Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1248370 | XP_024626574.1 | 65.734 | 286 | 42 | 6 | 6 | 265 | 5 | 260 | 6.34e-112 | 339 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa1248370 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015400 | Msa1248370 | 0.800484 | 1.410501e-48 | -8.615850e-47 |
| Msa0064970 | Msa1248370 | 0.822194 | 2.698487e-53 | -8.615850e-47 |
| Msa0075470 | Msa1248370 | 0.810661 | 1.031770e-50 | -8.615850e-47 |
| Msa0076220 | Msa1248370 | 0.808111 | 3.636198e-50 | -8.615850e-47 |
| Msa0090320 | Msa1248370 | 0.817266 | 3.605241e-52 | -8.615850e-47 |
| Msa0099210 | Msa1248370 | 0.806870 | 6.667609e-50 | -8.615850e-47 |
| Msa0103770 | Msa1248370 | 0.808836 | 2.546999e-50 | -8.615850e-47 |
| Msa0105260 | Msa1248370 | 0.823545 | 1.307499e-53 | -8.615850e-47 |
| Msa0110260 | Msa1248370 | 0.803727 | 3.036789e-49 | -8.615850e-47 |
| Msa0604350 | Msa1248370 | 0.801577 | 8.431333e-49 | -8.615850e-47 |
| Msa0610880 | Msa1248370 | 0.803572 | 3.270201e-49 | -8.615850e-47 |
| Msa0615010 | Msa1248370 | 0.804814 | 1.803529e-49 | -8.615850e-47 |
| Msa0645300 | Msa1248370 | 0.820432 | 6.880081e-53 | -8.615850e-47 |
| Msa0649110 | Msa1248370 | 0.808862 | 2.514029e-50 | -8.615850e-47 |
| Msa0650630 | Msa1248370 | 0.813496 | 2.485750e-51 | -8.615850e-47 |
| Msa0669410 | Msa1248370 | 0.819204 | 1.312981e-52 | -8.615850e-47 |
| Msa0681250 | Msa1248370 | 0.809266 | 2.059611e-50 | -8.615850e-47 |
| Msa0694370 | Msa1248370 | 0.813410 | 2.595479e-51 | -8.615850e-47 |
| Msa0696540 | Msa1248370 | 0.812884 | 3.386407e-51 | -8.615850e-47 |
| Msa0701010 | Msa1248370 | 0.805381 | 1.372377e-49 | -8.615850e-47 |
| Msa0703120 | Msa1248370 | 0.809684 | 1.675346e-50 | -8.615850e-47 |
| Msa0729800 | Msa1248370 | 0.844608 | 6.804514e-59 | -8.615850e-47 |
| Msa0731940 | Msa1248370 | 0.815834 | 7.546192e-52 | -8.615850e-47 |
| Msa0733290 | Msa1248370 | 0.808881 | 2.490310e-50 | -8.615850e-47 |
| Msa0743810 | Msa1248370 | 0.821717 | 3.479768e-53 | -8.615850e-47 |
| Msa0748970 | Msa1248370 | 0.885421 | 8.253164e-72 | -8.615850e-47 |
| Msa0756320 | Msa1248370 | 0.808055 | 3.737513e-50 | -8.615850e-47 |
| Msa0768290 | Msa1248370 | 0.849850 | 2.481152e-60 | -8.615850e-47 |
| Msa0768310 | Msa1248370 | 0.800834 | 1.196845e-48 | -8.615850e-47 |
| Msa0768370 | Msa1248370 | 0.864551 | 1.121124e-64 | -8.615850e-47 |
| Msa0783160 | Msa1248370 | 0.819302 | 1.247122e-52 | -8.615850e-47 |
| Msa0784290 | Msa1248370 | 0.831250 | 1.856861e-55 | -8.615850e-47 |
| Msa0784300 | Msa1248370 | 0.811717 | 6.087667e-51 | -8.615850e-47 |
| Msa0787120 | Msa1248370 | 0.818689 | 1.719560e-52 | -8.615850e-47 |
| Msa0800210 | Msa1248370 | 0.840781 | 7.069823e-58 | -8.615850e-47 |
| Msa0808010 | Msa1248370 | 0.824334 | 8.538378e-54 | -8.615850e-47 |
| Msa0808020 | Msa1248370 | 0.817948 | 2.529899e-52 | -8.615850e-47 |
| Msa0810220 | Msa1248370 | 0.800451 | 1.432621e-48 | -8.615850e-47 |
| Msa0824390 | Msa1248370 | 0.802219 | 6.222893e-49 | -8.615850e-47 |
| Msa0824590 | Msa1248370 | 0.809518 | 1.819052e-50 | -8.615850e-47 |
| Msa0824600 | Msa1248370 | 0.813693 | 2.248944e-51 | -8.615850e-47 |
| Msa0826320 | Msa1248370 | 0.803492 | 3.397213e-49 | -8.615850e-47 |
| Msa0832340 | Msa1248370 | 0.835175 | 1.954859e-56 | -8.615850e-47 |
| Msa0124250 | Msa1248370 | 0.810170 | 1.316740e-50 | -8.615850e-47 |
| Msa0131770 | Msa1248370 | 0.859460 | 4.074553e-63 | -8.615850e-47 |
| Msa0137640 | Msa1248370 | 0.817180 | 3.769074e-52 | -8.615850e-47 |
| Msa0142220 | Msa1248370 | 0.819387 | 1.192703e-52 | -8.615850e-47 |
| Msa0182740 | Msa1248370 | 0.824600 | 7.391852e-54 | -8.615850e-47 |
| Msa0194440 | Msa1248370 | 0.807801 | 4.233298e-50 | -8.615850e-47 |
| Msa0198910 | Msa1248370 | 0.831813 | 1.349450e-55 | -8.615850e-47 |
| Msa0204840 | Msa1248370 | 0.802295 | 6.004132e-49 | -8.615850e-47 |
| Msa0218370 | Msa1248370 | 0.803612 | 3.208856e-49 | -8.615850e-47 |
| Msa0219590 | Msa1248370 | 0.819216 | 1.305136e-52 | -8.615850e-47 |
| Msa0233080 | Msa1248370 | 0.801854 | 7.397867e-49 | -8.615850e-47 |
| Msa1248300 | Msa1248370 | 0.921092 | 5.567623e-88 | -8.615850e-47 |
| Msa1248310 | Msa1248370 | 0.957253 | 4.241906e-115 | -8.615850e-47 |
| Msa1248370 | Msa1268880 | 0.816501 | 5.354180e-52 | -8.615850e-47 |
| Msa1248370 | Msa1270230 | 0.813653 | 2.295478e-51 | -8.615850e-47 |
| Msa1248370 | Msa1276890 | 0.801570 | 8.459258e-49 | -8.615850e-47 |
| Msa1248370 | Msa1284680 | 0.826180 | 3.125681e-54 | -8.615850e-47 |
| Msa1248370 | Msa1285930 | 0.816651 | 4.954516e-52 | -8.615850e-47 |
| Msa1248370 | Msa1286800 | 0.805248 | 1.463052e-49 | -8.615850e-47 |
| Msa1248370 | Msa1287800 | 0.801873 | 7.331995e-49 | -8.615850e-47 |
| Msa1248370 | Msa1287810 | 0.812122 | 4.970474e-51 | -8.615850e-47 |
| Msa1248370 | Msa1289420 | 0.891527 | 3.663393e-74 | -8.615850e-47 |
| Msa1248370 | Msa1289430 | 0.878380 | 2.943393e-69 | -8.615850e-47 |
| Msa1248370 | Msa1307890 | 0.805469 | 1.315134e-49 | -8.615850e-47 |
| Msa1248370 | Msa1308870 | 0.806814 | 6.853334e-50 | -8.615850e-47 |
| Msa1248370 | Msa1320300 | 0.825304 | 5.042151e-54 | -8.615850e-47 |
| Msa1248370 | Msa1340590 | 0.812559 | 3.989573e-51 | -8.615850e-47 |
| Msa1248370 | Msa1344520 | 0.828439 | 8.985849e-55 | -8.615850e-47 |
| Msa1248370 | Msa1366810 | 0.852864 | 3.489347e-61 | -8.615850e-47 |
| Msa1248370 | Msa1397580 | 0.809554 | 1.786458e-50 | -8.615850e-47 |
| Msa1248370 | Msa1410680 | 0.806578 | 7.683292e-50 | -8.615850e-47 |
| Msa1248370 | Msa1420820 | 0.803973 | 2.699795e-49 | -8.615850e-47 |
| Msa1248370 | Msa1422180 | 0.829493 | 4.990290e-55 | -8.615850e-47 |
| Msa1248370 | Msa1448640 | 0.800263 | 1.564306e-48 | -8.615850e-47 |
| Msa1248370 | Msa1458750 | 0.842427 | 2.602778e-58 | -8.615850e-47 |
| Msa1248370 | Msa1466540 | 0.802891 | 4.523382e-49 | -8.615850e-47 |
| Msa0391180 | Msa1248370 | 0.802981 | 4.334410e-49 | -8.615850e-47 |
| Msa0411390 | Msa1248370 | 0.843993 | 9.956330e-59 | -8.615850e-47 |
| Msa0413410 | Msa1248370 | 0.800444 | 1.437010e-48 | -8.615850e-47 |
| Msa0414420 | Msa1248370 | 0.802018 | 6.846646e-49 | -8.615850e-47 |
| Msa0417940 | Msa1248370 | 0.817653 | 2.948912e-52 | -8.615850e-47 |
| Msa0423860 | Msa1248370 | 0.802072 | 6.672728e-49 | -8.615850e-47 |
| Msa0428000 | Msa1248370 | 0.818247 | 2.165408e-52 | -8.615850e-47 |
| Msa0434000 | Msa1248370 | 0.830426 | 2.956282e-55 | -8.615850e-47 |
| Msa0434200 | Msa1248370 | 0.813503 | 2.477195e-51 | -8.615850e-47 |
| Msa0450000 | Msa1248370 | 0.819983 | 8.720557e-53 | -8.615850e-47 |
| Msa0452900 | Msa1248370 | 0.811194 | 7.908901e-51 | -8.615850e-47 |
| Msa0454530 | Msa1248370 | 0.808620 | 2.832034e-50 | -8.615850e-47 |
| Msa0455760 | Msa1248370 | 0.813867 | 2.059404e-51 | -8.615850e-47 |
| Msa0459260 | Msa1248370 | 0.806523 | 7.892624e-50 | -8.615850e-47 |
| Msa0461160 | Msa1248370 | 0.801682 | 8.023593e-49 | -8.615850e-47 |
| Msa0475600 | Msa1248370 | 0.800552 | 1.366358e-48 | -8.615850e-47 |
| Msa0479340 | Msa1248370 | 0.818617 | 1.784831e-52 | -8.615850e-47 |
| Msa0980200 | Msa1248370 | 0.826236 | 3.030449e-54 | -8.615850e-47 |
| Msa0989620 | Msa1248370 | 0.823083 | 1.676651e-53 | -8.615850e-47 |
| Msa0997500 | Msa1248370 | 0.827451 | 1.553294e-54 | -8.615850e-47 |
| Msa0998690 | Msa1248370 | 0.803284 | 3.750872e-49 | -8.615850e-47 |
| Msa0999120 | Msa1248370 | 0.802591 | 5.216761e-49 | -8.615850e-47 |
| Msa0999220 | Msa1248370 | 0.802353 | 5.840416e-49 | -8.615850e-47 |
| Msa1000880 | Msa1248370 | 0.812702 | 3.712185e-51 | -8.615850e-47 |
| Msa1000890 | Msa1248370 | 0.804462 | 2.135861e-49 | -8.615850e-47 |
| Msa1000900 | Msa1248370 | 0.800299 | 1.538242e-48 | -8.615850e-47 |
| Msa1002360 | Msa1248370 | 0.810998 | 8.723051e-51 | -8.615850e-47 |
| Msa1023050 | Msa1248370 | 0.806885 | 6.618208e-50 | -8.615850e-47 |
| Msa1025360 | Msa1248370 | 0.819618 | 1.056752e-52 | -8.615850e-47 |
| Msa1025370 | Msa1248370 | 0.819438 | 1.161430e-52 | -8.615850e-47 |
| Msa1028230 | Msa1248370 | 0.808200 | 3.481271e-50 | -8.615850e-47 |
| Msa1044830 | Msa1248370 | 0.821456 | 3.998399e-53 | -8.615850e-47 |
| Msa1044840 | Msa1248370 | 0.818652 | 1.753148e-52 | -8.615850e-47 |
| Msa1060840 | Msa1248370 | 0.819894 | 9.138896e-53 | -8.615850e-47 |
| Msa1068420 | Msa1248370 | 0.832563 | 8.799660e-56 | -8.615850e-47 |
| Msa0251320 | Msa1248370 | 0.802806 | 4.711320e-49 | -8.615850e-47 |
| Msa0251640 | Msa1248370 | 0.839917 | 1.189296e-57 | -8.615850e-47 |
| Msa0267000 | Msa1248370 | 0.810341 | 1.209832e-50 | -8.615850e-47 |
| Msa0267010 | Msa1248370 | 0.812017 | 5.238276e-51 | -8.615850e-47 |
| Msa0273100 | Msa1248370 | 0.820758 | 5.789846e-53 | -8.615850e-47 |
| Msa0290870 | Msa1248370 | 0.832999 | 6.858589e-56 | -8.615850e-47 |
| Msa0292930 | Msa1248370 | 0.812464 | 4.184476e-51 | -8.615850e-47 |
| Msa0305190 | Msa1248370 | 0.806693 | 7.266315e-50 | -8.615850e-47 |
| Msa0307540 | Msa1248370 | 0.829939 | 3.887722e-55 | -8.615850e-47 |
| Msa0311750 | Msa1248370 | 0.805954 | 1.040318e-49 | -8.615850e-47 |
| Msa0322360 | Msa1248370 | 0.835107 | 2.033526e-56 | -8.615850e-47 |
| Msa0339620 | Msa1248370 | 0.801285 | 9.675557e-49 | -8.615850e-47 |
| Msa0342750 | Msa1248370 | 0.882358 | 1.113902e-70 | -8.615850e-47 |
| Msa0342810 | Msa1248370 | 0.817921 | 2.566207e-52 | -8.615850e-47 |
| Msa0360510 | Msa1248370 | 0.808102 | 3.651633e-50 | -8.615850e-47 |
| Msa1112300 | Msa1248370 | 0.810495 | 1.120368e-50 | -8.615850e-47 |
| Msa1120740 | Msa1248370 | 0.826241 | 3.022981e-54 | -8.615850e-47 |
| Msa1121200 | Msa1248370 | 0.817396 | 3.370860e-52 | -8.615850e-47 |
| Msa1121480 | Msa1248370 | 0.874168 | 8.339321e-68 | -8.615850e-47 |
| Msa1121490 | Msa1248370 | 0.859328 | 4.462105e-63 | -8.615850e-47 |
| Msa1135220 | Msa1248370 | 0.806005 | 1.014865e-49 | -8.615850e-47 |
| Msa1137570 | Msa1248370 | 0.830808 | 2.383237e-55 | -8.615850e-47 |
| Msa1144450 | Msa1248370 | 0.848216 | 7.060274e-60 | -8.615850e-47 |
| Msa1146100 | Msa1248370 | 0.804769 | 1.842394e-49 | -8.615850e-47 |
| Msa1149360 | Msa1248370 | 0.802872 | 4.564425e-49 | -8.615850e-47 |
| Msa1150370 | Msa1248370 | 0.811184 | 7.949222e-51 | -8.615850e-47 |
| Msa1185110 | Msa1248370 | 0.812705 | 3.706657e-51 | -8.615850e-47 |
| Msa1205020 | Msa1248370 | 0.812533 | 4.042009e-51 | -8.615850e-47 |
| Msa0490140 | Msa1248370 | 0.811537 | 6.663321e-51 | -8.615850e-47 |
| Msa0491590 | Msa1248370 | 0.813435 | 2.564076e-51 | -8.615850e-47 |
| Msa0493000 | Msa1248370 | 0.810709 | 1.007321e-50 | -8.615850e-47 |
| Msa0514320 | Msa1248370 | 0.801079 | 1.066221e-48 | -8.615850e-47 |
| Msa0523940 | Msa1248370 | 0.802716 | 4.916923e-49 | -8.615850e-47 |
| Msa0537720 | Msa1248370 | 0.808325 | 3.273324e-50 | -8.615850e-47 |
| Msa0545700 | Msa1248370 | 0.800609 | 1.329833e-48 | -8.615850e-47 |
| Msa0556430 | Msa1248370 | 0.839630 | 1.412621e-57 | -8.615850e-47 |
| Msa0585230 | Msa1248370 | 0.813801 | 2.129126e-51 | -8.615850e-47 |
| Msa0598780 | Msa1248370 | 0.800581 | 1.347417e-48 | -8.615850e-47 |
| Msa0598880 | Msa1248370 | -0.823413 | 1.403889e-53 | -8.615850e-47 |
| Msa0600700 | Msa1248370 | 0.802728 | 4.887533e-49 | -8.615850e-47 |
| Msa0842710 | Msa1248370 | 0.837945 | 3.851348e-57 | -8.615850e-47 |
| Msa0844490 | Msa1248370 | 0.846404 | 2.219204e-59 | -8.615850e-47 |
| Msa0848960 | Msa1248370 | 0.815933 | 7.172942e-52 | -8.615850e-47 |
| Msa0858980 | Msa1248370 | 0.837783 | 4.240311e-57 | -8.615850e-47 |
| Msa0864070 | Msa1248370 | 0.827280 | 1.706692e-54 | -8.615850e-47 |
| Msa0877250 | Msa1248370 | 0.817297 | 3.546796e-52 | -8.615850e-47 |
| Msa0885180 | Msa1248370 | 0.800513 | 1.391385e-48 | -8.615850e-47 |
| Msa0885290 | Msa1248370 | 0.806851 | 6.729027e-50 | -8.615850e-47 |
| Msa0888130 | Msa1248370 | 0.811995 | 5.295579e-51 | -8.615850e-47 |
| Msa0888370 | Msa1248370 | 0.805875 | 1.080493e-49 | -8.615850e-47 |
| Msa0888420 | Msa1248370 | 0.807866 | 4.099456e-50 | -8.615850e-47 |
| Msa0899430 | Msa1248370 | 0.853626 | 2.110124e-61 | -8.615850e-47 |
| Msa0899450 | Msa1248370 | 0.828112 | 1.077158e-54 | -8.615850e-47 |
| Msa0900910 | Msa1248370 | 0.844033 | 9.711496e-59 | -8.615850e-47 |
| Msa0900970 | Msa1248370 | 0.814444 | 1.535923e-51 | -8.615850e-47 |
| Msa0901020 | Msa1248370 | 0.816672 | 4.901423e-52 | -8.615850e-47 |
| Msa0901070 | Msa1248370 | 0.867689 | 1.137415e-65 | -8.615850e-47 |
| Msa0914270 | Msa1248370 | 0.844290 | 8.286930e-59 | -8.615850e-47 |
| Msa0914760 | Msa1248370 | 0.805153 | 1.531631e-49 | -8.615850e-47 |
| Msa0924050 | Msa1248370 | 0.830871 | 2.300614e-55 | -8.615850e-47 |
| Msa0924060 | Msa1248370 | 0.827480 | 1.528273e-54 | -8.615850e-47 |
| Msa0925250 | Msa1248370 | 0.801524 | 8.646878e-49 | -8.615850e-47 |
| Msa0925290 | Msa1248370 | 0.818537 | 1.860984e-52 | -8.615850e-47 |
| Msa0927380 | Msa1248370 | 0.851836 | 6.846318e-61 | -8.615850e-47 |
| Msa0948320 | Msa1248370 | 0.811628 | 6.364495e-51 | -8.615850e-47 |
| Msa0952720 | Msa1248370 | 0.802932 | 4.436108e-49 | -8.615850e-47 |
| Msa0953120 | Msa1248370 | 0.807831 | 4.170952e-50 | -8.615850e-47 |
| Msa0956270 | Msa1248370 | 0.803923 | 2.765056e-49 | -8.615850e-47 |
| Msa0958550 | Msa1248370 | 0.843311 | 1.514841e-58 | -8.615850e-47 |
| Msa0964900 | Msa1248370 | 0.836407 | 9.527121e-57 | -8.615850e-47 |
| Msa0966750 | Msa1248370 | 0.802854 | 4.603224e-49 | -8.615850e-47 |
| Msa0967280 | Msa1248370 | 0.934123 | 6.572636e-96 | -8.615850e-47 |
| Msa0969520 | Msa1248370 | 0.817257 | 3.621993e-52 | -8.615850e-47 |
| Msa0973100 | Msa1248370 | 0.804546 | 2.050907e-49 | -8.615850e-47 |
| Msa0974080 | Msa1248370 | 0.821956 | 3.063592e-53 | -8.615850e-47 |
| Msa0976670 | Msa1248370 | 0.820070 | 8.329082e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1248370 | MtrunA17_Chr2g0287651 | 50.746 | 201 | 68 | 4 | 128 | 302 | 58 | 253 | 6.68e-56 | 198 |
| Msa1248370 | MtrunA17_Chr2g0287651 | 56.250 | 80 | 35 | 0 | 273 | 352 | 479 | 558 | 5.82e-22 | 99.0 |
| Msa1248370 | MtrunA17_Chr1g0203051 | 34.109 | 129 | 76 | 1 | 151 | 270 | 101 | 229 | 4.43e-19 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 80 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAAGAACTTGTCATATAA+TGG | 0.247315 | 8_2:+42449736 | Msa1248370:CDS |
| TGCATTTACACCTTGTTTAT+CGG | 0.260369 | 8_2:+42449663 | Msa1248370:CDS |
| TGTTCACTACAGACCCAAAA+AGG | 0.266221 | 8_2:+42449577 | Msa1248370:CDS |
| TGGCTAGCAGGCTGAGATTT+GGG | 0.292506 | 8_2:-42451187 | None:intergenic |
| AGTGATGATGGTGGTTGTTC+TGG | 0.317361 | 8_2:+42449101 | Msa1248370:CDS |
| ATTAACTGCTGAAGGAATAA+TGG | 0.327415 | 8_2:+42449322 | Msa1248370:CDS |
| TTGGCTAGCAGGCTGAGATT+TGG | 0.334393 | 8_2:-42451188 | None:intergenic |
| CTGTTAAGAAGAGTGATATT+AGG | 0.348071 | 8_2:+42449414 | Msa1248370:CDS |
| GTAGAACCGTAATCATATTT+CGG | 0.389914 | 8_2:-42448903 | None:intergenic |
| ATAAGAACTTGTCATATAAT+GGG | 0.403187 | 8_2:+42449737 | Msa1248370:CDS |
| TGCTGAAGGAATAATGGAAA+TGG | 0.417359 | 8_2:+42449328 | Msa1248370:CDS |
| CAGCACAGGGGATGAAAACT+TGG | 0.418956 | 8_2:-42450643 | None:intergenic |
| TGAGGCTGCTGAAATCTATA+CGG | 0.433917 | 8_2:+42450692 | Msa1248370:CDS |
| TGTAAATGCACAACACTAGA+TGG | 0.434308 | 8_2:-42449650 | None:intergenic |
| GGTTCACCGAAATATGATTA+CGG | 0.436818 | 8_2:+42448897 | Msa1248370:CDS |
| GACGATAGTTCTGATGAAAC+TGG | 0.457084 | 8_2:+42449068 | Msa1248370:CDS |
| GCTCAGAAGGGTGGATATCC+TGG | 0.461189 | 8_2:+42449770 | Msa1248370:CDS |
| AAACCTATCCGATGATTGTT+GGG | 0.461967 | 8_2:+42448946 | Msa1248370:CDS |
| TAGTGAACACGAAGCCTAGC+TGG | 0.465685 | 8_2:-42449563 | None:intergenic |
| GCAGATAAAGCACAAATTGA+TGG | 0.466709 | 8_2:+42449698 | Msa1248370:CDS |
| TGGCTAGCATGCTGAGACAT+GGG | 0.467113 | 8_2:-42451288 | None:intergenic |
| CACTAGATGGAGTAAGTTCA+TGG | 0.468010 | 8_2:-42449637 | None:intergenic |
| TGTTCTGGTGATTATAGTGT+TGG | 0.469535 | 8_2:+42449116 | Msa1248370:CDS |
| GAGAGAAGAAGCATTTATCA+AGG | 0.474767 | 8_2:+42449495 | Msa1248370:CDS |
| AAGAGTTATGTTCTGAAGAA+AGG | 0.479302 | 8_2:+42450540 | Msa1248370:intron |
| AATAATGGAAATGGAATTTG+CGG | 0.487093 | 8_2:+42449337 | Msa1248370:CDS |
| AGCCAGAAAGACGTGGGAAA+AGG | 0.492341 | 8_2:+42451306 | Msa1248370:CDS |
| GGGATACATTGTGGCTCAGA+AGG | 0.492920 | 8_2:+42449757 | Msa1248370:CDS |
| GAAACCTATCCGATGATTGT+TGG | 0.493181 | 8_2:+42448945 | Msa1248370:CDS |
| AATGTAGATGATAGTTCTGA+TGG | 0.493462 | 8_2:+42449002 | Msa1248370:CDS |
| TGCAGATGAGTTGTCAGCAC+AGG | 0.496005 | 8_2:-42450657 | None:intergenic |
| GCAGTATGTATGCAACAAGC+AGG | 0.502107 | 8_2:+42449466 | Msa1248370:CDS |
| TGTAGTTGTTGGTGAGGAAA+TGG | 0.504666 | 8_2:+42449286 | Msa1248370:CDS |
| GAAGATGATGATGTAGTTGT+TGG | 0.505754 | 8_2:+42449275 | Msa1248370:CDS |
| GTGAAAGAAGAGATTATGAA+AGG | 0.507624 | 8_2:+42450732 | Msa1248370:CDS |
| AGTGAAGGTCATGGTAATGA+AGG | 0.507811 | 8_2:+42449221 | Msa1248370:CDS |
| ATAATGGAAATGGAATTTGC+GGG | 0.512795 | 8_2:+42449338 | Msa1248370:CDS |
| CCGATGATTGTTGGGAGTCA+AGG | 0.516932 | 8_2:+42448954 | Msa1248370:CDS |
| ATAAATTCATTAACTGCTGA+AGG | 0.519495 | 8_2:+42449314 | Msa1248370:CDS |
| CCTTGACTCCCAACAATCAT+CGG | 0.519588 | 8_2:-42448954 | None:intergenic |
| CTGGCTAGCATGCTGAGACA+TGG | 0.519805 | 8_2:-42451289 | None:intergenic |
| AGCATTTATCAAGGTCAGAT+AGG | 0.519899 | 8_2:+42449504 | Msa1248370:CDS |
| AACGCGGGAGAAGGATCAAA+GGG | 0.533543 | 8_2:+42451112 | Msa1248370:CDS |
| AAACGCGGGAGAAGGATCAA+AGG | 0.545631 | 8_2:+42451111 | Msa1248370:CDS |
| TGATTACGGTTCTACGAATG+TGG | 0.550987 | 8_2:+42448911 | Msa1248370:CDS |
| TGTTTATCGGCAAATATTCG+AGG | 0.554010 | 8_2:+42449676 | Msa1248370:CDS |
| CGAATATTTGCCGATAAACA+AGG | 0.558539 | 8_2:-42449673 | None:intergenic |
| GCAGATGAGTTGTCAGCACA+GGG | 0.564043 | 8_2:-42450656 | None:intergenic |
| TTGTTGGTGAGGAAATGGTA+AGG | 0.572827 | 8_2:+42449291 | Msa1248370:CDS |
| ACTCCCAACAATCATCGGAT+AGG | 0.580782 | 8_2:-42448949 | None:intergenic |
| TACATTGTGGCTCAGAAGGG+TGG | 0.583038 | 8_2:+42449761 | Msa1248370:CDS |
| CAGTATGTATGCAACAAGCA+GGG | 0.584535 | 8_2:+42449467 | Msa1248370:CDS |
| GCATGCTAGCCAGAAAGACG+TGG | 0.591586 | 8_2:+42451299 | Msa1248370:CDS |
| GGAGGCAATGAAAGTGATGA+TGG | 0.602419 | 8_2:+42449089 | Msa1248370:CDS |
| TCATATAATGGGATACATTG+TGG | 0.603031 | 8_2:+42449748 | Msa1248370:CDS |
| GGTGAAGATGATGAAAGTCA+AGG | 0.619507 | 8_2:+42449146 | Msa1248370:intron |
| GGTCATGGTAATGAAGGTCA+TGG | 0.621031 | 8_2:+42449227 | Msa1248370:CDS |
| GAAAGGTGTTGCAATGAGTG+TGG | 0.626883 | 8_2:+42450749 | Msa1248370:CDS |
| AGTATGTATGCAACAAGCAG+GGG | 0.634341 | 8_2:+42449468 | Msa1248370:CDS |
| ATGTAGATGATAGTTCTGAT+GGG | 0.634382 | 8_2:+42449003 | Msa1248370:CDS |
| TCTGCATTGTCTTGAACGTG+AGG | 0.635704 | 8_2:+42450674 | Msa1248370:CDS |
| GGATACATTGTGGCTCAGAA+GGG | 0.635876 | 8_2:+42449758 | Msa1248370:CDS |
| GATAGTTCTGATGGGAGTCG+TGG | 0.635892 | 8_2:+42449011 | Msa1248370:CDS |
| CTCGTACAAAGTGTCCAGCT+AGG | 0.644688 | 8_2:+42449549 | Msa1248370:CDS |
| ATTGATGGTCTTCAATTACA+CGG | 0.645357 | 8_2:+42449713 | Msa1248370:CDS |
| AATGAAGGTCATGGTAGTGA+AGG | 0.653004 | 8_2:+42449236 | Msa1248370:CDS |
| CAAAGGGAGGAAAATCAAAG+TGG | 0.657279 | 8_2:+42451128 | Msa1248370:CDS |
| ATGGCAGAAGGATCAAAGAG+AGG | 0.659224 | 8_2:+42451217 | Msa1248370:CDS |
| TGATGATGTAGTTGTTGGTG+AGG | 0.665725 | 8_2:+42449280 | Msa1248370:CDS |
| TTAACGATGAGATTGTAATG+AGG | 0.666140 | 8_2:+42449444 | Msa1248370:CDS |
| GGTGATGAAAGTGAAGGTCA+TGG | 0.683798 | 8_2:+42449212 | Msa1248370:CDS |
| AGGTGTTGCAATGAGTGTGG+AGG | 0.696599 | 8_2:+42450752 | Msa1248370:CDS |
| CATGCTAGCCAGAAAGACGT+GGG | 0.697336 | 8_2:+42451300 | Msa1248370:CDS |
| GCGGGAGAAGGATCAAAGGG+AGG | 0.697983 | 8_2:+42451115 | Msa1248370:CDS |
| GGCAATGAAAGTGATGATGG+TGG | 0.706532 | 8_2:+42449092 | Msa1248370:CDS |
| GATAGTTCTGATGAAACTGG+AGG | 0.707194 | 8_2:+42449071 | Msa1248370:CDS |
| AGTGAAGGTGATGAAACTGA+AGG | 0.712471 | 8_2:+42449191 | Msa1248370:CDS |
| AGTGAAAGTGATGAAAGTGA+AGG | 0.717258 | 8_2:+42449176 | Msa1248370:CDS |
| ACTGAAGGTGATGAAAGTGA+AGG | 0.722369 | 8_2:+42449206 | Msa1248370:CDS |
| CAGATGAGTTGTCAGCACAG+GGG | 0.772263 | 8_2:-42450655 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAACAACAATGACTTTT+CGG | + | chr8_2:42448869-42448888 | Msa1248370:CDS | 20.0% |
| !! | AATAAGAACTTGTCATATAA+TGG | + | chr8_2:42449736-42449755 | Msa1248370:CDS | 20.0% |
| !! | ATAAGAACTTGTCATATAAT+GGG | + | chr8_2:42449737-42449756 | Msa1248370:CDS | 20.0% |
| !! | AAACAATAGAAACTTATATG+TGG | + | chr8_2:42450130-42450149 | Msa1248370:intron | 20.0% |
| !! | AACAATAGAAACTTATATGT+GGG | + | chr8_2:42450131-42450150 | Msa1248370:intron | 20.0% |
| !!! | ATTTCTGTATAATTTTGATG+AGG | + | chr8_2:42450575-42450594 | Msa1248370:CDS | 20.0% |
| !! | CCTTCAACAAAAAAAAATAT+GGG | - | chr8_2:42450919-42450938 | None:intergenic | 20.0% |
| !! | TCCTTCAACAAAAAAAAATA+TGG | - | chr8_2:42450920-42450939 | None:intergenic | 20.0% |
| !! | AATATTTGATTATATTGCGT+TGG | + | chr8_2:42450963-42450982 | Msa1248370:intron | 20.0% |
| ! | ATAAATTCATTAACTGCTGA+AGG | + | chr8_2:42449314-42449333 | Msa1248370:CDS | 25.0% |
| !! | AATAATGGAAATGGAATTTG+CGG | + | chr8_2:42449337-42449356 | Msa1248370:CDS | 25.0% |
| !! | TTTAAGTACTGTAAGTGTAA+AGG | + | chr8_2:42449386-42449405 | Msa1248370:intron | 25.0% |
| !! | ATAACATATCTACCCTTTTT+GGG | - | chr8_2:42449593-42449612 | None:intergenic | 25.0% |
| !! | AAAAATGCGTGTTGTTATTA+AGG | + | chr8_2:42449835-42449854 | Msa1248370:intron | 25.0% |
| !!! | ACGTTTGAAATGTCTATTTT+GGG | + | chr8_2:42449949-42449968 | Msa1248370:intron | 25.0% |
| !!! | AGATCAGATTATTTCTGTTT+TGG | + | chr8_2:42449986-42450005 | Msa1248370:intron | 25.0% |
| ! | TTTCATACAATCTAGAAAAC+TGG | - | chr8_2:42450163-42450182 | None:intergenic | 25.0% |
| !!! | TGTTAACAATTCAGCTTTTT+TGG | + | chr8_2:42450305-42450324 | Msa1248370:intron | 25.0% |
| !! | AGCAATGTACTCTAATTTTA+CGG | + | chr8_2:42450341-42450360 | Msa1248370:intron | 25.0% |
| ! | GAAGTTGACAAAATATATTG+AGG | + | chr8_2:42450806-42450825 | Msa1248370:intron | 25.0% |
| ! | TTGACAAAATATATTGAGGA+AGG | + | chr8_2:42450810-42450829 | Msa1248370:intron | 25.0% |
| !!! | CCCATATTTTTTTTTGTTGA+AGG | + | chr8_2:42450916-42450935 | Msa1248370:intron | 25.0% |
| ! | CGCAATATAATCAAATATTC+TGG | - | chr8_2:42450962-42450981 | None:intergenic | 25.0% |
| ! | AACAATGACTTTTCGGATTT+TGG | + | chr8_2:42448876-42448895 | Msa1248370:CDS | 30.0% |
| GTAGAACCGTAATCATATTT+CGG | - | chr8_2:42448906-42448925 | None:intergenic | 30.0% | |
| !! | AATGTAGATGATAGTTCTGA+TGG | + | chr8_2:42449002-42449021 | Msa1248370:CDS | 30.0% |
| !! | ATGTAGATGATAGTTCTGAT+GGG | + | chr8_2:42449003-42449022 | Msa1248370:CDS | 30.0% |
| !! | GATTATAGTGTTGGTGATAA+AGG | + | chr8_2:42449125-42449144 | Msa1248370:intron | 30.0% |
| ATTAACTGCTGAAGGAATAA+TGG | + | chr8_2:42449322-42449341 | Msa1248370:CDS | 30.0% | |
| ! | ATAATGGAAATGGAATTTGC+GGG | + | chr8_2:42449338-42449357 | Msa1248370:CDS | 30.0% |
| CTGTTAAGAAGAGTGATATT+AGG | + | chr8_2:42449414-42449433 | Msa1248370:CDS | 30.0% | |
| TTAACGATGAGATTGTAATG+AGG | + | chr8_2:42449444-42449463 | Msa1248370:CDS | 30.0% | |
| ! | CATAACATATCTACCCTTTT+TGG | - | chr8_2:42449594-42449613 | None:intergenic | 30.0% |
| ! | TGCATTTACACCTTGTTTAT+CGG | + | chr8_2:42449663-42449682 | Msa1248370:CDS | 30.0% |
| ! | ATTGATGGTCTTCAATTACA+CGG | + | chr8_2:42449713-42449732 | Msa1248370:CDS | 30.0% |
| ! | TCATATAATGGGATACATTG+TGG | + | chr8_2:42449748-42449767 | Msa1248370:CDS | 30.0% |
| !! | GACGTTTGAAATGTCTATTT+TGG | + | chr8_2:42449948-42449967 | Msa1248370:intron | 30.0% |
| CAAATATAACTGTTTGTGAG+TGG | - | chr8_2:42450089-42450108 | None:intergenic | 30.0% | |
| CACTCACAAACAGTTATATT+TGG | + | chr8_2:42450087-42450106 | Msa1248370:intron | 30.0% | |
| !!! | AACAATTCAGCTTTTTTGGA+TGG | + | chr8_2:42450309-42450328 | Msa1248370:intron | 30.0% |
| ! | AGAAGGAATTTGAAGAGTTT+TGG | + | chr8_2:42450364-42450383 | Msa1248370:intron | 30.0% |
| ! | GAAGGAATTTGAAGAGTTTT+GGG | + | chr8_2:42450365-42450384 | Msa1248370:intron | 30.0% |
| !! | AAGAGTTATGTTCTGAAGAA+AGG | + | chr8_2:42450540-42450559 | Msa1248370:intron | 30.0% |
| GTGAAAGAAGAGATTATGAA+AGG | + | chr8_2:42450732-42450751 | Msa1248370:CDS | 30.0% | |
| CAAAAAAAAATATGGGAGCA+TGG | - | chr8_2:42450912-42450931 | None:intergenic | 30.0% | |
| TATATTGCGTTGGACAAAAA+AGG | + | chr8_2:42450973-42450992 | Msa1248370:intron | 30.0% | |
| TTGTAAGAATGTTCAAACTG+TGG | + | chr8_2:42451007-42451026 | Msa1248370:intron | 30.0% | |
| GGTTCACCGAAATATGATTA+CGG | + | chr8_2:42448897-42448916 | Msa1248370:CDS | 35.0% | |
| AAACCTATCCGATGATTGTT+GGG | + | chr8_2:42448946-42448965 | Msa1248370:CDS | 35.0% | |
| TGTTCTGGTGATTATAGTGT+TGG | + | chr8_2:42449116-42449135 | Msa1248370:CDS | 35.0% | |
| AGTGAAAGTGATGAAAGTGA+AGG | + | chr8_2:42449176-42449195 | Msa1248370:CDS | 35.0% | |
| ! | GAAGATGATGATGTAGTTGT+TGG | + | chr8_2:42449275-42449294 | Msa1248370:CDS | 35.0% |
| ! | TGCTGAAGGAATAATGGAAA+TGG | + | chr8_2:42449328-42449347 | Msa1248370:CDS | 35.0% |
| !! | GAGAGAAGAAGCATTTATCA+AGG | + | chr8_2:42449495-42449514 | Msa1248370:CDS | 35.0% |
| AGCATTTATCAAGGTCAGAT+AGG | + | chr8_2:42449504-42449523 | Msa1248370:CDS | 35.0% | |
| TGTAAATGCACAACACTAGA+TGG | - | chr8_2:42449653-42449672 | None:intergenic | 35.0% | |
| CGAATATTTGCCGATAAACA+AGG | - | chr8_2:42449676-42449695 | None:intergenic | 35.0% | |
| TGTTTATCGGCAAATATTCG+AGG | + | chr8_2:42449676-42449695 | Msa1248370:CDS | 35.0% | |
| GCAGATAAAGCACAAATTGA+TGG | + | chr8_2:42449698-42449717 | Msa1248370:CDS | 35.0% | |
| GAATATTGACAAGAGGAATG+TGG | - | chr8_2:42449914-42449933 | None:intergenic | 35.0% | |
| AGTGGTAGAATATTGACAAG+AGG | - | chr8_2:42449921-42449940 | None:intergenic | 35.0% | |
| CAATATTCTACCACTGATGA+TGG | + | chr8_2:42449926-42449945 | Msa1248370:intron | 35.0% | |
| !! | AAATGTCTATTTTGGGCAGA+TGG | + | chr8_2:42449956-42449975 | Msa1248370:intron | 35.0% |
| !!! | TTATTTCTGTTTTGGCGATG+TGG | + | chr8_2:42449994-42450013 | Msa1248370:intron | 35.0% |
| GAACAAATACAACTATCCGT+TGG | + | chr8_2:42450042-42450061 | Msa1248370:intron | 35.0% | |
| ATATAACTGTTTGTGAGTGG+TGG | - | chr8_2:42450086-42450105 | None:intergenic | 35.0% | |
| !! | AGTTATATTTGGTGCTGCAT+TGG | + | chr8_2:42450098-42450117 | Msa1248370:intron | 35.0% |
| ! | GTACTCTAATTTTACGGAGA+AGG | + | chr8_2:42450347-42450366 | Msa1248370:intron | 35.0% |
| TACCAAAACATAGGAGAACA+AGG | + | chr8_2:42450431-42450450 | Msa1248370:intron | 35.0% | |
| ! | TTCCTTGTTCTCCTATGTTT+TGG | - | chr8_2:42450436-42450455 | None:intergenic | 35.0% |
| ATAGGAGAACAAGGAATTGT+GGG | + | chr8_2:42450440-42450459 | Msa1248370:intron | 35.0% | |
| !! | AATTTTGATGAGGCAATGAG+AGG | + | chr8_2:42450585-42450604 | Msa1248370:CDS | 35.0% |
| CAAGAAATTTGAATCTCGAG+AGG | + | chr8_2:42450884-42450903 | Msa1248370:intron | 35.0% | |
| TGATTACGGTTCTACGAATG+TGG | + | chr8_2:42448911-42448930 | Msa1248370:CDS | 40.0% | |
| GAAACCTATCCGATGATTGT+TGG | + | chr8_2:42448945-42448964 | Msa1248370:CDS | 40.0% | |
| !! | GACGATAGTTCTGATGAAAC+TGG | + | chr8_2:42449068-42449087 | Msa1248370:CDS | 40.0% |
| !! | GATAGTTCTGATGAAACTGG+AGG | + | chr8_2:42449071-42449090 | Msa1248370:CDS | 40.0% |
| GGTGAAGATGATGAAAGTCA+AGG | + | chr8_2:42449146-42449165 | Msa1248370:intron | 40.0% | |
| AGTGAAGGTGATGAAACTGA+AGG | + | chr8_2:42449191-42449210 | Msa1248370:CDS | 40.0% | |
| ACTGAAGGTGATGAAAGTGA+AGG | + | chr8_2:42449206-42449225 | Msa1248370:CDS | 40.0% | |
| ! | AGTGAAGGTCATGGTAATGA+AGG | + | chr8_2:42449221-42449240 | Msa1248370:CDS | 40.0% |
| ! | AATGAAGGTCATGGTAGTGA+AGG | + | chr8_2:42449236-42449255 | Msa1248370:CDS | 40.0% |
| ! | TGATGATGTAGTTGTTGGTG+AGG | + | chr8_2:42449280-42449299 | Msa1248370:CDS | 40.0% |
| ! | TGTAGTTGTTGGTGAGGAAA+TGG | + | chr8_2:42449286-42449305 | Msa1248370:CDS | 40.0% |
| ! | TTGTTGGTGAGGAAATGGTA+AGG | + | chr8_2:42449291-42449310 | Msa1248370:CDS | 40.0% |
| CAGTATGTATGCAACAAGCA+GGG | + | chr8_2:42449467-42449486 | Msa1248370:CDS | 40.0% | |
| AGTATGTATGCAACAAGCAG+GGG | + | chr8_2:42449468-42449487 | Msa1248370:CDS | 40.0% | |
| TGTTCACTACAGACCCAAAA+AGG | + | chr8_2:42449577-42449596 | Msa1248370:CDS | 40.0% | |
| GTTCACTACAGACCCAAAAA+GGG | + | chr8_2:42449578-42449597 | Msa1248370:CDS | 40.0% | |
| CACTAGATGGAGTAAGTTCA+TGG | - | chr8_2:42449640-42449659 | None:intergenic | 40.0% | |
| TTTCAAACGTCCATCATCAG+TGG | - | chr8_2:42449939-42449958 | None:intergenic | 40.0% | |
| ! | CCATCTGTTACAACTGCTTT+TGG | - | chr8_2:42450192-42450211 | None:intergenic | 40.0% |
| CCAAAAGCAGTTGTAACAGA+TGG | + | chr8_2:42450189-42450208 | Msa1248370:intron | 40.0% | |
| !!! | TCCTATGTTTTGGTAACCCA+GGG | - | chr8_2:42450426-42450445 | None:intergenic | 40.0% |
| CATAGGAGAACAAGGAATTG+TGG | + | chr8_2:42450439-42450458 | Msa1248370:intron | 40.0% | |
| TACCTGCGTGACAATTTCTT+TGG | + | chr8_2:42450471-42450490 | Msa1248370:intron | 40.0% | |
| TGAGGCTGCTGAAATCTATA+CGG | + | chr8_2:42450692-42450711 | Msa1248370:CDS | 40.0% | |
| TGTGGAGGAAAAAGAAGTGA+AGG | + | chr8_2:42450767-42450786 | Msa1248370:intron | 40.0% | |
| GTGGAGGAAAAAGAAGTGAA+GGG | + | chr8_2:42450768-42450787 | Msa1248370:intron | 40.0% | |
| ! | AGTGCTTGCAGAACATTTTC+TGG | - | chr8_2:42451050-42451069 | None:intergenic | 40.0% |
| TGGCTATCATGCTGAGATAT+GGG | - | chr8_2:42451088-42451107 | None:intergenic | 40.0% | |
| TTGGCTATCATGCTGAGATA+TGG | - | chr8_2:42451089-42451108 | None:intergenic | 40.0% | |
| GCATGATAGCCAAAAAAACG+CGG | + | chr8_2:42451096-42451115 | Msa1248370:intron | 40.0% | |
| CATGATAGCCAAAAAAACGC+GGG | + | chr8_2:42451097-42451116 | Msa1248370:CDS | 40.0% | |
| CAAAGGGAGGAAAATCAAAG+TGG | + | chr8_2:42451128-42451147 | Msa1248370:CDS | 40.0% | |
| ! | ATCCTTCTGCCATGTCTTTT+TGG | - | chr8_2:42451210-42451229 | None:intergenic | 40.0% |
| ACTCCCAACAATCATCGGAT+AGG | - | chr8_2:42448952-42448971 | None:intergenic | 45.0% | |
| CCTTGACTCCCAACAATCAT+CGG | - | chr8_2:42448957-42448976 | None:intergenic | 45.0% | |
| CAGAATTCTCAAGCGAATGC+AGG | + | chr8_2:42449044-42449063 | Msa1248370:intron | 45.0% | |
| GGAGGCAATGAAAGTGATGA+TGG | + | chr8_2:42449089-42449108 | Msa1248370:CDS | 45.0% | |
| !! | GGCAATGAAAGTGATGATGG+TGG | + | chr8_2:42449092-42449111 | Msa1248370:CDS | 45.0% |
| !! | AGTGATGATGGTGGTTGTTC+TGG | + | chr8_2:42449101-42449120 | Msa1248370:CDS | 45.0% |
| GGTGATGAAAGTGAAGGTCA+TGG | + | chr8_2:42449212-42449231 | Msa1248370:CDS | 45.0% | |
| ! | GGTCATGGTAATGAAGGTCA+TGG | + | chr8_2:42449227-42449246 | Msa1248370:CDS | 45.0% |
| GCAGTATGTATGCAACAAGC+AGG | + | chr8_2:42449466-42449485 | Msa1248370:CDS | 45.0% | |
| GGATACATTGTGGCTCAGAA+GGG | + | chr8_2:42449758-42449777 | Msa1248370:CDS | 45.0% | |
| TTCTTAGTGAACCCAACACC+AGG | - | chr8_2:42449791-42449810 | None:intergenic | 45.0% | |
| AGAGGAATGTGGATCAGTTG+AGG | - | chr8_2:42449903-42449922 | None:intergenic | 45.0% | |
| GCAGCAGACAAAATCACCAA+CGG | - | chr8_2:42450061-42450080 | None:intergenic | 45.0% | |
| !! | ATTTGGTGCTGCATTGGTGA+TGG | + | chr8_2:42450104-42450123 | Msa1248370:intron | 45.0% |
| GCAGTTGTAACAGATGGTGA+CGG | + | chr8_2:42450195-42450214 | Msa1248370:intron | 45.0% | |
| !! | AGATGGTGACGGTTCTATGA+GGG | + | chr8_2:42450206-42450225 | Msa1248370:intron | 45.0% |
| TTCTATGAGGGAGGCGATAA+AGG | + | chr8_2:42450218-42450237 | Msa1248370:intron | 45.0% | |
| !!! | TGAAGAGTTTTGGGCTGACT+TGG | + | chr8_2:42450374-42450393 | Msa1248370:intron | 45.0% |
| TAACCCAGGGATTGTTCTCA+AGG | - | chr8_2:42450413-42450432 | None:intergenic | 45.0% | |
| TCCCTGGGTTACCAAAACAT+AGG | + | chr8_2:42450422-42450441 | Msa1248370:intron | 45.0% | |
| !!! | CTCCTATGTTTTGGTAACCC+AGG | - | chr8_2:42450427-42450446 | None:intergenic | 45.0% |
| CACCAAAGAAATTGTCACGC+AGG | - | chr8_2:42450476-42450495 | None:intergenic | 45.0% | |
| CTGCGTGACAATTTCTTTGG+TGG | + | chr8_2:42450474-42450493 | Msa1248370:intron | 45.0% | |
| TCTGCATTGTCTTGAACGTG+AGG | + | chr8_2:42450674-42450693 | Msa1248370:CDS | 45.0% | |
| !! | GAAAGGTGTTGCAATGAGTG+TGG | + | chr8_2:42450749-42450768 | Msa1248370:CDS | 45.0% |
| !!! | ATCCTTCTCCCGCGTTTTTT+TGG | - | chr8_2:42451108-42451127 | None:intergenic | 45.0% |
| AGCCAAAAAGACATGGCAGA+AGG | + | chr8_2:42451205-42451224 | Msa1248370:CDS | 45.0% | |
| ATGGCAGAAGGATCAAAGAG+AGG | + | chr8_2:42451217-42451236 | Msa1248370:CDS | 45.0% | |
| ! | ATCCTTTTCCCACGTCTTTC+TGG | - | chr8_2:42451311-42451330 | None:intergenic | 45.0% |
| CCGATGATTGTTGGGAGTCA+AGG | + | chr8_2:42448954-42448973 | Msa1248370:CDS | 50.0% | |
| !! | GATAGTTCTGATGGGAGTCG+TGG | + | chr8_2:42449011-42449030 | Msa1248370:CDS | 50.0% |
| ! | CTCGTACAAAGTGTCCAGCT+AGG | + | chr8_2:42449549-42449568 | Msa1248370:CDS | 50.0% |
| TAGTGAACACGAAGCCTAGC+TGG | - | chr8_2:42449566-42449585 | None:intergenic | 50.0% | |
| GGGATACATTGTGGCTCAGA+AGG | + | chr8_2:42449757-42449776 | Msa1248370:CDS | 50.0% | |
| TACATTGTGGCTCAGAAGGG+TGG | + | chr8_2:42449761-42449780 | Msa1248370:CDS | 50.0% | |
| AAGGGTGGATATCCTGGTGT+TGG | + | chr8_2:42449776-42449795 | Msa1248370:intron | 50.0% | |
| AGGGTGGATATCCTGGTGTT+GGG | + | chr8_2:42449777-42449796 | Msa1248370:intron | 50.0% | |
| !! | CAGATGGTGACGGTTCTATG+AGG | + | chr8_2:42450205-42450224 | Msa1248370:intron | 50.0% |
| CAAAGACGATGACGCGTACT+TGG | - | chr8_2:42450252-42450271 | None:intergenic | 50.0% | |
| !!! | AGTTTTGGGCTGACTTGGTG+AGG | + | chr8_2:42450379-42450398 | Msa1248370:intron | 50.0% |
| !!! | GTTTTGGGCTGACTTGGTGA+GGG | + | chr8_2:42450380-42450399 | Msa1248370:intron | 50.0% |
| !! | GCTGACTTGGTGAGGGAAAA+TGG | + | chr8_2:42450387-42450406 | Msa1248370:intron | 50.0% |
| ! | ATGGCCTTGAGAACAATCCC+TGG | + | chr8_2:42450406-42450425 | Msa1248370:intron | 50.0% |
| ! | TGGCCTTGAGAACAATCCCT+GGG | + | chr8_2:42450407-42450426 | Msa1248370:intron | 50.0% |
| CAGCACAGGGGATGAAAACT+TGG | - | chr8_2:42450646-42450665 | None:intergenic | 50.0% | |
| CAGATGAGTTGTCAGCACAG+GGG | - | chr8_2:42450658-42450677 | None:intergenic | 50.0% | |
| GCAGATGAGTTGTCAGCACA+GGG | - | chr8_2:42450659-42450678 | None:intergenic | 50.0% | |
| TGCAGATGAGTTGTCAGCAC+AGG | - | chr8_2:42450660-42450679 | None:intergenic | 50.0% | |
| ! | AGGTGTTGCAATGAGTGTGG+AGG | + | chr8_2:42450752-42450771 | Msa1248370:CDS | 50.0% |
| AGCCAAAAAAACGCGGGAGA+AGG | + | chr8_2:42451103-42451122 | Msa1248370:CDS | 50.0% | |
| AAACGCGGGAGAAGGATCAA+AGG | + | chr8_2:42451111-42451130 | Msa1248370:CDS | 50.0% | |
| AACGCGGGAGAAGGATCAAA+GGG | + | chr8_2:42451112-42451131 | Msa1248370:CDS | 50.0% | |
| TGGCTAGCAGGCTGAGATTT+GGG | - | chr8_2:42451190-42451209 | None:intergenic | 50.0% | |
| TTGGCTAGCAGGCTGAGATT+TGG | - | chr8_2:42451191-42451210 | None:intergenic | 50.0% | |
| GCCTGCTAGCCAAAAAGACA+TGG | + | chr8_2:42451198-42451217 | Msa1248370:CDS | 50.0% | |
| !!! | GCCATGTCTTTTTGGCTAGC+AGG | - | chr8_2:42451202-42451221 | None:intergenic | 50.0% |
| TGGCTAGCATGCTGAGACAT+GGG | - | chr8_2:42451291-42451310 | None:intergenic | 50.0% | |
| CATGCTAGCCAGAAAGACGT+GGG | + | chr8_2:42451300-42451319 | Msa1248370:CDS | 50.0% | |
| AGCCAGAAAGACGTGGGAAA+AGG | + | chr8_2:42451306-42451325 | Msa1248370:CDS | 50.0% | |
| GCTCAGAAGGGTGGATATCC+TGG | + | chr8_2:42449770-42449789 | Msa1248370:CDS | 55.0% | |
| !! | TGGTGACGGTTCTATGAGGG+AGG | + | chr8_2:42450209-42450228 | Msa1248370:intron | 55.0% |
| CGCGTCATCGTCTTTGTGCT+TGG | + | chr8_2:42450256-42450275 | Msa1248370:intron | 55.0% | |
| CTGGCTAGCATGCTGAGACA+TGG | - | chr8_2:42451292-42451311 | None:intergenic | 55.0% | |
| GCATGCTAGCCAGAAAGACG+TGG | + | chr8_2:42451299-42451318 | Msa1248370:CDS | 55.0% | |
| GCGGGAGAAGGATCAAAGGG+AGG | + | chr8_2:42451115-42451134 | Msa1248370:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 42448861 | 42451339 | 42448861 | ID=Msa1248370;Name=Msa1248370 |
| chr8_2 | mRNA | 42448861 | 42451339 | 42448861 | ID=Msa1248370-mRNA-1;Parent=Msa1248370;Name=Msa1248370-mRNA-1;_AED=0.28;_eAED=0.29;_QI=0|0|0|0.85|0.16|0|7|0|433 |
| chr8_2 | exon | 42448861 | 42449032 | 42448861 | ID=Msa1248370-mRNA-1:exon:12850;Parent=Msa1248370-mRNA-1 |
| chr8_2 | exon | 42449066 | 42449137 | 42449066 | ID=Msa1248370-mRNA-1:exon:12851;Parent=Msa1248370-mRNA-1 |
| chr8_2 | exon | 42449147 | 42449359 | 42449147 | ID=Msa1248370-mRNA-1:exon:12852;Parent=Msa1248370-mRNA-1 |
| chr8_2 | exon | 42449408 | 42449599 | 42449408 | ID=Msa1248370-mRNA-1:exon:12853;Parent=Msa1248370-mRNA-1 |
| chr8_2 | exon | 42449627 | 42449793 | 42449627 | ID=Msa1248370-mRNA-1:exon:12854;Parent=Msa1248370-mRNA-1 |
| chr8_2 | exon | 42450543 | 42450782 | 42450543 | ID=Msa1248370-mRNA-1:exon:12855;Parent=Msa1248370-mRNA-1 |
| chr8_2 | exon | 42451097 | 42451339 | 42451097 | ID=Msa1248370-mRNA-1:exon:12856;Parent=Msa1248370-mRNA-1 |
| chr8_2 | CDS | 42448861 | 42449032 | 42448861 | ID=Msa1248370-mRNA-1:cds;Parent=Msa1248370-mRNA-1 |
| chr8_2 | CDS | 42449066 | 42449137 | 42449066 | ID=Msa1248370-mRNA-1:cds;Parent=Msa1248370-mRNA-1 |
| chr8_2 | CDS | 42449147 | 42449359 | 42449147 | ID=Msa1248370-mRNA-1:cds;Parent=Msa1248370-mRNA-1 |
| chr8_2 | CDS | 42449408 | 42449599 | 42449408 | ID=Msa1248370-mRNA-1:cds;Parent=Msa1248370-mRNA-1 |
| chr8_2 | CDS | 42449627 | 42449793 | 42449627 | ID=Msa1248370-mRNA-1:cds;Parent=Msa1248370-mRNA-1 |
| chr8_2 | CDS | 42450543 | 42450782 | 42450543 | ID=Msa1248370-mRNA-1:cds;Parent=Msa1248370-mRNA-1 |
| chr8_2 | CDS | 42451097 | 42451339 | 42451097 | ID=Msa1248370-mRNA-1:cds;Parent=Msa1248370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
