 188 7 74 355 41 322 7.29e-27 108
Msa0883460 MtrunA17_Chr4g0004571 27.815 302 192 8 67 355 14 302 8.99e-26 105
Msa0883460 MtrunA17_Chr6g0455381 25.559 313 187 8 73 360 20 311 1.01e-25 105
Msa0883460 MtrunA17_Chr8g0366791 30.952 294 175 6 74 346 11 297 4.21e-25 103
Msa0883460 MtrunA17_Chr8g0385571 28.947 304 187 9 51 343 214 499 9.84e-25 105
Msa0883460 MtrunA17_Chr4g0067231 25.633 316 198 6 63 341 5 320 3.04e-24 101
Msa0883460 MtrunA17_Chr4g0028531 30.072 276 166 8 69 327 19 284 9.90e-24 100
Msa0883460 MtrunA17_Chr2g0296061 27.157 313 193 9 63 340 6 318 1.78e-23 99.4
Msa0883460 MtrunA17_Chr4g0063561 27.562 283 189 6 74 349 125 398 3.70e-23 99.8
Msa0883460 MtrunA17_Chr4g0063561 28.646 192 124 3 166 354 124 305 6.82e-16 78.6
Msa0883460 MtrunA17_Chr2g0331771 28.523 298 169 9 67 342 154 429 4.48e-23 99.8
Msa0883460 MtrunA17_Chr1g0149111 25.725 276 190 5 74 343 141 407 5.12e-22 96.7
Msa0883460 MtrunA17_Chr7g0252401 27.660 282 178 8 74 343 209 476 1.86e-21 95.5
Msa0883460 MtrunA17_Chr7g0240341 26.667 300 194 6 74 353 27 320 2.31e-21 93.6
Msa0883460 MtrunA17_Chr7g0240341 27.072 181 122 3 69 239 131 311 5.83e-14 72.0
Msa0883460 MtrunA17_Chr3g0137941 25.623 281 194 5 74 348 124 395 7.77e-21 93.2
Msa0883460 MtrunA17_Chr3g0137941 31.579 190 118 3 167 354 124 303 2.94e-17 82.4
Msa0883460 MtrunA17_Chr5g0411411 28.912 294 181 5 74 346 11 297 8.19e-21 91.7
Msa0883460 MtrunA17_Chr6g0461981 27.027 333 207 11 32 346 21 335 2.13e-20 91.3
Msa0883460 MtrunA17_Chr7g0251981 27.950 322 193 12 44 346 53 354 4.36e-20 90.5
Msa0883460 MtrunA17_Chr3g0131501 26.408 284 182 7 74 343 207 477 3.09e-18 85.9
Msa0883460 MtrunA17_Chr4g0046981 27.338 278 164 7 74 325 14 279 1.07e-17 82.8
Msa0883460 MtrunA17_Chr8g0372531 25.806 279 176 9 86 340 28 299 1.34e-17 82.4
Msa0883460 MtrunA17_Chr1g0195101 25.000 280 176 8 82 340 31 297 1.43e-17 82.4
Msa0883460 MtrunA17_Chr1g0195101 28.313 166 104 5 88 239 136 300 9.71e-13 68.2
Msa0883460 MtrunA17_Chr8g0385891 27.726 321 193 14 45 346 45 345 2.70e-17 82.0
Msa0883460 MtrunA17_Chr3g0135861 27.273 308 176 9 59 332 25 318 2.91e-17 82.0
Msa0883460 MtrunA17_Chr3g0135861 25.000 212 137 3 159 352 29 236 3.62e-14 72.8
Msa0883460 MtrunA17_Chr8g0343381 26.351 296 162 10 84 333 45 330 4.19e-17 81.6
Msa0883460 MtrunA17_Chr6g0463341 78.261 46 8 1 321 366 1 44 6.00e-17 74.7
Msa0883460 MtrunA17_Chr4g0000261 25.152 330 197 9 43 343 42 350 9.95e-17 80.5
Msa0883460 MtrunA17_Chr8g0347451 24.415 299 196 9 74 343 53 350 3.37e-16 79.0
Msa0883460 MtrunA17_Chr5g0436041 27.645 293 185 6 74 346 36 321 3.81e-16 78.6
Msa0883460 MtrunA17_Chr7g0269701 27.740 292 173 11 71 340 25 300 6.16e-16 77.8
Msa0883460 MtrunA17_Chr7g0269701 29.545 176 109 5 88 249 139 313 2.42e-15 76.3
Msa0883460 MtrunA17_Chr7g0269701 30.000 210 131 5 167 366 24 227 3.95e-12 66.6
Msa0883460 MtrunA17_Chr5g0423111 25.448 279 176 10 82 340 33 299 1.46e-15 77.0
Msa0883460 MtrunA17_Chr5g0423111 29.586 169 101 6 87 238 134 301 7.64e-14 72.0
Msa0883460 MtrunA17_Chr7g0275411 25.938 320 165 13 62 325 11 314 2.68e-15 76.3
Msa0883460 MtrunA17_Chr6g0488081 25.980 204 140 3 159 352 13 215 5.99e-15 74.7
Msa0883460 MtrunA17_Chr6g0488081 24.830 294 186 9 74 343 21 303 2.72e-14 72.8
Msa0883460 MtrunA17_Chr5g0396801 22.973 296 202 7 74 343 40 335 1.89e-14 73.6
Msa0883460 MtrunA17_Chr8g0367641 24.684 316 176 8 75 343 9 309 9.61e-14 71.2
Msa0883460 MtrunA17_Chr4g0051841 25.424 295 179 11 69 344 29 301 1.34e-13 70.9
Msa0883460 MtrunA17_Chr8g0378951 27.014 211 132 5 164 367 20 215 1.18e-12 67.8
Msa0883460 MtrunA17_Chr5g0412401 25.237 317 180 10 75 343 9 316 2.54e-12 67.0
Msa0883460 MtrunA17_Chr3g0126331 22.011 368 196 11 38 325 10 366 3.86e-12 67.0
Msa0883460 MtrunA17_Chr1g0196921 24.365 197 129 5 169 350 18 209 1.28e-11 64.7
Msa0883460 MtrunA17_Chr1g0196921 22.909 275 183 8 88 343 30 294 5.77e-11 62.8
Msa0883460 MtrunA17_Chr7g0242311 26.786 168 110 2 199 366 131 285 1.37e-11 65.5
Msa0883460 MtrunA17_Chr7g0242311 24.719 267 180 6 88 346 103 356 2.47e-11 64.7
Msa0883460 MtrunA17_Chr5g0416661 27.465 284 176 10 72 334 11 285 3.11e-11 63.9
Msa0883460 MtrunA17_Chr3g0136041 22.378 286 169 9 84 324 44 321 6.24e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0883460 AT5G42130.1 60.775 413 113 7 1 365 1 412 7.13e-155 442
Msa0883460 AT1G34065.2 32.514 366 189 11 1 355 18 336 3.13e-43 153
Msa0883460 AT1G34065.2 28.718 195 114 5 166 360 76 245 1.86e-12 68.2
Msa0883460 AT1G34065.1 34.828 290 149 7 75 355 85 343 3.88e-43 153
Msa0883460 AT1G34065.1 28.718 195 114 5 166 360 83 252 1.91e-12 68.2
Msa0883460 AT4G39460.2 36.162 271 144 6 60 326 46 291 1.11e-41 149
Msa0883460 AT4G39460.1 36.162 271 144 6 60 326 46 291 1.11e-41 149
Msa0883460 AT4G39460.3 36.162 271 144 6 60 326 46 291 1.11e-41 149
Msa0883460 AT1G74240.1 35.314 303 154 6 75 343 39 333 1.04e-33 128
Msa0883460 AT4G11440.1 32.384 281 165 8 72 340 330 597 2.52e-32 128
Msa0883460 AT4G11440.2 32.384 281 165 8 72 340 330 597 2.52e-32 128
Msa0883460 AT1G74240.2 34.247 292 150 6 86 343 2 285 1.20e-29 116
Msa0883460 AT5G15640.1 29.073 313 178 10 66 353 24 317 4.23e-28 112
Msa0883460 AT5G15640.2 29.073 313 178 10 66 353 17 310 1.09e-27 111
Msa0883460 AT2G35800.1 28.881 277 179 4 72 346 545 805 1.14e-27 115
Msa0883460 AT2G26360.1 30.769 286 176 7 72 351 115 384 1.24e-27 112
Msa0883460 AT2G30160.1 29.066 289 172 7 74 343 44 318 1.79e-27 110
Msa0883460 AT1G07030.1 29.562 274 181 5 74 340 42 310 8.51e-27 108
Msa0883460 AT2G37890.1 30.483 269 162 6 74 323 47 309 8.63e-26 106
Msa0883460 AT2G37890.1 28.070 171 98 5 203 364 92 246 3.52e-14 73.2
Msa0883460 AT2G37890.1 27.684 177 116 5 74 239 154 329 8.08e-13 69.3
Msa0883460 AT5G01340.1 31.317 281 157 11 69 327 14 280 8.67e-25 103
Msa0883460 AT3G53940.1 29.123 285 179 5 74 340 75 354 1.50e-24 103
Msa0883460 AT3G53940.1 29.545 176 114 3 74 239 182 357 1.60e-14 74.3
Msa0883460 AT3G53940.1 29.167 168 100 4 203 364 120 274 2.82e-12 67.8
Msa0883460 AT3G21390.2 27.003 337 199 9 43 342 22 348 1.41e-23 100
Msa0883460 AT3G21390.1 27.302 315 192 8 65 342 12 326 1.65e-23 100
Msa0883460 AT1G79900.1 30.627 271 165 8 87 349 31 286 3.21e-23 98.6
Msa0883460 AT5G48970.1 26.433 314 191 9 66 340 16 328 1.09e-22 97.8
Msa0883460 AT2G33820.1 27.835 291 176 7 74 340 20 300 1.66e-22 97.1
Msa0883460 AT5G46800.2 28.956 297 180 6 74 346 10 299 2.31e-22 96.3
Msa0883460 AT5G46800.3 28.956 297 180 6 74 346 10 299 2.31e-22 96.3
Msa0883460 AT5G46800.1 28.956 297 180 6 74 346 10 299 2.31e-22 96.3
Msa0883460 AT3G55640.1 26.990 289 188 6 74 344 40 323 1.11e-21 94.7
Msa0883460 AT3G55640.1 28.804 184 121 4 69 242 142 325 1.60e-13 71.2
Msa0883460 AT3G55640.1 28.571 168 101 4 203 364 85 239 4.74e-13 69.7
Msa0883460 AT3G55640.4 26.990 289 188 6 74 344 40 323 1.11e-21 94.7
Msa0883460 AT3G55640.4 28.804 184 121 4 69 242 142 325 1.60e-13 71.2
Msa0883460 AT3G55640.4 28.571 168 101 4 203 364 85 239 4.74e-13 69.7
Msa0883460 AT4G32400.1 24.549 277 192 5 74 343 116 382 1.66e-20 92.4
Msa0883460 AT4G32400.1 28.804 184 120 5 74 248 210 391 1.39e-12 68.9
Msa0883460 AT3G20240.1 26.646 319 192 10 54 347 39 340 4.37e-20 90.5
Msa0883460 AT2G33820.3 27.090 299 176 8 74 340 20 308 5.63e-20 89.7
Msa0883460 AT3G48850.1 27.586 290 170 10 74 344 73 341 9.58e-19 87.0
Msa0883460 AT2G47490.1 26.882 279 171 10 82 340 29 294 1.74e-18 85.5
Msa0883460 AT2G47490.1 26.590 173 112 5 87 245 132 303 1.00e-12 68.6
Msa0883460 AT2G33820.4 31.522 184 106 5 74 239 20 201 3.43e-18 84.0
Msa0883460 AT4G01100.1 23.154 298 201 7 74 343 44 341 6.11e-18 84.3
Msa0883460 AT5G61810.2 25.979 281 176 7 74 340 67 329 2.15e-17 82.8
Msa0883460 AT5G51050.1 25.524 286 185 7 74 346 225 495 3.10e-17 83.2
Msa0883460 AT5G61810.1 25.979 281 176 7 74 340 210 472 5.65e-17 82.4
Msa0883460 AT4G01100.2 22.115 312 201 6 74 343 44 355 2.39e-16 80.1
Msa0883460 AT5G48970.2 25.391 256 167 7 109 340 2 257 6.91e-16 77.4
Msa0883460 AT5G66380.1 25.430 291 189 8 72 340 10 294 2.71e-15 76.3
Msa0883460 AT4G01100.3 22.535 284 192 7 88 343 8 291 5.08e-15 75.5
Msa0883460 AT4G03115.3 25.197 254 175 6 73 320 71 315 8.62e-15 75.1
Msa0883460 AT4G03115.3 28.372 215 120 8 159 358 56 251 1.35e-12 68.6
Msa0883460 AT1G72820.1 25.430 291 161 12 76 324 40 316 8.81e-15 75.1
Msa0883460 AT1G72820.2 25.430 291 161 12 76 324 40 316 8.81e-15 75.1
Msa0883460 AT5G14040.1 25.962 312 192 13 54 346 63 354 1.18e-14 75.1
Msa0883460 AT4G03115.1 25.197 254 175 6 73 320 39 283 1.32e-14 74.3
Msa0883460 AT4G03115.1 28.372 215 120 8 159 358 24 219 1.78e-12 67.8
Msa0883460 AT1G14140.1 25.979 281 170 10 88 344 32 298 2.76e-14 73.2
Msa0883460 AT1G14140.1 25.654 191 120 5 169 340 20 207 4.12e-12 66.6
Msa0883460 AT5G07320.1 24.345 267 173 7 88 343 225 473 3.74e-14 73.9
Msa0883460 AT5G07320.1 25.568 176 117 4 74 239 302 473 3.60e-12 67.8
Msa0883460 AT3G53940.2 28.037 214 135 4 74 269 75 287 3.83e-14 72.4
Msa0883460 AT3G53940.2 29.167 168 100 4 203 364 120 274 1.72e-12 67.8
Msa0883460 AT1G14560.1 27.044 159 109 1 199 350 65 223 4.84e-14 72.8
Msa0883460 AT1G14560.1 24.014 279 185 6 88 343 43 317 1.35e-13 71.6
Msa0883460 AT1G14560.2 27.044 159 109 1 199 350 65 223 4.94e-14 72.4
Msa0883460 AT1G14560.2 24.903 257 166 6 88 321 43 295 1.83e-12 67.8
Msa0883460 AT4G26180.1 22.293 314 205 9 58 346 10 309 5.41e-14 72.8
Msa0883460 AT4G27940.1 22.251 391 206 12 26 328 9 389 7.78e-14 72.8
Msa0883460 AT3G55640.2 27.570 214 127 7 166 364 39 239 8.08e-14 71.2
Msa0883460 AT3G55640.2 26.168 214 139 5 74 269 40 252 2.32e-12 67.0
Msa0883460 AT3G55640.3 27.570 214 127 7 166 364 39 239 8.08e-14 71.2
Msa0883460 AT3G55640.3 26.168 214 139 5 74 269 40 252 2.32e-12 67.0
Msa0883460 AT5G27520.1 27.465 284 178 9 72 334 13 289 8.99e-14 72.0
Msa0883460 AT1G25380.1 28.000 175 108 6 87 245 136 308 1.03e-13 72.0
Msa0883460 AT1G25380.1 26.148 283 170 11 82 340 33 300 1.52e-13 71.6
Msa0883460 AT1G25380.2 28.000 175 108 6 87 245 136 308 1.03e-13 72.0
Msa0883460 AT1G25380.2 26.148 283 170 11 82 340 33 300 1.52e-13 71.6
Msa0883460 AT5G26200.1 24.444 270 166 6 86 324 53 315 1.83e-13 71.2
Msa0883460 AT5G19760.1 27.907 172 106 3 164 328 17 177 2.75e-13 70.1
Msa0883460 AT5G64970.1 24.172 302 184 8 74 346 137 422 3.64e-13 70.9
Msa0883460 AT4G26180.2 23.183 289 183 9 58 321 10 284 3.74e-13 69.7
Msa0883460 AT4G26180.2 25.123 203 143 2 157 350 13 215 8.45e-13 68.6
Msa0883460 AT5G09470.1 24.255 235 158 5 120 343 104 329 5.14e-13 69.7
Msa0883460 AT4G03115.4 28.372 215 120 8 159 358 24 219 6.83e-13 67.8
Msa0883460 AT4G03115.2 28.372 215 120 8 159 358 24 219 8.97e-13 67.4
Msa0883460 AT5G64970.2 23.588 301 185 8 75 346 14 298 8.98e-13 68.6
Msa0883460 AT2G17270.1 25.352 284 178 10 75 344 25 288 1.55e-12 68.2
Msa0883460 AT3G05290.1 26.408 284 181 9 72 334 11 287 4.22e-12 67.0
Msa0883460 AT2G22500.1 26.032 315 177 10 71 343 5 305 1.92e-11 64.7
Msa0883460 AT2G33820.2 26.263 198 120 5 159 340 32 219 5.53e-11 62.4

Find 111 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCGCCTTTGGTTTGCATTT+TGG 0.176496 6_1:+34542451 None:intergenic
GAAGCGAAGGGGTTTGAGTT+TGG 0.246107 6_1:+34542629 None:intergenic
GCCGCTATTGGCGAAGGTTT+TGG 0.255110 6_1:+34542394 None:intergenic
TTTGCAGAATGAAGGTGTTT+TGG 0.264365 6_1:-34542120 Msa0883460:CDS
AATGAGAGATGGTTTGGTTT+TGG 0.285524 6_1:+34542692 None:intergenic
AAGCGAAGGGGTTTGAGTTT+GGG 0.298240 6_1:+34542630 None:intergenic
CCTCCGATTTCAGGGGCGTT+GGG 0.309525 6_1:-34542242 Msa0883460:CDS
GTAAATTTGCGAAGCGCCTT+TGG 0.318563 6_1:+34542439 None:intergenic
GTTTATGAAGCATACGAATA+AGG 0.319594 6_1:-34542009 Msa0883460:CDS
GTGATTTGTGGGGCGTTGGC+GGG 0.323397 6_1:-34541963 Msa0883460:CDS
TGTGATTTGTGGGGCGTTGG+CGG 0.357288 6_1:-34541964 Msa0883460:CDS
AGTGAGAGAGGATGAGATGT+TGG 0.357918 6_1:+34542724 None:intergenic
AAGGGGTTTGGTTGGACCGG+GGG 0.358480 6_1:+34542580 None:intergenic
TTCGCCAATAGCGGCATTCT+CGG 0.371473 6_1:-34542386 Msa0883460:CDS
GCATACGAATAAGGATTGTT+TGG 0.385610 6_1:-34542000 Msa0883460:CDS
GGTTATGTATGGTGGGGTTA+AGG 0.386748 6_1:-34541847 Msa0883460:CDS
TACTTTGGTAGCTGTGAGTT+TGG 0.389241 6_1:-34542308 Msa0883460:CDS
AGGGGTTTGGTTGGACCGGG+GGG 0.407203 6_1:+34542581 None:intergenic
TTCCCCAACGCCCCTGAAAT+CGG 0.407512 6_1:+34542239 None:intergenic
GCATTCATCGGCGCAGGTGC+CGG 0.409130 6_1:-34542530 Msa0883460:CDS
AACATCCAATGGCGTAGTTA+TGG 0.413241 6_1:+34541926 None:intergenic
TGACTAGAGGAATGGGTCCT+AGG 0.415968 6_1:-34541782 Msa0883460:CDS
TCATTCCATTTCAATCTCAA+TGG 0.419551 6_1:-34542674 Msa0883460:CDS
TGGAGATGGAAGAGTGAGAG+AGG 0.434963 6_1:+34542712 None:intergenic
GAAAAGGGGTTTGGTTGGAC+CGG 0.436968 6_1:+34542577 None:intergenic
GCAGGTGCCGGCGGAATCGC+CGG 0.437374 6_1:-34542518 Msa0883460:CDS
TGATTTGTGGGGCGTTGGCG+GGG 0.437698 6_1:-34541962 Msa0883460:CDS
AAATGGAATGAGAGATGGTT+TGG 0.440842 6_1:+34542686 None:intergenic
TCCTCCGATTTCAGGGGCGT+TGG 0.441446 6_1:-34542243 Msa0883460:CDS
CGCTGCGTTATCAATTCCTT+CGG 0.442471 6_1:+34542191 None:intergenic
TGTTGAGGAATTTGCCTGCT+GGG 0.444165 6_1:-34542070 Msa0883460:CDS
AAAGGGGTTTGGTTGGACCG+GGG 0.444365 6_1:+34542579 None:intergenic
CGGTGCAGAGTGTGATTTGT+GGG 0.452137 6_1:-34541974 Msa0883460:CDS
GTATGTTAAGAGGAAGCAAT+TGG 0.454657 6_1:-34541685 Msa0883460:CDS
GAACCCGAGAATGCCGCTAT+TGG 0.454909 6_1:+34542382 None:intergenic
AAAAGGGGTTTGGTTGGACC+GGG 0.456847 6_1:+34542578 None:intergenic
CTTCAATCTCCGACTCAACC+CGG 0.473392 6_1:-34542610 Msa0883460:CDS
GGATGAGATGTTGGAATCCA+TGG 0.475039 6_1:+34542733 None:intergenic
AGGCGAGGAATGAGGCGGTT+GGG 0.475712 6_1:-34541881 Msa0883460:CDS
GTGGGGTTAAGGATACTGTA+AGG 0.478723 6_1:-34541836 Msa0883460:CDS
TTGTTGAGGAATTTGCCTGC+TGG 0.480628 6_1:-34542071 Msa0883460:CDS
GTCTTCGAACGCGCATTCAT+CGG 0.481871 6_1:-34542542 Msa0883460:CDS
GTTGGTTTGACTAGAGGAAT+GGG 0.484116 6_1:-34541789 Msa0883460:CDS
GGTTGGTTTGACTAGAGGAA+TGG 0.484380 6_1:-34541790 Msa0883460:CDS
TCGCCAATAGCGGCATTCTC+GGG 0.485241 6_1:-34542385 Msa0883460:CDS
GATTTGTGGGGCGTTGGCGG+GGG 0.487414 6_1:-34541961 Msa0883460:CDS
TTGAAGGAAGAAGGGTGGGT+TGG 0.489069 6_1:-34541807 Msa0883460:CDS
TTGCGGAGGTTATGTATGGT+GGG 0.491320 6_1:-34541854 Msa0883460:CDS
GCTTCCTCGGCTGTTTACTT+TGG 0.494304 6_1:-34542323 Msa0883460:CDS
GGGGTTTGGTTGGACCGGGG+GGG 0.497144 6_1:+34542582 None:intergenic
GTTGCGGAGGTTATGTATGG+TGG 0.500010 6_1:-34541855 Msa0883460:CDS
AGCAGTTGTTGTCGGTTCGA+CGG 0.501547 6_1:-34542345 Msa0883460:CDS
GGCTTCCATAACTACGCCAT+TGG 0.501632 6_1:-34541931 Msa0883460:CDS
AAGGTTGCGGAGGTTATGTA+TGG 0.504862 6_1:-34541858 Msa0883460:CDS
GACTAGAGGAATGGGTCCTA+GGG 0.505172 6_1:-34541781 Msa0883460:CDS
GAGGAATGAGGCGGTTGGGA+AGG 0.510334 6_1:-34541877 Msa0883460:CDS
TGAGTCCATTGAGATTGAAA+TGG 0.510855 6_1:+34542669 None:intergenic
TGTGTCGAGAGGATGGAGAC+AGG 0.513448 6_1:+34542481 None:intergenic
CAGGCGAGGAATGAGGCGGT+TGG 0.514856 6_1:-34541882 Msa0883460:CDS
CTCCGATTTCAGGGGCGTTG+GGG 0.516025 6_1:-34542241 Msa0883460:CDS
GAGTGTGATTTGTGGGGCGT+TGG 0.516138 6_1:-34541967 Msa0883460:CDS
GCATTCTCGGGTTCTACAGC+GGG 0.517258 6_1:-34542373 Msa0883460:CDS
TGCGCGTTCGAAGACGGATA+GGG 0.518275 6_1:+34542550 None:intergenic
GAGGAAGCAATTGGAGGATG+CGG 0.518829 6_1:-34541676 Msa0883460:CDS
CCGGTGCAGAGTGTGATTTG+TGG 0.519028 6_1:-34541975 Msa0883460:CDS
GAATAAGGATTGTTTGGAGC+CGG 0.520352 6_1:-34541994 Msa0883460:CDS
GGGGTTGAACCGGGTTGAGT+CGG 0.520830 6_1:+34542601 None:intergenic
GAATGCTCCGGCGATTCCGC+CGG 0.523389 6_1:+34542511 None:intergenic
CGGATGCAGACGGGTGCGAA+GGG 0.525730 6_1:-34542170 Msa0883460:CDS
TGAGGCGGTTGGGAAGGTTG+CGG 0.528238 6_1:-34541871 Msa0883460:CDS
TGTCGGTTCGACGGCTTCCT+CGG 0.529314 6_1:-34542336 Msa0883460:CDS
ATGCGCGTTCGAAGACGGAT+AGG 0.532398 6_1:+34542549 None:intergenic
GGGTGGGTTGGTTTGACTAG+AGG 0.537595 6_1:-34541795 Msa0883460:CDS
GATGACGCAGGCGAGGAATG+AGG 0.549061 6_1:-34541889 Msa0883460:CDS
GAACGCGCATTCATCGGCGC+AGG 0.552783 6_1:-34542536 Msa0883460:CDS
CTCGTCTTCACAACATCCAA+TGG 0.558613 6_1:+34541915 None:intergenic
GCGGATGCAGACGGGTGCGA+AGG 0.558993 6_1:-34542171 Msa0883460:CDS
GAGAATGCCGCTATTGGCGA+AGG 0.559165 6_1:+34542388 None:intergenic
TGAGTCGGAGATTGAAGCGA+AGG 0.559736 6_1:+34542616 None:intergenic
CCACAAATCACACTCTGCAC+CGG 0.568277 6_1:+34541975 None:intergenic
TGTTAAGAGGAAGCAATTGG+AGG 0.569277 6_1:-34541682 Msa0883460:CDS
TTCATCGGCGCAGGTGCCGG+CGG 0.569325 6_1:-34542527 Msa0883460:CDS
TGCGGAGGTTATGTATGGTG+GGG 0.571518 6_1:-34541853 Msa0883460:CDS
TCCAAAACCTTCGCCAATAG+CGG 0.573714 6_1:-34542395 Msa0883460:CDS
CAAGCACTATGAAGAACCCT+AGG 0.574254 6_1:+34541765 None:intergenic
GAATAACTTATAACCCCAGC+AGG 0.578876 6_1:+34542056 None:intergenic
GATAACGCAGCGGATGCAGA+CGG 0.581140 6_1:-34542180 Msa0883460:CDS
CGAGGCTGATGACGCAGGCG+AGG 0.581553 6_1:-34541896 Msa0883460:CDS
GATGAATGCGCGTTCGAAGA+CGG 0.582488 6_1:+34542544 None:intergenic
ATAACGCAGCGGATGCAGAC+GGG 0.587923 6_1:-34542179 Msa0883460:CDS
GTCTGCGATTATGGTTCCGA+AGG 0.591943 6_1:-34542207 Msa0883460:CDS
GGTATTCAGCTACATTGTTG+AGG 0.593730 6_1:-34542085 Msa0883460:CDS
GATTGAAATGGAATGAGAGA+TGG 0.594874 6_1:+34542681 None:intergenic
GGCATTCTCGGGTTCTACAG+CGG 0.599446 6_1:-34542374 Msa0883460:CDS
GAAGACGAGGCTGATGACGC+AGG 0.603878 6_1:-34541901 Msa0883460:CDS
GGCGGTTGGGAAGGTTGCGG+AGG 0.609437 6_1:-34541868 Msa0883460:CDS
GAGAGGATGGAGACAGGCGT+AGG 0.611349 6_1:+34542487 None:intergenic
GTTGAGGAATTTGCCTGCTG+GGG 0.612034 6_1:-34542069 Msa0883460:CDS
TTTGATTCCTCCGATTTCAG+GGG 0.615238 6_1:-34542249 Msa0883460:CDS
AAAACCAAAATGCAAACCAA+AGG 0.626274 6_1:-34542455 Msa0883460:CDS
ACAGGCGTAGGTGAATGCTC+CGG 0.626615 6_1:+34542499 None:intergenic
GAGTCGGAGATTGAAGCGAA+GGG 0.627888 6_1:+34542617 None:intergenic
AGTCGGAGATTGAAGCGAAG+GGG 0.651168 6_1:+34542618 None:intergenic
CCCAACGCCCCTGAAATCGG+AGG 0.661793 6_1:+34542242 None:intergenic
GGATGCAGACGGGTGCGAAG+GGG 0.664448 6_1:-34542169 Msa0883460:CDS
TGGGGTTAAGGATACTGTAA+GGG 0.664936 6_1:-34541835 Msa0883460:CDS
GACGCAGGCGAGGAATGAGG+CGG 0.666166 6_1:-34541886 Msa0883460:CDS
CATTGGATGTTGTGAAGACG+AGG 0.673030 6_1:-34541914 Msa0883460:CDS
GCTACCAAAGTAAACAGCCG+AGG 0.698505 6_1:+34542319 None:intergenic
GGTGCAGAGTGTGATTTGTG+GGG 0.700089 6_1:-34541973 Msa0883460:CDS
CGAAGGAATTGATAACGCAG+CGG 0.736123 6_1:-34542190 Msa0883460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAGATTTTGCAGAATGA+AGG - chr6_1:34542253-34542272 Msa0883460:CDS 25.0%
!! TTTTGAATGAGTATGTTAAG+AGG - chr6_1:34542686-34542705 Msa0883460:CDS 25.0%
!! ATTAAGATTTTGCAGAATGA+AGG - chr6_1:34542253-34542272 Msa0883460:CDS 25.0%
!! TTTTGAATGAGTATGTTAAG+AGG - chr6_1:34542686-34542705 Msa0883460:CDS 25.0%
TCATTCCATTTCAATCTCAA+TGG - chr6_1:34541707-34541726 Msa0883460:CDS 30.0%
AAAACCAAAATGCAAACCAA+AGG - chr6_1:34541926-34541945 Msa0883460:CDS 30.0%
GTTTATGAAGCATACGAATA+AGG - chr6_1:34542372-34542391 Msa0883460:CDS 30.0%
!! TCTTCATAGTGCTTGTTTTT+CGG - chr6_1:34542624-34542643 Msa0883460:CDS 30.0%
TCATTCCATTTCAATCTCAA+TGG - chr6_1:34541707-34541726 Msa0883460:CDS 30.0%
AAAACCAAAATGCAAACCAA+AGG - chr6_1:34541926-34541945 Msa0883460:CDS 30.0%
GTTTATGAAGCATACGAATA+AGG - chr6_1:34542372-34542391 Msa0883460:CDS 30.0%
!! TCTTCATAGTGCTTGTTTTT+CGG - chr6_1:34542624-34542643 Msa0883460:CDS 30.0%
!!! AATGAGAGATGGTTTGGTTT+TGG + chr6_1:34541692-34541711 None:intergenic 35.0%
AAATGGAATGAGAGATGGTT+TGG + chr6_1:34541698-34541717 None:intergenic 35.0%
GATTGAAATGGAATGAGAGA+TGG + chr6_1:34541703-34541722 None:intergenic 35.0%
TGAGTCCATTGAGATTGAAA+TGG + chr6_1:34541715-34541734 None:intergenic 35.0%
ATCGGAGGAATCAAAAACTT+GGG + chr6_1:34542127-34542146 None:intergenic 35.0%
AATCGGAGGAATCAAAAACT+TGG + chr6_1:34542128-34542147 None:intergenic 35.0%
!! TTTTTGATTCCTCCGATTTC+AGG - chr6_1:34542130-34542149 Msa0883460:CDS 35.0%
!! TTTTGATTCCTCCGATTTCA+GGG - chr6_1:34542131-34542150 Msa0883460:CDS 35.0%
!!! TTTGCAGAATGAAGGTGTTT+TGG - chr6_1:34542261-34542280 Msa0883460:CDS 35.0%
!!! TTGCAGAATGAAGGTGTTTT+GGG - chr6_1:34542262-34542281 Msa0883460:CDS 35.0%
!!! GTGTTTTGGGTTTGTATAGA+GGG - chr6_1:34542275-34542294 Msa0883460:CDS 35.0%
GCATACGAATAAGGATTGTT+TGG - chr6_1:34542381-34542400 Msa0883460:CDS 35.0%
! TACTGTAAGGGAGATTTTGA+AGG - chr6_1:34542558-34542577 Msa0883460:CDS 35.0%
!! ATTTTGCGTTTGAAACTGCT+AGG - chr6_1:34542656-34542675 Msa0883460:CDS 35.0%
!! TTTTGCGTTTGAAACTGCTA+GGG - chr6_1:34542657-34542676 Msa0883460:CDS 35.0%
GTATGTTAAGAGGAAGCAAT+TGG - chr6_1:34542696-34542715 Msa0883460:CDS 35.0%
!!! AATGAGAGATGGTTTGGTTT+TGG + chr6_1:34541692-34541711 None:intergenic 35.0%
AAATGGAATGAGAGATGGTT+TGG + chr6_1:34541698-34541717 None:intergenic 35.0%
GATTGAAATGGAATGAGAGA+TGG + chr6_1:34541703-34541722 None:intergenic 35.0%
TGAGTCCATTGAGATTGAAA+TGG + chr6_1:34541715-34541734 None:intergenic 35.0%
ATCGGAGGAATCAAAAACTT+GGG + chr6_1:34542127-34542146 None:intergenic 35.0%
AATCGGAGGAATCAAAAACT+TGG + chr6_1:34542128-34542147 None:intergenic 35.0%
!! TTTTTGATTCCTCCGATTTC+AGG - chr6_1:34542130-34542149 Msa0883460:CDS 35.0%
!! TTTTGATTCCTCCGATTTCA+GGG - chr6_1:34542131-34542150 Msa0883460:CDS 35.0%
!!! TTTGCAGAATGAAGGTGTTT+TGG - chr6_1:34542261-34542280 Msa0883460:CDS 35.0%
!!! TTGCAGAATGAAGGTGTTTT+GGG - chr6_1:34542262-34542281 Msa0883460:CDS 35.0%
!!! GTGTTTTGGGTTTGTATAGA+GGG - chr6_1:34542275-34542294 Msa0883460:CDS 35.0%
GCATACGAATAAGGATTGTT+TGG - chr6_1:34542381-34542400 Msa0883460:CDS 35.0%
! TACTGTAAGGGAGATTTTGA+AGG - chr6_1:34542558-34542577 Msa0883460:CDS 35.0%
!! ATTTTGCGTTTGAAACTGCT+AGG - chr6_1:34542656-34542675 Msa0883460:CDS 35.0%
!! TTTTGCGTTTGAAACTGCTA+GGG - chr6_1:34542657-34542676 Msa0883460:CDS 35.0%
GTATGTTAAGAGGAAGCAAT+TGG - chr6_1:34542696-34542715 Msa0883460:CDS 35.0%
!!! AGATGGTTTGGTTTTGGAGA+TGG + chr6_1:34541686-34541705 None:intergenic 40.0%
!!! GTTTTGAAAAGGGGTTTGGT+TGG + chr6_1:34541812-34541831 None:intergenic 40.0%
!!! TAGGGTTTTGAAAAGGGGTT+TGG + chr6_1:34541816-34541835 None:intergenic 40.0%
!!! ACGGATAGGGTTTTGAAAAG+GGG + chr6_1:34541821-34541840 None:intergenic 40.0%
!!! GACGGATAGGGTTTTGAAAA+GGG + chr6_1:34541822-34541841 None:intergenic 40.0%
!!! AGACGGATAGGGTTTTGAAA+AGG + chr6_1:34541823-34541842 None:intergenic 40.0%
!! TTTTGATTGTGTCGAGAGGA+TGG + chr6_1:34541910-34541929 None:intergenic 40.0%
!!! TTGGTTTTGATTGTGTCGAG+AGG + chr6_1:34541914-34541933 None:intergenic 40.0%
! TACTTTGGTAGCTGTGAGTT+TGG - chr6_1:34542073-34542092 Msa0883460:CDS 40.0%
TTTGATTCCTCCGATTTCAG+GGG - chr6_1:34542132-34542151 Msa0883460:CDS 40.0%
! TGTTTTGTCGTCTGCGATTA+TGG - chr6_1:34542165-34542184 Msa0883460:CDS 40.0%
!!! GGTGTTTTGGGTTTGTATAG+AGG - chr6_1:34542274-34542293 Msa0883460:CDS 40.0%
GGTATTCAGCTACATTGTTG+AGG - chr6_1:34542296-34542315 Msa0883460:CDS 40.0%
GAATAACTTATAACCCCAGC+AGG + chr6_1:34542328-34542347 None:intergenic 40.0%
! GAATAAGGATTGTTTGGAGC+CGG - chr6_1:34542387-34542406 Msa0883460:CDS 40.0%
AACATCCAATGGCGTAGTTA+TGG + chr6_1:34542458-34542477 None:intergenic 40.0%
TGGGGTTAAGGATACTGTAA+GGG - chr6_1:34542546-34542565 Msa0883460:CDS 40.0%
!! AGGGAGATTTTGAAGGAAGA+AGG - chr6_1:34542565-34542584 Msa0883460:CDS 40.0%
!! GGGAGATTTTGAAGGAAGAA+GGG - chr6_1:34542566-34542585 Msa0883460:CDS 40.0%
!! AGATTTTGAAGGAAGAAGGG+TGG - chr6_1:34542569-34542588 Msa0883460:CDS 40.0%
!! GATTTTGAAGGAAGAAGGGT+GGG - chr6_1:34542570-34542589 Msa0883460:CDS 40.0%
!! GTTGGTTTGACTAGAGGAAT+GGG - chr6_1:34542592-34542611 Msa0883460:CDS 40.0%
!! TAGTGCTTGTTTTTCGGCTT+TGG - chr6_1:34542630-34542649 Msa0883460:CDS 40.0%
!! AGTGCTTGTTTTTCGGCTTT+GGG - chr6_1:34542631-34542650 Msa0883460:CDS 40.0%
TGTTAAGAGGAAGCAATTGG+AGG - chr6_1:34542699-34542718 Msa0883460:CDS 40.0%
!!! AGATGGTTTGGTTTTGGAGA+TGG + chr6_1:34541686-34541705 None:intergenic 40.0%
!!! GTTTTGAAAAGGGGTTTGGT+TGG + chr6_1:34541812-34541831 None:intergenic 40.0%
!!! TAGGGTTTTGAAAAGGGGTT+TGG + chr6_1:34541816-34541835 None:intergenic 40.0%
!!! ACGGATAGGGTTTTGAAAAG+GGG + chr6_1:34541821-34541840 None:intergenic 40.0%
!!! GACGGATAGGGTTTTGAAAA+GGG + chr6_1:34541822-34541841 None:intergenic 40.0%
!!! AGACGGATAGGGTTTTGAAA+AGG + chr6_1:34541823-34541842 None:intergenic 40.0%
!! TTTTGATTGTGTCGAGAGGA+TGG + chr6_1:34541910-34541929 None:intergenic 40.0%
!!! TTGGTTTTGATTGTGTCGAG+AGG + chr6_1:34541914-34541933 None:intergenic 40.0%
! TACTTTGGTAGCTGTGAGTT+TGG - chr6_1:34542073-34542092 Msa0883460:CDS 40.0%
TTTGATTCCTCCGATTTCAG+GGG - chr6_1:34542132-34542151 Msa0883460:CDS 40.0%
! TGTTTTGTCGTCTGCGATTA+TGG - chr6_1:34542165-34542184 Msa0883460:CDS 40.0%
!!! GGTGTTTTGGGTTTGTATAG+AGG - chr6_1:34542274-34542293 Msa0883460:CDS 40.0%
GGTATTCAGCTACATTGTTG+AGG - chr6_1:34542296-34542315 Msa0883460:CDS 40.0%
GAATAACTTATAACCCCAGC+AGG + chr6_1:34542328-34542347 None:intergenic 40.0%
! GAATAAGGATTGTTTGGAGC+CGG - chr6_1:34542387-34542406 Msa0883460:CDS 40.0%
AACATCCAATGGCGTAGTTA+TGG + chr6_1:34542458-34542477 None:intergenic 40.0%
TGGGGTTAAGGATACTGTAA+GGG - chr6_1:34542546-34542565 Msa0883460:CDS 40.0%
!! AGGGAGATTTTGAAGGAAGA+AGG - chr6_1:34542565-34542584 Msa0883460:CDS 40.0%
!! GGGAGATTTTGAAGGAAGAA+GGG - chr6_1:34542566-34542585 Msa0883460:CDS 40.0%
!! AGATTTTGAAGGAAGAAGGG+TGG - chr6_1:34542569-34542588 Msa0883460:CDS 40.0%
!! GATTTTGAAGGAAGAAGGGT+GGG - chr6_1:34542570-34542589 Msa0883460:CDS 40.0%
!! GTTGGTTTGACTAGAGGAAT+GGG - chr6_1:34542592-34542611 Msa0883460:CDS 40.0%
!! TAGTGCTTGTTTTTCGGCTT+TGG - chr6_1:34542630-34542649 Msa0883460:CDS 40.0%
!! AGTGCTTGTTTTTCGGCTTT+GGG - chr6_1:34542631-34542650 Msa0883460:CDS 40.0%
TGTTAAGAGGAAGCAATTGG+AGG - chr6_1:34542699-34542718 Msa0883460:CDS 40.0%
AGTGAGAGAGGATGAGATGT+TGG + chr6_1:34541660-34541679 None:intergenic 45.0%
! AAGCGAAGGGGTTTGAGTTT+GGG + chr6_1:34541754-34541773 None:intergenic 45.0%
!!! AGCGCCTTTGGTTTGCATTT+TGG + chr6_1:34541933-34541952 None:intergenic 45.0%
! GTAAATTTGCGAAGCGCCTT+TGG + chr6_1:34541945-34541964 None:intergenic 45.0%
TCCAAAACCTTCGCCAATAG+CGG - chr6_1:34541986-34542005 Msa0883460:CDS 45.0%
! GGGTTTTCAGCAGTTGTTGT+CGG - chr6_1:34542028-34542047 Msa0883460:CDS 45.0%
CGCTGCGTTATCAATTCCTT+CGG + chr6_1:34542193-34542212 None:intergenic 45.0%
!! CGAAGGAATTGATAACGCAG+CGG - chr6_1:34542191-34542210 Msa0883460:CDS 45.0%
TTGTTGAGGAATTTGCCTGC+TGG - chr6_1:34542310-34542329 Msa0883460:CDS 45.0%
TGTTGAGGAATTTGCCTGCT+GGG - chr6_1:34542311-34542330 Msa0883460:CDS 45.0%
CTCGTCTTCACAACATCCAA+TGG + chr6_1:34542469-34542488 None:intergenic 45.0%
CATTGGATGTTGTGAAGACG+AGG - chr6_1:34542467-34542486 Msa0883460:CDS 45.0%
AAGGTTGCGGAGGTTATGTA+TGG - chr6_1:34542523-34542542 Msa0883460:CDS 45.0%
TTGCGGAGGTTATGTATGGT+GGG - chr6_1:34542527-34542546 Msa0883460:CDS 45.0%
! GGTTATGTATGGTGGGGTTA+AGG - chr6_1:34542534-34542553 Msa0883460:CDS 45.0%
GTGGGGTTAAGGATACTGTA+AGG - chr6_1:34542545-34542564 Msa0883460:CDS 45.0%
!! GGTTGGTTTGACTAGAGGAA+TGG - chr6_1:34542591-34542610 Msa0883460:CDS 45.0%
CAAGCACTATGAAGAACCCT+AGG + chr6_1:34542619-34542638 None:intergenic 45.0%
AGTGAGAGAGGATGAGATGT+TGG + chr6_1:34541660-34541679 None:intergenic 45.0%
! AAGCGAAGGGGTTTGAGTTT+GGG + chr6_1:34541754-34541773 None:intergenic 45.0%
!!! AGCGCCTTTGGTTTGCATTT+TGG + chr6_1:34541933-34541952 None:intergenic 45.0%
! GTAAATTTGCGAAGCGCCTT+TGG + chr6_1:34541945-34541964 None:intergenic 45.0%
TCCAAAACCTTCGCCAATAG+CGG - chr6_1:34541986-34542005 Msa0883460:CDS 45.0%
! GGGTTTTCAGCAGTTGTTGT+CGG - chr6_1:34542028-34542047 Msa0883460:CDS 45.0%
CGCTGCGTTATCAATTCCTT+CGG + chr6_1:34542193-34542212 None:intergenic 45.0%
!! CGAAGGAATTGATAACGCAG+CGG - chr6_1:34542191-34542210 Msa0883460:CDS 45.0%
TTGTTGAGGAATTTGCCTGC+TGG - chr6_1:34542310-34542329 Msa0883460:CDS 45.0%
TGTTGAGGAATTTGCCTGCT+GGG - chr6_1:34542311-34542330 Msa0883460:CDS 45.0%
CTCGTCTTCACAACATCCAA+TGG + chr6_1:34542469-34542488 None:intergenic 45.0%
CATTGGATGTTGTGAAGACG+AGG - chr6_1:34542467-34542486 Msa0883460:CDS 45.0%
AAGGTTGCGGAGGTTATGTA+TGG - chr6_1:34542523-34542542 Msa0883460:CDS 45.0%
TTGCGGAGGTTATGTATGGT+GGG - chr6_1:34542527-34542546 Msa0883460:CDS 45.0%
! GGTTATGTATGGTGGGGTTA+AGG - chr6_1:34542534-34542553 Msa0883460:CDS 45.0%
GTGGGGTTAAGGATACTGTA+AGG - chr6_1:34542545-34542564 Msa0883460:CDS 45.0%
!! GGTTGGTTTGACTAGAGGAA+TGG - chr6_1:34542591-34542610 Msa0883460:CDS 45.0%
CAAGCACTATGAAGAACCCT+AGG + chr6_1:34542619-34542638 None:intergenic 45.0%
TGGAGATGGAAGAGTGAGAG+AGG + chr6_1:34541672-34541691 None:intergenic 50.0%
! GAAGCGAAGGGGTTTGAGTT+TGG + chr6_1:34541755-34541774 None:intergenic 50.0%
AGTCGGAGATTGAAGCGAAG+GGG + chr6_1:34541766-34541785 None:intergenic 50.0%
GAGTCGGAGATTGAAGCGAA+GGG + chr6_1:34541767-34541786 None:intergenic 50.0%
TGAGTCGGAGATTGAAGCGA+AGG + chr6_1:34541768-34541787 None:intergenic 50.0%
CTTCAATCTCCGACTCAACC+CGG - chr6_1:34541771-34541790 Msa0883460:CDS 50.0%
! AAAAGGGGTTTGGTTGGACC+GGG + chr6_1:34541806-34541825 None:intergenic 50.0%
! GAAAAGGGGTTTGGTTGGAC+CGG + chr6_1:34541807-34541826 None:intergenic 50.0%
GATGAATGCGCGTTCGAAGA+CGG + chr6_1:34541840-34541859 None:intergenic 50.0%
GTCTTCGAACGCGCATTCAT+CGG - chr6_1:34541839-34541858 Msa0883460:CDS 50.0%
!!! GGTTTTGGAAACTGCGTCGA+GGG + chr6_1:34541975-34541994 None:intergenic 50.0%
!!! AGGTTTTGGAAACTGCGTCG+AGG + chr6_1:34541976-34541995 None:intergenic 50.0%
TTCGCCAATAGCGGCATTCT+CGG - chr6_1:34541995-34542014 Msa0883460:CDS 50.0%
!! AGCAGTTGTTGTCGGTTCGA+CGG - chr6_1:34542036-34542055 Msa0883460:CDS 50.0%
GCTTCCTCGGCTGTTTACTT+TGG - chr6_1:34542058-34542077 Msa0883460:CDS 50.0%
GCTACCAAAGTAAACAGCCG+AGG + chr6_1:34542065-34542084 None:intergenic 50.0%
GTCTGCGATTATGGTTCCGA+AGG - chr6_1:34542174-34542193 Msa0883460:CDS 50.0%
GTTGAGGAATTTGCCTGCTG+GGG - chr6_1:34542312-34542331 Msa0883460:CDS 50.0%
CCACAAATCACACTCTGCAC+CGG + chr6_1:34542409-34542428 None:intergenic 50.0%
! CGGTGCAGAGTGTGATTTGT+GGG - chr6_1:34542407-34542426 Msa0883460:CDS 50.0%
! GGTGCAGAGTGTGATTTGTG+GGG - chr6_1:34542408-34542427 Msa0883460:CDS 50.0%
GGCTTCCATAACTACGCCAT+TGG - chr6_1:34542450-34542469 Msa0883460:CDS 50.0%
GTTGCGGAGGTTATGTATGG+TGG - chr6_1:34542526-34542545 Msa0883460:CDS 50.0%
TGCGGAGGTTATGTATGGTG+GGG - chr6_1:34542528-34542547 Msa0883460:CDS 50.0%
TTGAAGGAAGAAGGGTGGGT+TGG - chr6_1:34542574-34542593 Msa0883460:CDS 50.0%
TGACTAGAGGAATGGGTCCT+AGG - chr6_1:34542599-34542618 Msa0883460:CDS 50.0%
GACTAGAGGAATGGGTCCTA+GGG - chr6_1:34542600-34542619 Msa0883460:CDS 50.0%
GAGGAAGCAATTGGAGGATG+CGG - chr6_1:34542705-34542724 Msa0883460:CDS 50.0%
TGGAGATGGAAGAGTGAGAG+AGG + chr6_1:34541672-34541691 None:intergenic 50.0%
! GAAGCGAAGGGGTTTGAGTT+TGG + chr6_1:34541755-34541774 None:intergenic 50.0%
AGTCGGAGATTGAAGCGAAG+GGG + chr6_1:34541766-34541785 None:intergenic 50.0%
GAGTCGGAGATTGAAGCGAA+GGG + chr6_1:34541767-34541786 None:intergenic 50.0%
TGAGTCGGAGATTGAAGCGA+AGG + chr6_1:34541768-34541787 None:intergenic 50.0%
CTTCAATCTCCGACTCAACC+CGG - chr6_1:34541771-34541790 Msa0883460:CDS 50.0%
! AAAAGGGGTTTGGTTGGACC+GGG + chr6_1:34541806-34541825 None:intergenic 50.0%
! GAAAAGGGGTTTGGTTGGAC+CGG + chr6_1:34541807-34541826 None:intergenic 50.0%
GATGAATGCGCGTTCGAAGA+CGG + chr6_1:34541840-34541859 None:intergenic 50.0%
GTCTTCGAACGCGCATTCAT+CGG - chr6_1:34541839-34541858 Msa0883460:CDS 50.0%
!!! GGTTTTGGAAACTGCGTCGA+GGG + chr6_1:34541975-34541994 None:intergenic 50.0%
!!! AGGTTTTGGAAACTGCGTCG+AGG + chr6_1:34541976-34541995 None:intergenic 50.0%
TTCGCCAATAGCGGCATTCT+CGG - chr6_1:34541995-34542014 Msa0883460:CDS 50.0%
!! AGCAGTTGTTGTCGGTTCGA+CGG - chr6_1:34542036-34542055 Msa0883460:CDS 50.0%
GCTTCCTCGGCTGTTTACTT+TGG - chr6_1:34542058-34542077 Msa0883460:CDS 50.0%
GCTACCAAAGTAAACAGCCG+AGG + chr6_1:34542065-34542084 None:intergenic 50.0%
GTCTGCGATTATGGTTCCGA+AGG - chr6_1:34542174-34542193 Msa0883460:CDS 50.0%
GTTGAGGAATTTGCCTGCTG+GGG - chr6_1:34542312-34542331 Msa0883460:CDS 50.0%
CCACAAATCACACTCTGCAC+CGG + chr6_1:34542409-34542428 None:intergenic 50.0%
! CGGTGCAGAGTGTGATTTGT+GGG - chr6_1:34542407-34542426 Msa0883460:CDS 50.0%
! GGTGCAGAGTGTGATTTGTG+GGG - chr6_1:34542408-34542427 Msa0883460:CDS 50.0%
GGCTTCCATAACTACGCCAT+TGG - chr6_1:34542450-34542469 Msa0883460:CDS 50.0%
GTTGCGGAGGTTATGTATGG+TGG - chr6_1:34542526-34542545 Msa0883460:CDS 50.0%
TGCGGAGGTTATGTATGGTG+GGG - chr6_1:34542528-34542547 Msa0883460:CDS 50.0%
TTGAAGGAAGAAGGGTGGGT+TGG - chr6_1:34542574-34542593 Msa0883460:CDS 50.0%
TGACTAGAGGAATGGGTCCT+AGG - chr6_1:34542599-34542618 Msa0883460:CDS 50.0%
GACTAGAGGAATGGGTCCTA+GGG - chr6_1:34542600-34542619 Msa0883460:CDS 50.0%
GAGGAAGCAATTGGAGGATG+CGG - chr6_1:34542705-34542724 Msa0883460:CDS 50.0%
! AAAGGGGTTTGGTTGGACCG+GGG + chr6_1:34541805-34541824 None:intergenic 55.0%
TGCGCGTTCGAAGACGGATA+GGG + chr6_1:34541834-34541853 None:intergenic 55.0%
ATGCGCGTTCGAAGACGGAT+AGG + chr6_1:34541835-34541854 None:intergenic 55.0%
ACAGGCGTAGGTGAATGCTC+CGG + chr6_1:34541885-34541904 None:intergenic 55.0%
TGTGTCGAGAGGATGGAGAC+AGG + chr6_1:34541903-34541922 None:intergenic 55.0%
! GCCGCTATTGGCGAAGGTTT+TGG + chr6_1:34541990-34542009 None:intergenic 55.0%
GAGAATGCCGCTATTGGCGA+AGG + chr6_1:34541996-34542015 None:intergenic 55.0%
TCGCCAATAGCGGCATTCTC+GGG - chr6_1:34541996-34542015 Msa0883460:CDS 55.0%
GAACCCGAGAATGCCGCTAT+TGG + chr6_1:34542002-34542021 None:intergenic 55.0%
GGCATTCTCGGGTTCTACAG+CGG - chr6_1:34542007-34542026 Msa0883460:CDS 55.0%
GCATTCTCGGGTTCTACAGC+GGG - chr6_1:34542008-34542027 Msa0883460:CDS 55.0%
TTCCCCAACGCCCCTGAAAT+CGG + chr6_1:34542145-34542164 None:intergenic 55.0%
GATAACGCAGCGGATGCAGA+CGG - chr6_1:34542201-34542220 Msa0883460:CDS 55.0%
ATAACGCAGCGGATGCAGAC+GGG - chr6_1:34542202-34542221 Msa0883460:CDS 55.0%
CCGGTGCAGAGTGTGATTTG+TGG - chr6_1:34542406-34542425 Msa0883460:CDS 55.0%
! GAGTGTGATTTGTGGGGCGT+TGG - chr6_1:34542414-34542433 Msa0883460:CDS 55.0%
!! TGTGATTTGTGGGGCGTTGG+CGG - chr6_1:34542417-34542436 Msa0883460:CDS 55.0%
!! GGGTGGGTTGGTTTGACTAG+AGG - chr6_1:34542586-34542605 Msa0883460:CDS 55.0%
! AAAGGGGTTTGGTTGGACCG+GGG + chr6_1:34541805-34541824 None:intergenic 55.0%
TGCGCGTTCGAAGACGGATA+GGG + chr6_1:34541834-34541853 None:intergenic 55.0%
ATGCGCGTTCGAAGACGGAT+AGG + chr6_1:34541835-34541854 None:intergenic 55.0%
ACAGGCGTAGGTGAATGCTC+CGG + chr6_1:34541885-34541904 None:intergenic 55.0%
TGTGTCGAGAGGATGGAGAC+AGG + chr6_1:34541903-34541922 None:intergenic 55.0%
! GCCGCTATTGGCGAAGGTTT+TGG + chr6_1:34541990-34542009 None:intergenic 55.0%
GAGAATGCCGCTATTGGCGA+AGG + chr6_1:34541996-34542015 None:intergenic 55.0%
TCGCCAATAGCGGCATTCTC+GGG - chr6_1:34541996-34542015 Msa0883460:CDS 55.0%
GAACCCGAGAATGCCGCTAT+TGG + chr6_1:34542002-34542021 None:intergenic 55.0%
GGCATTCTCGGGTTCTACAG+CGG - chr6_1:34542007-34542026 Msa0883460:CDS 55.0%
GCATTCTCGGGTTCTACAGC+GGG - chr6_1:34542008-34542027 Msa0883460:CDS 55.0%
TTCCCCAACGCCCCTGAAAT+CGG + chr6_1:34542145-34542164 None:intergenic 55.0%
GATAACGCAGCGGATGCAGA+CGG - chr6_1:34542201-34542220 Msa0883460:CDS 55.0%
ATAACGCAGCGGATGCAGAC+GGG - chr6_1:34542202-34542221 Msa0883460:CDS 55.0%
CCGGTGCAGAGTGTGATTTG+TGG - chr6_1:34542406-34542425 Msa0883460:CDS 55.0%
! GAGTGTGATTTGTGGGGCGT+TGG - chr6_1:34542414-34542433 Msa0883460:CDS 55.0%
!! TGTGATTTGTGGGGCGTTGG+CGG - chr6_1:34542417-34542436 Msa0883460:CDS 55.0%
!! GGGTGGGTTGGTTTGACTAG+AGG - chr6_1:34542586-34542605 Msa0883460:CDS 55.0%
! GGGGTTGAACCGGGTTGAGT+CGG + chr6_1:34541783-34541802 None:intergenic 60.0%
! AAGGGGTTTGGTTGGACCGG+GGG + chr6_1:34541804-34541823 None:intergenic 60.0%
GAGAGGATGGAGACAGGCGT+AGG + chr6_1:34541897-34541916 None:intergenic 60.0%
!! TGTCGGTTCGACGGCTTCCT+CGG - chr6_1:34542045-34542064 Msa0883460:CDS 60.0%
! TCCTCCGATTTCAGGGGCGT+TGG - chr6_1:34542138-34542157 Msa0883460:CDS 60.0%
!! CCTCCGATTTCAGGGGCGTT+GGG - chr6_1:34542139-34542158 Msa0883460:CDS 60.0%
!! CTCCGATTTCAGGGGCGTTG+GGG - chr6_1:34542140-34542159 Msa0883460:CDS 60.0%
!! GTGATTTGTGGGGCGTTGGC+GGG - chr6_1:34542418-34542437 Msa0883460:CDS 60.0%
!! TGATTTGTGGGGCGTTGGCG+GGG - chr6_1:34542419-34542438 Msa0883460:CDS 60.0%
! GAAGACGAGGCTGATGACGC+AGG - chr6_1:34542480-34542499 Msa0883460:CDS 60.0%
GATGACGCAGGCGAGGAATG+AGG - chr6_1:34542492-34542511 Msa0883460:CDS 60.0%
AGGCGAGGAATGAGGCGGTT+GGG - chr6_1:34542500-34542519 Msa0883460:CDS 60.0%
GAGGAATGAGGCGGTTGGGA+AGG - chr6_1:34542504-34542523 Msa0883460:CDS 60.0%
TGAGGCGGTTGGGAAGGTTG+CGG - chr6_1:34542510-34542529 Msa0883460:CDS 60.0%
! GGGGTTGAACCGGGTTGAGT+CGG + chr6_1:34541783-34541802 None:intergenic 60.0%
! AAGGGGTTTGGTTGGACCGG+GGG + chr6_1:34541804-34541823 None:intergenic 60.0%
GAGAGGATGGAGACAGGCGT+AGG + chr6_1:34541897-34541916 None:intergenic 60.0%
!! TGTCGGTTCGACGGCTTCCT+CGG - chr6_1:34542045-34542064 Msa0883460:CDS 60.0%
! TCCTCCGATTTCAGGGGCGT+TGG - chr6_1:34542138-34542157 Msa0883460:CDS 60.0%
!! CCTCCGATTTCAGGGGCGTT+GGG - chr6_1:34542139-34542158 Msa0883460:CDS 60.0%
!! CTCCGATTTCAGGGGCGTTG+GGG - chr6_1:34542140-34542159 Msa0883460:CDS 60.0%
!! GTGATTTGTGGGGCGTTGGC+GGG - chr6_1:34542418-34542437 Msa0883460:CDS 60.0%
!! TGATTTGTGGGGCGTTGGCG+GGG - chr6_1:34542419-34542438 Msa0883460:CDS 60.0%
! GAAGACGAGGCTGATGACGC+AGG - chr6_1:34542480-34542499 Msa0883460:CDS 60.0%
GATGACGCAGGCGAGGAATG+AGG - chr6_1:34542492-34542511 Msa0883460:CDS 60.0%
AGGCGAGGAATGAGGCGGTT+GGG - chr6_1:34542500-34542519 Msa0883460:CDS 60.0%
GAGGAATGAGGCGGTTGGGA+AGG - chr6_1:34542504-34542523 Msa0883460:CDS 60.0%
TGAGGCGGTTGGGAAGGTTG+CGG - chr6_1:34542510-34542529 Msa0883460:CDS 60.0%
TCAACCCGGTTCAACCCCCC+CGG - chr6_1:34541785-34541804 Msa0883460:CDS 65.0%
TTGGACCGGGGGGGTTGAAC+CGG + chr6_1:34541793-34541812 None:intergenic 65.0%
! AGGGGTTTGGTTGGACCGGG+GGG + chr6_1:34541803-34541822 None:intergenic 65.0%
GAACGCGCATTCATCGGCGC+AGG - chr6_1:34541845-34541864 Msa0883460:CDS 65.0%
GCATTCATCGGCGCAGGTGC+CGG - chr6_1:34541851-34541870 Msa0883460:CDS 65.0%
GAATGCTCCGGCGATTCCGC+CGG + chr6_1:34541873-34541892 None:intergenic 65.0%
CCCAACGCCCCTGAAATCGG+AGG + chr6_1:34542142-34542161 None:intergenic 65.0%
CGGATGCAGACGGGTGCGAA+GGG - chr6_1:34542211-34542230 Msa0883460:CDS 65.0%
GGATGCAGACGGGTGCGAAG+GGG - chr6_1:34542212-34542231 Msa0883460:CDS 65.0%
!! GATTTGTGGGGCGTTGGCGG+GGG - chr6_1:34542420-34542439 Msa0883460:CDS 65.0%
GACGCAGGCGAGGAATGAGG+CGG - chr6_1:34542495-34542514 Msa0883460:CDS 65.0%
CAGGCGAGGAATGAGGCGGT+TGG - chr6_1:34542499-34542518 Msa0883460:CDS 65.0%
TCAACCCGGTTCAACCCCCC+CGG - chr6_1:34541785-34541804 Msa0883460:CDS 65.0%
TTGGACCGGGGGGGTTGAAC+CGG + chr6_1:34541793-34541812 None:intergenic 65.0%
! AGGGGTTTGGTTGGACCGGG+GGG + chr6_1:34541803-34541822 None:intergenic 65.0%
GAACGCGCATTCATCGGCGC+AGG - chr6_1:34541845-34541864 Msa0883460:CDS 65.0%
GCATTCATCGGCGCAGGTGC+CGG - chr6_1:34541851-34541870 Msa0883460:CDS 65.0%
GAATGCTCCGGCGATTCCGC+CGG + chr6_1:34541873-34541892 None:intergenic 65.0%
CCCAACGCCCCTGAAATCGG+AGG + chr6_1:34542142-34542161 None:intergenic 65.0%
CGGATGCAGACGGGTGCGAA+GGG - chr6_1:34542211-34542230 Msa0883460:CDS 65.0%
GGATGCAGACGGGTGCGAAG+GGG - chr6_1:34542212-34542231 Msa0883460:CDS 65.0%
!! GATTTGTGGGGCGTTGGCGG+GGG - chr6_1:34542420-34542439 Msa0883460:CDS 65.0%
GACGCAGGCGAGGAATGAGG+CGG - chr6_1:34542495-34542514 Msa0883460:CDS 65.0%
CAGGCGAGGAATGAGGCGGT+TGG - chr6_1:34542499-34542518 Msa0883460:CDS 65.0%
TGGACCGGGGGGGTTGAACC+GGG + chr6_1:34541792-34541811 None:intergenic 70.0%
! GGGGTTTGGTTGGACCGGGG+GGG + chr6_1:34541802-34541821 None:intergenic 70.0%
!! TTCATCGGCGCAGGTGCCGG+CGG - chr6_1:34541854-34541873 Msa0883460:CDS 70.0%
GCGGATGCAGACGGGTGCGA+AGG - chr6_1:34542210-34542229 Msa0883460:CDS 70.0%
!! GGCGTTGGCGGGGGCGATAT+CGG - chr6_1:34542429-34542448 Msa0883460:CDS 70.0%
! CGAGGCTGATGACGCAGGCG+AGG - chr6_1:34542485-34542504 Msa0883460:CDS 70.0%
GGCGGTTGGGAAGGTTGCGG+AGG - chr6_1:34542513-34542532 Msa0883460:CDS 70.0%
TGGACCGGGGGGGTTGAACC+GGG + chr6_1:34541792-34541811 None:intergenic 70.0%
! GGGGTTTGGTTGGACCGGGG+GGG + chr6_1:34541802-34541821 None:intergenic 70.0%
!! TTCATCGGCGCAGGTGCCGG+CGG - chr6_1:34541854-34541873 Msa0883460:CDS 70.0%
GCGGATGCAGACGGGTGCGA+AGG - chr6_1:34542210-34542229 Msa0883460:CDS 70.0%
!! GGCGTTGGCGGGGGCGATAT+CGG - chr6_1:34542429-34542448 Msa0883460:CDS 70.0%
! CGAGGCTGATGACGCAGGCG+AGG - chr6_1:34542485-34542504 Msa0883460:CDS 70.0%
GGCGGTTGGGAAGGTTGCGG+AGG - chr6_1:34542513-34542532 Msa0883460:CDS 70.0%
!! GCAGGTGCCGGCGGAATCGC+CGG - chr6_1:34541863-34541882 Msa0883460:CDS 75.0%
!! GCAGGTGCCGGCGGAATCGC+CGG - chr6_1:34541863-34541882 Msa0883460:CDS 75.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 34541650 34542753 34541650 ID=Msa0883460;Name=Msa0883460
chr6_1 mRNA 34541650 34542753 34541650 ID=Msa0883460-mRNA-1;Parent=Msa0883460;Name=Msa0883460-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|-1|0|1|-1|1|1|0|367
chr6_1 exon 34541650 34542753 34541650 ID=Msa0883460-mRNA-1:exon:8401;Parent=Msa0883460-mRNA-1
chr6_1 CDS 34541650 34542753 34541650 ID=Msa0883460-mRNA-1:cds;Parent=Msa0883460-mRNA-1
Gene Sequence

>Msa0883460

ATGGATTCCAACATCTCATCCTCTCTCACTCTTCCATCTCCAAAACCAAACCATCTCTCATTCCATTTCAATCTCAATGGACTCATCATCACTCTCACTAACCCAAACTCAAACCCCTTCGCTTCAATCTCCGACTCAACCCGGTTCAACCCCCCCGGTCCAACCAAACCCCTTTTCAAAACCCTATCCGTCTTCGAACGCGCATTCATCGGCGCAGGTGCCGGCGGAATCGCCGGAGCATTCACCTACGCCTGTCTCCATCCTCTCGACACAATCAAAACCAAAATGCAAACCAAAGGCGCTTCGCAAATTTACAAAAATGCCCTCGACGCAGTTTCCAAAACCTTCGCCAATAGCGGCATTCTCGGGTTCTACAGCGGGTTTTCAGCAGTTGTTGTCGGTTCGACGGCTTCCTCGGCTGTTTACTTTGGTAGCTGTGAGTTTGGTAAGTCATTTTTGTCGAAACAGAGTTGTCCCAAGTTTTTGATTCCTCCGATTTCAGGGGCGTTGGGGAATGTTTTGTCGTCTGCGATTATGGTTCCGAAGGAATTGATAACGCAGCGGATGCAGACGGGTGCGAAGGGGAGATCGTACGAAGTTTTGATTAAGATTTTGCAGAATGAAGGTGTTTTGGGTTTGTATAGAGGGTATTCAGCTACATTGTTGAGGAATTTGCCTGCTGGGGTTATAAGTTATTCGTCATTTGAGTATTTGAAGTTAGCGTTTATGAAGCATACGAATAAGGATTGTTTGGAGCCGGTGCAGAGTGTGATTTGTGGGGCGTTGGCGGGGGCGATATCGGCTTCCATAACTACGCCATTGGATGTTGTGAAGACGAGGCTGATGACGCAGGCGAGGAATGAGGCGGTTGGGAAGGTTGCGGAGGTTATGTATGGTGGGGTTAAGGATACTGTAAGGGAGATTTTGAAGGAAGAAGGGTGGGTTGGTTTGACTAGAGGAATGGGTCCTAGGGTTCTTCATAGTGCTTGTTTTTCGGCTTTGGGTTATTTTGCGTTTGAAACTGCTAGGGTTGCTATTTTGAATGAGTATGTTAAGAGGAAGCAATTGGAGGATGCGGATATTGTTGTTTCTAGTAGTAGTTGA
Protein sequence

>Msa0883460

MDSNISSSLTLPSPKPNHLSFHFNLNGLIITLTNPNSNPFASISDSTRFNPPGPTKPLFKTLSVFERAFIGAGAGGIAGAFTYACLHPLDTIKTKMQTKGASQIYKNALDAVSKTFANSGILGFYSGFSAVVVGSTASSAVYFGSCEFGKSFLSKQSCPKFLIPPISGALGNVLSSAIMVPKELITQRMQTGAKGRSYEVLIKILQNEGVLGLYRGYSATLLRNLPAGVISYSSFEYLKLAFMKHTNKDCLEPVQSVICGALAGAISASITTPLDVVKTRLMTQARNEAVGKVAEVMYGGVKDTVREILKEEGWVGLTRGMGPRVLHSACFSALGYFAFETARVAILNEYVKRKQLEDADIVVSSSS*