Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988690 | XP_003592350.1 | 66.962 | 339 | 61 | 6 | 220 | 510 | 5 | 340 | 2.24e-138 | 413 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988690 | sp|Q9FLH8|SCRK7_ARATH | 58.958 | 307 | 82 | 2 | 242 | 504 | 28 | 334 | 3.81e-113 | 341 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988690 | A0A072VKK1 | 49.648 | 568 | 190 | 14 | 25 | 506 | 3 | 560 | 1.55e-144 | 436 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0719080 | Msa0988690 | 0.821215 | 4.544118e-53 | -8.615850e-47 |
| Msa0719090 | Msa0988690 | 0.823003 | 1.750429e-53 | -8.615850e-47 |
| Msa0719390 | Msa0988690 | 0.812457 | 4.198944e-51 | -8.615850e-47 |
| Msa0789640 | Msa0988690 | 0.810986 | 8.775372e-51 | -8.615850e-47 |
| Msa0213670 | Msa0988690 | 0.858603 | 7.354239e-63 | -8.615850e-47 |
| Msa0988690 | Msa1305900 | 0.814164 | 1.770742e-51 | -8.615850e-47 |
| Msa0988690 | Msa1338620 | 0.809510 | 1.825617e-50 | -8.615850e-47 |
| Msa0500520 | Msa0988690 | 0.817117 | 3.893812e-52 | -8.615850e-47 |
| Msa0887600 | Msa0988690 | 0.910217 | 2.398262e-82 | -8.615850e-47 |
| Msa0913860 | Msa0988690 | 0.888496 | 5.605735e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988690 | MtrunA17_Chr1g0204101 | 66.962 | 339 | 61 | 6 | 220 | 510 | 5 | 340 | 2.06e-142 | 413 |
| Msa0988690 | MtrunA17_Chr1g0177771 | 48.415 | 568 | 189 | 15 | 25 | 506 | 3 | 552 | 2.88e-140 | 416 |
| Msa0988690 | MtrunA17_Chr6g0474331 | 64.557 | 316 | 68 | 2 | 242 | 513 | 33 | 348 | 7.98e-134 | 391 |
| Msa0988690 | MtrunA17_Chr1g0183241 | 50.943 | 424 | 125 | 8 | 151 | 510 | 2 | 406 | 1.77e-117 | 352 |
| Msa0988690 | MtrunA17_Chr5g0434971 | 56.311 | 309 | 90 | 3 | 242 | 506 | 72 | 379 | 1.42e-104 | 318 |
| Msa0988690 | MtrunA17_Chr1g0177321 | 44.737 | 494 | 146 | 12 | 115 | 506 | 1 | 469 | 1.81e-97 | 303 |
| Msa0988690 | MtrunA17_Chr1g0183661 | 59.574 | 282 | 76 | 4 | 244 | 493 | 1 | 276 | 1.90e-97 | 296 |
| Msa0988690 | MtrunA17_Chr1g0171921 | 56.818 | 308 | 90 | 4 | 242 | 506 | 188 | 495 | 4.74e-92 | 290 |
| Msa0988690 | MtrunA17_Chr1g0171921 | 44.643 | 112 | 41 | 3 | 25 | 116 | 3 | 113 | 9.26e-17 | 83.2 |
| Msa0988690 | MtrunA17_Chr1g0188291 | 46.815 | 314 | 121 | 4 | 242 | 511 | 13 | 324 | 8.61e-90 | 278 |
| Msa0988690 | MtrunA17_Chr4g0033631 | 46.154 | 325 | 129 | 3 | 231 | 511 | 9 | 331 | 1.01e-89 | 278 |
| Msa0988690 | MtrunA17_Chr2g0329451 | 46.106 | 321 | 127 | 3 | 231 | 507 | 8 | 326 | 7.24e-89 | 275 |
| Msa0988690 | MtrunA17_Chr1g0176221 | 54.884 | 215 | 73 | 5 | 309 | 507 | 1 | 207 | 8.46e-59 | 193 |
| Msa0988690 | MtrunA17_Chr7g0246421 | 46.316 | 190 | 63 | 1 | 356 | 506 | 2 | 191 | 1.40e-46 | 160 |
| Msa0988690 | MtrunA17_Chr8g0386161 | 45.622 | 217 | 75 | 6 | 64 | 239 | 76 | 290 | 4.32e-44 | 166 |
| Msa0988690 | MtrunA17_Chr4g0020911 | 70.940 | 117 | 34 | 0 | 356 | 472 | 56 | 172 | 6.02e-44 | 154 |
| Msa0988690 | MtrunA17_Chr7g0246411 | 53.279 | 122 | 50 | 2 | 242 | 356 | 46 | 167 | 2.07e-32 | 122 |
| Msa0988690 | MtrunA17_Chr5g0419371 | 28.936 | 235 | 147 | 3 | 261 | 477 | 253 | 485 | 4.02e-26 | 112 |
| Msa0988690 | MtrunA17_Chr4g0008441 | 31.053 | 190 | 125 | 3 | 245 | 433 | 125 | 309 | 1.23e-20 | 94.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988690 | AT5G51830.2 | 58.958 | 307 | 82 | 2 | 242 | 504 | 28 | 334 | 3.87e-114 | 341 |
| Msa0988690 | AT5G51830.1 | 58.958 | 307 | 82 | 2 | 242 | 504 | 28 | 334 | 3.87e-114 | 341 |
| Msa0988690 | AT1G66430.1 | 54.114 | 316 | 100 | 3 | 242 | 513 | 70 | 384 | 3.65e-106 | 322 |
| Msa0988690 | AT4G10260.1 | 49.835 | 303 | 106 | 4 | 242 | 500 | 11 | 311 | 2.65e-93 | 287 |
| Msa0988690 | AT3G59480.1 | 47.231 | 307 | 116 | 4 | 242 | 504 | 15 | 319 | 1.24e-87 | 273 |
| Msa0988690 | AT1G06030.1 | 46.129 | 310 | 121 | 3 | 242 | 507 | 16 | 323 | 2.62e-86 | 269 |
| Msa0988690 | AT2G31390.1 | 46.645 | 313 | 121 | 3 | 242 | 510 | 14 | 324 | 6.48e-86 | 268 |
| Msa0988690 | AT1G06020.1 | 44.839 | 310 | 125 | 3 | 242 | 507 | 15 | 322 | 4.29e-83 | 261 |
| Msa0988690 | AT5G63540.2 | 42.130 | 216 | 100 | 6 | 34 | 229 | 77 | 287 | 1.18e-35 | 141 |
| Msa0988690 | AT5G63540.1 | 41.981 | 212 | 98 | 6 | 34 | 225 | 77 | 283 | 3.37e-35 | 140 |
| Msa0988690 | AT1G69200.1 | 29.536 | 237 | 126 | 4 | 261 | 470 | 249 | 471 | 7.02e-25 | 108 |
| Msa0988690 | AT3G54090.1 | 29.362 | 235 | 137 | 4 | 261 | 468 | 146 | 378 | 2.04e-22 | 100 |
| Msa0988690 | AT1G50390.1 | 35.099 | 151 | 72 | 5 | 377 | 510 | 1 | 142 | 2.56e-16 | 76.6 |
Find 140 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATATTAGCACTAGGATTT+TGG | 0.158504 | 6_4:-43000438 | None:intergenic |
| CAACTTGGAGATTCGTTAAA+TGG | 0.186789 | 6_4:+42998033 | Msa0988690:CDS |
| TAGCCTGAATGTTGCATTAC+AGG | 0.215230 | 6_4:-43001853 | None:intergenic |
| TAGGTTGGAGCAGATGAATT+TGG | 0.243598 | 6_4:+43000286 | Msa0988690:intron |
| TACGGTGGCGGCGGCGGCGG+CGG | 0.260934 | 6_4:-42997855 | None:intergenic |
| CCTGAAAATATTAGAGTATT+GGG | 0.274657 | 6_4:+42998653 | Msa0988690:CDS |
| GGACTTCTCCCATCACCTTT+TGG | 0.283004 | 6_4:+42997963 | Msa0988690:CDS |
| TGAACTAAATACGCCATCTA+AGG | 0.289392 | 6_4:+42998703 | Msa0988690:CDS |
| CAGGCTAAAATATTCCATTA+TGG | 0.292003 | 6_4:+43000590 | Msa0988690:intron |
| TCCTAGTGCTAATATGCTTC+TGG | 0.296089 | 6_4:+43000444 | Msa0988690:CDS |
| CCATTATGGTTCCATGAGTT+TGG | 0.297448 | 6_4:+43000604 | Msa0988690:CDS |
| TGTTTAGGTGAAATGTTAAT+AGG | 0.301263 | 6_4:+42999678 | Msa0988690:intron |
| ATGCCAACTGCCACGTTTGC+AGG | 0.308650 | 6_4:-42999756 | None:intergenic |
| AGGTTGGAGCAGATGAATTT+GGG | 0.318393 | 6_4:+43000287 | Msa0988690:intron |
| ATACGCCATCTAAGGGAAAA+AGG | 0.326637 | 6_4:+42998711 | Msa0988690:CDS |
| TCCAGCGCCTTGTGGATTAA+AGG | 0.327589 | 6_4:+42998462 | Msa0988690:CDS |
| TGATGGTCCCTTCGTATTGC+AGG | 0.331157 | 6_4:+42998173 | Msa0988690:CDS |
| AACAAAAGCCGATTTGGTTC+TGG | 0.352069 | 6_4:-43000377 | None:intergenic |
| CAAAATAATGTTGATACATC+TGG | 0.377336 | 6_4:+43000334 | Msa0988690:CDS |
| TACTACGGTGGCGGCGGCGG+CGG | 0.378056 | 6_4:-42997858 | None:intergenic |
| AAGTGTAACAAAAGCCGATT+TGG | 0.378760 | 6_4:-43000383 | None:intergenic |
| CGAGTTTGAGATTGGCACTA+TGG | 0.381322 | 6_4:+43000705 | Msa0988690:CDS |
| AAGCTTCTAATTGTTACTAA+AGG | 0.390317 | 6_4:+43001006 | Msa0988690:CDS |
| CCAAACTCATGGAACCATAA+TGG | 0.394145 | 6_4:-43000604 | None:intergenic |
| GCAGTTGGCATCTCTAAGTT+GGG | 0.396668 | 6_4:+42999768 | Msa0988690:CDS |
| GTCGATGAAATTATCAATAT+CGG | 0.400463 | 6_4:+42998340 | Msa0988690:CDS |
| GGCCATCGGCCGAGGCTGCT+CGG | 0.402666 | 6_4:+43000726 | Msa0988690:CDS |
| AGCTTCTAATTGTTACTAAA+GGG | 0.405353 | 6_4:+43001007 | Msa0988690:CDS |
| GGCACTATGGCCATCGGCCG+AGG | 0.407247 | 6_4:+43000718 | Msa0988690:CDS |
| TCCGATTTCAAGGGAATTTG+TGG | 0.413687 | 6_4:-42997910 | None:intergenic |
| TCGGAACCCGTCGAAATCTC+TGG | 0.422235 | 6_4:+42997928 | Msa0988690:CDS |
| TTCTATTGCCAGAACCAAAT+CGG | 0.422298 | 6_4:+43000369 | Msa0988690:CDS |
| GTGCTCATAACTACTCTTGA+TGG | 0.423814 | 6_4:+42998156 | Msa0988690:CDS |
| AATCTCTGGCGATGACTTGA+CGG | 0.425637 | 6_4:+42997942 | Msa0988690:CDS |
| GGCAGTTGGCATCTCTAAGT+TGG | 0.428328 | 6_4:+42999767 | Msa0988690:CDS |
| GCCACAAATTCCCTTGAAAT+CGG | 0.428491 | 6_4:+42997909 | Msa0988690:CDS |
| ATATGATCCGAGTTTGAGAT+TGG | 0.429480 | 6_4:+43000697 | Msa0988690:CDS |
| ATCTACTACGGTGGCGGCGG+CGG | 0.432026 | 6_4:-42997861 | None:intergenic |
| AACGTTGAGCCACCGTGAAC+GGG | 0.435842 | 6_4:-42998872 | None:intergenic |
| GAATCTAGCCCATGTCATAA+AGG | 0.438471 | 6_4:+43000769 | Msa0988690:CDS |
| AGTCCTGTAATGCAACATTC+AGG | 0.440591 | 6_4:+43001850 | Msa0988690:three_prime_UTR |
| AAAACATCAAGGGCATCAAC+AGG | 0.443236 | 6_4:-42998439 | None:intergenic |
| GGCGTATTTAGTTCATCAAC+CGG | 0.448030 | 6_4:-42998695 | None:intergenic |
| TTCGACGGGTTCCGATTTCA+AGG | 0.451889 | 6_4:-42997920 | None:intergenic |
| TCCTGAAAATATTAGAGTAT+TGG | 0.455099 | 6_4:+42998652 | Msa0988690:CDS |
| AGCACCACCAGGAGACGCTT+TGG | 0.458404 | 6_4:-42999733 | None:intergenic |
| ACCTTTAATCCACAAGGCGC+TGG | 0.469198 | 6_4:-42998463 | None:intergenic |
| TTCAAGGGAATTTGTGGCTG+AGG | 0.469548 | 6_4:-42997904 | None:intergenic |
| TTATGAGCACTTGAGAAGTA+AGG | 0.469831 | 6_4:-42998143 | None:intergenic |
| ATTATCAATATCGGTTGTCC+CGG | 0.471772 | 6_4:+42998349 | Msa0988690:CDS |
| CAGGCGCACACTCAAATCCT+TGG | 0.474469 | 6_4:-42998420 | None:intergenic |
| GATTGGTTTGAAGAGAGATA+AGG | 0.476714 | 6_4:+42997993 | Msa0988690:CDS |
| CTGCAGGCGCCTTTGAAACC+CGG | 0.483022 | 6_4:-42998368 | None:intergenic |
| GTGACAGCTCCATAATCAAA+AGG | 0.486554 | 6_4:-43001906 | None:intergenic |
| AAGTGTAAAACAGTCGGAAT+CGG | 0.487194 | 6_4:+42997798 | Msa0988690:CDS |
| CAACGTTGAGCCACCGTGAA+CGG | 0.492640 | 6_4:-42998873 | None:intergenic |
| TTACACTTAGAGATGATGAA+TGG | 0.496161 | 6_4:+43000398 | Msa0988690:CDS |
| CTGAGGCTCAACTACGGCTG+AGG | 0.496800 | 6_4:-42997887 | None:intergenic |
| TGACAGCTCCATAATCAAAA+GGG | 0.497570 | 6_4:-43001905 | None:intergenic |
| GGAATGGTATAATGAGCATA+TGG | 0.500805 | 6_4:+43000747 | Msa0988690:CDS |
| CAGTTGGCATCTCTAAGTTG+GGG | 0.501143 | 6_4:+42999769 | Msa0988690:CDS |
| GGCTCAACGTTGCACATAGC+AGG | 0.504330 | 6_4:+42998884 | Msa0988690:CDS |
| TATAGAACAAAATAACACTT+TGG | 0.512451 | 6_4:-43001743 | None:intergenic |
| TTCTAATTGTTACTAAAGGG+TGG | 0.516676 | 6_4:+43001010 | Msa0988690:CDS |
| TAGCGAAATATAACGCGTCT+TGG | 0.517052 | 6_4:-43001613 | None:intergenic |
| AAAATTTACCTTTATGACAT+GGG | 0.517576 | 6_4:-43000777 | None:intergenic |
| AACAAATAAATATGTTGACT+TGG | 0.518930 | 6_4:+43001877 | Msa0988690:three_prime_UTR |
| TTCCGAGCAGCCTCGGCCGA+TGG | 0.523399 | 6_4:-43000728 | None:intergenic |
| ACTCTAGCCAAAGCGTCTCC+TGG | 0.524360 | 6_4:+42999726 | Msa0988690:CDS |
| GCAAGATGAGCCAACTTGCA+TGG | 0.531183 | 6_4:-43000635 | None:intergenic |
| TCGGTTGTCCCGGGTTTCAA+AGG | 0.531274 | 6_4:+42998359 | Msa0988690:CDS |
| AGTGATTTCACCTTCCGACT+TGG | 0.531440 | 6_4:+43001805 | Msa0988690:three_prime_UTR |
| TCCCGAGTTCCAAAAGGTGA+TGG | 0.533600 | 6_4:-42997972 | None:intergenic |
| AGAGTTGATGATCCCGTTCA+CGG | 0.537537 | 6_4:+42998860 | Msa0988690:CDS |
| TTCATCTGCATTTATAAGCA+AGG | 0.542858 | 6_4:+42999794 | Msa0988690:CDS |
| GCTGATTGTCTTCGCCAACT+TGG | 0.543091 | 6_4:+42998018 | Msa0988690:CDS |
| CGTCGGTCATAAACAACTGC+AGG | 0.548342 | 6_4:-42998384 | None:intergenic |
| TGGCTCATCAACCAAACTCA+TGG | 0.548985 | 6_4:-43000615 | None:intergenic |
| CATTTAACGAATCTCCAAGT+TGG | 0.549382 | 6_4:-42998032 | None:intergenic |
| TAAAATTTACCTTTATGACA+TGG | 0.549438 | 6_4:-43000778 | None:intergenic |
| AACCAATCCCGAGTTCCAAA+AGG | 0.549448 | 6_4:-42997978 | None:intergenic |
| TAAAGGGCACCTTCTTGATG+AGG | 0.550549 | 6_4:-43000489 | None:intergenic |
| GAGATTGGCACTATGGCCAT+CGG | 0.551211 | 6_4:+43000712 | Msa0988690:CDS |
| TCGGCCGAGGCTGCTCGGAA+TGG | 0.552120 | 6_4:+43000731 | Msa0988690:CDS |
| TTGGACTCTTTGAGCACCGT+CGG | 0.552345 | 6_4:-42998401 | None:intergenic |
| TATGAGCACTTGAGAAGTAA+GGG | 0.552655 | 6_4:-42998142 | None:intergenic |
| AGTTGGCATCTCTAAGTTGG+GGG | 0.556296 | 6_4:+42999770 | Msa0988690:CDS |
| GGGAGGATTAGTTGAGCAGC+CGG | 0.558205 | 6_4:+42998676 | Msa0988690:CDS |
| TCATCGCCAGAGATTTCGAC+GGG | 0.559201 | 6_4:-42997934 | None:intergenic |
| TGCAGGCGCCTTTGAAACCC+GGG | 0.560661 | 6_4:-42998367 | None:intergenic |
| TTATCAATATCGGTTGTCCC+GGG | 0.560699 | 6_4:+42998350 | Msa0988690:CDS |
| CATAGTGCCAATCTCAAACT+CGG | 0.562066 | 6_4:-43000704 | None:intergenic |
| GAACTAAATACGCCATCTAA+GGG | 0.564152 | 6_4:+42998704 | Msa0988690:CDS |
| CTGCAGTTGTTTATGACCGA+CGG | 0.566787 | 6_4:+42998385 | Msa0988690:CDS |
| TCTAATTGTTACTAAAGGGT+GGG | 0.567673 | 6_4:+43001011 | Msa0988690:CDS |
| CTGAAAATATTAGAGTATTG+GGG | 0.569341 | 6_4:+42998654 | Msa0988690:CDS |
| TAGCACTACCACAAGAATTG+AGG | 0.570518 | 6_4:-42998110 | None:intergenic |
| CTGATCTACTACGGTGGCGG+CGG | 0.570680 | 6_4:-42997864 | None:intergenic |
| GCGATCACAGTGACGGAGAG+AGG | 0.576921 | 6_4:+43001647 | Msa0988690:CDS |
| CCCGAGTTCCAAAAGGTGAT+GGG | 0.578397 | 6_4:-42997971 | None:intergenic |
| CGATCACAGTGACGGAGAGA+GGG | 0.581432 | 6_4:+43001648 | Msa0988690:CDS |
| TGGTGGTGCTCCTGCAAACG+TGG | 0.587504 | 6_4:+42999746 | Msa0988690:CDS |
| TATACCATTCCGAGCAGCCT+CGG | 0.589470 | 6_4:-43000735 | None:intergenic |
| AATTGTTACTAAAGGGTGGG+AGG | 0.590466 | 6_4:+43001014 | Msa0988690:CDS |
| CGGCTGAGGCTGATCTACTA+CGG | 0.594384 | 6_4:-42997873 | None:intergenic |
| ACGTTTGCAGGAGCACCACC+AGG | 0.595374 | 6_4:-42999744 | None:intergenic |
| TGATCATAACCTCATCAAGA+AGG | 0.598780 | 6_4:+43000480 | Msa0988690:CDS |
| AGATGAATTTGGGTATATGT+TGG | 0.599101 | 6_4:+43000297 | Msa0988690:CDS |
| GACGGTGCTCAAAGAGTCCA+AGG | 0.599720 | 6_4:+42998403 | Msa0988690:CDS |
| GCTCCTGCAAACGTGGCAGT+TGG | 0.602300 | 6_4:+42999753 | Msa0988690:CDS |
| TCGACGGGTTCCGATTTCAA+GGG | 0.602365 | 6_4:-42997919 | None:intergenic |
| TGAAAATATTAGAGTATTGG+GGG | 0.604031 | 6_4:+42998655 | Msa0988690:CDS |
| TTGTGGCTGAGGCTCAACTA+CGG | 0.609540 | 6_4:-42997893 | None:intergenic |
| GGTTGATGAGCCATGCAAGT+TGG | 0.610523 | 6_4:+43000625 | Msa0988690:CDS |
| TCCAGAAGCATATTAGCACT+AGG | 0.613601 | 6_4:-43000445 | None:intergenic |
| GTTGGCATCTCTAAGTTGGG+GGG | 0.621474 | 6_4:+42999771 | Msa0988690:CDS |
| GCTAGAGTCAAACAACGCAC+TGG | 0.628692 | 6_4:-42999711 | None:intergenic |
| TGTGCTACAGAGATTCCGAC+TGG | 0.629797 | 6_4:-42997823 | None:intergenic |
| GGAACCTACCTGCAATACGA+AGG | 0.636337 | 6_4:-42998181 | None:intergenic |
| GCTATCAAAACCAAGTCGGA+AGG | 0.637115 | 6_4:-43001815 | None:intergenic |
| ATTGTTACTAAAGGGTGGGA+GGG | 0.642680 | 6_4:+43001015 | Msa0988690:CDS |
| GAGTGCTATCAAAACCAAGT+CGG | 0.644703 | 6_4:-43001819 | None:intergenic |
| GATCACAGTGACGGAGAGAG+GGG | 0.644841 | 6_4:+43001649 | Msa0988690:CDS |
| GAACCTACCTGCAATACGAA+GGG | 0.645182 | 6_4:-42998180 | None:intergenic |
| AGAGTCAAACAACGCACTGG+TGG | 0.645190 | 6_4:-42999708 | None:intergenic |
| AGGCTGATCTACTACGGTGG+CGG | 0.646453 | 6_4:-42997867 | None:intergenic |
| GTCATCGCCAGAGATTTCGA+CGG | 0.647583 | 6_4:-42997935 | None:intergenic |
| CTGAGGCTGATCTACTACGG+TGG | 0.650238 | 6_4:-42997870 | None:intergenic |
| GACAGCTCCATAATCAAAAG+GGG | 0.659576 | 6_4:-43001904 | None:intergenic |
| TCTCTCCGTCACTGTGATCG+CGG | 0.666326 | 6_4:-43001645 | None:intergenic |
| CTAGCCAAAGCGTCTCCTGG+TGG | 0.670694 | 6_4:+42999729 | Msa0988690:CDS |
| CAGTCGGAATCGGAACCAGT+CGG | 0.671295 | 6_4:+42997808 | Msa0988690:CDS |
| AGCACTTGAGAAGTAAGGGT+AGG | 0.672625 | 6_4:-42998138 | None:intergenic |
| GAAAATATTAGAGTATTGGG+GGG | 0.673581 | 6_4:+42998656 | Msa0988690:CDS |
| ATGTTGATACATCTGGCATG+CGG | 0.677431 | 6_4:+43000341 | Msa0988690:CDS |
| ATGTGCCGCGATCACAGTGA+CGG | 0.677848 | 6_4:+43001640 | Msa0988690:CDS |
| GAAGAAACCTTTAATCCACA+AGG | 0.724250 | 6_4:-42998469 | None:intergenic |
| TTTAATGTAGAAGTGATACG+TGG | 0.741684 | 6_4:+42998614 | Msa0988690:CDS |
| GTTGATGATCCCGTTCACGG+TGG | 0.742555 | 6_4:+42998863 | Msa0988690:CDS |
| GGGTCGTAGATATTACACCA+AGG | 0.763883 | 6_4:+43001035 | Msa0988690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAATTAA+AGG | - | chr6_4:42999538-42999557 | None:intergenic | 0.0% |
| !!! | TTCAATTTTTATTTTTTTAC+CGG | - | chr6_4:42999581-42999600 | None:intergenic | 10.0% |
| !! | TTAATTTAACAATAAGAAAA+CGG | - | chr6_4:43000123-43000142 | None:intergenic | 10.0% |
| !! | AAAAGAAAATAATTAAATGA+GGG | - | chr6_4:43001117-43001136 | None:intergenic | 10.0% |
| !!! | ACATATATTACATTTTATAA+CGG | - | chr6_4:43001779-43001798 | None:intergenic | 10.0% |
| !! | AATACAATAAATTAACTGAA+TGG | - | chr6_4:42998205-42998224 | None:intergenic | 15.0% |
| !! | GTTAATTTATTGTATTCTTA+AGG | + | chr6_4:42998209-42998228 | Msa0988690:intron | 15.0% |
| !! | ATATATATATTCAGATGAAA+AGG | - | chr6_4:42998510-42998529 | None:intergenic | 15.0% |
| !!! | TATTTATTGACATTGTTATT+TGG | + | chr6_4:42999831-42999850 | Msa0988690:intron | 15.0% |
| !! | TAATTTAACAATAAGAAAAC+GGG | - | chr6_4:43000122-43000141 | None:intergenic | 15.0% |
| !! | AGTAAATACATAATATTTCT+AGG | - | chr6_4:43000165-43000184 | None:intergenic | 15.0% |
| !!! | ATATTTAAAAAGCTTTTTCA+AGG | + | chr6_4:43000976-43000995 | Msa0988690:CDS | 15.0% |
| !!! | TATTTAAAAAGCTTTTTCAA+GGG | + | chr6_4:43000977-43000996 | Msa0988690:CDS | 15.0% |
| !! | GAAAAGAAAATAATTAAATG+AGG | - | chr6_4:43001118-43001137 | None:intergenic | 15.0% |
| !! | TAATTGAATTTCCATCATAT+AGG | - | chr6_4:42998258-42998277 | None:intergenic | 20.0% |
| !! | TACAAATTAATCATTCCAAT+TGG | + | chr6_4:42998734-42998753 | Msa0988690:intron | 20.0% |
| !!! | TGGAAAACTTTTAGTTTAAT+AGG | + | chr6_4:42998780-42998799 | Msa0988690:intron | 20.0% |
| !!! | GGAAAACTTTTAGTTTAATA+GGG | + | chr6_4:42998781-42998800 | Msa0988690:intron | 20.0% |
| !!! | TAGGTTGATTTTAATTTTTC+AGG | + | chr6_4:42998968-42998987 | Msa0988690:intron | 20.0% |
| !! | AATCTAACTCATTCAATATT+AGG | - | chr6_4:42999185-42999204 | None:intergenic | 20.0% |
| !! | TGTAAAGTTGCAAAATAATT+TGG | + | chr6_4:42999241-42999260 | Msa0988690:intron | 20.0% |
| !!! | ACTGATTTGAGTTAAATTTT+TGG | - | chr6_4:42999272-42999291 | None:intergenic | 20.0% |
| !!! | TTTTGAATTCAACTATAACA+TGG | - | chr6_4:42999457-42999476 | None:intergenic | 20.0% |
| !!! | AACTTAATAATGATGTTTTG+TGG | + | chr6_4:42999492-42999511 | Msa0988690:intron | 20.0% |
| !! | TTAAGAAATCTGTTATATGT+TGG | + | chr6_4:42999908-42999927 | Msa0988690:intron | 20.0% |
| !! | TAAGAAATCTGTTATATGTT+GGG | + | chr6_4:42999909-42999928 | Msa0988690:intron | 20.0% |
| !! | AAATAGAAAATACGAGTAAA+AGG | - | chr6_4:43000067-43000086 | None:intergenic | 20.0% |
| !!! | TTCTGAATTTTAATCTATGT+TGG | + | chr6_4:43000224-43000243 | Msa0988690:intron | 20.0% |
| !!! | TTTAATTTTATACTGATTGC+AGG | + | chr6_4:43000571-43000590 | Msa0988690:intron | 20.0% |
| !! | AAAATTTACCTTTATGACAT+GGG | - | chr6_4:43000780-43000799 | None:intergenic | 20.0% |
| !! | TAAAATTTACCTTTATGACA+TGG | - | chr6_4:43000781-43000800 | None:intergenic | 20.0% |
| !!! | ATTACTTTTTTGATTGATGT+TGG | + | chr6_4:43000931-43000950 | Msa0988690:CDS | 20.0% |
| !! | TTAGAAAAAATTTCAGTGTT+TGG | + | chr6_4:43001551-43001570 | Msa0988690:intron | 20.0% |
| !! | TATAGAACAAAATAACACTT+TGG | - | chr6_4:43001746-43001765 | None:intergenic | 20.0% |
| !!! | AAAGTGTTATTTTGTTCTAT+AGG | + | chr6_4:43001745-43001764 | Msa0988690:three_prime_UTR | 20.0% |
| !!! | AACAAATAAATATGTTGACT+TGG | + | chr6_4:43001877-43001896 | Msa0988690:three_prime_UTR | 20.0% |
| ! | TAAATTATGCTCCTATATGA+TGG | + | chr6_4:42998244-42998263 | Msa0988690:intron | 25.0% |
| ! | GTCGATGAAATTATCAATAT+CGG | + | chr6_4:42998340-42998359 | Msa0988690:CDS | 25.0% |
| ! | TCCTGAAAATATTAGAGTAT+TGG | + | chr6_4:42998652-42998671 | Msa0988690:CDS | 25.0% |
| !! | CCTGAAAATATTAGAGTATT+GGG | + | chr6_4:42998653-42998672 | Msa0988690:CDS | 25.0% |
| !!! | CTGAAAATATTAGAGTATTG+GGG | + | chr6_4:42998654-42998673 | Msa0988690:CDS | 25.0% |
| !!! | TGAAAATATTAGAGTATTGG+GGG | + | chr6_4:42998655-42998674 | Msa0988690:CDS | 25.0% |
| !! | AACTAAAAGTTTTCCATTGT+TGG | - | chr6_4:42998776-42998795 | None:intergenic | 25.0% |
| ! | AAAAAAGTTTGCACCAAATT+AGG | - | chr6_4:42998809-42998828 | None:intergenic | 25.0% |
| ! | TGTTTAGGTGAAATGTTAAT+AGG | + | chr6_4:42999678-42999697 | Msa0988690:intron | 25.0% |
| !! | AGTTTTCAACAAATCAAACA+TGG | - | chr6_4:42999882-42999901 | None:intergenic | 25.0% |
| !! | GAATGTAACATTTTCATGTT+TGG | + | chr6_4:43000015-43000034 | Msa0988690:intron | 25.0% |
| ! | CAAAATAATGTTGATACATC+TGG | + | chr6_4:43000334-43000353 | Msa0988690:CDS | 25.0% |
| ! | AAGCTTCTAATTGTTACTAA+AGG | + | chr6_4:43001006-43001025 | Msa0988690:CDS | 25.0% |
| ! | AGCTTCTAATTGTTACTAAA+GGG | + | chr6_4:43001007-43001026 | Msa0988690:CDS | 25.0% |
| ! | AAATCTGAGTTAAATGACTT+TGG | - | chr6_4:43001069-43001088 | None:intergenic | 25.0% |
| !!! | CAGATTTTAATTGTCTGAAT+AGG | + | chr6_4:43001082-43001101 | Msa0988690:intron | 25.0% |
| !! | TGATTACTAAATTTTTGTGC+AGG | + | chr6_4:43001276-43001295 | Msa0988690:intron | 25.0% |
| !! | AATTTTTGTGCAGGATTTTA+AGG | + | chr6_4:43001285-43001304 | Msa0988690:intron | 25.0% |
| !! | ATTTTTGTGCAGGATTTTAA+GGG | + | chr6_4:43001286-43001305 | Msa0988690:intron | 25.0% |
| ! | GAATTACCTTGAAAATACTT+GGG | - | chr6_4:43001502-43001521 | None:intergenic | 25.0% |
| ! | TGAATTACCTTGAAAATACT+TGG | - | chr6_4:43001503-43001522 | None:intergenic | 25.0% |
| !!! | TAAACAGATTTCCGCTTTTT+TGG | - | chr6_4:42998070-42998089 | None:intergenic | 30.0% |
| TTTAATGTAGAAGTGATACG+TGG | + | chr6_4:42998614-42998633 | Msa0988690:CDS | 30.0% | |
| ! | CCCAATACTCTAATATTTTC+AGG | - | chr6_4:42998656-42998675 | None:intergenic | 30.0% |
| !! | GAAAATATTAGAGTATTGGG+GGG | + | chr6_4:42998656-42998675 | Msa0988690:CDS | 30.0% |
| GTTTAATAGGGAACCTAATT+TGG | + | chr6_4:42998793-42998812 | Msa0988690:intron | 30.0% | |
| ATGGAATAGAGAACCTAATA+AGG | + | chr6_4:42998913-42998932 | Msa0988690:intron | 30.0% | |
| ACCTATCTATTCTCTGTTTA+GGG | - | chr6_4:42998953-42998972 | None:intergenic | 30.0% | |
| AACCTATCTATTCTCTGTTT+AGG | - | chr6_4:42998954-42998973 | None:intergenic | 30.0% | |
| CATATTATATCAGTCAGTCA+TGG | + | chr6_4:42998996-42999015 | Msa0988690:intron | 30.0% | |
| ! | ATTTCAGAGTATCATCATTG+TGG | - | chr6_4:42999055-42999074 | None:intergenic | 30.0% |
| AAGAAGTCATATTCCAAGTA+TGG | + | chr6_4:42999133-42999152 | Msa0988690:intron | 30.0% | |
| !!! | TACTTTTTCTTGTCCATACT+TGG | - | chr6_4:42999149-42999168 | None:intergenic | 30.0% |
| TTCATCTGCATTTATAAGCA+AGG | + | chr6_4:42999794-42999813 | Msa0988690:CDS | 30.0% | |
| ! | ATTGATTACGCTTTTCTGAA+TGG | + | chr6_4:42999941-42999960 | Msa0988690:intron | 30.0% |
| AGATGAATTTGGGTATATGT+TGG | + | chr6_4:43000297-43000316 | Msa0988690:CDS | 30.0% | |
| TTACACTTAGAGATGATGAA+TGG | + | chr6_4:43000398-43000417 | Msa0988690:CDS | 30.0% | |
| AAACGGAGATGGAAATTAAA+GGG | - | chr6_4:43000508-43000527 | None:intergenic | 30.0% | |
| TAAACGGAGATGGAAATTAA+AGG | - | chr6_4:43000509-43000528 | None:intergenic | 30.0% | |
| ! | TTATGGCCACGTTTTATAAA+CGG | - | chr6_4:43000525-43000544 | None:intergenic | 30.0% |
| ACTTAAACCATAGGTCTTTA+TGG | - | chr6_4:43000542-43000561 | None:intergenic | 30.0% | |
| ATCATACAGACTTAAACCAT+AGG | - | chr6_4:43000551-43000570 | None:intergenic | 30.0% | |
| CAGGCTAAAATATTCCATTA+TGG | + | chr6_4:43000590-43000609 | Msa0988690:intron | 30.0% | |
| GAAAATAGAATGAAGTGCAA+TGG | - | chr6_4:43000852-43000871 | None:intergenic | 30.0% | |
| AATAACACTTCAGATAGACT+CGG | - | chr6_4:43000880-43000899 | None:intergenic | 30.0% | |
| TTCTAATTGTTACTAAAGGG+TGG | + | chr6_4:43001010-43001029 | Msa0988690:CDS | 30.0% | |
| TCTAATTGTTACTAAAGGGT+GGG | + | chr6_4:43001011-43001030 | Msa0988690:CDS | 30.0% | |
| ! | GGGAAAAAGTGTAAAACAGT+CGG | + | chr6_4:42997792-42997811 | Msa0988690:CDS | 35.0% |
| AAGTGTAAAACAGTCGGAAT+CGG | + | chr6_4:42997798-42997817 | Msa0988690:CDS | 35.0% | |
| !! | GATTGGTTTGAAGAGAGATA+AGG | + | chr6_4:42997993-42998012 | Msa0988690:CDS | 35.0% |
| CATTTAACGAATCTCCAAGT+TGG | - | chr6_4:42998035-42998054 | None:intergenic | 35.0% | |
| CAACTTGGAGATTCGTTAAA+TGG | + | chr6_4:42998033-42998052 | Msa0988690:CDS | 35.0% | |
| CTTTGATGTCTCCAAAAAAG+CGG | + | chr6_4:42998056-42998075 | Msa0988690:CDS | 35.0% | |
| ! | TTTTCTGACCTCAATTCTTG+TGG | + | chr6_4:42998102-42998121 | Msa0988690:CDS | 35.0% |
| TATGAGCACTTGAGAAGTAA+GGG | - | chr6_4:42998145-42998164 | None:intergenic | 35.0% | |
| TTATGAGCACTTGAGAAGTA+AGG | - | chr6_4:42998146-42998165 | None:intergenic | 35.0% | |
| ! | ATTATCAATATCGGTTGTCC+CGG | + | chr6_4:42998349-42998368 | Msa0988690:CDS | 35.0% |
| GAAGAAACCTTTAATCCACA+AGG | - | chr6_4:42998472-42998491 | None:intergenic | 35.0% | |
| CAGATGAAAAGGATGTATAG+TGG | - | chr6_4:42998499-42998518 | None:intergenic | 35.0% | |
| ! | TCCGAGTAAGGATTAATTTG+AGG | + | chr6_4:42998563-42998582 | Msa0988690:intron | 35.0% |
| CCCTCAAATTAATCCTTACT+CGG | - | chr6_4:42998567-42998586 | None:intergenic | 35.0% | |
| ! | CCGAGTAAGGATTAATTTGA+GGG | + | chr6_4:42998564-42998583 | Msa0988690:intron | 35.0% |
| TGAACTAAATACGCCATCTA+AGG | + | chr6_4:42998703-42998722 | Msa0988690:CDS | 35.0% | |
| GAACTAAATACGCCATCTAA+GGG | + | chr6_4:42998704-42998723 | Msa0988690:CDS | 35.0% | |
| ! | TTGTACCTTTTTCCCTTAGA+TGG | - | chr6_4:42998719-42998738 | None:intergenic | 35.0% |
| ACCCTAAACAGAGAATAGAT+AGG | + | chr6_4:42998949-42998968 | Msa0988690:intron | 35.0% | |
| ATATCAGTCAGTCATGGTTA+CGG | + | chr6_4:42999002-42999021 | Msa0988690:intron | 35.0% | |
| !!! | ACGAACAATTCTTGTTTTGC+AGG | + | chr6_4:42999600-42999619 | Msa0988690:intron | 35.0% |
| ! | TGTTTTGCAGGTAATTCTGA+TGG | + | chr6_4:42999612-42999631 | Msa0988690:intron | 35.0% |
| ! | GTTTTGCAGGTAATTCTGAT+GGG | + | chr6_4:42999613-42999632 | Msa0988690:intron | 35.0% |
| GGTTTCTTGTTACTATCTAC+AGG | + | chr6_4:42999852-42999871 | Msa0988690:intron | 35.0% | |
| AATGGTATGTGTGTGTTTCA+AGG | + | chr6_4:42999959-42999978 | Msa0988690:intron | 35.0% | |
| ! | GTTAAAGTTCGTGCATTTTG+AGG | + | chr6_4:43000037-43000056 | Msa0988690:intron | 35.0% |
| AACAATAAGAAAACGGGAAG+AGG | - | chr6_4:43000116-43000135 | None:intergenic | 35.0% | |
| TTCTATTGCCAGAACCAAAT+CGG | + | chr6_4:43000369-43000388 | Msa0988690:CDS | 35.0% | |
| AAGTGTAACAAAAGCCGATT+TGG | - | chr6_4:43000386-43000405 | None:intergenic | 35.0% | |
| ! | GCATATTAGCACTAGGATTT+TGG | - | chr6_4:43000441-43000460 | None:intergenic | 35.0% |
| TGATCATAACCTCATCAAGA+AGG | + | chr6_4:43000480-43000499 | Msa0988690:CDS | 35.0% | |
| ! | AGAGTTTTCAGCAATTCTCA+AGG | - | chr6_4:43000663-43000682 | None:intergenic | 35.0% |
| ! | ATATGATCCGAGTTTGAGAT+TGG | + | chr6_4:43000697-43000716 | Msa0988690:CDS | 35.0% |
| GGAATGGTATAATGAGCATA+TGG | + | chr6_4:43000747-43000766 | Msa0988690:CDS | 35.0% | |
| TTTCTCTTTACTCTCATGAG+TGG | + | chr6_4:43001134-43001153 | Msa0988690:intron | 35.0% | |
| ATCACTATTAGCTGAATGCT+TGG | - | chr6_4:43001260-43001279 | None:intergenic | 35.0% | |
| ! | TTCTGACCCAAGTATTTTCA+AGG | + | chr6_4:43001493-43001512 | Msa0988690:intron | 35.0% |
| !! | GAGTTGATGAAGTTATTGTG+TGG | + | chr6_4:43001573-43001592 | Msa0988690:intron | 35.0% |
| ! | TGTCGTGCAATTTTATGCAA+AGG | + | chr6_4:43001700-43001719 | Msa0988690:CDS | 35.0% |
| !! | TGGAATTCCCCTTTTGATTA+TGG | + | chr6_4:43001897-43001916 | Msa0988690:three_prime_UTR | 35.0% |
| TGACAGCTCCATAATCAAAA+GGG | - | chr6_4:43001908-43001927 | None:intergenic | 35.0% | |
| GCCACAAATTCCCTTGAAAT+CGG | + | chr6_4:42997909-42997928 | Msa0988690:CDS | 40.0% | |
| TCCGATTTCAAGGGAATTTG+TGG | - | chr6_4:42997913-42997932 | None:intergenic | 40.0% | |
| TAGCACTACCACAAGAATTG+AGG | - | chr6_4:42998113-42998132 | None:intergenic | 40.0% | |
| GTGCTCATAACTACTCTTGA+TGG | + | chr6_4:42998156-42998175 | Msa0988690:CDS | 40.0% | |
| ! | CATTTGAGTGTGAAGTGTTC+AGG | - | chr6_4:42998311-42998330 | None:intergenic | 40.0% |
| CACTTCACACTCAAATGCAT+TGG | + | chr6_4:42998314-42998333 | Msa0988690:intron | 40.0% | |
| ! | TTATCAATATCGGTTGTCCC+GGG | + | chr6_4:42998350-42998369 | Msa0988690:CDS | 40.0% |
| !! | AAAACATCAAGGGCATCAAC+AGG | - | chr6_4:42998442-42998461 | None:intergenic | 40.0% |
| !! | TTTGCTATTCTCTCCGAGTA+AGG | + | chr6_4:42998551-42998570 | Msa0988690:intron | 40.0% |
| !! | AATATTAGAGTATTGGGGGG+AGG | + | chr6_4:42998659-42998678 | Msa0988690:CDS | 40.0% |
| ! | GGCGTATTTAGTTCATCAAC+CGG | - | chr6_4:42998698-42998717 | None:intergenic | 40.0% |
| ATACGCCATCTAAGGGAAAA+AGG | + | chr6_4:42998711-42998730 | Msa0988690:CDS | 40.0% | |
| !! | GTTGTTTCTATGTTTCCTGC+TGG | + | chr6_4:42998829-42998848 | Msa0988690:intron | 40.0% |
| TGCACATAGCAGGTAACTTA+TGG | + | chr6_4:42998894-42998913 | Msa0988690:intron | 40.0% | |
| GAGAACCTAATAAGGATCAC+AGG | + | chr6_4:42998921-42998940 | Msa0988690:intron | 40.0% | |
| ACTTGCCTGTGATCCTTATT+AGG | - | chr6_4:42998929-42998948 | None:intergenic | 40.0% | |
| ATCATTGTGGCAGACGAAAA+AGG | - | chr6_4:42999042-42999061 | None:intergenic | 40.0% | |
| TCATCTCTGTCTATGCTTGA+AGG | + | chr6_4:42999088-42999107 | Msa0988690:intron | 40.0% | |
| GATGAATTGAACACGTGAAC+TGG | + | chr6_4:42999380-42999399 | Msa0988690:intron | 40.0% | |
| !! | AGTGGACTGGTTGTTTGTTT+AGG | + | chr6_4:42999663-42999682 | Msa0988690:intron | 40.0% |
| ATTCCAAAGCTCACGTTTCA+GGG | - | chr6_4:42999999-43000018 | None:intergenic | 40.0% | |
| AGGTTGAATGAGGTGGAAAT+GGG | - | chr6_4:43000096-43000115 | None:intergenic | 40.0% | |
| AACCTAAAAGACAGATGGTG+AGG | - | chr6_4:43000272-43000291 | None:intergenic | 40.0% | |
| !! | TCACCATCTGTCTTTTAGGT+TGG | + | chr6_4:43000271-43000290 | Msa0988690:intron | 40.0% |
| ! | TAGGTTGGAGCAGATGAATT+TGG | + | chr6_4:43000286-43000305 | Msa0988690:intron | 40.0% |
| AGGTTGGAGCAGATGAATTT+GGG | + | chr6_4:43000287-43000306 | Msa0988690:intron | 40.0% | |
| ATGTTGATACATCTGGCATG+CGG | + | chr6_4:43000341-43000360 | Msa0988690:CDS | 40.0% | |
| !! | AACAAAAGCCGATTTGGTTC+TGG | - | chr6_4:43000380-43000399 | None:intergenic | 40.0% |
| TCCTAGTGCTAATATGCTTC+TGG | + | chr6_4:43000444-43000463 | Msa0988690:CDS | 40.0% | |
| ! | TCCAGAAGCATATTAGCACT+AGG | - | chr6_4:43000448-43000467 | None:intergenic | 40.0% |
| ! | CCACGTTTTATAAACGGAGA+TGG | - | chr6_4:43000519-43000538 | None:intergenic | 40.0% |
| CCATCTCCGTTTATAAAACG+TGG | + | chr6_4:43000516-43000535 | Msa0988690:intron | 40.0% | |
| CCAAACTCATGGAACCATAA+TGG | - | chr6_4:43000607-43000626 | None:intergenic | 40.0% | |
| CCATTATGGTTCCATGAGTT+TGG | + | chr6_4:43000604-43000623 | Msa0988690:CDS | 40.0% | |
| CATAGTGCCAATCTCAAACT+CGG | - | chr6_4:43000707-43000726 | None:intergenic | 40.0% | |
| GAATCTAGCCCATGTCATAA+AGG | + | chr6_4:43000769-43000788 | Msa0988690:CDS | 40.0% | |
| AATTGTTACTAAAGGGTGGG+AGG | + | chr6_4:43001014-43001033 | Msa0988690:CDS | 40.0% | |
| ATTGTTACTAAAGGGTGGGA+GGG | + | chr6_4:43001015-43001034 | Msa0988690:CDS | 40.0% | |
| CAGGTTGTAAAACTTGAGCA+AGG | + | chr6_4:43001221-43001240 | Msa0988690:intron | 40.0% | |
| ! | CTGGTGATGCATTTGTTAGT+GGG | + | chr6_4:43001453-43001472 | Msa0988690:intron | 40.0% |
| TGATGAAGTTATTGTGTGGC+AGG | + | chr6_4:43001577-43001596 | Msa0988690:intron | 40.0% | |
| TAGCGAAATATAACGCGTCT+TGG | - | chr6_4:43001616-43001635 | None:intergenic | 40.0% | |
| ! | GCATCTTTTGTAGGTAATGC+AGG | - | chr6_4:43001680-43001699 | None:intergenic | 40.0% |
| GAGTGCTATCAAAACCAAGT+CGG | - | chr6_4:43001822-43001841 | None:intergenic | 40.0% | |
| AGTCCTGTAATGCAACATTC+AGG | + | chr6_4:43001850-43001869 | Msa0988690:three_prime_UTR | 40.0% | |
| TAGCCTGAATGTTGCATTAC+AGG | - | chr6_4:43001856-43001875 | None:intergenic | 40.0% | |
| GACAGCTCCATAATCAAAAG+GGG | - | chr6_4:43001907-43001926 | None:intergenic | 40.0% | |
| GTGACAGCTCCATAATCAAA+AGG | - | chr6_4:43001909-43001928 | None:intergenic | 40.0% | |
| TTCAAGGGAATTTGTGGCTG+AGG | - | chr6_4:42997907-42997926 | None:intergenic | 45.0% | |
| AATCTCTGGCGATGACTTGA+CGG | + | chr6_4:42997942-42997961 | Msa0988690:CDS | 45.0% | |
| !!! | TCCCATCACCTTTTGGAACT+CGG | + | chr6_4:42997970-42997989 | Msa0988690:CDS | 45.0% |
| AACCAATCCCGAGTTCCAAA+AGG | - | chr6_4:42997981-42998000 | None:intergenic | 45.0% | |
| AGCACTTGAGAAGTAAGGGT+AGG | - | chr6_4:42998141-42998160 | None:intergenic | 45.0% | |
| GAACCTACCTGCAATACGAA+GGG | - | chr6_4:42998183-42998202 | None:intergenic | 45.0% | |
| ! | TCACACTCAAATGCATTGGC+AGG | + | chr6_4:42998318-42998337 | Msa0988690:intron | 45.0% |
| CTGCAGTTGTTTATGACCGA+CGG | + | chr6_4:42998385-42998404 | Msa0988690:CDS | 45.0% | |
| !! | AGGCGCTGGAAAAACATCAA+GGG | - | chr6_4:42998452-42998471 | None:intergenic | 45.0% |
| !! | AAGGCGCTGGAAAAACATCA+AGG | - | chr6_4:42998453-42998472 | None:intergenic | 45.0% |
| GTCAGTCTGGATAGTCCAAT+TGG | - | chr6_4:42998752-42998771 | None:intergenic | 45.0% | |
| ATCCAGACTGACACCAACAA+TGG | + | chr6_4:42998760-42998779 | Msa0988690:intron | 45.0% | |
| !! | TTCCATTGTTGGTGTCAGTC+TGG | - | chr6_4:42998765-42998784 | None:intergenic | 45.0% |
| !! | AGAGTTGATGATCCCGTTCA+CGG | + | chr6_4:42998860-42998879 | Msa0988690:CDS | 45.0% |
| TCATCACCAATTCCACGTGA+AGG | + | chr6_4:42999409-42999428 | Msa0988690:intron | 45.0% | |
| TGATGACCTTCACGTGGAAT+TGG | - | chr6_4:42999418-42999437 | None:intergenic | 45.0% | |
| ATTCCACGTGAAGGTCATCA+TGG | + | chr6_4:42999418-42999437 | Msa0988690:intron | 45.0% | |
| TTACTTCTCTGCAGTGCTAC+CGG | + | chr6_4:42999559-42999578 | Msa0988690:intron | 45.0% | |
| !! | TCTGATGGGCTCATAACAGA+AGG | + | chr6_4:42999627-42999646 | Msa0988690:intron | 45.0% |
| GCAGTTGGCATCTCTAAGTT+GGG | + | chr6_4:42999768-42999787 | Msa0988690:CDS | 45.0% | |
| CAGTTGGCATCTCTAAGTTG+GGG | + | chr6_4:42999769-42999788 | Msa0988690:CDS | 45.0% | |
| ! | AGTTGGCATCTCTAAGTTGG+GGG | + | chr6_4:42999770-42999789 | Msa0988690:CDS | 45.0% |
| CATTCCAAAGCTCACGTTTC+AGG | - | chr6_4:43000000-43000019 | None:intergenic | 45.0% | |
| GAGGTTGAATGAGGTGGAAA+TGG | - | chr6_4:43000097-43000116 | None:intergenic | 45.0% | |
| AAACGGGAAGAGGTTGAATG+AGG | - | chr6_4:43000106-43000125 | None:intergenic | 45.0% | |
| ! | CTCCTCACCATCTGTCTTTT+AGG | + | chr6_4:43000267-43000286 | Msa0988690:intron | 45.0% |
| GCTCCAACCTAAAAGACAGA+TGG | - | chr6_4:43000277-43000296 | None:intergenic | 45.0% | |
| !! | TAAAGGGCACCTTCTTGATG+AGG | - | chr6_4:43000492-43000511 | None:intergenic | 45.0% |
| AACGTGGCCATAAAGACCTA+TGG | + | chr6_4:43000532-43000551 | Msa0988690:intron | 45.0% | |
| TGGCTCATCAACCAAACTCA+TGG | - | chr6_4:43000618-43000637 | None:intergenic | 45.0% | |
| ! | CGAGTTTGAGATTGGCACTA+TGG | + | chr6_4:43000705-43000724 | Msa0988690:CDS | 45.0% |
| GGGTCGTAGATATTACACCA+AGG | + | chr6_4:43001035-43001054 | Msa0988690:CDS | 45.0% | |
| TGACTTTGGCAAGCTTACCT+TGG | - | chr6_4:43001055-43001074 | None:intergenic | 45.0% | |
| !! | TCATGAGTGGACTGAAACGT+TGG | + | chr6_4:43001147-43001166 | Msa0988690:intron | 45.0% |
| GACACTCAACGATGAATAGC+AGG | + | chr6_4:43001202-43001221 | Msa0988690:intron | 45.0% | |
| GTTGAACCTGTTGACACAAC+TGG | + | chr6_4:43001428-43001447 | Msa0988690:intron | 45.0% | |
| ! | GCTGGTGATGCATTTGTTAG+TGG | + | chr6_4:43001452-43001471 | Msa0988690:intron | 45.0% |
| ! | TGCACGACAGCATCTTTTGT+AGG | - | chr6_4:43001689-43001708 | None:intergenic | 45.0% |
| AGTGATTTCACCTTCCGACT+TGG | + | chr6_4:43001805-43001824 | Msa0988690:three_prime_UTR | 45.0% | |
| GCTATCAAAACCAAGTCGGA+AGG | - | chr6_4:43001818-43001837 | None:intergenic | 45.0% | |
| TGTGCTACAGAGATTCCGAC+TGG | - | chr6_4:42997826-42997845 | None:intergenic | 50.0% | |
| TTGTGGCTGAGGCTCAACTA+CGG | - | chr6_4:42997896-42997915 | None:intergenic | 50.0% | |
| ! | TCGACGGGTTCCGATTTCAA+GGG | - | chr6_4:42997922-42997941 | None:intergenic | 50.0% |
| ! | TTCGACGGGTTCCGATTTCA+AGG | - | chr6_4:42997923-42997942 | None:intergenic | 50.0% |
| TCATCGCCAGAGATTTCGAC+GGG | - | chr6_4:42997937-42997956 | None:intergenic | 50.0% | |
| GTCATCGCCAGAGATTTCGA+CGG | - | chr6_4:42997938-42997957 | None:intergenic | 50.0% | |
| ! | GGACTTCTCCCATCACCTTT+TGG | + | chr6_4:42997963-42997982 | Msa0988690:CDS | 50.0% |
| CCCGAGTTCCAAAAGGTGAT+GGG | - | chr6_4:42997974-42997993 | None:intergenic | 50.0% | |
| !!! | CCCATCACCTTTTGGAACTC+GGG | + | chr6_4:42997971-42997990 | Msa0988690:CDS | 50.0% |
| TCCCGAGTTCCAAAAGGTGA+TGG | - | chr6_4:42997975-42997994 | None:intergenic | 50.0% | |
| !!! | CACCTTTTGGAACTCGGGAT+TGG | + | chr6_4:42997976-42997995 | Msa0988690:CDS | 50.0% |
| GCTGATTGTCTTCGCCAACT+TGG | + | chr6_4:42998018-42998037 | Msa0988690:CDS | 50.0% | |
| TGATGGTCCCTTCGTATTGC+AGG | + | chr6_4:42998173-42998192 | Msa0988690:CDS | 50.0% | |
| GGAACCTACCTGCAATACGA+AGG | - | chr6_4:42998184-42998203 | None:intergenic | 50.0% | |
| CGTCGGTCATAAACAACTGC+AGG | - | chr6_4:42998387-42998406 | None:intergenic | 50.0% | |
| ! | TTGGACTCTTTGAGCACCGT+CGG | - | chr6_4:42998404-42998423 | None:intergenic | 50.0% |
| ! | GATGTTTTTCCAGCGCCTTG+TGG | + | chr6_4:42998454-42998473 | Msa0988690:CDS | 50.0% |
| ! | TCCAGCGCCTTGTGGATTAA+AGG | + | chr6_4:42998462-42998481 | Msa0988690:CDS | 50.0% |
| ACCTTTAATCCACAAGGCGC+TGG | - | chr6_4:42998466-42998485 | None:intergenic | 50.0% | |
| CAACTCTACTTGAAGCCAGC+AGG | - | chr6_4:42998847-42998866 | None:intergenic | 50.0% | |
| !! | CTTGAAGGCGTTTGTTGCGA+AGG | + | chr6_4:42999103-42999122 | Msa0988690:intron | 50.0% |
| CAACCATGATGACCTTCACG+TGG | - | chr6_4:42999424-42999443 | None:intergenic | 50.0% | |
| CACGTGAAGGTCATCATGGT+TGG | + | chr6_4:42999422-42999441 | Msa0988690:intron | 50.0% | |
| GAAGGCTGCAACGAAACAAG+TGG | + | chr6_4:42999645-42999664 | Msa0988690:intron | 50.0% | |
| CTGCAACGAAACAAGTGGAC+TGG | + | chr6_4:42999650-42999669 | Msa0988690:intron | 50.0% | |
| AGAGTCAAACAACGCACTGG+TGG | - | chr6_4:42999711-42999730 | None:intergenic | 50.0% | |
| GCTAGAGTCAAACAACGCAC+TGG | - | chr6_4:42999714-42999733 | None:intergenic | 50.0% | |
| GGCAGTTGGCATCTCTAAGT+TGG | + | chr6_4:42999767-42999786 | Msa0988690:CDS | 50.0% | |
| ! | GTTGGCATCTCTAAGTTGGG+GGG | + | chr6_4:42999771-42999790 | Msa0988690:CDS | 50.0% |
| ACACCCTGAAACGTGAGCTT+TGG | + | chr6_4:42999993-43000012 | Msa0988690:intron | 50.0% | |
| !! | GGTTGATGAGCCATGCAAGT+TGG | + | chr6_4:43000625-43000644 | Msa0988690:CDS | 50.0% |
| GCAAGATGAGCCAACTTGCA+TGG | - | chr6_4:43000638-43000657 | None:intergenic | 50.0% | |
| GAGATTGGCACTATGGCCAT+CGG | + | chr6_4:43000712-43000731 | Msa0988690:CDS | 50.0% | |
| TATACCATTCCGAGCAGCCT+CGG | - | chr6_4:43000738-43000757 | None:intergenic | 50.0% | |
| ! | CTTGAGCAAGGTTTGCTTCG+AGG | + | chr6_4:43001233-43001252 | Msa0988690:intron | 50.0% |
| CAGTCGGAATCGGAACCAGT+CGG | + | chr6_4:42997808-42997827 | Msa0988690:CDS | 55.0% | |
| AGGCTGATCTACTACGGTGG+CGG | - | chr6_4:42997870-42997889 | None:intergenic | 55.0% | |
| CTGAGGCTGATCTACTACGG+TGG | - | chr6_4:42997873-42997892 | None:intergenic | 55.0% | |
| CGGCTGAGGCTGATCTACTA+CGG | - | chr6_4:42997876-42997895 | None:intergenic | 55.0% | |
| TCGGAACCCGTCGAAATCTC+TGG | + | chr6_4:42997928-42997947 | Msa0988690:CDS | 55.0% | |
| GGTCCCTTCGTATTGCAGGT+AGG | + | chr6_4:42998177-42998196 | Msa0988690:intron | 55.0% | |
| TCGGTTGTCCCGGGTTTCAA+AGG | + | chr6_4:42998359-42998378 | Msa0988690:CDS | 55.0% | |
| GACGGTGCTCAAAGAGTCCA+AGG | + | chr6_4:42998403-42998422 | Msa0988690:CDS | 55.0% | |
| CAGGCGCACACTCAAATCCT+TGG | - | chr6_4:42998423-42998442 | None:intergenic | 55.0% | |
| !! | GGGAGGATTAGTTGAGCAGC+CGG | + | chr6_4:42998676-42998695 | Msa0988690:CDS | 55.0% |
| !! | GTTGATGATCCCGTTCACGG+TGG | + | chr6_4:42998863-42998882 | Msa0988690:CDS | 55.0% |
| AACGTTGAGCCACCGTGAAC+GGG | - | chr6_4:42998875-42998894 | None:intergenic | 55.0% | |
| CAACGTTGAGCCACCGTGAA+CGG | - | chr6_4:42998876-42998895 | None:intergenic | 55.0% | |
| GGCTCAACGTTGCACATAGC+AGG | + | chr6_4:42998884-42998903 | Msa0988690:CDS | 55.0% | |
| ! | ACTCTAGCCAAAGCGTCTCC+TGG | + | chr6_4:42999726-42999745 | Msa0988690:CDS | 55.0% |
| ATGCCAACTGCCACGTTTGC+AGG | - | chr6_4:42999759-42999778 | None:intergenic | 55.0% | |
| CGGGAAGAGGTTGAATGAGG+TGG | - | chr6_4:43000103-43000122 | None:intergenic | 55.0% | |
| CCAGCACCAGTTGTGTCAAC+AGG | - | chr6_4:43001437-43001456 | None:intergenic | 55.0% | |
| CCTGTTGACACAACTGGTGC+TGG | + | chr6_4:43001434-43001453 | Msa0988690:intron | 55.0% | |
| ATGTGCCGCGATCACAGTGA+CGG | + | chr6_4:43001640-43001659 | Msa0988690:CDS | 55.0% | |
| TCTCTCCGTCACTGTGATCG+CGG | - | chr6_4:43001648-43001667 | None:intergenic | 55.0% | |
| ! | CGATCACAGTGACGGAGAGA+GGG | + | chr6_4:43001648-43001667 | Msa0988690:CDS | 55.0% |
| ! | GATCACAGTGACGGAGAGAG+GGG | + | chr6_4:43001649-43001668 | Msa0988690:CDS | 55.0% |
| ! | CTGATCTACTACGGTGGCGG+CGG | - | chr6_4:42997867-42997886 | None:intergenic | 60.0% |
| CTGAGGCTCAACTACGGCTG+AGG | - | chr6_4:42997890-42997909 | None:intergenic | 60.0% | |
| !! | TGCAGGCGCCTTTGAAACCC+GGG | - | chr6_4:42998370-42998389 | None:intergenic | 60.0% |
| !! | CTGCAGGCGCCTTTGAAACC+CGG | - | chr6_4:42998371-42998390 | None:intergenic | 60.0% |
| ! | CTAGCCAAAGCGTCTCCTGG+TGG | + | chr6_4:42999729-42999748 | Msa0988690:CDS | 60.0% |
| AGCACCACCAGGAGACGCTT+TGG | - | chr6_4:42999736-42999755 | None:intergenic | 60.0% | |
| !! | ACGTTTGCAGGAGCACCACC+AGG | - | chr6_4:42999747-42999766 | None:intergenic | 60.0% |
| ! | TGGTGGTGCTCCTGCAAACG+TGG | + | chr6_4:42999746-42999765 | Msa0988690:CDS | 60.0% |
| GCTCCTGCAAACGTGGCAGT+TGG | + | chr6_4:42999753-42999772 | Msa0988690:CDS | 60.0% | |
| ! | GCGATCACAGTGACGGAGAG+AGG | + | chr6_4:43001647-43001666 | Msa0988690:CDS | 60.0% |
| ! | ATCTACTACGGTGGCGGCGG+CGG | - | chr6_4:42997864-42997883 | None:intergenic | 65.0% |
| GGCACTATGGCCATCGGCCG+AGG | + | chr6_4:43000718-43000737 | Msa0988690:CDS | 70.0% | |
| TTCCGAGCAGCCTCGGCCGA+TGG | - | chr6_4:43000731-43000750 | None:intergenic | 70.0% | |
| TCGGCCGAGGCTGCTCGGAA+TGG | + | chr6_4:43000731-43000750 | Msa0988690:CDS | 70.0% | |
| ! | TACTACGGTGGCGGCGGCGG+CGG | - | chr6_4:42997861-42997880 | None:intergenic | 75.0% |
| GGCCATCGGCCGAGGCTGCT+CGG | + | chr6_4:43000726-43000745 | Msa0988690:CDS | 75.0% | |
| !! | TACGGTGGCGGCGGCGGCGG+CGG | - | chr6_4:42997858-42997877 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 42997790 | 43001943 | 42997790 | ID=Msa0988690;Name=Msa0988690 |
| chr6_4 | mRNA | 42997790 | 43001943 | 42997790 | ID=Msa0988690-mRNA-1;Parent=Msa0988690;Name=Msa0988690-mRNA-1;_AED=0.20;_eAED=0.21;_QI=0|0.5|0.44|1|1|1|9|210|513 |
| chr6_4 | exon | 42997790 | 42998194 | 42997790 | ID=Msa0988690-mRNA-1:exon:9999;Parent=Msa0988690-mRNA-1 |
| chr6_4 | exon | 42998340 | 42998483 | 42998340 | ID=Msa0988690-mRNA-1:exon:10000;Parent=Msa0988690-mRNA-1 |
| chr6_4 | exon | 42998605 | 42998732 | 42998605 | ID=Msa0988690-mRNA-1:exon:10001;Parent=Msa0988690-mRNA-1 |
| chr6_4 | exon | 42998859 | 42998905 | 42998859 | ID=Msa0988690-mRNA-1:exon:10002;Parent=Msa0988690-mRNA-1 |
| chr6_4 | exon | 42999685 | 42999815 | 42999685 | ID=Msa0988690-mRNA-1:exon:10003;Parent=Msa0988690-mRNA-1 |
| chr6_4 | exon | 43000289 | 43000501 | 43000289 | ID=Msa0988690-mRNA-1:exon:10004;Parent=Msa0988690-mRNA-1 |
| chr6_4 | exon | 43000593 | 43000790 | 43000593 | ID=Msa0988690-mRNA-1:exon:10005;Parent=Msa0988690-mRNA-1 |
| chr6_4 | exon | 43000916 | 43001056 | 43000916 | ID=Msa0988690-mRNA-1:exon:10006;Parent=Msa0988690-mRNA-1 |
| chr6_4 | exon | 43001599 | 43001943 | 43001599 | ID=Msa0988690-mRNA-1:exon:10007;Parent=Msa0988690-mRNA-1 |
| chr6_4 | CDS | 42997790 | 42998194 | 42997790 | ID=Msa0988690-mRNA-1:cds;Parent=Msa0988690-mRNA-1 |
| chr6_4 | CDS | 42998340 | 42998483 | 42998340 | ID=Msa0988690-mRNA-1:cds;Parent=Msa0988690-mRNA-1 |
| chr6_4 | CDS | 42998605 | 42998732 | 42998605 | ID=Msa0988690-mRNA-1:cds;Parent=Msa0988690-mRNA-1 |
| chr6_4 | CDS | 42998859 | 42998905 | 42998859 | ID=Msa0988690-mRNA-1:cds;Parent=Msa0988690-mRNA-1 |
| chr6_4 | CDS | 42999685 | 42999815 | 42999685 | ID=Msa0988690-mRNA-1:cds;Parent=Msa0988690-mRNA-1 |
| chr6_4 | CDS | 43000289 | 43000501 | 43000289 | ID=Msa0988690-mRNA-1:cds;Parent=Msa0988690-mRNA-1 |
| chr6_4 | CDS | 43000593 | 43000790 | 43000593 | ID=Msa0988690-mRNA-1:cds;Parent=Msa0988690-mRNA-1 |
| chr6_4 | CDS | 43000916 | 43001056 | 43000916 | ID=Msa0988690-mRNA-1:cds;Parent=Msa0988690-mRNA-1 |
| chr6_4 | CDS | 43001599 | 43001733 | 43001599 | ID=Msa0988690-mRNA-1:cds;Parent=Msa0988690-mRNA-1 |
| chr6_4 | three_prime_UTR | 43001734 | 43001943 | 43001734 | ID=Msa0988690-mRNA-1:three_prime_utr;Parent=Msa0988690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
