AlfalfaGEDB | Msa0607290

M. sativa cultivar zhongmu-4 / Msa0607290

KEGG: K12392
GO: GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944
PFAM: PF09066.13

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0607290	PNX94518.1	96.053	152	6	0	1	152	235	386	2.58e-101	306

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0607290	sp\|O81742\|APBLC_ARATH	68.421	152	48	0	1	152	742	893	7.77e-71	231

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0607290	A0A2K3MUM1	96.053	152	6	0	1	152	235	386	1.23e-101	306

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0607290	0.850230	1.941716e-60	-8.615850e-47
Msa0001950	Msa0607290	-0.827386	1.609667e-54	-8.615850e-47
Msa0011180	Msa0607290	-0.803622	3.193273e-49	-8.615850e-47
Msa0029540	Msa0607290	0.808666	2.768921e-50	-8.615850e-47
Msa0030310	Msa0607290	-0.806568	7.721653e-50	-8.615850e-47
Msa0032370	Msa0607290	-0.809983	1.444578e-50	-8.615850e-47
Msa0050730	Msa0607290	-0.807610	4.646789e-50	-8.615850e-47
Msa0072170	Msa0607290	-0.817862	2.645425e-52	-8.615850e-47
Msa0078000	Msa0607290	0.803428	3.503092e-49	-8.615850e-47
Msa0079250	Msa0607290	-0.821477	3.954226e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0607290	MtrunA17_Chr4g0038901	98.684	152	2	0	1	152	745	896	6.91e-103	313

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0607290	AT4G23460.2	68.421	152	48	1	152	648	799	3.86e-72	231
Msa0607290	AT4G23460.1	68.421	152	48	1	152	742	893	7.90e-72	231
Msa0607290	AT4G11380.1	68.421	152	48	1	152	743	894	1.77e-71	230
Msa0607290	AT4G11380.2	68.421	152	48	1	152	765	916	1.83e-71	231

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Find 50 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAACCAACAGCCTGTG+TGG	0.657599	4_2:+54085890	Msa0607290:CDS
AAACTGAGCTAGGCGGACCT+TGG	0.509914	4_2:-54085852	None:intergenic
AAACTTCATTTGAATCAGGA+AGG	0.528035	4_2:-54086230	None:intergenic
AAAGCGTAAGAATGCGAACC+AGG	0.519843	4_2:+54086335	Msa0607290:CDS
AACTGAGCTAGGCGGACCTT+GGG	0.475776	4_2:-54085851	None:intergenic
AACTTCATTTGAATCAGGAA+GGG	0.589379	4_2:-54086229	None:intergenic
AAGATAAATGTTGACATTTC+AGG	0.156965	4_2:-54086465	None:intergenic
AAGCCATCGAGTCTCTTCTT+AGG	0.334967	4_2:+54086490	Msa0607290:CDS
AATAAAGAATATGTTTGATG+CGG	0.626923	4_2:-54086310	None:intergenic
AATGTTGACATTTCAGGGCT+TGG	0.368312	4_2:-54086459	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAGATCAAATGAATGGAA+AGG	-	chr4_2:54085998-54086017	None:intergenic	30.0%
GTGAAAAGAGATCAAATGAA+TGG	-	chr4_2:54086003-54086022	None:intergenic	30.0%
TCACTGCAATAACATTAATG+CGG	+	chr4_2:54086019-54086038	Msa0607290:intron	30.0%
CAAGTATAAGTCATGAAAAG+TGG	-	chr4_2:54086160-54086179	None:intergenic	30.0%
AACTTCATTTGAATCAGGAA+GGG	-	chr4_2:54086232-54086251	None:intergenic	30.0%
AAACTTCATTTGAATCAGGA+AGG	-	chr4_2:54086233-54086252	None:intergenic	30.0%
TTGGAAACTTCATTTGAATC+AGG	-	chr4_2:54086237-54086256	None:intergenic	30.0%
TGATTCAAATGAAGTTTCCA+AGG	+	chr4_2:54086236-54086255	Msa0607290:CDS	30.0%
AAGAGATCAAATGAATGGAA+AGG	-	chr4_2:54085998-54086017	None:intergenic	30.0%
GTGAAAAGAGATCAAATGAA+TGG	-	chr4_2:54086003-54086022	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	54085806	54086758	54085806	ID=Msa0607290;Name=Msa0607290
chr4_2	mRNA	54085806	54086758	54085806	ID=Msa0607290-mRNA-1;Parent=Msa0607290;Name=Msa0607290-mRNA-1;_AED=0.00;_eAED=0.00;_QI=23\|1\|1\|1\|1\|1\|2\|240\|152
chr4_2	exon	54085806	54085987	54085806	ID=Msa0607290-mRNA-1:exon:13440;Parent=Msa0607290-mRNA-1
chr4_2	exon	54086219	54086758	54086219	ID=Msa0607290-mRNA-1:exon:13441;Parent=Msa0607290-mRNA-1
chr4_2	five_prime_UTR	54085806	54085828	54085806	ID=Msa0607290-mRNA-1:five_prime_utr;Parent=Msa0607290-mRNA-1
chr4_2	CDS	54085829	54085987	54085829	ID=Msa0607290-mRNA-1:cds;Parent=Msa0607290-mRNA-1
chr4_2	CDS	54086219	54086518	54086219	ID=Msa0607290-mRNA-1:cds;Parent=Msa0607290-mRNA-1
chr4_2	three_prime_UTR	54086519	54086758	54086519	ID=Msa0607290-mRNA-1:three_prime_utr;Parent=Msa0607290-mRNA-1

Gene Sequence

>Msa0607290

ATGGTTATGTTCCAGAACATGTCCCAAGGTCCGCCTAGCTCAGTTTTACAGGTTGCCTTAAAAAACAACCAACAGCCTGTGTGGTATTTCAACGATAAAATCTTATTCCAAGCATTTTTTACCGAGGATGGTAGAATGGAGCGTGCCGCTTTCCTTGAGACATGGAGGTCCCTTCCTGATTCAAATGAAGTTTCCAAGGACTTCCCTGCAATTGTAATTGGTGGTGTTGACGCAACCGTGGAACGACTGGCCGCATCAAACATATTCTTTATTGCAAAGCGTAAGAATGCGAACCAGGATGTGTTTTACTTCTCAGCTAAACTGCCTCGAGGGATACCACTTTTAATCGAACTTACCACAGTGGTTGGAAACCCTGGTGTCAAATGTGCAATCAAGACACCAAGCCCTGAAATGTCAACATTTATCTTCGAAGCCATCGAGTCTCTTCTTAGGAGTTAA

Protein sequence

>Msa0607290

MVMFQNMSQGPPSSVLQVALKNNQQPVWYFNDKILFQAFFTEDGRMERAAFLETWRSLPDSNEVSKDFPAIVIGGVDATVERLAASNIFFIAKRKNANQDVFYFSAKLPRGIPLLIELTTVVGNPGVKCAIKTPSPEMSTFIFEAIESLLRS*