Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887600 | XP_003592350.1 | 80.935 | 278 | 53 | 0 | 283 | 560 | 63 | 340 | 1.60e-153 | 453 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887600 | sp|Q9FLH8|SCRK7_ARATH | 66.912 | 272 | 90 | 0 | 283 | 554 | 63 | 334 | 5.08e-123 | 368 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0213670 | Msa0887600 | 0.879205 | 1.506804e-69 | -8.615850e-47 |
| Msa0887600 | Msa0913860 | 0.925229 | 2.433839e-90 | -8.615850e-47 |
| Msa0887600 | Msa0988690 | 0.910217 | 2.398262e-82 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887600 | MtrunA17_Chr1g0177771 | 53.509 | 570 | 207 | 12 | 25 | 556 | 3 | 552 | 9.30e-170 | 493 |
| Msa0887600 | MtrunA17_Chr1g0204101 | 80.935 | 278 | 53 | 0 | 283 | 560 | 63 | 340 | 1.47e-157 | 453 |
| Msa0887600 | MtrunA17_Chr1g0183241 | 59.251 | 427 | 135 | 8 | 151 | 560 | 2 | 406 | 5.40e-154 | 447 |
| Msa0887600 | MtrunA17_Chr6g0474331 | 74.377 | 281 | 72 | 0 | 283 | 563 | 68 | 348 | 9.80e-147 | 426 |
| Msa0887600 | MtrunA17_Chr1g0177321 | 50.403 | 496 | 165 | 9 | 115 | 556 | 1 | 469 | 1.84e-126 | 379 |
| Msa0887600 | MtrunA17_Chr1g0171921 | 70.863 | 278 | 77 | 3 | 283 | 556 | 218 | 495 | 2.54e-119 | 362 |
| Msa0887600 | MtrunA17_Chr1g0171921 | 44.643 | 112 | 41 | 3 | 25 | 116 | 3 | 113 | 1.28e-16 | 82.8 |
| Msa0887600 | MtrunA17_Chr1g0183661 | 70.498 | 261 | 65 | 2 | 283 | 543 | 28 | 276 | 1.45e-118 | 352 |
| Msa0887600 | MtrunA17_Chr5g0434971 | 59.386 | 293 | 117 | 2 | 265 | 556 | 88 | 379 | 1.45e-110 | 335 |
| Msa0887600 | MtrunA17_Chr1g0188291 | 52.878 | 278 | 129 | 2 | 284 | 561 | 49 | 324 | 2.42e-98 | 301 |
| Msa0887600 | MtrunA17_Chr4g0033631 | 53.957 | 278 | 126 | 1 | 284 | 561 | 56 | 331 | 4.53e-97 | 298 |
| Msa0887600 | MtrunA17_Chr2g0329451 | 52.555 | 274 | 128 | 1 | 284 | 557 | 55 | 326 | 8.44e-95 | 292 |
| Msa0887600 | MtrunA17_Chr1g0176221 | 60.504 | 238 | 63 | 2 | 320 | 557 | 1 | 207 | 4.37e-81 | 253 |
| Msa0887600 | MtrunA17_Chr7g0246421 | 56.842 | 190 | 82 | 0 | 367 | 556 | 2 | 191 | 1.08e-67 | 217 |
| Msa0887600 | MtrunA17_Chr4g0020911 | 72.388 | 134 | 37 | 0 | 367 | 500 | 56 | 189 | 4.05e-55 | 184 |
| Msa0887600 | MtrunA17_Chr8g0386161 | 38.144 | 291 | 124 | 7 | 64 | 300 | 76 | 364 | 2.87e-46 | 173 |
| Msa0887600 | MtrunA17_Chr5g0419371 | 26.441 | 295 | 196 | 3 | 277 | 552 | 258 | 550 | 9.61e-30 | 123 |
| Msa0887600 | MtrunA17_Chr4g0008441 | 28.000 | 300 | 183 | 5 | 286 | 553 | 150 | 448 | 1.32e-24 | 107 |
| Msa0887600 | MtrunA17_Chr7g0246411 | 50.943 | 106 | 49 | 2 | 265 | 367 | 62 | 167 | 9.24e-23 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887600 | AT5G51830.2 | 66.912 | 272 | 90 | 0 | 283 | 554 | 63 | 334 | 5.16e-124 | 368 |
| Msa0887600 | AT5G51830.1 | 66.912 | 272 | 90 | 0 | 283 | 554 | 63 | 334 | 5.16e-124 | 368 |
| Msa0887600 | AT1G66430.1 | 58.333 | 300 | 123 | 2 | 265 | 563 | 86 | 384 | 8.44e-115 | 346 |
| Msa0887600 | AT4G10260.1 | 56.554 | 267 | 114 | 2 | 284 | 550 | 47 | 311 | 1.02e-99 | 305 |
| Msa0887600 | AT3G59480.1 | 52.399 | 271 | 127 | 2 | 284 | 554 | 51 | 319 | 3.88e-94 | 291 |
| Msa0887600 | AT1G06030.1 | 51.825 | 274 | 130 | 1 | 284 | 557 | 52 | 323 | 4.28e-94 | 291 |
| Msa0887600 | AT2G31390.1 | 52.347 | 277 | 130 | 1 | 284 | 560 | 50 | 324 | 1.21e-92 | 287 |
| Msa0887600 | AT1G06020.1 | 50.365 | 274 | 134 | 1 | 284 | 557 | 51 | 322 | 2.57e-90 | 282 |
| Msa0887600 | AT1G50390.1 | 42.197 | 173 | 69 | 1 | 388 | 560 | 1 | 142 | 7.73e-37 | 134 |
| Msa0887600 | AT5G63540.2 | 42.009 | 219 | 98 | 6 | 39 | 229 | 70 | 287 | 2.62e-36 | 144 |
| Msa0887600 | AT5G63540.1 | 41.860 | 215 | 96 | 6 | 39 | 225 | 70 | 283 | 6.52e-36 | 142 |
| Msa0887600 | AT3G54090.1 | 29.139 | 302 | 178 | 6 | 286 | 554 | 160 | 458 | 1.79e-28 | 119 |
| Msa0887600 | AT1G69200.1 | 26.786 | 280 | 185 | 4 | 277 | 537 | 254 | 532 | 1.96e-27 | 117 |
Find 147 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATATTAGCACTAGGATTT+TGG | 0.158504 | 6_1:-49713614 | None:intergenic |
| CAACTTGGAGATTCGTTAAA+TGG | 0.186789 | 6_1:+49711262 | Msa0887600:CDS |
| ACTTGCCTGTGATCCTTATT+AGG | 0.223132 | 6_1:-49712168 | None:intergenic |
| TACGGTGGCGGCGGCGGCGG+CGG | 0.260934 | 6_1:-49711084 | None:intergenic |
| CCTGAAAATATTAAAGTATT+GGG | 0.270057 | 6_1:+49711895 | Msa0887600:CDS |
| GGACTTCTCCCATCACCTTT+TGG | 0.283004 | 6_1:+49711192 | Msa0887600:CDS |
| TCCTAGTGCTAATATGCTTC+TGG | 0.296089 | 6_1:+49713620 | Msa0887600:CDS |
| CCATTATGGTTCCATGAGTT+TGG | 0.297448 | 6_1:+49713780 | Msa0887600:CDS |
| TAGGTTGGAGCAGATGAATT+TGG | 0.306305 | 6_1:+49713462 | Msa0887600:intron |
| AGGTTGGAGCAGATGAATTT+GGG | 0.318393 | 6_1:+49713463 | Msa0887600:intron |
| TTGTTTGGCATCTCTAAGTT+GGG | 0.319507 | 6_1:+49712971 | Msa0887600:CDS |
| CAGGCTAAAATATTCCATTA+TGG | 0.325981 | 6_1:+49713766 | Msa0887600:intron |
| ATACGCCATCTAGGGGAAAA+AGG | 0.327380 | 6_1:+49711953 | Msa0887600:CDS |
| TCCAGCGCCTTGTGGATTAA+AGG | 0.327589 | 6_1:+49711691 | Msa0887600:CDS |
| AAGAAGTGATATTCCAAGTA+TGG | 0.330309 | 6_1:+49712398 | Msa0887600:CDS |
| TGATGGTCCCTTCGTATTGC+AGG | 0.331157 | 6_1:+49711402 | Msa0887600:CDS |
| ATGGAATAGAGAACCTAATA+AGG | 0.343105 | 6_1:+49712155 | Msa0887600:CDS |
| CATGCCACCAGTGCGTTGTT+TGG | 0.347843 | 6_1:+49712956 | Msa0887600:CDS |
| TGCACATAGCAGGTAACTTA+TGG | 0.354282 | 6_1:+49712136 | Msa0887600:CDS |
| AGATGAATTTGGGTATATAT+TGG | 0.369400 | 6_1:+49713473 | Msa0887600:CDS |
| AACAAAAGCCGATTTGGTTA+TGG | 0.371957 | 6_1:-49713553 | None:intergenic |
| CAAAATAATGTTGATACATC+TGG | 0.377336 | 6_1:+49713510 | Msa0887600:CDS |
| TACTACGGTGGCGGCGGCGG+CGG | 0.378056 | 6_1:-49711087 | None:intergenic |
| TGAATTACCTTGAAAATACT+TGG | 0.378570 | 6_1:-49714554 | None:intergenic |
| AAGTGTAACAAAAGCCGATT+TGG | 0.378760 | 6_1:-49713559 | None:intergenic |
| CGAGTTTGAGATTGGCACTA+TGG | 0.381322 | 6_1:+49713881 | Msa0887600:CDS |
| AAGCTTCTAATTGTTACTAA+AGG | 0.390317 | 6_1:+49714185 | Msa0887600:CDS |
| CCAAACTCATGGAACCATAA+TGG | 0.394145 | 6_1:-49713780 | None:intergenic |
| TTCTATTGCCATAACCAAAT+CGG | 0.398872 | 6_1:+49713545 | Msa0887600:CDS |
| TCCTGAAAATATTAAAGTAT+TGG | 0.399993 | 6_1:+49711894 | Msa0887600:CDS |
| GTCGATGAAATTATCAATAT+CGG | 0.400463 | 6_1:+49711569 | Msa0887600:CDS |
| AGCTTCTAATTGTTACTAAA+GGG | 0.405353 | 6_1:+49714186 | Msa0887600:CDS |
| AGTCCTGTACTGCAACATTC+AGG | 0.407210 | 6_1:+49714906 | Msa0887600:three_prime_UTR |
| GTTGTTTGGCATCTCTAAGT+TGG | 0.417158 | 6_1:+49712970 | Msa0887600:CDS |
| TCGGAACCCGTCGAAATCTC+TGG | 0.422235 | 6_1:+49711157 | Msa0887600:CDS |
| GTGCTCATAACTACTCTTGA+TGG | 0.423814 | 6_1:+49711385 | Msa0887600:CDS |
| ATGAACTAAATACGCCATCT+AGG | 0.425379 | 6_1:+49711944 | Msa0887600:CDS |
| AATCTCTGGCGATGACTTGA+CGG | 0.425637 | 6_1:+49711171 | Msa0887600:CDS |
| ATATGATCCGAGTTTGAGAT+TGG | 0.429480 | 6_1:+49713873 | Msa0887600:CDS |
| ATCTACTACGGTGGCGGCGG+CGG | 0.432026 | 6_1:-49711090 | None:intergenic |
| AACGTTGAGCCACCGTGAAC+GGG | 0.435842 | 6_1:-49712114 | None:intergenic |
| GAATCTAGCCCATGTCATAA+AGG | 0.438471 | 6_1:+49713945 | Msa0887600:CDS |
| GCCACAAGTTCCCTTGAAAT+CGG | 0.441669 | 6_1:+49711138 | Msa0887600:CDS |
| AAAACATCAAGGGCATCAAC+AGG | 0.443236 | 6_1:-49711668 | None:intergenic |
| TAGCCTGAATGTTGCAGTAC+AGG | 0.445724 | 6_1:-49714909 | None:intergenic |
| GGCGTATTTAGTTCATCAAC+CGG | 0.448030 | 6_1:-49711937 | None:intergenic |
| TTCGACGGGTTCCGATTTCA+AGG | 0.451889 | 6_1:-49711149 | None:intergenic |
| CTGGTGATGCATTTGTTAGT+GGG | 0.458027 | 6_1:+49714507 | Msa0887600:CDS |
| GCTGGTGATGCATTTGTTAG+TGG | 0.461233 | 6_1:+49714506 | Msa0887600:CDS |
| TGACAGCTCGCATAATCAAA+AGG | 0.464975 | 6_1:-49714962 | None:intergenic |
| ACCTTTAATCCACAAGGCGC+TGG | 0.469198 | 6_1:-49711692 | None:intergenic |
| TTATGAGCACTTGAGAAGTA+AGG | 0.469831 | 6_1:-49711372 | None:intergenic |
| ATTATCAATATCGGTTGTCC+CGG | 0.471772 | 6_1:+49711578 | Msa0887600:CDS |
| CCAGCACCAGTTGTGTCAAC+AGG | 0.471899 | 6_1:-49714488 | None:intergenic |
| CAGGCGCACACTCAAATCCT+TGG | 0.474469 | 6_1:-49711649 | None:intergenic |
| GATTGGTTTGAAGAGAGATA+AGG | 0.476714 | 6_1:+49711222 | Msa0887600:CDS |
| GGCCATCAGCCGAGGCTGCT+CGG | 0.478564 | 6_1:+49713902 | Msa0887600:CDS |
| CTGCAGGCGCCTTTGAAACC+CGG | 0.483022 | 6_1:-49711597 | None:intergenic |
| AAGTGTAAAACAGTCGGAAT+CGG | 0.487194 | 6_1:+49711027 | Msa0887600:CDS |
| TTCCGAGCAGCCTCGGCTGA+TGG | 0.490443 | 6_1:-49713904 | None:intergenic |
| CAACGTTGAGCCACCGTGAA+CGG | 0.492640 | 6_1:-49712115 | None:intergenic |
| TTCAAGGGAACTTGTGGCTG+AGG | 0.492988 | 6_1:-49711133 | None:intergenic |
| TTACACTTAGAGATGATGAA+TGG | 0.496161 | 6_1:+49713574 | Msa0887600:CDS |
| GTTGAACCTGTTGACACAAC+TGG | 0.496302 | 6_1:+49714482 | Msa0887600:CDS |
| CTGAGGCTCAACTACGGCTG+AGG | 0.496800 | 6_1:-49711116 | None:intergenic |
| CCTGTTGACACAACTGGTGC+TGG | 0.498429 | 6_1:+49714488 | Msa0887600:CDS |
| GACAGCTCGCATAATCAAAA+GGG | 0.499502 | 6_1:-49714961 | None:intergenic |
| GGAATGGTATAATGAGCATA+TGG | 0.500805 | 6_1:+49713923 | Msa0887600:CDS |
| GGCTCAACGTTGCACATAGC+AGG | 0.504330 | 6_1:+49712126 | Msa0887600:CDS |
| TGAACTAAATACGCCATCTA+GGG | 0.505518 | 6_1:+49711945 | Msa0887600:CDS |
| TGTTTGGCATCTCTAAGTTG+GGG | 0.510207 | 6_1:+49712972 | Msa0887600:CDS |
| TATAGAACAAAATAACACTT+TGG | 0.512451 | 6_1:-49714799 | None:intergenic |
| TCCGATTTCAAGGGAACTTG+TGG | 0.512790 | 6_1:-49711139 | None:intergenic |
| CTTGAAGGCGTTTGTTGCGA+AGG | 0.514631 | 6_1:+49712368 | Msa0887600:intron |
| TTCTAATTGTTACTAAAGGG+TGG | 0.516676 | 6_1:+49714189 | Msa0887600:CDS |
| AAAATTTACCTTTATGACAT+GGG | 0.517576 | 6_1:-49713953 | None:intergenic |
| TAGCGAAATATAATGCGTCT+TGG | 0.530275 | 6_1:-49714669 | None:intergenic |
| GCAAGATGAGCCAACTTGCA+TGG | 0.531183 | 6_1:-49713811 | None:intergenic |
| TCGGTTGTCCCGGGTTTCAA+AGG | 0.531274 | 6_1:+49711588 | Msa0887600:CDS |
| AGTGATTTCACCTTCCGACT+TGG | 0.531440 | 6_1:+49714861 | Msa0887600:three_prime_UTR |
| TCCCGAGTTCCAAAAGGTGA+TGG | 0.533600 | 6_1:-49711201 | None:intergenic |
| AGAGTTGATGATCCCGTTCA+CGG | 0.537537 | 6_1:+49712102 | Msa0887600:CDS |
| CTGAAAATATTAAAGTATTG+GGG | 0.539701 | 6_1:+49711896 | Msa0887600:CDS |
| TTCATCTGCATTTATAAGCA+AGG | 0.542858 | 6_1:+49712997 | Msa0887600:CDS |
| GCTGATTGTCTTCGCCAACT+TGG | 0.543091 | 6_1:+49711247 | Msa0887600:CDS |
| GAATTACCTTGAAAATACTT+GGG | 0.544694 | 6_1:-49714553 | None:intergenic |
| AACATATAAATATGTTGACT+TGG | 0.546312 | 6_1:+49714933 | Msa0887600:three_prime_UTR |
| CGTCGGTCATAAACAACTGC+AGG | 0.548342 | 6_1:-49711613 | None:intergenic |
| TGGCTCATCAACCAAACTCA+TGG | 0.548985 | 6_1:-49713791 | None:intergenic |
| CATTTAACGAATCTCCAAGT+TGG | 0.549382 | 6_1:-49711261 | None:intergenic |
| TAAAATTTACCTTTATGACA+TGG | 0.549438 | 6_1:-49713954 | None:intergenic |
| AACCAATCCCGAGTTCCAAA+AGG | 0.549448 | 6_1:-49711207 | None:intergenic |
| GTTTGGCATCTCTAAGTTGG+GGG | 0.549953 | 6_1:+49712973 | Msa0887600:CDS |
| TAAAGGGCACCTTCTTGATG+AGG | 0.550549 | 6_1:-49713665 | None:intergenic |
| TTGGACTCTTTGAGCACCGT+CGG | 0.552345 | 6_1:-49711630 | None:intergenic |
| TATGAGCACTTGAGAAGTAA+GGG | 0.552655 | 6_1:-49711371 | None:intergenic |
| GGGAGGATTAGTTGAGCAGC+CGG | 0.558205 | 6_1:+49711918 | Msa0887600:CDS |
| TCATCGCCAGAGATTTCGAC+GGG | 0.559201 | 6_1:-49711163 | None:intergenic |
| TGCAGGCGCCTTTGAAACCC+GGG | 0.560661 | 6_1:-49711596 | None:intergenic |
| TTATCAATATCGGTTGTCCC+GGG | 0.560699 | 6_1:+49711579 | Msa0887600:CDS |
| CATAGTGCCAATCTCAAACT+CGG | 0.562066 | 6_1:-49713880 | None:intergenic |
| GAGAACCTAATAAGGATCAC+AGG | 0.562507 | 6_1:+49712163 | Msa0887600:CDS |
| TTTGGCATCTCTAAGTTGGG+GGG | 0.565154 | 6_1:+49712974 | Msa0887600:CDS |
| CTGCAGTTGTTTATGACCGA+CGG | 0.566787 | 6_1:+49711614 | Msa0887600:CDS |
| TCTAATTGTTACTAAAGGGT+GGG | 0.567673 | 6_1:+49714190 | Msa0887600:CDS |
| TAGCACTACCACAAGAATTG+AGG | 0.570518 | 6_1:-49711339 | None:intergenic |
| CTGATCTACTACGGTGGCGG+CGG | 0.570680 | 6_1:-49711093 | None:intergenic |
| TCAGCCGAGGCTGCTCGGAA+TGG | 0.571140 | 6_1:+49713907 | Msa0887600:CDS |
| TATACCATTCCGAGCAGCCT+CGG | 0.576856 | 6_1:-49713911 | None:intergenic |
| GCGATCACAGTGACGGAGAG+AGG | 0.576921 | 6_1:+49714703 | Msa0887600:CDS |
| CCCGAGTTCCAAAAGGTGAT+GGG | 0.578397 | 6_1:-49711200 | None:intergenic |
| CGATCACAGTGACGGAGAGA+GGG | 0.581432 | 6_1:+49714704 | Msa0887600:CDS |
| AATTGTTACTAAAGGGTGGG+AGG | 0.590466 | 6_1:+49714193 | Msa0887600:CDS |
| CGGCTGAGGCTGATCTACTA+CGG | 0.594384 | 6_1:-49711102 | None:intergenic |
| TGATCATAACCTCATCAAGA+AGG | 0.598780 | 6_1:+49713656 | Msa0887600:CDS |
| GACGGTGCTCAAAGAGTCCA+AGG | 0.599720 | 6_1:+49711632 | Msa0887600:CDS |
| TGAAAATATTAAAGTATTGG+GGG | 0.600555 | 6_1:+49711897 | Msa0887600:CDS |
| GGCACTATGGCCATCAGCCG+AGG | 0.605030 | 6_1:+49713894 | Msa0887600:CDS |
| TCGACGGGTTCCGATTTCAA+GGG | 0.609396 | 6_1:-49711148 | None:intergenic |
| GGTTGATGAGCCATGCAAGT+TGG | 0.610523 | 6_1:+49713801 | Msa0887600:CDS |
| TCCAGAAGCATATTAGCACT+AGG | 0.613601 | 6_1:-49713621 | None:intergenic |
| AGAGATGCCAAACAACGCAC+TGG | 0.620220 | 6_1:-49712963 | None:intergenic |
| GAAAATATTAAAGTATTGGG+GGG | 0.624901 | 6_1:+49711898 | Msa0887600:CDS |
| TGTGCTACAGAGATTCCGAC+TGG | 0.629797 | 6_1:-49711052 | None:intergenic |
| AGAGTCTTCAGCAATTCTCA+AGG | 0.632621 | 6_1:-49713836 | None:intergenic |
| GGAACCTACCTGCAATACGA+AGG | 0.636337 | 6_1:-49711410 | None:intergenic |
| GCTATCAAAACCAAGTCGGA+AGG | 0.637115 | 6_1:-49714871 | None:intergenic |
| GAACTAAATACGCCATCTAG+GGG | 0.637946 | 6_1:+49711946 | Msa0887600:CDS |
| ATTGTTACTAAAGGGTGGGA+GGG | 0.642680 | 6_1:+49714194 | Msa0887600:CDS |
| TAGTGCTATCAAAACCAAGT+CGG | 0.644703 | 6_1:-49714875 | None:intergenic |
| GATCACAGTGACGGAGAGAG+GGG | 0.644841 | 6_1:+49714705 | Msa0887600:CDS |
| GAACCTACCTGCAATACGAA+GGG | 0.645182 | 6_1:-49711409 | None:intergenic |
| AGGCTGATCTACTACGGTGG+CGG | 0.646453 | 6_1:-49711096 | None:intergenic |
| GTCATCGCCAGAGATTTCGA+CGG | 0.647583 | 6_1:-49711164 | None:intergenic |
| CTGAGGCTGATCTACTACGG+TGG | 0.650238 | 6_1:-49711099 | None:intergenic |
| GATGCCAAACAACGCACTGG+TGG | 0.655773 | 6_1:-49712960 | None:intergenic |
| TCTCTCCGTCACTGTGATCG+CGG | 0.666326 | 6_1:-49714701 | None:intergenic |
| ACAGCTCGCATAATCAAAAG+GGG | 0.669798 | 6_1:-49714960 | None:intergenic |
| TTGTGGCTGAGGCTCAACTA+CGG | 0.670261 | 6_1:-49711122 | None:intergenic |
| CAGTCGGAATCGGAACCAGT+CGG | 0.671295 | 6_1:+49711037 | Msa0887600:CDS |
| AGCACTTGAGAAGTAAGGGT+AGG | 0.672625 | 6_1:-49711367 | None:intergenic |
| ATGTTGATACATCTGGCATG+CGG | 0.677431 | 6_1:+49713517 | Msa0887600:CDS |
| ATGTGCCGCGATCACAGTGA+CGG | 0.677848 | 6_1:+49714696 | Msa0887600:CDS |
| GAAGAAACCTTTAATCCACA+AGG | 0.724250 | 6_1:-49711698 | None:intergenic |
| TCTAATGTAGAAGTGATACG+TGG | 0.725347 | 6_1:+49711856 | Msa0887600:CDS |
| GTTGATGATCCCGTTCACGG+TGG | 0.742555 | 6_1:+49712105 | Msa0887600:CDS |
| GGGTCGTAGATATTACACCA+AGG | 0.763883 | 6_1:+49714214 | Msa0887600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAATTAA+AGG | - | chr6_1:49712791-49712810 | None:intergenic | 0.0% |
| !!! | TTCAATTTTTATTTTTTTAC+CGG | - | chr6_1:49712833-49712852 | None:intergenic | 10.0% |
| !!! | ACATATATTACATTTTATAA+CGG | - | chr6_1:49714835-49714854 | None:intergenic | 10.0% |
| !! | AATACAATAAATTAACTGAA+TGG | - | chr6_1:49711434-49711453 | None:intergenic | 15.0% |
| !! | TTATATATATTCAGATGAAA+AGG | - | chr6_1:49711739-49711758 | None:intergenic | 15.0% |
| !!! | ACTGATTTGATTTAATTTTT+TGG | - | chr6_1:49712537-49712556 | None:intergenic | 15.0% |
| !! | AGTAAATACATAATATTTCT+AGG | - | chr6_1:49713341-49713360 | None:intergenic | 15.0% |
| !!! | ATATTTAAAAAGCTTTTTCA+AGG | + | chr6_1:49714155-49714174 | Msa0887600:CDS | 15.0% |
| !!! | TATTTAAAAAGCTTTTTCAA+GGG | + | chr6_1:49714156-49714175 | Msa0887600:CDS | 15.0% |
| !! | CAAAGAAAATAATTAAATGA+GGG | - | chr6_1:49714271-49714290 | None:intergenic | 15.0% |
| !! | GTTAATTTATTGTATTCTCA+AGG | + | chr6_1:49711438-49711457 | Msa0887600:intron | 20.0% |
| !! | TCCTGAAAATATTAAAGTAT+TGG | + | chr6_1:49711894-49711913 | Msa0887600:CDS | 20.0% |
| !!! | CCTGAAAATATTAAAGTATT+GGG | + | chr6_1:49711895-49711914 | Msa0887600:CDS | 20.0% |
| !!! | CTGAAAATATTAAAGTATTG+GGG | + | chr6_1:49711896-49711915 | Msa0887600:CDS | 20.0% |
| !!! | TGAAAATATTAAAGTATTGG+GGG | + | chr6_1:49711897-49711916 | Msa0887600:CDS | 20.0% |
| !! | TACAAATTAATCATTCCAAT+TGG | + | chr6_1:49711976-49711995 | Msa0887600:intron | 20.0% |
| !!! | TGGAAAACTTTTAGTTTAAT+AGG | + | chr6_1:49712022-49712041 | Msa0887600:intron | 20.0% |
| !!! | GGAAAACTTTTAGTTTAATA+GGG | + | chr6_1:49712023-49712042 | Msa0887600:intron | 20.0% |
| !!! | TAGGTTGATTTTAATTTTTC+AGG | + | chr6_1:49712210-49712229 | Msa0887600:intron | 20.0% |
| !! | AATCTAACTCATTCAATATT+AGG | - | chr6_1:49712450-49712469 | None:intergenic | 20.0% |
| !! | TGTAAAGTTGCAAAATAATT+TGG | + | chr6_1:49712506-49712525 | Msa0887600:intron | 20.0% |
| !!! | TTTTGAATTCAACTATAACA+TGG | - | chr6_1:49712710-49712729 | None:intergenic | 20.0% |
| !!! | AACTTAATAATGATGTTTTG+TGG | + | chr6_1:49712745-49712764 | Msa0887600:intron | 20.0% |
| !! | TATTTATTGACATGGTTATT+TGG | + | chr6_1:49713036-49713055 | Msa0887600:intron | 20.0% |
| !! | TTAAGAAATCTGTTATATGT+TGG | + | chr6_1:49713112-49713131 | Msa0887600:intron | 20.0% |
| !! | TAAGAAATCTGTTATATGTT+GGG | + | chr6_1:49713113-49713132 | Msa0887600:intron | 20.0% |
| !! | AAATAGAAAATACGAGTAAA+AGG | - | chr6_1:49713246-49713265 | None:intergenic | 20.0% |
| !! | AAAATTTACCTTTATGACAT+GGG | - | chr6_1:49713956-49713975 | None:intergenic | 20.0% |
| !! | TAAAATTTACCTTTATGACA+TGG | - | chr6_1:49713957-49713976 | None:intergenic | 20.0% |
| !!! | ATTACTTTTTTGATTGATGT+TGG | + | chr6_1:49714110-49714129 | Msa0887600:CDS | 20.0% |
| !! | GCAAAGAAAATAATTAAATG+AGG | - | chr6_1:49714272-49714291 | None:intergenic | 20.0% |
| !! | TTAGAAAAAATTTCAGTGTT+TGG | + | chr6_1:49714605-49714624 | Msa0887600:intron | 20.0% |
| !! | TATAGAACAAAATAACACTT+TGG | - | chr6_1:49714802-49714821 | None:intergenic | 20.0% |
| !!! | AAAGTGTTATTTTGTTCTAT+AGG | + | chr6_1:49714801-49714820 | Msa0887600:three_prime_UTR | 20.0% |
| !!! | AACATATAAATATGTTGACT+TGG | + | chr6_1:49714933-49714952 | Msa0887600:three_prime_UTR | 20.0% |
| ! | TAAATTATGCTCCTATATGA+TGG | + | chr6_1:49711473-49711492 | Msa0887600:intron | 25.0% |
| ! | TAATCGAATTTCCATCATAT+AGG | - | chr6_1:49711487-49711506 | None:intergenic | 25.0% |
| ! | GTCGATGAAATTATCAATAT+CGG | + | chr6_1:49711569-49711588 | Msa0887600:CDS | 25.0% |
| !! | CCCAATACTTTAATATTTTC+AGG | - | chr6_1:49711898-49711917 | None:intergenic | 25.0% |
| !!! | GAAAATATTAAAGTATTGGG+GGG | + | chr6_1:49711898-49711917 | Msa0887600:CDS | 25.0% |
| !! | AACTAAAAGTTTTCCATTGT+TGG | - | chr6_1:49712018-49712037 | None:intergenic | 25.0% |
| ! | AAAAAAGTTTGCACCAAATT+AGG | - | chr6_1:49712051-49712070 | None:intergenic | 25.0% |
| ! | TGTTTAGGTGAAATGTTAAT+AGG | + | chr6_1:49712930-49712949 | Msa0887600:intron | 25.0% |
| ! | TATGTCTCTATTTATTGACA+TGG | + | chr6_1:49713028-49713047 | Msa0887600:intron | 25.0% |
| !! | AGTTTTCAACAAATCAAACA+TGG | - | chr6_1:49713086-49713105 | None:intergenic | 25.0% |
| !! | TAAACACAGATTTTCATGTT+TGG | + | chr6_1:49713194-49713213 | Msa0887600:intron | 25.0% |
| !!! | TTCCGAATTTTAATCTATGT+TGG | + | chr6_1:49713400-49713419 | Msa0887600:intron | 25.0% |
| ! | AGCCAACATAGATTAAAATT+CGG | - | chr6_1:49713405-49713424 | None:intergenic | 25.0% |
| ! | AGATGAATTTGGGTATATAT+TGG | + | chr6_1:49713473-49713492 | Msa0887600:CDS | 25.0% |
| ! | CAAAATAATGTTGATACATC+TGG | + | chr6_1:49713510-49713529 | Msa0887600:CDS | 25.0% |
| ! | AAACAGAGATGGAAATTAAA+GGG | - | chr6_1:49713684-49713703 | None:intergenic | 25.0% |
| ! | TAAACAGAGATGGAAATTAA+AGG | - | chr6_1:49713685-49713704 | None:intergenic | 25.0% |
| ! | AAGCTTCTAATTGTTACTAA+AGG | + | chr6_1:49714185-49714204 | Msa0887600:CDS | 25.0% |
| ! | AGCTTCTAATTGTTACTAAA+GGG | + | chr6_1:49714186-49714205 | Msa0887600:CDS | 25.0% |
| !! | TGATTACTAAATTTTTGTGC+AGG | + | chr6_1:49714430-49714449 | Msa0887600:intron | 25.0% |
| !! | AATTTTTGTGCAGGATTTTA+AGG | + | chr6_1:49714439-49714458 | Msa0887600:intron | 25.0% |
| !! | ATTTTTGTGCAGGATTTTAA+GGG | + | chr6_1:49714440-49714459 | Msa0887600:intron | 25.0% |
| ! | GAATTACCTTGAAAATACTT+GGG | - | chr6_1:49714556-49714575 | None:intergenic | 25.0% |
| ! | TGAATTACCTTGAAAATACT+TGG | - | chr6_1:49714557-49714576 | None:intergenic | 25.0% |
| !!! | TAAACAGATTTCCGCTTTTT+TGG | - | chr6_1:49711299-49711318 | None:intergenic | 30.0% |
| GTTTAATAGGGAACCTAATT+TGG | + | chr6_1:49712035-49712054 | Msa0887600:intron | 30.0% | |
| ATGGAATAGAGAACCTAATA+AGG | + | chr6_1:49712155-49712174 | Msa0887600:CDS | 30.0% | |
| ACCTATCTATTCTCTGTTTA+GGG | - | chr6_1:49712195-49712214 | None:intergenic | 30.0% | |
| AACCTATCTATTCTCTGTTT+AGG | - | chr6_1:49712196-49712215 | None:intergenic | 30.0% | |
| CATATTATATCAGTCAGTCA+TGG | + | chr6_1:49712238-49712257 | Msa0887600:intron | 30.0% | |
| ! | ATTTCAGAGTATCATCATTG+TGG | - | chr6_1:49712297-49712316 | None:intergenic | 30.0% |
| AAGAAGTGATATTCCAAGTA+TGG | + | chr6_1:49712398-49712417 | Msa0887600:CDS | 30.0% | |
| !!! | TACTTTTTCTTGTCCATACT+TGG | - | chr6_1:49712414-49712433 | None:intergenic | 30.0% |
| TTCATCTGCATTTATAAGCA+AGG | + | chr6_1:49712997-49713016 | Msa0887600:CDS | 30.0% | |
| ! | ATTGATTACGCTTTTCTGAA+TGG | + | chr6_1:49713145-49713164 | Msa0887600:intron | 30.0% |
| TTTAACAAGAAAACGAGAAG+AGG | - | chr6_1:49713295-49713314 | None:intergenic | 30.0% | |
| TTCTATTGCCATAACCAAAT+CGG | + | chr6_1:49713545-49713564 | Msa0887600:CDS | 30.0% | |
| TTACACTTAGAGATGATGAA+TGG | + | chr6_1:49713574-49713593 | Msa0887600:CDS | 30.0% | |
| ! | CCACATTTTATAAACAGAGA+TGG | - | chr6_1:49713695-49713714 | None:intergenic | 30.0% |
| CCATCTCTGTTTATAAAATG+TGG | + | chr6_1:49713692-49713711 | Msa0887600:intron | 30.0% | |
| ACTTAAACCATAGGTCTTTA+TGG | - | chr6_1:49713718-49713737 | None:intergenic | 30.0% | |
| !! | TTTAATTTTATGCTGACTGC+AGG | + | chr6_1:49713747-49713766 | Msa0887600:intron | 30.0% |
| CAGGCTAAAATATTCCATTA+TGG | + | chr6_1:49713766-49713785 | Msa0887600:intron | 30.0% | |
| GAAAATAGAATGAAGTGCAA+TGG | - | chr6_1:49714031-49714050 | None:intergenic | 30.0% | |
| AATAACACTTCAGATAGACT+CGG | - | chr6_1:49714059-49714078 | None:intergenic | 30.0% | |
| TTCTAATTGTTACTAAAGGG+TGG | + | chr6_1:49714189-49714208 | Msa0887600:CDS | 30.0% | |
| TCTAATTGTTACTAAAGGGT+GGG | + | chr6_1:49714190-49714209 | Msa0887600:CDS | 30.0% | |
| ATTATAAAACCTACGACCTT+TGG | - | chr6_1:49714248-49714267 | None:intergenic | 30.0% | |
| !! | GTTGATGAAGTTATTTTGTG+TGG | + | chr6_1:49714629-49714648 | Msa0887600:intron | 30.0% |
| ! | GGGAAAAAGTGTAAAACAGT+CGG | + | chr6_1:49711021-49711040 | Msa0887600:CDS | 35.0% |
| AAGTGTAAAACAGTCGGAAT+CGG | + | chr6_1:49711027-49711046 | Msa0887600:CDS | 35.0% | |
| !! | GATTGGTTTGAAGAGAGATA+AGG | + | chr6_1:49711222-49711241 | Msa0887600:CDS | 35.0% |
| CATTTAACGAATCTCCAAGT+TGG | - | chr6_1:49711264-49711283 | None:intergenic | 35.0% | |
| CAACTTGGAGATTCGTTAAA+TGG | + | chr6_1:49711262-49711281 | Msa0887600:CDS | 35.0% | |
| CTTTGATGTCTCCAAAAAAG+CGG | + | chr6_1:49711285-49711304 | Msa0887600:CDS | 35.0% | |
| ! | TTTTCTGACCTCAATTCTTG+TGG | + | chr6_1:49711331-49711350 | Msa0887600:CDS | 35.0% |
| TATGAGCACTTGAGAAGTAA+GGG | - | chr6_1:49711374-49711393 | None:intergenic | 35.0% | |
| TTATGAGCACTTGAGAAGTA+AGG | - | chr6_1:49711375-49711394 | None:intergenic | 35.0% | |
| ! | ATTATCAATATCGGTTGTCC+CGG | + | chr6_1:49711578-49711597 | Msa0887600:CDS | 35.0% |
| GAAGAAACCTTTAATCCACA+AGG | - | chr6_1:49711701-49711720 | None:intergenic | 35.0% | |
| CAGATGAAAAGGATGTATAG+TGG | - | chr6_1:49711728-49711747 | None:intergenic | 35.0% | |
| ! | TCCGAGTAAGGATTAATTTG+AGG | + | chr6_1:49711805-49711824 | Msa0887600:intron | 35.0% |
| CCCTCAAATTAATCCTTACT+CGG | - | chr6_1:49711809-49711828 | None:intergenic | 35.0% | |
| ! | CCGAGTAAGGATTAATTTGA+GGG | + | chr6_1:49711806-49711825 | Msa0887600:intron | 35.0% |
| ! | AGGGATGTATTGATACTTGT+AGG | + | chr6_1:49711825-49711844 | Msa0887600:intron | 35.0% |
| TCTAATGTAGAAGTGATACG+TGG | + | chr6_1:49711856-49711875 | Msa0887600:CDS | 35.0% | |
| !! | AATATTAAAGTATTGGGGGG+AGG | + | chr6_1:49711901-49711920 | Msa0887600:CDS | 35.0% |
| ATGAACTAAATACGCCATCT+AGG | + | chr6_1:49711944-49711963 | Msa0887600:CDS | 35.0% | |
| TGAACTAAATACGCCATCTA+GGG | + | chr6_1:49711945-49711964 | Msa0887600:CDS | 35.0% | |
| ACCCTAAACAGAGAATAGAT+AGG | + | chr6_1:49712191-49712210 | Msa0887600:intron | 35.0% | |
| ATATCAGTCAGTCATGGTTA+CGG | + | chr6_1:49712244-49712263 | Msa0887600:intron | 35.0% | |
| !!! | ACGAACAATTCTTGTTTTGC+AGG | + | chr6_1:49712852-49712871 | Msa0887600:intron | 35.0% |
| ! | TGTTTTGCAGGTAATTCTGA+TGG | + | chr6_1:49712864-49712883 | Msa0887600:intron | 35.0% |
| ! | GTTTTGCAGGTAATTCTGAT+GGG | + | chr6_1:49712865-49712884 | Msa0887600:intron | 35.0% |
| TTGTTTGGCATCTCTAAGTT+GGG | + | chr6_1:49712971-49712990 | Msa0887600:CDS | 35.0% | |
| ! | TGGTTTCTTGTTACTTCTAC+AGG | + | chr6_1:49713056-49713075 | Msa0887600:intron | 35.0% |
| AATGGTATGTGTGTGTTTCA+AGG | + | chr6_1:49713163-49713182 | Msa0887600:intron | 35.0% | |
| ! | GTTAAAGTTCGTGCATTTTG+AGG | + | chr6_1:49713216-49713235 | Msa0887600:intron | 35.0% |
| !! | AACAAAAGCCGATTTGGTTA+TGG | - | chr6_1:49713556-49713575 | None:intergenic | 35.0% |
| AAGTGTAACAAAAGCCGATT+TGG | - | chr6_1:49713562-49713581 | None:intergenic | 35.0% | |
| ! | GCATATTAGCACTAGGATTT+TGG | - | chr6_1:49713617-49713636 | None:intergenic | 35.0% |
| TGATCATAACCTCATCAAGA+AGG | + | chr6_1:49713656-49713675 | Msa0887600:CDS | 35.0% | |
| ATCGTACAGACTTAAACCAT+AGG | - | chr6_1:49713727-49713746 | None:intergenic | 35.0% | |
| ! | ATATGATCCGAGTTTGAGAT+TGG | + | chr6_1:49713873-49713892 | Msa0887600:CDS | 35.0% |
| GGAATGGTATAATGAGCATA+TGG | + | chr6_1:49713923-49713942 | Msa0887600:CDS | 35.0% | |
| ATCACTATTAGCTGAATGCT+TGG | - | chr6_1:49714414-49714433 | None:intergenic | 35.0% | |
| ! | TTCTGACCCAAGTATTTTCA+AGG | + | chr6_1:49714547-49714566 | Msa0887600:CDS | 35.0% |
| !! | ATGAAGTTATTTTGTGTGGC+AGG | + | chr6_1:49714633-49714652 | Msa0887600:intron | 35.0% |
| TAGCGAAATATAATGCGTCT+TGG | - | chr6_1:49714672-49714691 | None:intergenic | 35.0% | |
| ! | TGTCGTGCAATTTTATGCAA+AGG | + | chr6_1:49714756-49714775 | Msa0887600:CDS | 35.0% |
| TAGTGCTATCAAAACCAAGT+CGG | - | chr6_1:49714878-49714897 | None:intergenic | 35.0% | |
| TAGCACTACCACAAGAATTG+AGG | - | chr6_1:49711342-49711361 | None:intergenic | 40.0% | |
| GTGCTCATAACTACTCTTGA+TGG | + | chr6_1:49711385-49711404 | Msa0887600:CDS | 40.0% | |
| ! | CATTTGAGTGTGAAGTGTTC+AGG | - | chr6_1:49711540-49711559 | None:intergenic | 40.0% |
| CACTTCACACTCAAATGCAT+TGG | + | chr6_1:49711543-49711562 | Msa0887600:intron | 40.0% | |
| ! | TTATCAATATCGGTTGTCCC+GGG | + | chr6_1:49711579-49711598 | Msa0887600:CDS | 40.0% |
| !! | AAAACATCAAGGGCATCAAC+AGG | - | chr6_1:49711671-49711690 | None:intergenic | 40.0% |
| !! | TTTGCTATTCTCTCCGAGTA+AGG | + | chr6_1:49711793-49711812 | Msa0887600:intron | 40.0% |
| ! | GGCGTATTTAGTTCATCAAC+CGG | - | chr6_1:49711940-49711959 | None:intergenic | 40.0% |
| GAACTAAATACGCCATCTAG+GGG | + | chr6_1:49711946-49711965 | Msa0887600:CDS | 40.0% | |
| ! | TTGTACCTTTTTCCCCTAGA+TGG | - | chr6_1:49711961-49711980 | None:intergenic | 40.0% |
| GTCAGTCTGGATAATCCAAT+TGG | - | chr6_1:49711994-49712013 | None:intergenic | 40.0% | |
| !! | GTTGTTTCTATGTTTCCTGC+TGG | + | chr6_1:49712071-49712090 | Msa0887600:intron | 40.0% |
| TGCACATAGCAGGTAACTTA+TGG | + | chr6_1:49712136-49712155 | Msa0887600:CDS | 40.0% | |
| GAGAACCTAATAAGGATCAC+AGG | + | chr6_1:49712163-49712182 | Msa0887600:CDS | 40.0% | |
| ACTTGCCTGTGATCCTTATT+AGG | - | chr6_1:49712171-49712190 | None:intergenic | 40.0% | |
| ATCATTGTGGCAGACGAAAA+AGG | - | chr6_1:49712284-49712303 | None:intergenic | 40.0% | |
| TCATCTCTGTCTATGCTTGA+AGG | + | chr6_1:49712353-49712372 | Msa0887600:intron | 40.0% | |
| GATGAATTGAACACGTGAAC+TGG | + | chr6_1:49712633-49712652 | Msa0887600:intron | 40.0% | |
| !! | AGTGGACTGGTTGTTTGTTT+AGG | + | chr6_1:49712915-49712934 | Msa0887600:intron | 40.0% |
| GTTGTTTGGCATCTCTAAGT+TGG | + | chr6_1:49712970-49712989 | Msa0887600:CDS | 40.0% | |
| TGTTTGGCATCTCTAAGTTG+GGG | + | chr6_1:49712972-49712991 | Msa0887600:CDS | 40.0% | |
| AGGTTGAATGAGGTGGAAAT+GGG | - | chr6_1:49713275-49713294 | None:intergenic | 40.0% | |
| AAACGAGAAGAGGTTGAATG+AGG | - | chr6_1:49713285-49713304 | None:intergenic | 40.0% | |
| ! | TAGGTTGGAGCAGATGAATT+TGG | + | chr6_1:49713462-49713481 | Msa0887600:intron | 40.0% |
| AGGTTGGAGCAGATGAATTT+GGG | + | chr6_1:49713463-49713482 | Msa0887600:intron | 40.0% | |
| ATGTTGATACATCTGGCATG+CGG | + | chr6_1:49713517-49713536 | Msa0887600:CDS | 40.0% | |
| TCCTAGTGCTAATATGCTTC+TGG | + | chr6_1:49713620-49713639 | Msa0887600:CDS | 40.0% | |
| ! | TCCAGAAGCATATTAGCACT+AGG | - | chr6_1:49713624-49713643 | None:intergenic | 40.0% |
| AATGTGGCCATAAAGACCTA+TGG | + | chr6_1:49713708-49713727 | Msa0887600:intron | 40.0% | |
| CCAAACTCATGGAACCATAA+TGG | - | chr6_1:49713783-49713802 | None:intergenic | 40.0% | |
| CCATTATGGTTCCATGAGTT+TGG | + | chr6_1:49713780-49713799 | Msa0887600:CDS | 40.0% | |
| AGAGTCTTCAGCAATTCTCA+AGG | - | chr6_1:49713839-49713858 | None:intergenic | 40.0% | |
| CATAGTGCCAATCTCAAACT+CGG | - | chr6_1:49713883-49713902 | None:intergenic | 40.0% | |
| GAATCTAGCCCATGTCATAA+AGG | + | chr6_1:49713945-49713964 | Msa0887600:CDS | 40.0% | |
| AATTGTTACTAAAGGGTGGG+AGG | + | chr6_1:49714193-49714212 | Msa0887600:CDS | 40.0% | |
| ATTGTTACTAAAGGGTGGGA+GGG | + | chr6_1:49714194-49714213 | Msa0887600:CDS | 40.0% | |
| TTGCTCTTTACTCTCATGAG+TGG | + | chr6_1:49714288-49714307 | Msa0887600:intron | 40.0% | |
| CAGGTTGTAAAACTTGAGCA+AGG | + | chr6_1:49714375-49714394 | Msa0887600:intron | 40.0% | |
| ! | CTGGTGATGCATTTGTTAGT+GGG | + | chr6_1:49714507-49714526 | Msa0887600:CDS | 40.0% |
| ! | GCATCTTTTGTAGGTAATGC+AGG | - | chr6_1:49714736-49714755 | None:intergenic | 40.0% |
| ACAGCTCGCATAATCAAAAG+GGG | - | chr6_1:49714963-49714982 | None:intergenic | 40.0% | |
| GACAGCTCGCATAATCAAAA+GGG | - | chr6_1:49714964-49714983 | None:intergenic | 40.0% | |
| TGACAGCTCGCATAATCAAA+AGG | - | chr6_1:49714965-49714984 | None:intergenic | 40.0% | |
| GCCACAAGTTCCCTTGAAAT+CGG | + | chr6_1:49711138-49711157 | Msa0887600:CDS | 45.0% | |
| TCCGATTTCAAGGGAACTTG+TGG | - | chr6_1:49711142-49711161 | None:intergenic | 45.0% | |
| AATCTCTGGCGATGACTTGA+CGG | + | chr6_1:49711171-49711190 | Msa0887600:CDS | 45.0% | |
| !!! | TCCCATCACCTTTTGGAACT+CGG | + | chr6_1:49711199-49711218 | Msa0887600:CDS | 45.0% |
| AACCAATCCCGAGTTCCAAA+AGG | - | chr6_1:49711210-49711229 | None:intergenic | 45.0% | |
| AGCACTTGAGAAGTAAGGGT+AGG | - | chr6_1:49711370-49711389 | None:intergenic | 45.0% | |
| GAACCTACCTGCAATACGAA+GGG | - | chr6_1:49711412-49711431 | None:intergenic | 45.0% | |
| ! | TCACACTCAAATGCATTGGC+AGG | + | chr6_1:49711547-49711566 | Msa0887600:intron | 45.0% |
| CTGCAGTTGTTTATGACCGA+CGG | + | chr6_1:49711614-49711633 | Msa0887600:CDS | 45.0% | |
| !! | AGGCGCTGGAAAAACATCAA+GGG | - | chr6_1:49711681-49711700 | None:intergenic | 45.0% |
| !! | AAGGCGCTGGAAAAACATCA+AGG | - | chr6_1:49711682-49711701 | None:intergenic | 45.0% |
| ATACGCCATCTAGGGGAAAA+AGG | + | chr6_1:49711953-49711972 | Msa0887600:CDS | 45.0% | |
| ATCCAGACTGACACCAACAA+TGG | + | chr6_1:49712002-49712021 | Msa0887600:intron | 45.0% | |
| !! | TTCCATTGTTGGTGTCAGTC+TGG | - | chr6_1:49712007-49712026 | None:intergenic | 45.0% |
| !! | AGAGTTGATGATCCCGTTCA+CGG | + | chr6_1:49712102-49712121 | Msa0887600:CDS | 45.0% |
| TCATCACCAATTCCACGTGA+AGG | + | chr6_1:49712662-49712681 | Msa0887600:intron | 45.0% | |
| TGATGACCTTCACGTGGAAT+TGG | - | chr6_1:49712671-49712690 | None:intergenic | 45.0% | |
| ATTCCACGTGAAGGTCATCA+TGG | + | chr6_1:49712671-49712690 | Msa0887600:intron | 45.0% | |
| TTACTTCTCTGCAGTGCTAC+CGG | + | chr6_1:49712811-49712830 | Msa0887600:intron | 45.0% | |
| !! | TCTGATGGGCTCATAACAGA+AGG | + | chr6_1:49712879-49712898 | Msa0887600:intron | 45.0% |
| ! | GTTTGGCATCTCTAAGTTGG+GGG | + | chr6_1:49712973-49712992 | Msa0887600:CDS | 45.0% |
| ! | TTTGGCATCTCTAAGTTGGG+GGG | + | chr6_1:49712974-49712993 | Msa0887600:CDS | 45.0% |
| GAGGTTGAATGAGGTGGAAA+TGG | - | chr6_1:49713276-49713295 | None:intergenic | 45.0% | |
| AACCTAAAACACAGATGGCG+AGG | - | chr6_1:49713448-49713467 | None:intergenic | 45.0% | |
| !! | TCGCCATCTGTGTTTTAGGT+TGG | + | chr6_1:49713447-49713466 | Msa0887600:intron | 45.0% |
| GCTCCAACCTAAAACACAGA+TGG | - | chr6_1:49713453-49713472 | None:intergenic | 45.0% | |
| !! | TAAAGGGCACCTTCTTGATG+AGG | - | chr6_1:49713668-49713687 | None:intergenic | 45.0% |
| TGGCTCATCAACCAAACTCA+TGG | - | chr6_1:49713794-49713813 | None:intergenic | 45.0% | |
| ! | CGAGTTTGAGATTGGCACTA+TGG | + | chr6_1:49713881-49713900 | Msa0887600:CDS | 45.0% |
| GGGTCGTAGATATTACACCA+AGG | + | chr6_1:49714214-49714233 | Msa0887600:CDS | 45.0% | |
| !! | TCATGAGTGGACTGAAACGT+TGG | + | chr6_1:49714301-49714320 | Msa0887600:intron | 45.0% |
| GTTGAACCTGTTGACACAAC+TGG | + | chr6_1:49714482-49714501 | Msa0887600:CDS | 45.0% | |
| ! | GCTGGTGATGCATTTGTTAG+TGG | + | chr6_1:49714506-49714525 | Msa0887600:CDS | 45.0% |
| ! | TGCACGACAGCATCTTTTGT+AGG | - | chr6_1:49714745-49714764 | None:intergenic | 45.0% |
| AGTGATTTCACCTTCCGACT+TGG | + | chr6_1:49714861-49714880 | Msa0887600:three_prime_UTR | 45.0% | |
| GCTATCAAAACCAAGTCGGA+AGG | - | chr6_1:49714874-49714893 | None:intergenic | 45.0% | |
| AGTCCTGTACTGCAACATTC+AGG | + | chr6_1:49714906-49714925 | Msa0887600:three_prime_UTR | 45.0% | |
| TAGCCTGAATGTTGCAGTAC+AGG | - | chr6_1:49714912-49714931 | None:intergenic | 45.0% | |
| TGTGCTACAGAGATTCCGAC+TGG | - | chr6_1:49711055-49711074 | None:intergenic | 50.0% | |
| TTGTGGCTGAGGCTCAACTA+CGG | - | chr6_1:49711125-49711144 | None:intergenic | 50.0% | |
| TTCAAGGGAACTTGTGGCTG+AGG | - | chr6_1:49711136-49711155 | None:intergenic | 50.0% | |
| ! | TCGACGGGTTCCGATTTCAA+GGG | - | chr6_1:49711151-49711170 | None:intergenic | 50.0% |
| ! | TTCGACGGGTTCCGATTTCA+AGG | - | chr6_1:49711152-49711171 | None:intergenic | 50.0% |
| TCATCGCCAGAGATTTCGAC+GGG | - | chr6_1:49711166-49711185 | None:intergenic | 50.0% | |
| GTCATCGCCAGAGATTTCGA+CGG | - | chr6_1:49711167-49711186 | None:intergenic | 50.0% | |
| ! | GGACTTCTCCCATCACCTTT+TGG | + | chr6_1:49711192-49711211 | Msa0887600:CDS | 50.0% |
| CCCGAGTTCCAAAAGGTGAT+GGG | - | chr6_1:49711203-49711222 | None:intergenic | 50.0% | |
| !!! | CCCATCACCTTTTGGAACTC+GGG | + | chr6_1:49711200-49711219 | Msa0887600:CDS | 50.0% |
| TCCCGAGTTCCAAAAGGTGA+TGG | - | chr6_1:49711204-49711223 | None:intergenic | 50.0% | |
| !!! | CACCTTTTGGAACTCGGGAT+TGG | + | chr6_1:49711205-49711224 | Msa0887600:CDS | 50.0% |
| GCTGATTGTCTTCGCCAACT+TGG | + | chr6_1:49711247-49711266 | Msa0887600:CDS | 50.0% | |
| TGATGGTCCCTTCGTATTGC+AGG | + | chr6_1:49711402-49711421 | Msa0887600:CDS | 50.0% | |
| GGAACCTACCTGCAATACGA+AGG | - | chr6_1:49711413-49711432 | None:intergenic | 50.0% | |
| CGTCGGTCATAAACAACTGC+AGG | - | chr6_1:49711616-49711635 | None:intergenic | 50.0% | |
| ! | TTGGACTCTTTGAGCACCGT+CGG | - | chr6_1:49711633-49711652 | None:intergenic | 50.0% |
| ! | GATGTTTTTCCAGCGCCTTG+TGG | + | chr6_1:49711683-49711702 | Msa0887600:CDS | 50.0% |
| ! | TCCAGCGCCTTGTGGATTAA+AGG | + | chr6_1:49711691-49711710 | Msa0887600:CDS | 50.0% |
| ACCTTTAATCCACAAGGCGC+TGG | - | chr6_1:49711695-49711714 | None:intergenic | 50.0% | |
| CAACTCTACTTGAAGCCAGC+AGG | - | chr6_1:49712089-49712108 | None:intergenic | 50.0% | |
| !! | CTTGAAGGCGTTTGTTGCGA+AGG | + | chr6_1:49712368-49712387 | Msa0887600:intron | 50.0% |
| CAACCATGATGACCTTCACG+TGG | - | chr6_1:49712677-49712696 | None:intergenic | 50.0% | |
| CACGTGAAGGTCATCATGGT+TGG | + | chr6_1:49712675-49712694 | Msa0887600:intron | 50.0% | |
| GAAGGCTGCAACGAAACAAG+TGG | + | chr6_1:49712897-49712916 | Msa0887600:intron | 50.0% | |
| CTGCAACGAAACAAGTGGAC+TGG | + | chr6_1:49712902-49712921 | Msa0887600:intron | 50.0% | |
| AGAGATGCCAAACAACGCAC+TGG | - | chr6_1:49712966-49712985 | None:intergenic | 50.0% | |
| CGAGAAGAGGTTGAATGAGG+TGG | - | chr6_1:49713282-49713301 | None:intergenic | 50.0% | |
| ! | CTCCTCGCCATCTGTGTTTT+AGG | + | chr6_1:49713443-49713462 | Msa0887600:intron | 50.0% |
| !! | GGTTGATGAGCCATGCAAGT+TGG | + | chr6_1:49713801-49713820 | Msa0887600:CDS | 50.0% |
| GCAAGATGAGCCAACTTGCA+TGG | - | chr6_1:49713814-49713833 | None:intergenic | 50.0% | |
| TATACCATTCCGAGCAGCCT+CGG | - | chr6_1:49713914-49713933 | None:intergenic | 50.0% | |
| CACCAAGGTAAGCTTGCCAA+AGG | + | chr6_1:49714229-49714248 | Msa0887600:intron | 50.0% | |
| GACCTTTGGCAAGCTTACCT+TGG | - | chr6_1:49714234-49714253 | None:intergenic | 50.0% | |
| GTAAGCTTGCCAAAGGTCGT+AGG | + | chr6_1:49714236-49714255 | Msa0887600:intron | 50.0% | |
| GACACTCAACGACGAATAGC+AGG | + | chr6_1:49714356-49714375 | Msa0887600:intron | 50.0% | |
| ! | CTTGAGCAAGGTTTGCTTCG+AGG | + | chr6_1:49714387-49714406 | Msa0887600:intron | 50.0% |
| CAGTCGGAATCGGAACCAGT+CGG | + | chr6_1:49711037-49711056 | Msa0887600:CDS | 55.0% | |
| AGGCTGATCTACTACGGTGG+CGG | - | chr6_1:49711099-49711118 | None:intergenic | 55.0% | |
| CTGAGGCTGATCTACTACGG+TGG | - | chr6_1:49711102-49711121 | None:intergenic | 55.0% | |
| CGGCTGAGGCTGATCTACTA+CGG | - | chr6_1:49711105-49711124 | None:intergenic | 55.0% | |
| TCGGAACCCGTCGAAATCTC+TGG | + | chr6_1:49711157-49711176 | Msa0887600:CDS | 55.0% | |
| GGTCCCTTCGTATTGCAGGT+AGG | + | chr6_1:49711406-49711425 | Msa0887600:intron | 55.0% | |
| TCGGTTGTCCCGGGTTTCAA+AGG | + | chr6_1:49711588-49711607 | Msa0887600:CDS | 55.0% | |
| GACGGTGCTCAAAGAGTCCA+AGG | + | chr6_1:49711632-49711651 | Msa0887600:CDS | 55.0% | |
| CAGGCGCACACTCAAATCCT+TGG | - | chr6_1:49711652-49711671 | None:intergenic | 55.0% | |
| !! | GGGAGGATTAGTTGAGCAGC+CGG | + | chr6_1:49711918-49711937 | Msa0887600:CDS | 55.0% |
| !! | GTTGATGATCCCGTTCACGG+TGG | + | chr6_1:49712105-49712124 | Msa0887600:CDS | 55.0% |
| AACGTTGAGCCACCGTGAAC+GGG | - | chr6_1:49712117-49712136 | None:intergenic | 55.0% | |
| CAACGTTGAGCCACCGTGAA+CGG | - | chr6_1:49712118-49712137 | None:intergenic | 55.0% | |
| GGCTCAACGTTGCACATAGC+AGG | + | chr6_1:49712126-49712145 | Msa0887600:CDS | 55.0% | |
| CATGCCACCAGTGCGTTGTT+TGG | + | chr6_1:49712956-49712975 | Msa0887600:CDS | 55.0% | |
| GATGCCAAACAACGCACTGG+TGG | - | chr6_1:49712963-49712982 | None:intergenic | 55.0% | |
| CCAGCACCAGTTGTGTCAAC+AGG | - | chr6_1:49714491-49714510 | None:intergenic | 55.0% | |
| CCTGTTGACACAACTGGTGC+TGG | + | chr6_1:49714488-49714507 | Msa0887600:CDS | 55.0% | |
| ATGTGCCGCGATCACAGTGA+CGG | + | chr6_1:49714696-49714715 | Msa0887600:CDS | 55.0% | |
| TCTCTCCGTCACTGTGATCG+CGG | - | chr6_1:49714704-49714723 | None:intergenic | 55.0% | |
| ! | CGATCACAGTGACGGAGAGA+GGG | + | chr6_1:49714704-49714723 | Msa0887600:CDS | 55.0% |
| ! | GATCACAGTGACGGAGAGAG+GGG | + | chr6_1:49714705-49714724 | Msa0887600:CDS | 55.0% |
| ! | CTGATCTACTACGGTGGCGG+CGG | - | chr6_1:49711096-49711115 | None:intergenic | 60.0% |
| CTGAGGCTCAACTACGGCTG+AGG | - | chr6_1:49711119-49711138 | None:intergenic | 60.0% | |
| !! | TGCAGGCGCCTTTGAAACCC+GGG | - | chr6_1:49711599-49711618 | None:intergenic | 60.0% |
| !! | CTGCAGGCGCCTTTGAAACC+CGG | - | chr6_1:49711600-49711619 | None:intergenic | 60.0% |
| ! | GCGATCACAGTGACGGAGAG+AGG | + | chr6_1:49714703-49714722 | Msa0887600:CDS | 60.0% |
| ! | ATCTACTACGGTGGCGGCGG+CGG | - | chr6_1:49711093-49711112 | None:intergenic | 65.0% |
| GGCACTATGGCCATCAGCCG+AGG | + | chr6_1:49713894-49713913 | Msa0887600:CDS | 65.0% | |
| TTCCGAGCAGCCTCGGCTGA+TGG | - | chr6_1:49713907-49713926 | None:intergenic | 65.0% | |
| TCAGCCGAGGCTGCTCGGAA+TGG | + | chr6_1:49713907-49713926 | Msa0887600:CDS | 65.0% | |
| GGCCATCAGCCGAGGCTGCT+CGG | + | chr6_1:49713902-49713921 | Msa0887600:CDS | 70.0% | |
| ! | TACTACGGTGGCGGCGGCGG+CGG | - | chr6_1:49711090-49711109 | None:intergenic | 75.0% |
| !! | TACGGTGGCGGCGGCGGCGG+CGG | - | chr6_1:49711087-49711106 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 49711019 | 49715000 | 49711019 | ID=Msa0887600;Name=Msa0887600 |
| chr6_1 | mRNA | 49711019 | 49715000 | 49711019 | ID=Msa0887600-mRNA-1;Parent=Msa0887600;Name=Msa0887600-mRNA-1;_AED=0.15;_eAED=0.16;_QI=0|0.6|0.54|0.90|1|1|11|211|563 |
| chr6_1 | exon | 49711019 | 49711423 | 49711019 | ID=Msa0887600-mRNA-1:exon:10256;Parent=Msa0887600-mRNA-1 |
| chr6_1 | exon | 49711569 | 49711712 | 49711569 | ID=Msa0887600-mRNA-1:exon:10257;Parent=Msa0887600-mRNA-1 |
| chr6_1 | exon | 49711847 | 49711974 | 49711847 | ID=Msa0887600-mRNA-1:exon:10258;Parent=Msa0887600-mRNA-1 |
| chr6_1 | exon | 49712101 | 49712188 | 49712101 | ID=Msa0887600-mRNA-1:exon:10259;Parent=Msa0887600-mRNA-1 |
| chr6_1 | exon | 49712375 | 49712430 | 49712375 | ID=Msa0887600-mRNA-1:exon:10260;Parent=Msa0887600-mRNA-1 |
| chr6_1 | exon | 49712952 | 49713018 | 49712952 | ID=Msa0887600-mRNA-1:exon:10261;Parent=Msa0887600-mRNA-1 |
| chr6_1 | exon | 49713465 | 49713677 | 49713465 | ID=Msa0887600-mRNA-1:exon:10262;Parent=Msa0887600-mRNA-1 |
| chr6_1 | exon | 49713769 | 49713966 | 49713769 | ID=Msa0887600-mRNA-1:exon:10263;Parent=Msa0887600-mRNA-1 |
| chr6_1 | exon | 49714095 | 49714235 | 49714095 | ID=Msa0887600-mRNA-1:exon:10264;Parent=Msa0887600-mRNA-1 |
| chr6_1 | exon | 49714452 | 49714568 | 49714452 | ID=Msa0887600-mRNA-1:exon:10265;Parent=Msa0887600-mRNA-1 |
| chr6_1 | exon | 49714655 | 49715000 | 49714655 | ID=Msa0887600-mRNA-1:exon:10266;Parent=Msa0887600-mRNA-1 |
| chr6_1 | CDS | 49711019 | 49711423 | 49711019 | ID=Msa0887600-mRNA-1:cds;Parent=Msa0887600-mRNA-1 |
| chr6_1 | CDS | 49711569 | 49711712 | 49711569 | ID=Msa0887600-mRNA-1:cds;Parent=Msa0887600-mRNA-1 |
| chr6_1 | CDS | 49711847 | 49711974 | 49711847 | ID=Msa0887600-mRNA-1:cds;Parent=Msa0887600-mRNA-1 |
| chr6_1 | CDS | 49712101 | 49712188 | 49712101 | ID=Msa0887600-mRNA-1:cds;Parent=Msa0887600-mRNA-1 |
| chr6_1 | CDS | 49712375 | 49712430 | 49712375 | ID=Msa0887600-mRNA-1:cds;Parent=Msa0887600-mRNA-1 |
| chr6_1 | CDS | 49712952 | 49713018 | 49712952 | ID=Msa0887600-mRNA-1:cds;Parent=Msa0887600-mRNA-1 |
| chr6_1 | CDS | 49713465 | 49713677 | 49713465 | ID=Msa0887600-mRNA-1:cds;Parent=Msa0887600-mRNA-1 |
| chr6_1 | CDS | 49713769 | 49713966 | 49713769 | ID=Msa0887600-mRNA-1:cds;Parent=Msa0887600-mRNA-1 |
| chr6_1 | CDS | 49714095 | 49714235 | 49714095 | ID=Msa0887600-mRNA-1:cds;Parent=Msa0887600-mRNA-1 |
| chr6_1 | CDS | 49714452 | 49714568 | 49714452 | ID=Msa0887600-mRNA-1:cds;Parent=Msa0887600-mRNA-1 |
| chr6_1 | CDS | 49714655 | 49714789 | 49714655 | ID=Msa0887600-mRNA-1:cds;Parent=Msa0887600-mRNA-1 |
| chr6_1 | three_prime_UTR | 49714790 | 49715000 | 49714790 | ID=Msa0887600-mRNA-1:three_prime_utr;Parent=Msa0887600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
