AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0885180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0885180 MtrunA17_Chr2g0297261 92.746 386 28 0 1 386 21 406 0.0 748
Msa0885180 MtrunA17_Chr2g0299681 63.539 373 136 0 14 386 41 413 2.61e-179 504
Msa0885180 MtrunA17_Chr2g0329931 60.714 392 147 1 2 386 22 413 3.04e-177 499
Msa0885180 MtrunA17_Chr8g0342861 62.466 373 140 0 14 386 41 413 9.17e-177 498
Msa0885180 MtrunA17_Chr4g0070981 63.003 373 138 0 14 386 41 413 1.51e-175 495
Msa0885180 MtrunA17_Chr1g0169331 42.386 394 190 5 29 386 6 398 6.20e-105 315
Msa0885180 MtrunA17_Chr8g0342851 43.353 346 166 3 43 386 2 319 2.65e-93 282
Msa0885180 MtrunA17_Chr7g0247191 39.726 365 218 2 15 379 151 513 5.00e-91 283
Msa0885180 MtrunA17_Chr7g0247181 39.178 365 220 2 15 379 141 503 6.40e-91 283
Msa0885180 MtrunA17_Chr7g0247221 39.178 365 220 2 15 379 144 506 9.17e-91 282
Msa0885180 MtrunA17_Chr2g0330401 34.409 372 235 4 5 367 84 455 1.27e-74 240
Msa0885180 MtrunA17_Chr4g0003441 36.154 390 235 8 5 382 93 480 3.74e-73 236
Msa0885180 MtrunA17_Chr7g0270131 33.163 392 245 6 3 380 224 612 9.11e-66 223
Msa0885180 MtrunA17_Chr1g0179761 34.761 397 229 10 11 378 77 472 1.01e-65 216
Msa0885180 MtrunA17_Chr1g0149251 36.826 334 203 7 52 379 2 333 1.27e-65 212
Msa0885180 MtrunA17_Chr2g0293631 33.514 370 232 5 14 370 496 864 1.43e-65 226
Msa0885180 MtrunA17_Chr5g0442191 31.649 376 246 4 17 384 84 456 1.07e-64 216
Msa0885180 MtrunA17_Chr3g0107851 33.690 374 230 6 12 369 115 486 1.17e-64 215
Msa0885180 MtrunA17_Chr6g0483491 31.579 380 246 5 10 381 6 379 4.36e-64 211
Msa0885180 MtrunA17_Chr3g0121351 32.754 403 240 7 4 379 133 531 2.89e-63 213
Msa0885180 MtrunA17_Chr7g0236841 31.053 380 248 5 10 381 6 379 5.51e-62 205
Msa0885180 MtrunA17_Chr3g0095031 32.162 370 240 4 18 379 94 460 1.15e-61 207
Msa0885180 MtrunA17_Chr6g0449911 33.699 365 229 8 12 367 163 523 1.40e-60 207
Msa0885180 MtrunA17_Chr7g0271121 36.152 343 202 8 39 369 131 468 3.84e-59 204
Msa0885180 MtrunA17_Chr4g0076491 30.576 399 251 4 10 383 283 680 4.98e-59 203
Msa0885180 MtrunA17_Chr4g0040761 31.351 370 248 4 15 379 20 388 2.80e-58 202
Msa0885180 MtrunA17_Chr4g0063551 31.841 402 233 6 3 367 119 516 4.31e-58 200
Msa0885180 MtrunA17_Chr1g0193491 33.524 349 214 6 18 353 118 461 5.61e-58 199
Msa0885180 MtrunA17_Chr1g0176041 31.122 392 242 5 12 379 152 539 7.64e-58 198
Msa0885180 MtrunA17_Chr6g0449741 30.326 399 250 5 10 383 245 640 1.82e-57 198
Msa0885180 MtrunA17_Chr2g0277821 33.604 369 231 6 10 367 500 865 3.06e-56 199
Msa0885180 MtrunA17_Chr1g0200181 31.714 391 248 7 12 386 143 530 5.74e-56 193
Msa0885180 MtrunA17_Chr1g0157691 30.946 391 251 7 12 386 145 532 2.66e-55 191
Msa0885180 MtrunA17_Chr5g0409981 32.687 361 229 5 7 355 97 455 1.71e-54 187
Msa0885180 MtrunA17_Chr2g0310581 30.749 374 248 3 11 376 50 420 9.62e-54 185
Msa0885180 MtrunA17_Chr7g0263771 31.868 364 244 3 24 385 143 504 8.13e-52 182
Msa0885180 MtrunA17_Chr3g0098121 31.536 371 242 5 14 375 152 519 1.92e-50 180
Msa0885180 MtrunA17_Chr4g0058591 33.645 321 204 3 5 316 190 510 3.07e-50 176
Msa0885180 MtrunA17_Chr6g0461751 29.412 374 236 7 12 367 138 501 3.94e-48 171
Msa0885180 MtrunA17_Chr2g0309551 26.366 421 251 6 14 375 109 529 1.95e-45 164
Msa0885180 MtrunA17_Chr2g0300291 30.469 384 253 7 3 375 129 509 4.02e-45 165
Msa0885180 MtrunA17_Chr2g0307471 27.989 368 254 7 8 365 85 451 2.17e-43 158
Msa0885180 MtrunA17_Chr4g0062301 29.640 361 230 10 26 369 109 462 4.04e-42 155
Msa0885180 MtrunA17_Chr3g0114081 28.571 385 245 8 1 356 1 384 5.34e-42 155
Msa0885180 MtrunA17_Chr8g0347151 29.975 397 227 11 15 380 202 578 1.10e-41 155
Msa0885180 MtrunA17_Chr8g0347161 28.354 395 242 9 15 383 103 482 1.62e-41 153
Msa0885180 MtrunA17_Chr8g0347171 28.354 395 246 9 15 385 161 542 2.71e-41 154
Msa0885180 MtrunA17_Chr6g0466611 28.312 385 242 9 12 369 140 517 2.64e-40 151
Msa0885180 MtrunA17_Chr8g0386451 27.094 406 243 11 7 380 281 665 3.35e-40 151
Msa0885180 MtrunA17_Chr6g0475251 29.722 360 224 7 14 353 103 453 1.19e-37 144
Msa0885180 MtrunA17_Chr1g0204391 27.861 402 248 8 20 383 50 447 2.10e-36 139
Msa0885180 MtrunA17_Chr4g0034411 28.267 375 249 8 12 368 66 438 3.94e-36 139
Msa0885180 MtrunA17_Chr5g0443991 31.454 337 214 9 33 356 95 427 7.55e-36 139
Msa0885180 MtrunA17_Chr1g0192021 25.791 411 246 9 14 370 26 431 3.70e-35 136
Msa0885180 MtrunA17_Chr7g0236831 25.553 407 229 8 24 356 173 579 4.08e-35 137
Msa0885180 MtrunA17_Chr4g0025141 34.300 207 121 4 187 378 14 220 1.11e-32 122
Msa0885180 MtrunA17_Chr3g0137901 37.805 164 100 2 220 382 10 172 1.64e-32 120
Msa0885180 MtrunA17_Chr3g0145781 25.128 390 259 8 11 367 129 518 1.18e-27 114
Msa0885180 MtrunA17_Chr4g0025131 35.583 163 102 2 11 170 53 215 1.87e-25 104
Msa0885180 MtrunA17_Chr5g0429221 21.503 386 283 7 12 386 1 377 3.57e-24 103
Msa0885180 MtrunA17_Chr4g0074521 26.975 367 214 14 20 345 88 441 5.99e-24 103
Msa0885180 MtrunA17_Chr4g0004301 24.771 436 228 13 10 367 38 451 1.07e-23 102
Msa0885180 MtrunA17_Chr8g0349951 35.971 139 88 1 10 147 6 144 1.18e-23 96.3
Msa0885180 MtrunA17_Chr5g0434301 24.312 436 230 13 10 367 38 451 5.67e-23 100
Msa0885180 MtrunA17_Chr4g0039471 28.934 197 137 1 14 207 223 419 2.85e-22 97.8
Msa0885180 MtrunA17_Chr4g0025101 30.263 228 95 7 171 375 7 193 6.10e-21 90.5
Msa0885180 MtrunA17_Chr3g0137891 34.969 163 101 4 52 210 2 163 1.05e-20 90.1
Msa0885180 MtrunA17_Chr4g0062321 27.619 210 147 4 116 321 25 233 6.17e-19 85.5
Msa0885180 MtrunA17_Chr2g0301281 27.119 236 145 6 6 214 33 268 6.19e-18 85.5
Msa0885180 MtrunA17_Chr2g0301281 37.079 89 56 0 282 370 388 476 8.58e-16 79.0
Msa0885180 MtrunA17_Chr4g0029191 27.948 229 138 6 13 214 43 271 6.44e-18 85.5
Msa0885180 MtrunA17_Chr4g0029191 37.079 89 56 0 282 370 391 479 1.84e-15 78.2
Msa0885180 MtrunA17_Chr8g0354761 24.709 344 236 10 37 364 31 367 4.22e-14 73.6
Msa0885180 MtrunA17_Chr1g0155201 25.292 257 164 9 133 378 13 252 6.39e-14 72.4
Msa0885180 MtrunA17_Chr2g0300871 22.535 355 232 10 29 360 36 370 9.90e-14 72.8
Msa0885180 MtrunA17_Chr0c30g0494091 26.442 208 132 5 20 213 88 288 4.47e-13 70.1
Msa0885180 MtrunA17_Chr8g0377041 30.000 130 89 1 252 381 492 619 5.21e-13 70.9
Msa0885180 MtrunA17_Chr5g0402301 26.316 190 108 5 227 386 26 213 8.57e-13 67.0
Msa0885180 MtrunA17_Chr4g0058601 44.928 69 31 1 317 378 9 77 6.46e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0885180 AT3G19760.1 85.417 384 56 0 3 386 25 408 0.0 702
Msa0885180 AT1G51380.1 71.615 384 106 1 3 386 12 392 0.0 588
Msa0885180 AT3G13920.3 63.807 373 135 0 14 386 30 402 1.94e-179 504
Msa0885180 AT3G13920.1 63.807 373 135 0 14 386 40 412 2.43e-179 505
Msa0885180 AT1G54270.1 63.539 373 136 0 14 386 40 412 6.50e-179 504
Msa0885180 AT1G72730.1 62.466 373 140 0 14 386 42 414 5.51e-175 494
Msa0885180 AT3G13920.4 62.735 373 134 1 14 386 40 407 4.15e-173 489
Msa0885180 AT1G54270.2 62.466 373 135 1 14 386 40 407 8.46e-173 488
Msa0885180 AT3G13920.2 64.957 351 123 0 14 364 40 390 2.38e-169 479
Msa0885180 AT3G13920.5 64.957 351 123 0 14 364 44 394 4.47e-169 479
Msa0885180 AT1G51380.2 73.004 263 71 0 3 265 12 274 8.46e-146 414
Msa0885180 AT1G51380.4 73.874 222 58 0 3 224 12 233 7.77e-120 349
Msa0885180 AT1G51380.3 73.874 222 58 0 3 224 12 233 1.28e-119 349
Msa0885180 AT4G00660.1 39.516 372 223 2 15 386 133 502 5.62e-93 288
Msa0885180 AT4G00660.2 39.516 372 223 2 15 386 133 502 5.62e-93 288
Msa0885180 AT3G61240.2 38.172 372 228 2 15 386 126 495 9.19e-90 280
Msa0885180 AT3G61240.1 38.172 372 228 2 15 386 126 495 9.19e-90 280
Msa0885180 AT2G45810.1 38.082 365 224 2 15 379 156 518 4.25e-87 273
Msa0885180 AT1G55150.1 35.422 367 225 5 10 367 96 459 4.06e-75 241
Msa0885180 AT1G55150.2 35.422 367 225 5 10 367 121 484 6.30e-75 242
Msa0885180 AT3G53110.1 34.625 387 234 8 11 378 89 475 6.17e-74 238
Msa0885180 AT5G11170.1 35.844 385 221 7 13 382 46 419 8.06e-74 236
Msa0885180 AT5G11200.1 35.844 385 221 7 13 382 46 419 8.06e-74 236
Msa0885180 AT5G63120.2 35.989 364 227 2 10 367 162 525 2.63e-72 236
Msa0885180 AT3G01540.1 36.579 380 227 6 12 378 157 535 1.04e-68 228
Msa0885180 AT3G01540.4 36.579 380 227 6 12 378 157 535 1.25e-68 228
Msa0885180 AT3G01540.2 36.579 380 227 6 12 378 157 535 1.25e-68 228
Msa0885180 AT3G01540.3 36.579 380 227 6 12 378 157 535 1.25e-68 228
Msa0885180 AT3G06480.1 35.602 382 228 6 14 380 436 814 2.77e-66 228
Msa0885180 AT5G14610.2 34.896 384 228 8 12 378 160 538 7.53e-66 221
Msa0885180 AT5G14610.6 34.896 384 228 8 12 378 160 538 8.65e-66 221
Msa0885180 AT5G14610.5 34.896 384 228 8 12 378 168 546 8.98e-66 221
Msa0885180 AT5G11200.3 32.394 426 221 8 13 382 46 460 3.87e-65 215
Msa0885180 AT3G22310.2 32.353 374 242 4 14 379 117 487 1.56e-64 216
Msa0885180 AT3G22310.1 32.353 374 242 4 14 379 117 487 2.08e-64 216
Msa0885180 AT3G22330.1 32.468 385 227 6 14 379 105 475 3.52e-64 216
Msa0885180 AT5G11170.2 36.152 343 193 7 52 379 2 333 4.76e-64 208
Msa0885180 AT2G47330.1 33.077 390 240 8 10 385 225 607 2.97e-63 216
Msa0885180 AT5G14610.7 34.511 368 219 8 28 378 45 407 9.09e-62 207
Msa0885180 AT5G14610.3 34.511 368 219 8 28 378 45 407 9.09e-62 207
Msa0885180 AT2G33730.1 31.078 399 249 3 10 383 310 707 2.15e-61 210
Msa0885180 AT5G26742.1 34.986 363 216 8 39 386 128 485 2.45e-61 211
Msa0885180 AT5G26742.2 34.986 363 216 8 39 386 128 485 2.48e-61 211
Msa0885180 AT3G58510.1 32.997 397 244 7 4 379 140 535 5.81e-61 207
Msa0885180 AT3G58510.3 32.997 397 244 7 4 379 140 535 5.81e-61 207
Msa0885180 AT3G58510.2 32.997 397 244 7 4 379 140 535 5.81e-61 207
Msa0885180 AT5G26742.3 34.916 358 213 8 44 386 40 392 1.23e-60 207
Msa0885180 AT5G60990.1 31.726 394 242 6 4 379 3 387 2.28e-60 202
Msa0885180 AT5G14610.1 34.595 370 220 8 26 378 242 606 2.54e-60 207
Msa0885180 AT2G42520.2 32.234 394 235 7 12 379 158 545 1.69e-59 204
Msa0885180 AT2G42520.1 32.234 394 235 7 12 379 158 545 1.69e-59 204
Msa0885180 AT2G42520.3 32.234 394 235 7 12 379 158 545 1.69e-59 204
Msa0885180 AT1G77030.1 31.989 372 243 5 15 379 30 398 1.80e-59 207
Msa0885180 AT1G20920.2 32.698 367 237 5 10 367 188 553 1.31e-57 201
Msa0885180 AT3G58570.1 31.633 392 240 6 12 379 145 532 1.67e-57 198
Msa0885180 AT4G33370.1 32.308 390 245 7 12 385 96 482 8.81e-57 194
Msa0885180 AT3G09720.2 33.333 369 242 3 19 385 147 513 1.13e-56 194
Msa0885180 AT3G09720.1 33.333 369 242 3 19 385 147 513 1.13e-56 194
Msa0885180 AT5G11200.2 30.180 444 225 9 13 382 46 478 3.27e-56 192
Msa0885180 AT1G20920.4 32.698 367 237 5 10 367 526 891 9.72e-56 197
Msa0885180 AT1G20920.6 32.698 367 237 5 10 367 526 891 9.72e-56 197
Msa0885180 AT1G20920.3 32.698 367 237 5 10 367 526 891 9.72e-56 197
Msa0885180 AT1G20920.7 32.698 367 237 5 10 367 526 891 9.72e-56 197
Msa0885180 AT1G20920.5 32.698 367 237 5 10 367 526 891 9.72e-56 197
Msa0885180 AT1G20920.1 32.698 367 237 5 10 367 526 891 9.72e-56 197
Msa0885180 AT1G16280.1 31.458 391 231 11 11 381 56 429 3.56e-55 189
Msa0885180 AT5G51280.1 32.051 390 246 7 12 385 145 531 5.90e-55 191
Msa0885180 AT3G02065.3 29.381 388 255 5 12 385 109 491 2.46e-53 184
Msa0885180 AT3G02065.2 29.381 388 255 5 12 385 109 491 2.46e-53 184
Msa0885180 AT1G31970.1 32.738 336 213 4 33 355 134 469 1.07e-51 181
Msa0885180 AT5G63120.1 33.546 313 202 2 10 316 162 474 1.24e-51 179
Msa0885180 AT5G63120.3 33.546 313 202 2 10 316 162 474 1.25e-51 179
Msa0885180 AT5G63120.4 33.546 313 202 2 10 316 162 474 1.25e-51 179
Msa0885180 AT5G63120.5 33.546 313 202 2 10 316 162 474 1.25e-51 179
Msa0885180 AT1G28180.1 32.938 337 212 5 43 369 3 335 1.20e-50 174
Msa0885180 AT3G06480.2 34.062 320 200 5 14 325 436 752 1.67e-50 181
Msa0885180 AT5G14610.4 32.432 333 214 7 12 336 168 497 1.08e-49 175
Msa0885180 AT4G16630.1 31.579 380 253 4 3 375 156 535 6.63e-49 177
Msa0885180 AT1G12770.2 27.208 419 237 7 14 369 111 524 8.40e-49 173
Msa0885180 AT1G12770.1 27.208 419 237 7 14 369 111 524 8.40e-49 173
Msa0885180 AT3G02065.1 29.609 358 233 5 42 385 2 354 1.67e-48 168
Msa0885180 AT5G63630.1 28.358 402 245 8 11 385 52 437 9.46e-48 170
Msa0885180 AT3G09620.1 30.811 370 211 8 10 367 393 729 1.49e-47 174
Msa0885180 AT3G09620.2 30.811 370 211 8 10 367 394 730 1.69e-47 174
Msa0885180 AT5G63630.2 28.358 402 245 8 11 385 246 631 7.22e-46 167
Msa0885180 AT3G18600.1 29.700 367 249 6 7 365 83 448 1.39e-45 165
Msa0885180 AT5G08620.1 29.056 413 242 11 4 385 71 463 2.46e-45 164
Msa0885180 AT1G71370.1 30.220 364 235 8 20 365 23 385 5.13e-45 163
Msa0885180 AT5G08610.1 28.986 414 245 9 5 385 368 765 6.91e-45 166
Msa0885180 AT5G05450.1 29.609 358 227 7 23 356 26 382 1.35e-43 160
Msa0885180 AT5G65900.1 28.767 365 252 4 9 365 150 514 8.87e-43 158
Msa0885180 AT5G62190.1 30.423 378 227 8 32 386 115 479 9.63e-42 155
Msa0885180 AT5G54910.1 30.376 372 239 12 12 369 70 435 4.52e-40 151
Msa0885180 AT1G63250.1 28.148 405 247 9 4 380 319 707 7.36e-40 151
Msa0885180 AT2G07750.1 27.586 406 248 10 4 380 366 754 8.27e-39 148
Msa0885180 AT2G40700.1 25.983 458 258 12 8 384 25 482 5.64e-36 139
Msa0885180 AT4G09730.1 25.260 384 259 6 10 369 109 488 9.16e-36 138
Msa0885180 AT4G34910.1 26.812 414 246 10 14 373 47 457 1.73e-34 135
Msa0885180 AT5G19210.2 27.202 386 236 12 20 368 83 460 8.19e-32 125
Msa0885180 AT1G71280.2 29.487 312 180 9 20 318 24 308 4.52e-28 113
Msa0885180 AT3G06980.1 25.381 394 258 9 8 367 369 760 1.28e-27 115
Msa0885180 AT1G71280.1 29.260 311 182 9 20 318 24 308 1.63e-27 113
Msa0885180 AT4G15850.1 23.765 425 227 12 14 362 45 448 4.75e-24 103
Msa0885180 AT5G19210.1 25.564 266 159 10 134 368 46 303 3.75e-15 76.3
Msa0885180 AT5G19210.3 25.564 266 159 10 134 368 46 303 3.75e-15 76.3
Msa0885180 AT1G27880.1 23.885 381 243 12 8 367 247 601 1.16e-14 76.3
Msa0885180 AT1G27880.2 23.885 381 243 12 8 367 247 601 1.18e-14 76.3
Msa0885180 AT3G16840.1 25.381 197 123 4 12 184 189 385 1.75e-14 75.9
Msa0885180 AT3G16840.1 31.356 118 78 1 246 360 493 610 9.59e-14 73.6
Msa0885180 AT3G16840.2 25.381 197 123 4 12 184 190 386 1.78e-14 75.9
Msa0885180 AT3G16840.2 31.356 118 78 1 246 360 494 611 9.60e-14 73.6
Msa0885180 AT4G35740.1 21.728 382 255 12 13 368 13 376 1.16e-11 67.0

Find 82 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTGCATCTTTCGAGAATA+TGG 0.210189 6_1:-40304402 Msa0885180:CDS
AAGAGAAAGAGATGCAATTA+TGG 0.245902 6_1:-40302972 Msa0885180:CDS
ATTGGCCGTTCTGGACGTTT+TGG 0.252537 6_1:-40301985 Msa0885180:CDS
ATGTAGAGCTCTCGATTATT+TGG 0.280901 6_1:+40302015 None:intergenic
ATTCATCGAATTGGCCGTTC+TGG 0.332607 6_1:-40301994 Msa0885180:CDS
TACGTTGCCTCGAGAAATTT+TGG 0.334761 6_1:-40303461 Msa0885180:CDS
TGCTGATAACAACAGATGTT+TGG 0.363013 6_1:-40302922 Msa0885180:CDS
ATTGCATCTCTTTCTCTTTG+AGG 0.376417 6_1:+40302977 None:intergenic
GAGCAATGACGTCGCGGCCC+TGG 0.378821 6_1:+40304291 None:intergenic
TGTGTCTCCCACGCGGGAAC+TGG 0.380636 6_1:-40304019 Msa0885180:CDS
GTCATTGCTCAGGCTCAATC+TGG 0.384667 6_1:-40304278 Msa0885180:CDS
GAGCTCTACATTCATCGAAT+TGG 0.386139 6_1:-40302003 Msa0885180:CDS
GAGTTTGTGACATGATAAAA+AGG 0.388601 6_1:-40303855 Msa0885180:CDS
AGAGAAAGAGATGCAATTAT+GGG 0.391866 6_1:-40302971 Msa0885180:CDS
ATAAGATCAGCAACATTCAT+TGG 0.404488 6_1:+40301758 None:intergenic
GAGAAAGTTATATCTGCTAT+TGG 0.414565 6_1:-40303985 Msa0885180:CDS
GCTGATAACAACAGATGTTT+GGG 0.425669 6_1:-40302921 Msa0885180:CDS
TGCGATTGCACCTATCCTCC+AGG 0.430617 6_1:-40304309 Msa0885180:CDS
ATTGCATCTTTCGAGAATAT+GGG 0.433255 6_1:-40304401 Msa0885180:CDS
CACGGAGCTCACGTAGTGTC+TGG 0.454899 6_1:-40303889 Msa0885180:CDS
CCATCTAATTACAGGGCATA+AGG 0.455401 6_1:-40303298 Msa0885180:intron
AAAGTGTAGGCGAAGACATA+AGG 0.459571 6_1:-40303921 Msa0885180:CDS
GCAAACAGTGAGAGCAATCA+TGG 0.460588 6_1:+40304241 None:intergenic
ATCAAGACAACTTGGAGATC+GGG 0.461170 6_1:+40303490 None:intergenic
GCTCAGGCTCAATCTGGAAC+TGG 0.468328 6_1:-40304272 Msa0885180:CDS
CGAGCCCATGCTTGCATAGG+AGG 0.470725 6_1:-40303946 Msa0885180:CDS
CTGCGTGGAATCTATCAATA+CGG 0.483827 6_1:-40304362 Msa0885180:CDS
ACGTCGCGGCCCTGGAGGAT+AGG 0.495659 6_1:+40304299 None:intergenic
AGCTATCAAGTTGCTTGTGC+TGG 0.499944 6_1:-40303815 Msa0885180:intron
AATCAAGACAACTTGGAGAT+CGG 0.501426 6_1:+40303489 None:intergenic
TTTGCCTCCTATGCAAGCAT+GGG 0.511843 6_1:+40303942 None:intergenic
GTCACCATGCATTGAGGAGA+CGG 0.516149 6_1:+40303003 None:intergenic
GGACGGAGGTATCGATAAGA+TGG 0.518084 6_1:+40304219 None:intergenic
ACAACAGATGTTTGGGCTCG+TGG 0.521521 6_1:-40302914 Msa0885180:CDS
TCGTGGCCTTGATGTACAGC+AGG 0.521836 6_1:-40302897 Msa0885180:intron
CACGTAGTGTCTGGAACACC+TGG 0.534536 6_1:-40303880 Msa0885180:CDS
TATAACTTTCTCAGTTTGTG+AGG 0.539616 6_1:+40303996 None:intergenic
TTGCCGTTGAAAGGGAGGAC+TGG 0.550243 6_1:-40303265 Msa0885180:CDS
AACTTGCCTGCTGTACATCA+AGG 0.558036 6_1:+40302891 None:intergenic
AAAGTTATATCTGCTATTGG+CGG 0.558436 6_1:-40303982 Msa0885180:CDS
ATCTGTTGTTATCAGCACTC+TGG 0.558524 6_1:+40302928 None:intergenic
TGATATTCTTACCATCACTC+AGG 0.562078 6_1:-40303216 Msa0885180:CDS
CTTCCAGTCCTCCCTTTCAA+CGG 0.566897 6_1:+40303262 None:intergenic
TAGCGGAAATCAAGACAACT+TGG 0.567455 6_1:+40303482 None:intergenic
TTTCTGTAACACAAAGCGAA+AGG 0.571619 6_1:-40303186 Msa0885180:intron
AGAGCTCTCGATTATTTGGA+AGG 0.575139 6_1:+40302019 None:intergenic
GTCATCTCCAAAATTTCTCG+AGG 0.575420 6_1:+40303454 None:intergenic
AGGCATGTCACCATGCATTG+AGG 0.576582 6_1:+40302997 None:intergenic
GAAAATAACAGCCTGAGTGA+TGG 0.589122 6_1:+40303205 None:intergenic
ATACGAGCCCATGCTTGCAT+AGG 0.589575 6_1:-40303949 Msa0885180:CDS
ATTATGGGAGAATTTCGTGC+TGG 0.593748 6_1:-40302956 Msa0885180:CDS
TGTGAGGCCAGTTCCCGCGT+GGG 0.594222 6_1:+40304012 None:intergenic
TTGCATCTTTCGAGAATATG+GGG 0.596713 6_1:-40304400 Msa0885180:CDS
TTGTGAGGCCAGTTCCCGCG+TGG 0.598017 6_1:+40304011 None:intergenic
ACGTGACGAATTAACGTTGG+AGG 0.598891 6_1:-40303392 Msa0885180:intron
GAAGATGGAGTTCGAGACAA+CGG 0.598987 6_1:-40304438 None:intergenic
ATCATGTCACAAACTCGACC+AGG 0.603604 6_1:+40303862 None:intergenic
ATGGGAGAATTTCGTGCTGG+AGG 0.605257 6_1:-40302953 Msa0885180:CDS
TGCATAGGAGGCAAAAGTGT+AGG 0.605706 6_1:-40303934 Msa0885180:CDS
TTTAATTGTGTCTCCCACGC+GGG 0.610189 6_1:-40304025 Msa0885180:CDS
CTGATGAAATGCTTAGCAGA+GGG 0.618009 6_1:-40303552 Msa0885180:CDS
AAGACAACTTGGAGATCGGG+AGG 0.621470 6_1:+40303493 None:intergenic
TTCACCGTCTCCTCAATGCA+TGG 0.622726 6_1:-40303007 Msa0885180:CDS
GACATAAGGCAACTTGAACA+CGG 0.629542 6_1:-40303907 Msa0885180:CDS
TTCGCCCAAAACGTCCAGAA+CGG 0.631007 6_1:+40301980 None:intergenic
AAAACGTGACGAATTAACGT+TGG 0.633814 6_1:-40303395 Msa0885180:CDS
ATGTACTCACTCTCGGACGG+AGG 0.634898 6_1:+40304205 None:intergenic
CAATGACGTCGCGGCCCTGG+AGG 0.638520 6_1:+40304294 None:intergenic
GCGATTGCACCTATCCTCCA+GGG 0.639212 6_1:-40304308 Msa0885180:CDS
TCTGATGAAATGCTTAGCAG+AGG 0.642998 6_1:-40303553 Msa0885180:CDS
AAGATGTACTCACTCTCGGA+CGG 0.644954 6_1:+40304202 None:intergenic
CTTTAATTGTGTCTCCCACG+CGG 0.646289 6_1:-40304026 Msa0885180:CDS
ATAAAAGACGATTTGCTGCG+TGG 0.651840 6_1:-40304377 Msa0885180:CDS
GCACGCTGTTGAATCGCCGA+CGG 0.662677 6_1:+40304329 None:intergenic
GAGCCTGAGCAATGACGTCG+CGG 0.666235 6_1:+40304285 None:intergenic
ATGGAGTTCGAGACAACGGA+GGG 0.672934 6_1:-40304434 Msa0885180:CDS
AGACAACTTGGAGATCGGGA+GGG 0.680527 6_1:+40303494 None:intergenic
GATGGAGTTCGAGACAACGG+AGG 0.683107 6_1:-40304435 Msa0885180:CDS
AATTTCTCGAGGCAACGTAG+CGG 0.683757 6_1:+40303465 None:intergenic
ATACGGTTTCGAGAATCCGT+CGG 0.683964 6_1:-40304345 Msa0885180:CDS
AGTTTATGACAGATCCCGTG+AGG 0.729356 6_1:-40303426 Msa0885180:CDS
AACAGTGAGAGCAATCATGG+AGG 0.739002 6_1:+40304244 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGGTAAATGAAAATTATAA+AGG - chr6_1:40303021-40303040 Msa0885180:CDS 15.0%
!! ATTGCTTATTACTTATTATT+TGG - chr6_1:40304302-40304321 Msa0885180:CDS 15.0%
!!! GTTTTAATTAGGGTTTTTAA+AGG - chr6_1:40302043-40302062 Msa0885180:CDS 20.0%
!!! TGTAATTTTAGGTTGAATTA+GGG - chr6_1:40302081-40302100 Msa0885180:intron 20.0%
!! AAAGAGAAAAAACAATGAAT+AGG + chr6_1:40302411-40302430 None:intergenic 20.0%
!! AAATTAAGAGATTAATGAGT+TGG + chr6_1:40302495-40302514 None:intergenic 20.0%
!!! GAATTATGAATATGTGTTTT+CGG - chr6_1:40303442-40303461 Msa0885180:CDS 20.0%
!!! AATTTACACCAATTTTTACA+TGG - chr6_1:40303616-40303635 Msa0885180:intron 20.0%
!!! GACTATTAAAATTGATTTTG+AGG + chr6_1:40303685-40303704 None:intergenic 20.0%
!!! TACTAAAGATTGTTAGTTTA+AGG + chr6_1:40303858-40303877 None:intergenic 20.0%
!! AAAAAAATCAATGAATTGCA+GGG + chr6_1:40304067-40304086 None:intergenic 20.0%
!! TAGCAGTATAGTGTAATTTT+AGG - chr6_1:40302070-40302089 Msa0885180:intron 25.0%
!!! GTGTAATTTTAGGTTGAATT+AGG - chr6_1:40302080-40302099 Msa0885180:intron 25.0%
!! TTTCTCTTTCTTTTTCTTGT+CGG - chr6_1:40302422-40302441 Msa0885180:intron 25.0%
! ATATGGTTTATGATGCATTA+TGG + chr6_1:40302466-40302485 None:intergenic 25.0%
! AATGCATCATAAACCATATT+TGG - chr6_1:40302467-40302486 Msa0885180:intron 25.0%
!! GTTTCTCTTATAGTTTTTCT+AGG - chr6_1:40302524-40302543 Msa0885180:intron 25.0%
! AAATATATCATAGAGCACAA+AGG + chr6_1:40302846-40302865 None:intergenic 25.0%
! GAAAATTATAAAGGACTTGT+AGG - chr6_1:40303030-40303049 Msa0885180:CDS 25.0%
!! TTTATATGTCCTTTTCAAAC+AGG - chr6_1:40303123-40303142 Msa0885180:intron 25.0%
! ATTCACATAGCTTAAATATC+TGG - chr6_1:40303405-40303424 Msa0885180:CDS 25.0%
!! TATAATTCCGTCTATGTTTT+GGG + chr6_1:40303753-40303772 None:intergenic 25.0%
! TATACATAAAAACGCAACAA+TGG + chr6_1:40303944-40303963 None:intergenic 25.0%
! CAAAAAAATCAATGAATTGC+AGG + chr6_1:40304068-40304087 None:intergenic 25.0%
!!! CTGCAATTCATTGATTTTTT+TGG - chr6_1:40304066-40304085 Msa0885180:intron 25.0%
!!! TGATTTTTTTGGATTGTAGA+CGG - chr6_1:40304077-40304096 Msa0885180:intron 25.0%
AATTGCATCTTTCGAGAATA+TGG - chr6_1:40301786-40301805 Msa0885180:CDS 30.0%
ATTGCATCTTTCGAGAATAT+GGG - chr6_1:40301787-40301806 Msa0885180:CDS 30.0%
TATAACTTTCTCAGTTTGTG+AGG + chr6_1:40302195-40302214 None:intergenic 30.0%
GAGAAAGTTATATCTGCTAT+TGG - chr6_1:40302203-40302222 Msa0885180:intron 30.0%
AAAGTTATATCTGCTATTGG+CGG - chr6_1:40302206-40302225 Msa0885180:intron 30.0%
GAGTTTGTGACATGATAAAA+AGG - chr6_1:40302333-40302352 Msa0885180:intron 30.0%
! TAATGAGTTGGATCCAAATA+TGG + chr6_1:40302483-40302502 None:intergenic 30.0%
! TTAATTCGTCACGTTTTACA+AGG + chr6_1:40302790-40302809 None:intergenic 30.0%
GTGCTCTATGATATATTTAC+CGG - chr6_1:40302848-40302867 Msa0885180:intron 30.0%
!!! AATTTTTTGTTGCCGTTGAA+AGG - chr6_1:40302914-40302933 Msa0885180:CDS 30.0%
!!! ATTTTTTGTTGCCGTTGAAA+GGG - chr6_1:40302915-40302934 Msa0885180:CDS 30.0%
TTCTGTACTCTATTTACACA+TGG - chr6_1:40303065-40303084 Msa0885180:intron 30.0%
AAGAGAAAGAGATGCAATTA+TGG - chr6_1:40303216-40303235 Msa0885180:CDS 30.0%
AGAGAAAGAGATGCAATTAT+GGG - chr6_1:40303217-40303236 Msa0885180:CDS 30.0%
!! TTATTTGTGCCTCTAAAACA+TGG - chr6_1:40303379-40303398 Msa0885180:intron 30.0%
GACAAGTTCCATGTAAAAAT+TGG + chr6_1:40303627-40303646 None:intergenic 30.0%
GAGGCAAAGTTATTTATGTT+AGG + chr6_1:40303666-40303685 None:intergenic 30.0%
! CTATAATTCCGTCTATGTTT+TGG + chr6_1:40303754-40303773 None:intergenic 30.0%
TATTCTTATTACATCCAGCA+AGG - chr6_1:40303812-40303831 Msa0885180:intron 30.0%
! CTAATGTCGTAACATGTTTT+CGG - chr6_1:40303966-40303985 Msa0885180:CDS 30.0%
CTTATTATTTGGCCTAATCA+TGG - chr6_1:40304313-40304332 Msa0885180:CDS 30.0%
ATAAGATCAGCAACATTCAT+TGG + chr6_1:40304433-40304452 None:intergenic 30.0%
TTGCATCTTTCGAGAATATG+GGG - chr6_1:40301788-40301807 Msa0885180:CDS 35.0%
AAACAAGATGTACTCACTCT+CGG + chr6_1:40301993-40302012 None:intergenic 35.0%
! AGGGTTTCTCATGTTTTGTA+TGG - chr6_1:40302100-40302119 Msa0885180:intron 35.0%
! GGGTTTCTCATGTTTTGTAT+GGG - chr6_1:40302101-40302120 Msa0885180:intron 35.0%
GCACACTGTACATACAAAAT+TGG + chr6_1:40302139-40302158 None:intergenic 35.0%
! ATTTTGTATGTACAGTGTGC+AGG - chr6_1:40302139-40302158 Msa0885180:intron 35.0%
CTTGACACATGATTAGATGA+AGG + chr6_1:40302579-40302598 None:intergenic 35.0%
CTTCATCTAATCATGTGTCA+AGG - chr6_1:40302577-40302596 Msa0885180:intron 35.0%
AATCAAGACAACTTGGAGAT+CGG + chr6_1:40302702-40302721 None:intergenic 35.0%
AAAACGTGACGAATTAACGT+TGG - chr6_1:40302793-40302812 Msa0885180:intron 35.0%
AGGGTAACAACATCAATATC+CGG + chr6_1:40302870-40302889 None:intergenic 35.0%
TTACCCTCCATCTAATTACA+GGG - chr6_1:40302883-40302902 Msa0885180:intron 35.0%
TGATATTCTTACCATCACTC+AGG - chr6_1:40302972-40302991 Msa0885180:CDS 35.0%
TTTCTGTAACACAAAGCGAA+AGG - chr6_1:40303002-40303021 Msa0885180:CDS 35.0%
! ATATGTCCTTTTCAAACAGG+TGG - chr6_1:40303126-40303145 Msa0885180:intron 35.0%
ATTGCATCTCTTTCTCTTTG+AGG + chr6_1:40303214-40303233 None:intergenic 35.0%
TGCTGATAACAACAGATGTT+TGG - chr6_1:40303266-40303285 Msa0885180:CDS 35.0%
GCTGATAACAACAGATGTTT+GGG - chr6_1:40303267-40303286 Msa0885180:CDS 35.0%
ATTCTTACCTTCCTTACACA+AGG - chr6_1:40303331-40303350 Msa0885180:intron 35.0%
!! GTGAATTCACCATGTTTTAG+AGG + chr6_1:40303391-40303410 None:intergenic 35.0%
!! TAGAGACTAGCTTATGCATT+AGG - chr6_1:40303587-40303606 Msa0885180:intron 35.0%
TTGCTGACATGAACAAATGT+AGG - chr6_1:40303781-40303800 Msa0885180:intron 35.0%
TAGTTTAAGGAGTTGTGAAC+TGG + chr6_1:40303845-40303864 None:intergenic 35.0%
TTTCAAATGTGACTACTCAG+TGG + chr6_1:40304031-40304050 None:intergenic 35.0%
!!! TTTTTTTGGATTGTAGACGG+AGG - chr6_1:40304080-40304099 Msa0885180:intron 35.0%
ATGTAGAGCTCTCGATTATT+TGG + chr6_1:40304176-40304195 None:intergenic 35.0%
!! ATAAAAGACGATTTGCTGCG+TGG - chr6_1:40301811-40301830 Msa0885180:CDS 40.0%
CTGCGTGGAATCTATCAATA+CGG - chr6_1:40301826-40301845 Msa0885180:CDS 40.0%
AAAGTGTAGGCGAAGACATA+AGG - chr6_1:40302267-40302286 Msa0885180:intron 40.0%
GACATAAGGCAACTTGAACA+CGG - chr6_1:40302281-40302300 Msa0885180:intron 40.0%
AAGGATAGTCAGATCACAAG+AGG + chr6_1:40302560-40302579 None:intergenic 40.0%
TCTGATGAAATGCTTAGCAG+AGG - chr6_1:40302635-40302654 Msa0885180:intron 40.0%
CTGATGAAATGCTTAGCAGA+GGG - chr6_1:40302636-40302655 Msa0885180:intron 40.0%
ATCAAGACAACTTGGAGATC+GGG + chr6_1:40302701-40302720 None:intergenic 40.0%
TAGCGGAAATCAAGACAACT+TGG + chr6_1:40302709-40302728 None:intergenic 40.0%
! TACGTTGCCTCGAGAAATTT+TGG - chr6_1:40302727-40302746 Msa0885180:intron 40.0%
GTCATCTCCAAAATTTCTCG+AGG + chr6_1:40302737-40302756 None:intergenic 40.0%
! ACGTTTTACAAGGATCCTCA+CGG + chr6_1:40302780-40302799 None:intergenic 40.0%
GTTACCCTCCATCTAATTAC+AGG - chr6_1:40302882-40302901 Msa0885180:intron 40.0%
ATGCCCTGTAATTAGATGGA+GGG + chr6_1:40302889-40302908 None:intergenic 40.0%
TATGCCCTGTAATTAGATGG+AGG + chr6_1:40302890-40302909 None:intergenic 40.0%
CCTTATGCCCTGTAATTAGA+TGG + chr6_1:40302893-40302912 None:intergenic 40.0%
CCATCTAATTACAGGGCATA+AGG - chr6_1:40302890-40302909 Msa0885180:intron 40.0%
GAAAATAACAGCCTGAGTGA+TGG + chr6_1:40302986-40303005 None:intergenic 40.0%
CTCTATTTACACATGGCGAT+TGG - chr6_1:40303072-40303091 Msa0885180:intron 40.0%
! TCCTTTTCAAACAGGTGGAT+TGG - chr6_1:40303131-40303150 Msa0885180:intron 40.0%
ACCAATCCACCTGTTTGAAA+AGG + chr6_1:40303135-40303154 None:intergenic 40.0%
ATTATGGGAGAATTTCGTGC+TGG - chr6_1:40303232-40303251 Msa0885180:CDS 40.0%
ATCTGTTGTTATCAGCACTC+TGG + chr6_1:40303263-40303282 None:intergenic 40.0%
! AGTACAGAAAGCCTTGTGTA+AGG + chr6_1:40303345-40303364 None:intergenic 40.0%
! GTGCGTTTGTTTCTCTTATC+AGG - chr6_1:40304124-40304143 Msa0885180:intron 40.0%
AGAGCTCTCGATTATTTGGA+AGG + chr6_1:40304172-40304191 None:intergenic 40.0%
GAGCTCTACATTCATCGAAT+TGG - chr6_1:40304185-40304204 Msa0885180:intron 40.0%
ATACGGTTTCGAGAATCCGT+CGG - chr6_1:40301843-40301862 Msa0885180:CDS 45.0%
AACAGTGAGAGCAATCATGG+AGG + chr6_1:40301947-40301966 None:intergenic 45.0%
GCAAACAGTGAGAGCAATCA+TGG + chr6_1:40301950-40301969 None:intergenic 45.0%
AAGATGTACTCACTCTCGGA+CGG + chr6_1:40301989-40302008 None:intergenic 45.0%
CTTTAATTGTGTCTCCCACG+CGG - chr6_1:40302162-40302181 Msa0885180:intron 45.0%
TTTAATTGTGTCTCCCACGC+GGG - chr6_1:40302163-40302182 Msa0885180:intron 45.0%
TTTGCCTCCTATGCAAGCAT+GGG + chr6_1:40302249-40302268 None:intergenic 45.0%
! TTTTGCCTCCTATGCAAGCA+TGG + chr6_1:40302250-40302269 None:intergenic 45.0%
! TGCATAGGAGGCAAAAGTGT+AGG - chr6_1:40302254-40302273 Msa0885180:intron 45.0%
ATCATGTCACAAACTCGACC+AGG + chr6_1:40302329-40302348 None:intergenic 45.0%
! AGCTATCAAGTTGCTTGTGC+TGG - chr6_1:40302373-40302392 Msa0885180:intron 45.0%
AGTCAGATCACAAGAGGTAG+AGG + chr6_1:40302554-40302573 None:intergenic 45.0%
AATTTCTCGAGGCAACGTAG+CGG + chr6_1:40302726-40302745 None:intergenic 45.0%
AGTTTATGACAGATCCCGTG+AGG - chr6_1:40302762-40302781 Msa0885180:intron 45.0%
! CGTTTTACAAGGATCCTCAC+GGG + chr6_1:40302779-40302798 None:intergenic 45.0%
ACGTGACGAATTAACGTTGG+AGG - chr6_1:40302796-40302815 Msa0885180:intron 45.0%
! TTTTGTTGCCGTTGAAAGGG+AGG - chr6_1:40302918-40302937 Msa0885180:CDS 45.0%
AACTTGCCTGCTGTACATCA+AGG + chr6_1:40303300-40303319 None:intergenic 45.0%
! CAGAAAGCCTTGTGTAAGGA+AGG + chr6_1:40303341-40303360 None:intergenic 45.0%
ACCCTCACCCAAAACATAGA+CGG - chr6_1:40303743-40303762 Msa0885180:intron 45.0%
!! TCCGTCTATGTTTTGGGTGA+GGG + chr6_1:40303747-40303766 None:intergenic 45.0%
!! TTCCGTCTATGTTTTGGGTG+AGG + chr6_1:40303748-40303767 None:intergenic 45.0%
GAACTGGTGATATTCCTTGC+TGG + chr6_1:40303829-40303848 None:intergenic 45.0%
GTGACTACTCAGTGGTCATA+AGG + chr6_1:40304023-40304042 None:intergenic 45.0%
ATTCATCGAATTGGCCGTTC+TGG - chr6_1:40304194-40304213 Msa0885180:intron 45.0%
! TTGGCCTAATCATGGTTTGC+AGG - chr6_1:40304321-40304340 Msa0885180:CDS 45.0%
! TGGCCTAATCATGGTTTGCA+GGG - chr6_1:40304322-40304341 Msa0885180:CDS 45.0%
!!! ATATAATTTTAGTTTTAATT+AGG - chr6_1:40302032-40302051 Msa0885180:CDS 5.0%
!!! TATAATTTTAGTTTTAATTA+GGG - chr6_1:40302033-40302052 Msa0885180:CDS 5.0%
!!! TAAATTTTTAATTTTATTAC+AGG - chr6_1:40302607-40302626 Msa0885180:intron 5.0%
ATGGAGTTCGAGACAACGGA+GGG - chr6_1:40301754-40301773 Msa0885180:CDS 50.0%
GTCATTGCTCAGGCTCAATC+TGG - chr6_1:40301910-40301929 Msa0885180:intron 50.0%
!! GGACGGAGGTATCGATAAGA+TGG + chr6_1:40301972-40301991 None:intergenic 50.0%
ATACGAGCCCATGCTTGCAT+AGG - chr6_1:40302239-40302258 Msa0885180:intron 50.0%
AGACAACTTGGAGATCGGGA+GGG + chr6_1:40302697-40302716 None:intergenic 50.0%
AAGACAACTTGGAGATCGGG+AGG + chr6_1:40302698-40302717 None:intergenic 50.0%
CTTCCAGTCCTCCCTTTCAA+CGG + chr6_1:40302929-40302948 None:intergenic 50.0%
TTCACCGTCTCCTCAATGCA+TGG - chr6_1:40303181-40303200 Msa0885180:intron 50.0%
GTCACCATGCATTGAGGAGA+CGG + chr6_1:40303188-40303207 None:intergenic 50.0%
AGGCATGTCACCATGCATTG+AGG + chr6_1:40303194-40303213 None:intergenic 50.0%
ATGGGAGAATTTCGTGCTGG+AGG - chr6_1:40303235-40303254 Msa0885180:CDS 50.0%
ACAACAGATGTTTGGGCTCG+TGG - chr6_1:40303274-40303293 Msa0885180:CDS 50.0%
GGGTGAGGGTTTGACAAATG+CGG + chr6_1:40303733-40303752 None:intergenic 50.0%
!! ATTGGCCGTTCTGGACGTTT+TGG - chr6_1:40304203-40304222 Msa0885180:intron 50.0%
!! TTGGCCGTTCTGGACGTTTT+GGG - chr6_1:40304204-40304223 Msa0885180:intron 50.0%
TTCGCCCAAAACGTCCAGAA+CGG + chr6_1:40304211-40304230 None:intergenic 50.0%
!! TTCTGGACGTTTTGGGCGAA+AGG - chr6_1:40304211-40304230 Msa0885180:intron 50.0%
!! ACGTTTTGGGCGAAAGGTAC+TGG - chr6_1:40304217-40304236 Msa0885180:CDS 50.0%
ACGCCCTGCAAACCATGATT+AGG + chr6_1:40304328-40304347 None:intergenic 50.0%
TGCGATTGCACCTATCCTCC+AGG - chr6_1:40301879-40301898 Msa0885180:intron 55.0%
GCGATTGCACCTATCCTCCA+GGG - chr6_1:40301880-40301899 Msa0885180:intron 55.0%
! GCTCAGGCTCAATCTGGAAC+TGG - chr6_1:40301916-40301935 Msa0885180:intron 55.0%
ATGTACTCACTCTCGGACGG+AGG + chr6_1:40301986-40302005 None:intergenic 55.0%
! CACGTAGTGTCTGGAACACC+TGG - chr6_1:40302308-40302327 Msa0885180:intron 55.0%
TTGCCGTTGAAAGGGAGGAC+TGG - chr6_1:40302923-40302942 Msa0885180:CDS 55.0%
! TCGTGGCCTTGATGTACAGC+AGG - chr6_1:40303291-40303310 Msa0885180:intron 55.0%
GCACGCTGTTGAATCGCCGA+CGG + chr6_1:40301862-40301881 None:intergenic 60.0%
GAGCCTGAGCAATGACGTCG+CGG + chr6_1:40301906-40301925 None:intergenic 60.0%
CGAGCCCATGCTTGCATAGG+AGG - chr6_1:40302242-40302261 Msa0885180:intron 60.0%
CACGGAGCTCACGTAGTGTC+TGG - chr6_1:40302299-40302318 Msa0885180:intron 60.0%
TGTGTCTCCCACGCGGGAAC+TGG - chr6_1:40302169-40302188 Msa0885180:intron 65.0%
TGTGAGGCCAGTTCCCGCGT+GGG + chr6_1:40302179-40302198 None:intergenic 65.0%
TTGTGAGGCCAGTTCCCGCG+TGG + chr6_1:40302180-40302199 None:intergenic 65.0%
ACGTCGCGGCCCTGGAGGAT+AGG + chr6_1:40301892-40301911 None:intergenic 70.0%
CAATGACGTCGCGGCCCTGG+AGG + chr6_1:40301897-40301916 None:intergenic 70.0%
GAGCAATGACGTCGCGGCCC+TGG + chr6_1:40301900-40301919 None:intergenic 70.0%
GGGCCGCGACGTCATTGCTC+AGG - chr6_1:40301900-40301919 Msa0885180:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 40301754 40304456 40301754 ID=Msa0885180;Name=Msa0885180
chr6_1 mRNA 40301754 40304456 40301754 ID=Msa0885180-mRNA-1;Parent=Msa0885180;Name=Msa0885180-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|7|0|386
chr6_1 exon 40304215 40304456 40304215 ID=Msa0885180-mRNA-1:exon:9130;Parent=Msa0885180-mRNA-1
chr6_1 exon 40303816 40304056 40303816 ID=Msa0885180-mRNA-1:exon:9129;Parent=Msa0885180-mRNA-1
chr6_1 exon 40303393 40303581 40303393 ID=Msa0885180-mRNA-1:exon:9128;Parent=Msa0885180-mRNA-1
chr6_1 exon 40303187 40303306 40303187 ID=Msa0885180-mRNA-1:exon:9127;Parent=Msa0885180-mRNA-1
chr6_1 exon 40302898 40303065 40302898 ID=Msa0885180-mRNA-1:exon:9126;Parent=Msa0885180-mRNA-1
chr6_1 exon 40301978 40302064 40301978 ID=Msa0885180-mRNA-1:exon:9125;Parent=Msa0885180-mRNA-1
chr6_1 exon 40301754 40301867 40301754 ID=Msa0885180-mRNA-1:exon:9124;Parent=Msa0885180-mRNA-1
chr6_1 CDS 40304215 40304456 40304215 ID=Msa0885180-mRNA-1:cds;Parent=Msa0885180-mRNA-1
chr6_1 CDS 40303816 40304056 40303816 ID=Msa0885180-mRNA-1:cds;Parent=Msa0885180-mRNA-1
chr6_1 CDS 40303393 40303581 40303393 ID=Msa0885180-mRNA-1:cds;Parent=Msa0885180-mRNA-1
chr6_1 CDS 40303187 40303306 40303187 ID=Msa0885180-mRNA-1:cds;Parent=Msa0885180-mRNA-1
chr6_1 CDS 40302898 40303065 40302898 ID=Msa0885180-mRNA-1:cds;Parent=Msa0885180-mRNA-1
chr6_1 CDS 40301978 40302064 40301978 ID=Msa0885180-mRNA-1:cds;Parent=Msa0885180-mRNA-1
chr6_1 CDS 40301754 40301867 40301754 ID=Msa0885180-mRNA-1:cds;Parent=Msa0885180-mRNA-1
Gene Sequence

>Msa0885180

ATGGAGTTCGAGACAACGGAGGGTGTTAAGACAATTGCATCTTTCGAGAATATGGGGATAAAAGACGATTTGCTGCGTGGAATCTATCAATACGGTTTCGAGAATCCGTCGGCGATTCAACAGCGTGCGATTGCACCTATCCTCCAGGGCCGCGACGTCATTGCTCAGGCTCAATCTGGAACTGGAAAGACCTCCATGATTGCTCTCACTGTTTGCCATCTTATCGATACCTCCGTCCGAGATGTGCAGGCTTTAATTGTGTCTCCCACGCGGGAACTGGCCTCACAAACTGAGAAAGTTATATCTGCTATTGGCGGTTTCACAAATATACGAGCCCATGCTTGCATAGGAGGCAAAAGTGTAGGCGAAGACATAAGGCAACTTGAACACGGAGCTCACGTAGTGTCTGGAACACCTGGTCGAGTTTGTGACATGATAAAAAGGAGAACATTGCGAACAAGAGCTATCAAGTTGCTTGTGCTGGATGAATCTGATGAAATGCTTAGCAGAGGGTTCAAAGATCAAATATATGATGTGTATAGATATCTCCCTCCCGATCTCCAAGTTGTCTTGATTTCCGCTACGTTGCCTCGAGAAATTTTGGAGATGACAAATAAGTTTATGACAGATCCCGTGAGGATCCTTGTAAAACGTGACGAATTAACGTTGGAGGGCATAAGGCAATTTTTTGTTGCCGTTGAAAGGGAGGACTGGAAGTTCGACACTCTGTGCGATCTTTATGATATTCTTACCATCACTCAGGCTGTTATTTTCTGTAACACAAAGCGAAAGGTGGATTGGTTAACTGAAAAGTTGCGTAACAATAATTTCACCGTCTCCTCAATGCATGGTGACATGCCTCAAAGAGAAAGAGATGCAATTATGGGAGAATTTCGTGCTGGAGGAACCAGAGTGCTGATAACAACAGATGTTTGGGCTCGTGGCCTTGATGTACAGCAGGTTTCTCTAGTTATTAATTACGACCTTCCAAATAATCGAGAGCTCTACATTCATCGAATTGGCCGTTCTGGACGTTTTGGGCGAAAGGGCGTTGCAATAAATTTTGTGAAAAGCGATGATATCAAGATATTGAGAGATATTGAGCAATATTACAGTACTCAAATTGATGATCTGCCAATGAATGTTGCTGATCTTATATAA
Protein sequence

>Msa0885180

MEFETTEGVKTIASFENMGIKDDLLRGIYQYGFENPSAIQQRAIAPILQGRDVIAQAQSGTGKTSMIALTVCHLIDTSVRDVQALIVSPTRELASQTEKVISAIGGFTNIRAHACIGGKSVGEDIRQLEHGAHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPREILEMTNKFMTDPVRILVKRDELTLEGIRQFFVAVEREDWKFDTLCDLYDILTITQAVIFCNTKRKVDWLTEKLRNNNFTVSSMHGDMPQRERDAIMGEFRAGGTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDDLPMNVADLI*