Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0913860 | KEH41938.1 | 56.506 | 561 | 185 | 10 | 25 | 529 | 3 | 560 | 0.0 | 535 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0913860 | sp|Q9FLH8|SCRK7_ARATH | 65.528 | 322 | 106 | 1 | 211 | 527 | 13 | 334 | 1.13e-142 | 417 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0719090 | Msa0913860 | 0.800899 | 1.160733e-48 | -8.615850e-47 |
| Msa0719390 | Msa0913860 | 0.804096 | 2.545613e-49 | -8.615850e-47 |
| Msa0789640 | Msa0913860 | 0.808276 | 3.352834e-50 | -8.615850e-47 |
| Msa0213670 | Msa0913860 | 0.845244 | 4.581839e-59 | -8.615850e-47 |
| Msa0887600 | Msa0913860 | 0.925229 | 2.433839e-90 | -8.615850e-47 |
| Msa0913860 | Msa0988690 | 0.888496 | 5.605735e-73 | -8.615850e-47 |
| Msa0913860 | Msa1305900 | 0.811858 | 5.673010e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0913860 | MtrunA17_Chr1g0204101 | 77.151 | 337 | 71 | 2 | 202 | 533 | 5 | 340 | 0.0 | 511 |
| Msa0913860 | MtrunA17_Chr1g0177771 | 55.258 | 561 | 184 | 11 | 25 | 529 | 3 | 552 | 1.61e-178 | 514 |
| Msa0913860 | MtrunA17_Chr6g0474331 | 72.189 | 338 | 86 | 2 | 207 | 536 | 11 | 348 | 1.78e-167 | 478 |
| Msa0913860 | MtrunA17_Chr1g0183241 | 61.593 | 427 | 122 | 8 | 127 | 533 | 2 | 406 | 1.08e-162 | 468 |
| Msa0913860 | MtrunA17_Chr1g0177321 | 53.144 | 493 | 155 | 9 | 89 | 529 | 1 | 469 | 3.64e-141 | 416 |
| Msa0913860 | MtrunA17_Chr1g0171921 | 67.802 | 323 | 100 | 3 | 211 | 529 | 173 | 495 | 7.14e-135 | 401 |
| Msa0913860 | MtrunA17_Chr1g0171921 | 67.391 | 46 | 15 | 0 | 45 | 90 | 68 | 113 | 1.32e-11 | 67.0 |
| Msa0913860 | MtrunA17_Chr5g0434971 | 61.446 | 332 | 120 | 3 | 205 | 529 | 49 | 379 | 2.87e-131 | 387 |
| Msa0913860 | MtrunA17_Chr1g0183661 | 71.168 | 274 | 67 | 2 | 243 | 516 | 15 | 276 | 5.61e-128 | 375 |
| Msa0913860 | MtrunA17_Chr4g0033631 | 54.517 | 321 | 139 | 2 | 219 | 534 | 13 | 331 | 1.47e-115 | 345 |
| Msa0913860 | MtrunA17_Chr1g0188291 | 54.286 | 315 | 137 | 3 | 221 | 530 | 8 | 320 | 3.59e-115 | 344 |
| Msa0913860 | MtrunA17_Chr2g0329451 | 52.424 | 330 | 146 | 3 | 206 | 530 | 3 | 326 | 1.75e-114 | 342 |
| Msa0913860 | MtrunA17_Chr1g0176221 | 60.084 | 238 | 64 | 2 | 293 | 530 | 1 | 207 | 3.97e-81 | 252 |
| Msa0913860 | MtrunA17_Chr7g0246421 | 56.842 | 190 | 82 | 0 | 340 | 529 | 2 | 191 | 4.33e-68 | 218 |
| Msa0913860 | MtrunA17_Chr4g0020911 | 72.388 | 134 | 37 | 0 | 340 | 473 | 56 | 189 | 1.71e-55 | 185 |
| Msa0913860 | MtrunA17_Chr8g0386161 | 50.847 | 177 | 63 | 6 | 45 | 201 | 83 | 255 | 4.03e-40 | 155 |
| Msa0913860 | MtrunA17_Chr7g0246411 | 55.118 | 127 | 50 | 2 | 221 | 340 | 41 | 167 | 1.53e-35 | 131 |
| Msa0913860 | MtrunA17_Chr5g0419371 | 27.575 | 301 | 195 | 4 | 245 | 525 | 253 | 550 | 8.79e-34 | 135 |
| Msa0913860 | MtrunA17_Chr4g0008441 | 28.291 | 357 | 204 | 6 | 221 | 526 | 93 | 448 | 1.02e-32 | 130 |
| Msa0913860 | MtrunA17_Chr4g0020921 | 41.176 | 187 | 67 | 7 | 127 | 270 | 2 | 188 | 7.65e-23 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0913860 | AT5G51830.2 | 65.528 | 322 | 106 | 1 | 211 | 527 | 13 | 334 | 1.15e-143 | 417 |
| Msa0913860 | AT5G51830.1 | 65.528 | 322 | 106 | 1 | 211 | 527 | 13 | 334 | 1.15e-143 | 417 |
| Msa0913860 | AT1G66430.1 | 59.026 | 349 | 135 | 3 | 195 | 536 | 37 | 384 | 4.94e-137 | 402 |
| Msa0913860 | AT4G10260.1 | 56.818 | 308 | 126 | 3 | 221 | 523 | 6 | 311 | 2.13e-116 | 347 |
| Msa0913860 | AT1G06030.1 | 52.000 | 325 | 149 | 2 | 211 | 530 | 1 | 323 | 5.64e-113 | 338 |
| Msa0913860 | AT3G59480.1 | 52.681 | 317 | 143 | 3 | 216 | 527 | 5 | 319 | 7.80e-112 | 335 |
| Msa0913860 | AT2G31390.1 | 52.632 | 323 | 146 | 2 | 216 | 533 | 4 | 324 | 8.07e-111 | 333 |
| Msa0913860 | AT1G06020.1 | 51.582 | 316 | 146 | 2 | 220 | 530 | 9 | 322 | 7.23e-109 | 328 |
| Msa0913860 | AT1G50390.1 | 42.197 | 173 | 69 | 1 | 361 | 533 | 1 | 142 | 5.09e-37 | 134 |
| Msa0913860 | AT3G54090.1 | 29.888 | 358 | 198 | 8 | 221 | 527 | 103 | 458 | 8.52e-36 | 139 |
| Msa0913860 | AT1G69200.1 | 27.439 | 328 | 199 | 6 | 221 | 510 | 206 | 532 | 6.94e-31 | 127 |
| Msa0913860 | AT5G63540.2 | 44.134 | 179 | 78 | 5 | 43 | 202 | 109 | 284 | 1.79e-30 | 126 |
| Msa0913860 | AT5G63540.1 | 43.820 | 178 | 78 | 5 | 43 | 201 | 109 | 283 | 4.76e-30 | 125 |
Find 138 sgRNAs with CRISPR-Local
Find 281 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATATTAGCACTAGGATTT+TGG | 0.158504 | 6_2:-25774059 | None:intergenic |
| CAACTTGGAGATTCGTTAAA+TGG | 0.186789 | 6_2:+25771804 | Msa0913860:CDS |
| TACGGTGGCGGCGGCGGCGG+CGG | 0.260934 | 6_2:-25771626 | None:intergenic |
| CCTGAAAATATTAGAGTATT+GGG | 0.261461 | 6_2:+25772420 | Msa0913860:CDS |
| CAGGCTAAAATATTCCATTA+TGG | 0.292003 | 6_2:+25774211 | Msa0913860:intron |
| TCCTAGTGCTAATATGCTTC+TGG | 0.296089 | 6_2:+25774065 | Msa0913860:CDS |
| CCATTATGGTTCCATGAGTT+TGG | 0.297448 | 6_2:+25774225 | Msa0913860:CDS |
| TGTTTAGGTGAAATGTTAAT+AGG | 0.301263 | 6_2:+25773355 | Msa0913860:CDS |
| TAGGTTGGAGCAGATGAATT+TGG | 0.306305 | 6_2:+25773907 | Msa0913860:intron |
| AGGTTGGAGCAGATGAATTT+GGG | 0.318393 | 6_2:+25773908 | Msa0913860:intron |
| ATACGCCATCTAGGGGAAAA+AGG | 0.327380 | 6_2:+25772478 | Msa0913860:CDS |
| TCCAGCGCCTTGTGGATTAA+AGG | 0.327589 | 6_2:+25772233 | Msa0913860:CDS |
| TGATGGTCCCTTCGTATTGC+AGG | 0.331157 | 6_2:+25771944 | Msa0913860:CDS |
| ATGCCAACTGCCACATTTGC+AGG | 0.352035 | 6_2:-25773433 | None:intergenic |
| AACAAAAGCCGATTTGGTTC+TGG | 0.352069 | 6_2:-25773998 | None:intergenic |
| GCAGTTGGCATCTCTAAGTT+GGG | 0.364961 | 6_2:+25773445 | Msa0913860:CDS |
| CAAAATAATGTTGATACATC+TGG | 0.377336 | 6_2:+25773955 | Msa0913860:CDS |
| TACTACGGTGGCGGCGGCGG+CGG | 0.378056 | 6_2:-25771629 | None:intergenic |
| TGAATTACCTTGAAAATACT+TGG | 0.378570 | 6_2:-25775025 | None:intergenic |
| AAGTGTAACAAAAGCCGATT+TGG | 0.378760 | 6_2:-25774004 | None:intergenic |
| CGAGTTTGAGATTGGCACTA+TGG | 0.381322 | 6_2:+25774326 | Msa0913860:CDS |
| AAGCTTCTAATTGTTACTAA+AGG | 0.390317 | 6_2:+25774631 | Msa0913860:CDS |
| CCAAACTCATGGAACCATAA+TGG | 0.394145 | 6_2:-25774225 | None:intergenic |
| AGTGGACTGGTTGTTTGTTT+AGG | 0.395626 | 6_2:+25773340 | Msa0913860:CDS |
| AGCACCACCAGGAGACGATT+TGG | 0.403011 | 6_2:-25773410 | None:intergenic |
| AGCTTCTAATTGTTACTAAA+GGG | 0.405353 | 6_2:+25774632 | Msa0913860:CDS |
| AGTCCTGTACTGCAACATTC+AGG | 0.407210 | 6_2:+25775372 | Msa0913860:three_prime_UTR |
| TCAAAGAGTCCTTGGATTTG+AGG | 0.416579 | 6_2:+25772182 | Msa0913860:CDS |
| TTCTATTGCCAGAACCAAAT+CGG | 0.422298 | 6_2:+25773990 | Msa0913860:CDS |
| GTGCTCATAACTACTCTTGA+TGG | 0.423814 | 6_2:+25771927 | Msa0913860:CDS |
| GGCAGTTGGCATCTCTAAGT+TGG | 0.424338 | 6_2:+25773444 | Msa0913860:CDS |
| ATGAACTAAATACGCCATCT+AGG | 0.425379 | 6_2:+25772469 | Msa0913860:CDS |
| ATATGATCCGAGTTTGAGAT+TGG | 0.429480 | 6_2:+25774318 | Msa0913860:CDS |
| ATCTACTACGGTGGCGGCGG+CGG | 0.432026 | 6_2:-25771632 | None:intergenic |
| GTGGATGAAATTATCAATAT+CGG | 0.433855 | 6_2:+25772111 | Msa0913860:CDS |
| TCCTGAAAATATTAGAGTAT+TGG | 0.436369 | 6_2:+25772419 | Msa0913860:CDS |
| GAATCTAGCCCATGTCATAA+AGG | 0.438471 | 6_2:+25774390 | Msa0913860:CDS |
| GCCACAAGTTCCCTTGAAAT+CGG | 0.441669 | 6_2:+25771680 | Msa0913860:CDS |
| TAGCCTGAATGTTGCAGTAC+AGG | 0.445724 | 6_2:-25775375 | None:intergenic |
| GGCGTATTTAGTTCATCAAC+CGG | 0.448030 | 6_2:-25772462 | None:intergenic |
| TCTCTTGCCAAATCGTCTCC+TGG | 0.449403 | 6_2:+25773403 | Msa0913860:CDS |
| TTCGACGGGTTCCGATTTCA+AGG | 0.451889 | 6_2:-25771691 | None:intergenic |
| CTGGTGATGCATTTGTTAGT+GGG | 0.458027 | 6_2:+25774978 | Msa0913860:CDS |
| GCTGGTGATGCATTTGTTAG+TGG | 0.461233 | 6_2:+25774977 | Msa0913860:CDS |
| TGACAGCTCGCATAATCAAA+AGG | 0.464975 | 6_2:-25775428 | None:intergenic |
| AAAACATCAAGGGCATCAAT+AGG | 0.469073 | 6_2:-25772210 | None:intergenic |
| ACCTTTAATCCACAAGGCGC+TGG | 0.469198 | 6_2:-25772234 | None:intergenic |
| TTATGAGCACTTGAGAAGTA+AGG | 0.469831 | 6_2:-25771914 | None:intergenic |
| ATTATCAATATCGGTTGTCC+CGG | 0.471772 | 6_2:+25772120 | Msa0913860:CDS |
| CCAGCACCAGTTGTGTCAAC+AGG | 0.471899 | 6_2:-25774959 | None:intergenic |
| GGCCATCAGCCGAGGCTGCT+CGG | 0.478564 | 6_2:+25774347 | Msa0913860:CDS |
| CTGCAGGCGCCTTTGAAACC+CGG | 0.483022 | 6_2:-25772139 | None:intergenic |
| GACGGTGCTCAAAGAGTCCT+TGG | 0.484881 | 6_2:+25772174 | Msa0913860:CDS |
| AAGTGTAAAACAGTCGGAAT+CGG | 0.487194 | 6_2:+25771569 | Msa0913860:CDS |
| TTCCGAGCAGCCTCGGCTGA+TGG | 0.490443 | 6_2:-25774349 | None:intergenic |
| TTCAAGGGAACTTGTGGCTG+AGG | 0.492988 | 6_2:-25771675 | None:intergenic |
| TATAAAACAAAATAACACTT+TGG | 0.495078 | 6_2:-25775265 | None:intergenic |
| GTTGAACCTGTTGACACAAC+TGG | 0.496302 | 6_2:+25774953 | Msa0913860:CDS |
| CTGAGGCTCAACTACGGCTG+AGG | 0.496800 | 6_2:-25771658 | None:intergenic |
| CCTGTTGACACAACTGGTGC+TGG | 0.498429 | 6_2:+25774959 | Msa0913860:CDS |
| GACAGCTCGCATAATCAAAA+GGG | 0.499502 | 6_2:-25775427 | None:intergenic |
| GGAATGGTATAATGAGCATA+TGG | 0.500805 | 6_2:+25774368 | Msa0913860:CDS |
| CAGTTGGCATCTCTAAGTTG+GGG | 0.501143 | 6_2:+25773446 | Msa0913860:CDS |
| TTACTTCTCTGCAGTGCTAC+CGG | 0.504380 | 6_2:+25773233 | Msa0913860:intron |
| TGAACTAAATACGCCATCTA+GGG | 0.505518 | 6_2:+25772470 | Msa0913860:CDS |
| TCCGATTTCAAGGGAACTTG+TGG | 0.512790 | 6_2:-25771681 | None:intergenic |
| TTCTAATTGTTACTAAAGGG+TGG | 0.516676 | 6_2:+25774635 | Msa0913860:CDS |
| TAGCGAAATATAACGCGTCT+TGG | 0.517052 | 6_2:-25775135 | None:intergenic |
| AAAATTTACCTTTATGACAT+GGG | 0.517576 | 6_2:-25774398 | None:intergenic |
| TGGTGGTGCTCCTGCAAATG+TGG | 0.517905 | 6_2:+25773423 | Msa0913860:CDS |
| GCAAGATGAGCCAACTTGCA+TGG | 0.531183 | 6_2:-25774256 | None:intergenic |
| TCGGTTGTCCCGGGTTTCAA+AGG | 0.531274 | 6_2:+25772130 | Msa0913860:CDS |
| AGTGATTTCACCTTCCGACT+TGG | 0.531440 | 6_2:+25775327 | Msa0913860:three_prime_UTR |
| TTCATCTGCATTTATAAGCA+AGG | 0.542858 | 6_2:+25773471 | Msa0913860:CDS |
| GCTGATTGTCTTCGCCAACT+TGG | 0.543091 | 6_2:+25771789 | Msa0913860:CDS |
| GAATTACCTTGAAAATACTT+GGG | 0.544694 | 6_2:-25775024 | None:intergenic |
| AACATATAAATATGTTGACT+TGG | 0.546312 | 6_2:+25775399 | Msa0913860:three_prime_UTR |
| TGGCTCATCAACCAAACTCA+TGG | 0.548985 | 6_2:-25774236 | None:intergenic |
| CATTTAACGAATCTCCAAGT+TGG | 0.549382 | 6_2:-25771803 | None:intergenic |
| TAAAATTTACCTTTATGACA+TGG | 0.549438 | 6_2:-25774399 | None:intergenic |
| TATGAGCACTTGAGAAGTAA+GGG | 0.552655 | 6_2:-25771913 | None:intergenic |
| TAATGGGCACCTTCTTGATG+AGG | 0.553517 | 6_2:-25774110 | None:intergenic |
| AGTTGGCATCTCTAAGTTGG+GGG | 0.556296 | 6_2:+25773447 | Msa0913860:CDS |
| GGGAGGATTAGTTGAGCAGC+CGG | 0.558205 | 6_2:+25772443 | Msa0913860:CDS |
| TGCAGGCGCCTTTGAAACCC+GGG | 0.560661 | 6_2:-25772138 | None:intergenic |
| TTATCAATATCGGTTGTCCC+GGG | 0.560699 | 6_2:+25772121 | Msa0913860:CDS |
| CATAGTGCCAATCTCAAACT+CGG | 0.562066 | 6_2:-25774325 | None:intergenic |
| CTGAAAATATTAGAGTATTG+GGG | 0.562723 | 6_2:+25772421 | Msa0913860:CDS |
| TCTAATTGTTACTAAAGGGT+GGG | 0.567673 | 6_2:+25774636 | Msa0913860:CDS |
| TAGCACTACCACAAGAATTG+AGG | 0.570518 | 6_2:-25771881 | None:intergenic |
| CTGATCTACTACGGTGGCGG+CGG | 0.570680 | 6_2:-25771635 | None:intergenic |
| TCAGCCGAGGCTGCTCGGAA+TGG | 0.571140 | 6_2:+25774352 | Msa0913860:CDS |
| TATACCATTCCGAGCAGCCT+CGG | 0.576856 | 6_2:-25774356 | None:intergenic |
| GCGATCACAGTGACGGAGAG+AGG | 0.576921 | 6_2:+25775169 | Msa0913860:CDS |
| CGATCACAGTGACGGAGAGA+GGG | 0.581432 | 6_2:+25775170 | Msa0913860:CDS |
| CTGCAACGAAACAAGTGGAC+TGG | 0.590072 | 6_2:+25773327 | Msa0913860:CDS |
| AATTGTTACTAAAGGGTGGG+AGG | 0.590466 | 6_2:+25774639 | Msa0913860:CDS |
| GCTCCTGCAAATGTGGCAGT+TGG | 0.592878 | 6_2:+25773430 | Msa0913860:CDS |
| CGGCTGAGGCTGATCTACTA+CGG | 0.594384 | 6_2:-25771644 | None:intergenic |
| TGATCATAACCTCATCAAGA+AGG | 0.598780 | 6_2:+25774101 | Msa0913860:CDS |
| AGATGAATTTGGGTATATGT+TGG | 0.599101 | 6_2:+25773918 | Msa0913860:CDS |
| AAGGACTCTTTGAGCACCGT+CGG | 0.602125 | 6_2:-25772172 | None:intergenic |
| TGAAAATATTAGAGTATTGG+GGG | 0.604031 | 6_2:+25772422 | Msa0913860:CDS |
| GGCACTATGGCCATCAGCCG+AGG | 0.605030 | 6_2:+25774339 | Msa0913860:CDS |
| TCGACGGGTTCCGATTTCAA+GGG | 0.609396 | 6_2:-25771690 | None:intergenic |
| GGTTGATGAGCCATGCAAGT+TGG | 0.610523 | 6_2:+25774246 | Msa0913860:CDS |
| TAGGCGCATCCTCAAATCCA+AGG | 0.610527 | 6_2:-25772191 | None:intergenic |
| GAAGGCTGCAACGAAACAAG+TGG | 0.613114 | 6_2:+25773322 | Msa0913860:CDS |
| TCCAGAAGCATATTAGCACT+AGG | 0.613601 | 6_2:-25774066 | None:intergenic |
| ACATTTGCAGGAGCACCACC+AGG | 0.615766 | 6_2:-25773421 | None:intergenic |
| TCTGATGGGCTCATAACAGA+AGG | 0.620013 | 6_2:+25773304 | Msa0913860:CDS |
| GTTGGCATCTCTAAGTTGGG+GGG | 0.621474 | 6_2:+25773448 | Msa0913860:CDS |
| GCAAGAGACAAACAACGCAC+TGG | 0.621785 | 6_2:-25773388 | None:intergenic |
| GGTTAAAATCTCTAATGTAG+AGG | 0.625016 | 6_2:+25772371 | Msa0913860:intron |
| TGTGCTACAGAGATTCCGAC+TGG | 0.629797 | 6_2:-25771594 | None:intergenic |
| AGAGTCTTCAGCAATTCTCA+AGG | 0.632621 | 6_2:-25774281 | None:intergenic |
| GGAACCTACCTGCAATACGA+AGG | 0.636337 | 6_2:-25771952 | None:intergenic |
| GCTATCAAAACCAAGTCGGA+AGG | 0.637115 | 6_2:-25775337 | None:intergenic |
| GAACTAAATACGCCATCTAG+GGG | 0.637946 | 6_2:+25772471 | Msa0913860:CDS |
| ATTGTTACTAAAGGGTGGGA+GGG | 0.642680 | 6_2:+25774640 | Msa0913860:CDS |
| TAGTGCTATCAAAACCAAGT+CGG | 0.644703 | 6_2:-25775341 | None:intergenic |
| GATCACAGTGACGGAGAGAG+GGG | 0.644841 | 6_2:+25775171 | Msa0913860:CDS |
| GAACCTACCTGCAATACGAA+GGG | 0.645182 | 6_2:-25771951 | None:intergenic |
| AGGCTGATCTACTACGGTGG+CGG | 0.646453 | 6_2:-25771638 | None:intergenic |
| CTGAGGCTGATCTACTACGG+TGG | 0.650238 | 6_2:-25771641 | None:intergenic |
| AGAGACAAACAACGCACTGG+TGG | 0.663484 | 6_2:-25773385 | None:intergenic |
| CTTGCCAAATCGTCTCCTGG+TGG | 0.666210 | 6_2:+25773406 | Msa0913860:CDS |
| TCTCTCCGTCACTGTGATCG+CGG | 0.666326 | 6_2:-25775167 | None:intergenic |
| ACAGCTCGCATAATCAAAAG+GGG | 0.669798 | 6_2:-25775426 | None:intergenic |
| TTGTGGCTGAGGCTCAACTA+CGG | 0.670261 | 6_2:-25771664 | None:intergenic |
| CAGTCGGAATCGGAACCAGT+CGG | 0.671295 | 6_2:+25771579 | Msa0913860:CDS |
| AGCACTTGAGAAGTAAGGGT+AGG | 0.672625 | 6_2:-25771909 | None:intergenic |
| GAAAATATTAGAGTATTGGG+GGG | 0.673581 | 6_2:+25772423 | Msa0913860:CDS |
| ATGTTGATACATCTGGCATG+CGG | 0.677431 | 6_2:+25773962 | Msa0913860:CDS |
| ATGTGCCGCGATCACAGTGA+CGG | 0.677848 | 6_2:+25775162 | Msa0913860:CDS |
| TCTAATGTAGAGGTTATACG+TGG | 0.722002 | 6_2:+25772381 | Msa0913860:CDS |
| GAAGAAACCTTTAATCCACA+AGG | 0.724250 | 6_2:-25772240 | None:intergenic |
| GGGTCGTAGATATTACACCA+AGG | 0.763883 | 6_2:+25774660 | Msa0913860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAATAAATAAATTAA+AGG | - | chr6_2:25773216-25773235 | None:intergenic | 0.0% |
| !! | TTAATTTAACAATAAGAAAA+CGG | - | chr6_2:25773744-25773763 | None:intergenic | 10.0% |
| !!! | ACATATATTACATTTTATAA+CGG | - | chr6_2:25775301-25775320 | None:intergenic | 10.0% |
| !! | AATACAATAAATTAACTGAA+TGG | - | chr6_2:25771976-25771995 | None:intergenic | 15.0% |
| !! | GTTAATTTATTGTATTCTTA+AGG | + | chr6_2:25771980-25771999 | Msa0913860:intron | 15.0% |
| !! | TTATATATATTCAGATGAAA+AGG | - | chr6_2:25772281-25772300 | None:intergenic | 15.0% |
| !!! | ACTGATTTGATTTAATTTTT+TGG | - | chr6_2:25773005-25773024 | None:intergenic | 15.0% |
| !! | TAATTTAACAATAAGAAAAC+GGG | - | chr6_2:25773743-25773762 | None:intergenic | 15.0% |
| !! | AGTAAATACATAATATTTCT+AGG | - | chr6_2:25773786-25773805 | None:intergenic | 15.0% |
| !!! | ATATTTAAAAAGCTTTTTCA+AGG | + | chr6_2:25774601-25774620 | Msa0913860:CDS | 15.0% |
| !!! | TATTTAAAAAGCTTTTTCAA+GGG | + | chr6_2:25774602-25774621 | Msa0913860:CDS | 15.0% |
| !! | CAAAGAAAATAATTAAATGA+GGG | - | chr6_2:25774742-25774761 | None:intergenic | 15.0% |
| !! | TATAAAACAAAATAACACTT+TGG | - | chr6_2:25775268-25775287 | None:intergenic | 15.0% |
| !!! | AAAGTGTTATTTTGTTTTAT+AGG | + | chr6_2:25775267-25775286 | Msa0913860:three_prime_UTR | 15.0% |
| !! | TAATAGAATTTCCATCATAT+AGG | - | chr6_2:25772029-25772048 | None:intergenic | 20.0% |
| !! | TACAAATTAATCATTCCAAT+TGG | + | chr6_2:25772501-25772520 | Msa0913860:intron | 20.0% |
| !!! | TGGAAAATGTTTAGTTTAAT+AGG | + | chr6_2:25772547-25772566 | Msa0913860:intron | 20.0% |
| !!! | GGAAAATGTTTAGTTTAATA+GGG | + | chr6_2:25772548-25772567 | Msa0913860:intron | 20.0% |
| !! | TGTAAAGTTGCAAAATAATT+TGG | + | chr6_2:25772974-25772993 | Msa0913860:intron | 20.0% |
| !!! | TTTTGAATTCAACTATAACA+TGG | - | chr6_2:25773135-25773154 | None:intergenic | 20.0% |
| !!! | AACTTAATAATGATGTTTTG+TGG | + | chr6_2:25773170-25773189 | Msa0913860:intron | 20.0% |
| !! | AAATAGAAAATACGAGTAAA+AGG | - | chr6_2:25773688-25773707 | None:intergenic | 20.0% |
| !!! | TTCTGAATTTTAATCTATGT+TGG | + | chr6_2:25773845-25773864 | Msa0913860:intron | 20.0% |
| !!! | TTTAATTTTATACTGATTGC+AGG | + | chr6_2:25774192-25774211 | Msa0913860:intron | 20.0% |
| !! | AAAATTTACCTTTATGACAT+GGG | - | chr6_2:25774401-25774420 | None:intergenic | 20.0% |
| !! | TAAAATTTACCTTTATGACA+TGG | - | chr6_2:25774402-25774421 | None:intergenic | 20.0% |
| !!! | ATTACTTTTTTGATTGATGT+TGG | + | chr6_2:25774556-25774575 | Msa0913860:CDS | 20.0% |
| !! | GCAAAGAAAATAATTAAATG+AGG | - | chr6_2:25774743-25774762 | None:intergenic | 20.0% |
| !! | TTAGAAAAAATTTCAGTGTT+TGG | + | chr6_2:25775076-25775095 | Msa0913860:intron | 20.0% |
| !!! | AACATATAAATATGTTGACT+TGG | + | chr6_2:25775399-25775418 | Msa0913860:three_prime_UTR | 20.0% |
| ! | TAAATTATGCTCCTATATGA+TGG | + | chr6_2:25772015-25772034 | Msa0913860:intron | 25.0% |
| ! | GTGGATGAAATTATCAATAT+CGG | + | chr6_2:25772111-25772130 | Msa0913860:CDS | 25.0% |
| ! | TCCTGAAAATATTAGAGTAT+TGG | + | chr6_2:25772419-25772438 | Msa0913860:CDS | 25.0% |
| !! | CCTGAAAATATTAGAGTATT+GGG | + | chr6_2:25772420-25772439 | Msa0913860:CDS | 25.0% |
| !!! | CTGAAAATATTAGAGTATTG+GGG | + | chr6_2:25772421-25772440 | Msa0913860:CDS | 25.0% |
| !!! | TGAAAATATTAGAGTATTGG+GGG | + | chr6_2:25772422-25772441 | Msa0913860:CDS | 25.0% |
| !! | AACTAAACATTTTCCATTGT+TGG | - | chr6_2:25772543-25772562 | None:intergenic | 25.0% |
| ! | AAAAAAGTTTGCACCAAATT+AGG | - | chr6_2:25772576-25772595 | None:intergenic | 25.0% |
| ! | TGTTTAGGTGAAATGTTAAT+AGG | + | chr6_2:25773355-25773374 | Msa0913860:CDS | 25.0% |
| ! | GATTTATTGACATGGTTATT+TGG | + | chr6_2:25773510-25773529 | Msa0913860:intron | 25.0% |
| !! | AGTTTTCAACAAATCAAACA+TGG | - | chr6_2:25773560-25773579 | None:intergenic | 25.0% |
| ! | TTAAGAAATCTGTTATGTGT+TGG | + | chr6_2:25773586-25773605 | Msa0913860:intron | 25.0% |
| ! | TAAGAAATCTGTTATGTGTT+GGG | + | chr6_2:25773587-25773606 | Msa0913860:intron | 25.0% |
| !! | GAATGTAACATTTTCATGTT+TGG | + | chr6_2:25773636-25773655 | Msa0913860:intron | 25.0% |
| ! | CAAAATAATGTTGATACATC+TGG | + | chr6_2:25773955-25773974 | Msa0913860:CDS | 25.0% |
| ! | AAACAGAGATGGAAATTAAT+GGG | - | chr6_2:25774129-25774148 | None:intergenic | 25.0% |
| ! | TAAACAGAGATGGAAATTAA+TGG | - | chr6_2:25774130-25774149 | None:intergenic | 25.0% |
| ! | AAGCTTCTAATTGTTACTAA+AGG | + | chr6_2:25774631-25774650 | Msa0913860:CDS | 25.0% |
| ! | AGCTTCTAATTGTTACTAAA+GGG | + | chr6_2:25774632-25774651 | Msa0913860:CDS | 25.0% |
| ! | AAATCTGAGTTAAATGACTT+TGG | - | chr6_2:25774694-25774713 | None:intergenic | 25.0% |
| !!! | CAGATTTTAATTGTCTGAAT+AGG | + | chr6_2:25774707-25774726 | Msa0913860:intron | 25.0% |
| !! | TGATTACTAAATTTTTGTGC+AGG | + | chr6_2:25774901-25774920 | Msa0913860:intron | 25.0% |
| !! | AATTTTTGTGCAGGATTTTA+AGG | + | chr6_2:25774910-25774929 | Msa0913860:intron | 25.0% |
| !! | ATTTTTGTGCAGGATTTTAA+GGG | + | chr6_2:25774911-25774930 | Msa0913860:intron | 25.0% |
| ! | GAATTACCTTGAAAATACTT+GGG | - | chr6_2:25775027-25775046 | None:intergenic | 25.0% |
| ! | TGAATTACCTTGAAAATACT+TGG | - | chr6_2:25775028-25775047 | None:intergenic | 25.0% |
| !!! | TAAACAGATTTCCGCTTTTT+TGG | - | chr6_2:25771841-25771860 | None:intergenic | 30.0% |
| GGTTAAAATCTCTAATGTAG+AGG | + | chr6_2:25772371-25772390 | Msa0913860:intron | 30.0% | |
| ! | CCCAATACTCTAATATTTTC+AGG | - | chr6_2:25772423-25772442 | None:intergenic | 30.0% |
| !! | GAAAATATTAGAGTATTGGG+GGG | + | chr6_2:25772423-25772442 | Msa0913860:CDS | 30.0% |
| GTTTAATAGGGAACCTAATT+TGG | + | chr6_2:25772560-25772579 | Msa0913860:intron | 30.0% | |
| ATGCAATAGAGAACCTAATA+AGG | + | chr6_2:25772680-25772699 | Msa0913860:intron | 30.0% | |
| ! | ATTTCAGAGTATCATCATTG+TGG | - | chr6_2:25772762-25772781 | None:intergenic | 30.0% |
| AAGAAGTGATATTCCAAGTA+TGG | + | chr6_2:25772863-25772882 | Msa0913860:intron | 30.0% | |
| !!! | TACTTTTTCTTGTCCATACT+TGG | - | chr6_2:25772879-25772898 | None:intergenic | 30.0% |
| TTCATCTGCATTTATAAGCA+AGG | + | chr6_2:25773471-25773490 | Msa0913860:CDS | 30.0% | |
| TATGTCTCGATTTATTGACA+TGG | + | chr6_2:25773502-25773521 | Msa0913860:intron | 30.0% | |
| AGATGAATTTGGGTATATGT+TGG | + | chr6_2:25773918-25773937 | Msa0913860:CDS | 30.0% | |
| ! | CCACATTTTATAAACAGAGA+TGG | - | chr6_2:25774140-25774159 | None:intergenic | 30.0% |
| CCATCTCTGTTTATAAAATG+TGG | + | chr6_2:25774137-25774156 | Msa0913860:intron | 30.0% | |
| ACTTAAACCATAGGTCTTTA+TGG | - | chr6_2:25774163-25774182 | None:intergenic | 30.0% | |
| ATCATACAGACTTAAACCAT+AGG | - | chr6_2:25774172-25774191 | None:intergenic | 30.0% | |
| CAGGCTAAAATATTCCATTA+TGG | + | chr6_2:25774211-25774230 | Msa0913860:intron | 30.0% | |
| GAAAATAGAATGAAGTGCAA+TGG | - | chr6_2:25774477-25774496 | None:intergenic | 30.0% | |
| AATAACACTTCAGATAGACT+CGG | - | chr6_2:25774505-25774524 | None:intergenic | 30.0% | |
| TTCTAATTGTTACTAAAGGG+TGG | + | chr6_2:25774635-25774654 | Msa0913860:CDS | 30.0% | |
| TCTAATTGTTACTAAAGGGT+GGG | + | chr6_2:25774636-25774655 | Msa0913860:CDS | 30.0% | |
| ! | GGGAAAAAGTGTAAAACAGT+CGG | + | chr6_2:25771563-25771582 | Msa0913860:CDS | 35.0% |
| AAGTGTAAAACAGTCGGAAT+CGG | + | chr6_2:25771569-25771588 | Msa0913860:CDS | 35.0% | |
| !! | GATTGGTTTGAAGAGAGATA+AGG | + | chr6_2:25771764-25771783 | Msa0913860:intron | 35.0% |
| CATTTAACGAATCTCCAAGT+TGG | - | chr6_2:25771806-25771825 | None:intergenic | 35.0% | |
| CAACTTGGAGATTCGTTAAA+TGG | + | chr6_2:25771804-25771823 | Msa0913860:CDS | 35.0% | |
| CTTTGATGTCTCCAAAAAAG+CGG | + | chr6_2:25771827-25771846 | Msa0913860:CDS | 35.0% | |
| ! | TTTTCTGACCTCAATTCTTG+TGG | + | chr6_2:25771873-25771892 | Msa0913860:CDS | 35.0% |
| TATGAGCACTTGAGAAGTAA+GGG | - | chr6_2:25771916-25771935 | None:intergenic | 35.0% | |
| TTATGAGCACTTGAGAAGTA+AGG | - | chr6_2:25771917-25771936 | None:intergenic | 35.0% | |
| ! | ATTATCAATATCGGTTGTCC+CGG | + | chr6_2:25772120-25772139 | Msa0913860:CDS | 35.0% |
| !! | AAAACATCAAGGGCATCAAT+AGG | - | chr6_2:25772213-25772232 | None:intergenic | 35.0% |
| GAAGAAACCTTTAATCCACA+AGG | - | chr6_2:25772243-25772262 | None:intergenic | 35.0% | |
| ! | TCCGAGTAAGGATTAATTTG+AGG | + | chr6_2:25772330-25772349 | Msa0913860:intron | 35.0% |
| CCCTCAAATTAATCCTTACT+CGG | - | chr6_2:25772334-25772353 | None:intergenic | 35.0% | |
| ! | CCGAGTAAGGATTAATTTGA+GGG | + | chr6_2:25772331-25772350 | Msa0913860:intron | 35.0% |
| ! | AGGGATGTATTGATACTTGT+AGG | + | chr6_2:25772350-25772369 | Msa0913860:intron | 35.0% |
| TCTAATGTAGAGGTTATACG+TGG | + | chr6_2:25772381-25772400 | Msa0913860:CDS | 35.0% | |
| ATGAACTAAATACGCCATCT+AGG | + | chr6_2:25772469-25772488 | Msa0913860:CDS | 35.0% | |
| TGAACTAAATACGCCATCTA+GGG | + | chr6_2:25772470-25772489 | Msa0913860:CDS | 35.0% | |
| !!! | GTTTTTTCTATGTTTCCTGC+TGG | + | chr6_2:25772596-25772615 | Msa0913860:intron | 35.0% |
| TTTAAAAGCCGCTCTGTTTA+GGG | - | chr6_2:25772720-25772739 | None:intergenic | 35.0% | |
| !! | TTTTAAAAGCCGCTCTGTTT+AGG | - | chr6_2:25772721-25772740 | None:intergenic | 35.0% |
| !!! | ACGAACAATTCTTGTTTTGC+AGG | + | chr6_2:25773277-25773296 | Msa0913860:intron | 35.0% |
| ! | TGTTTTGCAGGTAATTCTGA+TGG | + | chr6_2:25773289-25773308 | Msa0913860:intron | 35.0% |
| ! | GTTTTGCAGGTAATTCTGAT+GGG | + | chr6_2:25773290-25773309 | Msa0913860:intron | 35.0% |
| ! | TGGTTTCTTGTTACTTCTAC+AGG | + | chr6_2:25773530-25773549 | Msa0913860:intron | 35.0% |
| ! | GTTAAAGTTCGTGCATTTTG+AGG | + | chr6_2:25773658-25773677 | Msa0913860:intron | 35.0% |
| AACAATAAGAAAACGGGAAG+AGG | - | chr6_2:25773737-25773756 | None:intergenic | 35.0% | |
| TTCTATTGCCAGAACCAAAT+CGG | + | chr6_2:25773990-25774009 | Msa0913860:CDS | 35.0% | |
| AAGTGTAACAAAAGCCGATT+TGG | - | chr6_2:25774007-25774026 | None:intergenic | 35.0% | |
| ! | GCATATTAGCACTAGGATTT+TGG | - | chr6_2:25774062-25774081 | None:intergenic | 35.0% |
| TGATCATAACCTCATCAAGA+AGG | + | chr6_2:25774101-25774120 | Msa0913860:CDS | 35.0% | |
| ! | ATATGATCCGAGTTTGAGAT+TGG | + | chr6_2:25774318-25774337 | Msa0913860:CDS | 35.0% |
| GGAATGGTATAATGAGCATA+TGG | + | chr6_2:25774368-25774387 | Msa0913860:CDS | 35.0% | |
| ATCACTATTAGCTGAATGCT+TGG | - | chr6_2:25774885-25774904 | None:intergenic | 35.0% | |
| ! | TTCTGACCCAAGTATTTTCA+AGG | + | chr6_2:25775018-25775037 | Msa0913860:CDS | 35.0% |
| !!! | TTGGAGTTGATGATTTTGTG+TGG | + | chr6_2:25775095-25775114 | Msa0913860:intron | 35.0% |
| ! | TGTCGTGCAATTTTATGCAA+AGG | + | chr6_2:25775222-25775241 | Msa0913860:CDS | 35.0% |
| TAGTGCTATCAAAACCAAGT+CGG | - | chr6_2:25775344-25775363 | None:intergenic | 35.0% | |
| TAGCACTACCACAAGAATTG+AGG | - | chr6_2:25771884-25771903 | None:intergenic | 40.0% | |
| GTGCTCATAACTACTCTTGA+TGG | + | chr6_2:25771927-25771946 | Msa0913860:CDS | 40.0% | |
| CCAATGCATTTGAGTGTGAA+GGG | - | chr6_2:25772088-25772107 | None:intergenic | 40.0% | |
| ! | TTATCAATATCGGTTGTCCC+GGG | + | chr6_2:25772121-25772140 | Msa0913860:CDS | 40.0% |
| TCAAAGAGTCCTTGGATTTG+AGG | + | chr6_2:25772182-25772201 | Msa0913860:CDS | 40.0% | |
| CAGATGAAAAGGATGTAGAG+TGG | - | chr6_2:25772270-25772289 | None:intergenic | 40.0% | |
| !! | TTTGCTATTCTCTCCGAGTA+AGG | + | chr6_2:25772318-25772337 | Msa0913860:intron | 40.0% |
| !! | AATATTAGAGTATTGGGGGG+AGG | + | chr6_2:25772426-25772445 | Msa0913860:CDS | 40.0% |
| ! | GGCGTATTTAGTTCATCAAC+CGG | - | chr6_2:25772465-25772484 | None:intergenic | 40.0% |
| GAACTAAATACGCCATCTAG+GGG | + | chr6_2:25772471-25772490 | Msa0913860:CDS | 40.0% | |
| ! | TTGTACCTTTTTCCCCTAGA+TGG | - | chr6_2:25772486-25772505 | None:intergenic | 40.0% |
| GTCAGTCTGGATAATCCAAT+TGG | - | chr6_2:25772519-25772538 | None:intergenic | 40.0% | |
| GAGAACCTAATAAGGATCAC+AGG | + | chr6_2:25772688-25772707 | Msa0913860:intron | 40.0% | |
| ACTTGCCTGTGATCCTTATT+AGG | - | chr6_2:25772696-25772715 | None:intergenic | 40.0% | |
| ATCATTGTGGCAGACGAAAA+AGG | - | chr6_2:25772749-25772768 | None:intergenic | 40.0% | |
| TCATCTCTGTCTATGCTTGA+AGG | + | chr6_2:25772818-25772837 | Msa0913860:intron | 40.0% | |
| TGTTAACCAATTCCACGTGA+AGG | + | chr6_2:25773087-25773106 | Msa0913860:intron | 40.0% | |
| !! | AGTGGACTGGTTGTTTGTTT+AGG | + | chr6_2:25773340-25773359 | Msa0913860:CDS | 40.0% |
| AGGTAGAATGAGGTGGAAAT+GGG | - | chr6_2:25773717-25773736 | None:intergenic | 40.0% | |
| AACCTAAAACACAGATGGTG+AGG | - | chr6_2:25773893-25773912 | None:intergenic | 40.0% | |
| !! | TCACCATCTGTGTTTTAGGT+TGG | + | chr6_2:25773892-25773911 | Msa0913860:intron | 40.0% |
| ! | TAGGTTGGAGCAGATGAATT+TGG | + | chr6_2:25773907-25773926 | Msa0913860:intron | 40.0% |
| AGGTTGGAGCAGATGAATTT+GGG | + | chr6_2:25773908-25773927 | Msa0913860:intron | 40.0% | |
| ATGTTGATACATCTGGCATG+CGG | + | chr6_2:25773962-25773981 | Msa0913860:CDS | 40.0% | |
| !! | AACAAAAGCCGATTTGGTTC+TGG | - | chr6_2:25774001-25774020 | None:intergenic | 40.0% |
| TCCTAGTGCTAATATGCTTC+TGG | + | chr6_2:25774065-25774084 | Msa0913860:CDS | 40.0% | |
| ! | TCCAGAAGCATATTAGCACT+AGG | - | chr6_2:25774069-25774088 | None:intergenic | 40.0% |
| AATGTGGCCATAAAGACCTA+TGG | + | chr6_2:25774153-25774172 | Msa0913860:intron | 40.0% | |
| CCAAACTCATGGAACCATAA+TGG | - | chr6_2:25774228-25774247 | None:intergenic | 40.0% | |
| CCATTATGGTTCCATGAGTT+TGG | + | chr6_2:25774225-25774244 | Msa0913860:CDS | 40.0% | |
| AGAGTCTTCAGCAATTCTCA+AGG | - | chr6_2:25774284-25774303 | None:intergenic | 40.0% | |
| CATAGTGCCAATCTCAAACT+CGG | - | chr6_2:25774328-25774347 | None:intergenic | 40.0% | |
| GAATCTAGCCCATGTCATAA+AGG | + | chr6_2:25774390-25774409 | Msa0913860:CDS | 40.0% | |
| AATTGTTACTAAAGGGTGGG+AGG | + | chr6_2:25774639-25774658 | Msa0913860:CDS | 40.0% | |
| ATTGTTACTAAAGGGTGGGA+GGG | + | chr6_2:25774640-25774659 | Msa0913860:CDS | 40.0% | |
| TTGCTCTTTACTCTCATGAG+TGG | + | chr6_2:25774759-25774778 | Msa0913860:intron | 40.0% | |
| CAGGTTGTAAAACTTGAGCA+AGG | + | chr6_2:25774846-25774865 | Msa0913860:intron | 40.0% | |
| ! | CTGGTGATGCATTTGTTAGT+GGG | + | chr6_2:25774978-25774997 | Msa0913860:CDS | 40.0% |
| !!! | AGTTGATGATTTTGTGTGGC+AGG | + | chr6_2:25775099-25775118 | Msa0913860:intron | 40.0% |
| TAGCGAAATATAACGCGTCT+TGG | - | chr6_2:25775138-25775157 | None:intergenic | 40.0% | |
| ! | GCATCTTTTGTAGGTAATGC+AGG | - | chr6_2:25775202-25775221 | None:intergenic | 40.0% |
| ACAGCTCGCATAATCAAAAG+GGG | - | chr6_2:25775429-25775448 | None:intergenic | 40.0% | |
| GACAGCTCGCATAATCAAAA+GGG | - | chr6_2:25775430-25775449 | None:intergenic | 40.0% | |
| TGACAGCTCGCATAATCAAA+AGG | - | chr6_2:25775431-25775450 | None:intergenic | 40.0% | |
| GCCACAAGTTCCCTTGAAAT+CGG | + | chr6_2:25771680-25771699 | Msa0913860:CDS | 45.0% | |
| TCCGATTTCAAGGGAACTTG+TGG | - | chr6_2:25771684-25771703 | None:intergenic | 45.0% | |
| AATCTCTGGCGATGACTTGA+CGG | + | chr6_2:25771713-25771732 | Msa0913860:intron | 45.0% | |
| !!! | TCCCATCACCTTTTGGAACT+CGG | + | chr6_2:25771741-25771760 | Msa0913860:intron | 45.0% |
| AACCAATCCCGAGTTCCAAA+AGG | - | chr6_2:25771752-25771771 | None:intergenic | 45.0% | |
| AGCACTTGAGAAGTAAGGGT+AGG | - | chr6_2:25771912-25771931 | None:intergenic | 45.0% | |
| GAACCTACCTGCAATACGAA+GGG | - | chr6_2:25771954-25771973 | None:intergenic | 45.0% | |
| CATTTGAGTGTGAAGGGTTC+AGG | - | chr6_2:25772082-25772101 | None:intergenic | 45.0% | |
| CCCTTCACACTCAAATGCAT+TGG | + | chr6_2:25772085-25772104 | Msa0913860:intron | 45.0% | |
| GCCAATGCATTTGAGTGTGA+AGG | - | chr6_2:25772089-25772108 | None:intergenic | 45.0% | |
| ! | TCACACTCAAATGCATTGGC+AGG | + | chr6_2:25772089-25772108 | Msa0913860:intron | 45.0% |
| !!! | CTGCAGTTGTTTTTGACCGA+CGG | + | chr6_2:25772156-25772175 | Msa0913860:CDS | 45.0% |
| !! | AGGCGCTGGAAAAACATCAA+GGG | - | chr6_2:25772223-25772242 | None:intergenic | 45.0% |
| !! | AAGGCGCTGGAAAAACATCA+AGG | - | chr6_2:25772224-25772243 | None:intergenic | 45.0% |
| ATACGCCATCTAGGGGAAAA+AGG | + | chr6_2:25772478-25772497 | Msa0913860:CDS | 45.0% | |
| ATCCAGACTGACACCAACAA+TGG | + | chr6_2:25772527-25772546 | Msa0913860:intron | 45.0% | |
| !! | TTCCATTGTTGGTGTCAGTC+TGG | - | chr6_2:25772532-25772551 | None:intergenic | 45.0% |
| !! | AGAGTTGATGATCCCGTTCA+CGG | + | chr6_2:25772627-25772646 | Msa0913860:intron | 45.0% |
| TGATGACCTTCACGTGGAAT+TGG | - | chr6_2:25773096-25773115 | None:intergenic | 45.0% | |
| ATTCCACGTGAAGGTCATCA+TGG | + | chr6_2:25773096-25773115 | Msa0913860:intron | 45.0% | |
| TTACTTCTCTGCAGTGCTAC+CGG | + | chr6_2:25773233-25773252 | Msa0913860:intron | 45.0% | |
| !! | TCTGATGGGCTCATAACAGA+AGG | + | chr6_2:25773304-25773323 | Msa0913860:CDS | 45.0% |
| GCAGTTGGCATCTCTAAGTT+GGG | + | chr6_2:25773445-25773464 | Msa0913860:CDS | 45.0% | |
| CAGTTGGCATCTCTAAGTTG+GGG | + | chr6_2:25773446-25773465 | Msa0913860:CDS | 45.0% | |
| ! | AGTTGGCATCTCTAAGTTGG+GGG | + | chr6_2:25773447-25773466 | Msa0913860:CDS | 45.0% |
| GAGGTAGAATGAGGTGGAAA+TGG | - | chr6_2:25773718-25773737 | None:intergenic | 45.0% | |
| AAACGGGAAGAGGTAGAATG+AGG | - | chr6_2:25773727-25773746 | None:intergenic | 45.0% | |
| ! | CTCCTCACCATCTGTGTTTT+AGG | + | chr6_2:25773888-25773907 | Msa0913860:intron | 45.0% |
| GCTCCAACCTAAAACACAGA+TGG | - | chr6_2:25773898-25773917 | None:intergenic | 45.0% | |
| ! | TAATGGGCACCTTCTTGATG+AGG | - | chr6_2:25774113-25774132 | None:intergenic | 45.0% |
| TGGCTCATCAACCAAACTCA+TGG | - | chr6_2:25774239-25774258 | None:intergenic | 45.0% | |
| ! | CGAGTTTGAGATTGGCACTA+TGG | + | chr6_2:25774326-25774345 | Msa0913860:CDS | 45.0% |
| GGGTCGTAGATATTACACCA+AGG | + | chr6_2:25774660-25774679 | Msa0913860:CDS | 45.0% | |
| TGACTTTGGCAAGCTTACCT+TGG | - | chr6_2:25774680-25774699 | None:intergenic | 45.0% | |
| !! | TCATGAGTGGACTGAAACGT+TGG | + | chr6_2:25774772-25774791 | Msa0913860:intron | 45.0% |
| GTTGAACCTGTTGACACAAC+TGG | + | chr6_2:25774953-25774972 | Msa0913860:CDS | 45.0% | |
| ! | GCTGGTGATGCATTTGTTAG+TGG | + | chr6_2:25774977-25774996 | Msa0913860:CDS | 45.0% |
| ! | TGCACGACAGCATCTTTTGT+AGG | - | chr6_2:25775211-25775230 | None:intergenic | 45.0% |
| AGTGATTTCACCTTCCGACT+TGG | + | chr6_2:25775327-25775346 | Msa0913860:three_prime_UTR | 45.0% | |
| GCTATCAAAACCAAGTCGGA+AGG | - | chr6_2:25775340-25775359 | None:intergenic | 45.0% | |
| AGTCCTGTACTGCAACATTC+AGG | + | chr6_2:25775372-25775391 | Msa0913860:three_prime_UTR | 45.0% | |
| TAGCCTGAATGTTGCAGTAC+AGG | - | chr6_2:25775378-25775397 | None:intergenic | 45.0% | |
| !!! | AATTTTTATTATTTTTTTAC+CGG | - | chr6_2:25773255-25773274 | None:intergenic | 5.0% |
| TGTGCTACAGAGATTCCGAC+TGG | - | chr6_2:25771597-25771616 | None:intergenic | 50.0% | |
| TTGTGGCTGAGGCTCAACTA+CGG | - | chr6_2:25771667-25771686 | None:intergenic | 50.0% | |
| TTCAAGGGAACTTGTGGCTG+AGG | - | chr6_2:25771678-25771697 | None:intergenic | 50.0% | |
| ! | TCGACGGGTTCCGATTTCAA+GGG | - | chr6_2:25771693-25771712 | None:intergenic | 50.0% |
| ! | TTCGACGGGTTCCGATTTCA+AGG | - | chr6_2:25771694-25771713 | None:intergenic | 50.0% |
| TCATCGCCAGAGATTTCGAC+GGG | - | chr6_2:25771708-25771727 | None:intergenic | 50.0% | |
| GTCATCGCCAGAGATTTCGA+CGG | - | chr6_2:25771709-25771728 | None:intergenic | 50.0% | |
| ! | GGACTTCTCCCATCACCTTT+TGG | + | chr6_2:25771734-25771753 | Msa0913860:intron | 50.0% |
| CCCGAGTTCCAAAAGGTGAT+GGG | - | chr6_2:25771745-25771764 | None:intergenic | 50.0% | |
| !!! | CCCATCACCTTTTGGAACTC+GGG | + | chr6_2:25771742-25771761 | Msa0913860:intron | 50.0% |
| TCCCGAGTTCCAAAAGGTGA+TGG | - | chr6_2:25771746-25771765 | None:intergenic | 50.0% | |
| !!! | CACCTTTTGGAACTCGGGAT+TGG | + | chr6_2:25771747-25771766 | Msa0913860:intron | 50.0% |
| GCTGATTGTCTTCGCCAACT+TGG | + | chr6_2:25771789-25771808 | Msa0913860:CDS | 50.0% | |
| TGATGGTCCCTTCGTATTGC+AGG | + | chr6_2:25771944-25771963 | Msa0913860:CDS | 50.0% | |
| GGAACCTACCTGCAATACGA+AGG | - | chr6_2:25771955-25771974 | None:intergenic | 50.0% | |
| ! | CACTCAAATGCATTGGCAGG+TGG | + | chr6_2:25772092-25772111 | Msa0913860:intron | 50.0% |
| CGTCGGTCAAAAACAACTGC+AGG | - | chr6_2:25772158-25772177 | None:intergenic | 50.0% | |
| ! | AAGGACTCTTTGAGCACCGT+CGG | - | chr6_2:25772175-25772194 | None:intergenic | 50.0% |
| TAGGCGCATCCTCAAATCCA+AGG | - | chr6_2:25772194-25772213 | None:intergenic | 50.0% | |
| ! | GATGTTTTTCCAGCGCCTTG+TGG | + | chr6_2:25772225-25772244 | Msa0913860:CDS | 50.0% |
| ! | TCCAGCGCCTTGTGGATTAA+AGG | + | chr6_2:25772233-25772252 | Msa0913860:CDS | 50.0% |
| ACCTTTAATCCACAAGGCGC+TGG | - | chr6_2:25772237-25772256 | None:intergenic | 50.0% | |
| CAACTCTACTTGAAGCCAGC+AGG | - | chr6_2:25772614-25772633 | None:intergenic | 50.0% | |
| TGGCTCAACGTTGCACATAG+CGG | + | chr6_2:25772650-25772669 | Msa0913860:intron | 50.0% | |
| GGCAAGTACCCTAAACAGAG+CGG | + | chr6_2:25772709-25772728 | Msa0913860:intron | 50.0% | |
| !! | CTTGAAGGCGTTTGTTGCGA+AGG | + | chr6_2:25772833-25772852 | Msa0913860:intron | 50.0% |
| CAACCATGATGACCTTCACG+TGG | - | chr6_2:25773102-25773121 | None:intergenic | 50.0% | |
| CACGTGAAGGTCATCATGGT+TGG | + | chr6_2:25773100-25773119 | Msa0913860:intron | 50.0% | |
| GAAGGCTGCAACGAAACAAG+TGG | + | chr6_2:25773322-25773341 | Msa0913860:CDS | 50.0% | |
| CTGCAACGAAACAAGTGGAC+TGG | + | chr6_2:25773327-25773346 | Msa0913860:CDS | 50.0% | |
| AGAGACAAACAACGCACTGG+TGG | - | chr6_2:25773388-25773407 | None:intergenic | 50.0% | |
| GCAAGAGACAAACAACGCAC+TGG | - | chr6_2:25773391-25773410 | None:intergenic | 50.0% | |
| TCTCTTGCCAAATCGTCTCC+TGG | + | chr6_2:25773403-25773422 | Msa0913860:CDS | 50.0% | |
| ATGCCAACTGCCACATTTGC+AGG | - | chr6_2:25773436-25773455 | None:intergenic | 50.0% | |
| GGCAGTTGGCATCTCTAAGT+TGG | + | chr6_2:25773444-25773463 | Msa0913860:CDS | 50.0% | |
| ! | GTTGGCATCTCTAAGTTGGG+GGG | + | chr6_2:25773448-25773467 | Msa0913860:CDS | 50.0% |
| !! | GGTTGATGAGCCATGCAAGT+TGG | + | chr6_2:25774246-25774265 | Msa0913860:CDS | 50.0% |
| GCAAGATGAGCCAACTTGCA+TGG | - | chr6_2:25774259-25774278 | None:intergenic | 50.0% | |
| TATACCATTCCGAGCAGCCT+CGG | - | chr6_2:25774359-25774378 | None:intergenic | 50.0% | |
| GACACTCAACGACGAATAGC+AGG | + | chr6_2:25774827-25774846 | Msa0913860:intron | 50.0% | |
| ! | CTTGAGCAAGGTTTGCTTCG+AGG | + | chr6_2:25774858-25774877 | Msa0913860:intron | 50.0% |
| CAGTCGGAATCGGAACCAGT+CGG | + | chr6_2:25771579-25771598 | Msa0913860:CDS | 55.0% | |
| AGGCTGATCTACTACGGTGG+CGG | - | chr6_2:25771641-25771660 | None:intergenic | 55.0% | |
| CTGAGGCTGATCTACTACGG+TGG | - | chr6_2:25771644-25771663 | None:intergenic | 55.0% | |
| CGGCTGAGGCTGATCTACTA+CGG | - | chr6_2:25771647-25771666 | None:intergenic | 55.0% | |
| TCGGAACCCGTCGAAATCTC+TGG | + | chr6_2:25771699-25771718 | Msa0913860:intron | 55.0% | |
| GGTCCCTTCGTATTGCAGGT+AGG | + | chr6_2:25771948-25771967 | Msa0913860:intron | 55.0% | |
| TCGGTTGTCCCGGGTTTCAA+AGG | + | chr6_2:25772130-25772149 | Msa0913860:CDS | 55.0% | |
| GACGGTGCTCAAAGAGTCCT+TGG | + | chr6_2:25772174-25772193 | Msa0913860:CDS | 55.0% | |
| !! | GGGAGGATTAGTTGAGCAGC+CGG | + | chr6_2:25772443-25772462 | Msa0913860:CDS | 55.0% |
| !! | GTTGATGATCCCGTTCACGG+TGG | + | chr6_2:25772630-25772649 | Msa0913860:intron | 55.0% |
| AACGTTGAGCCACCGTGAAC+GGG | - | chr6_2:25772642-25772661 | None:intergenic | 55.0% | |
| CAACGTTGAGCCACCGTGAA+CGG | - | chr6_2:25772643-25772662 | None:intergenic | 55.0% | |
| GGCTCAACGTTGCACATAGC+GGG | + | chr6_2:25772651-25772670 | Msa0913860:intron | 55.0% | |
| CTTGCCAAATCGTCTCCTGG+TGG | + | chr6_2:25773406-25773425 | Msa0913860:CDS | 55.0% | |
| AGCACCACCAGGAGACGATT+TGG | - | chr6_2:25773413-25773432 | None:intergenic | 55.0% | |
| !! | ACATTTGCAGGAGCACCACC+AGG | - | chr6_2:25773424-25773443 | None:intergenic | 55.0% |
| ! | TGGTGGTGCTCCTGCAAATG+TGG | + | chr6_2:25773423-25773442 | Msa0913860:CDS | 55.0% |
| GCTCCTGCAAATGTGGCAGT+TGG | + | chr6_2:25773430-25773449 | Msa0913860:CDS | 55.0% | |
| CGGGAAGAGGTAGAATGAGG+TGG | - | chr6_2:25773724-25773743 | None:intergenic | 55.0% | |
| CCAGCACCAGTTGTGTCAAC+AGG | - | chr6_2:25774962-25774981 | None:intergenic | 55.0% | |
| CCTGTTGACACAACTGGTGC+TGG | + | chr6_2:25774959-25774978 | Msa0913860:CDS | 55.0% | |
| ATGTGCCGCGATCACAGTGA+CGG | + | chr6_2:25775162-25775181 | Msa0913860:CDS | 55.0% | |
| TCTCTCCGTCACTGTGATCG+CGG | - | chr6_2:25775170-25775189 | None:intergenic | 55.0% | |
| ! | CGATCACAGTGACGGAGAGA+GGG | + | chr6_2:25775170-25775189 | Msa0913860:CDS | 55.0% |
| ! | GATCACAGTGACGGAGAGAG+GGG | + | chr6_2:25775171-25775190 | Msa0913860:CDS | 55.0% |
| ! | CTGATCTACTACGGTGGCGG+CGG | - | chr6_2:25771638-25771657 | None:intergenic | 60.0% |
| CTGAGGCTCAACTACGGCTG+AGG | - | chr6_2:25771661-25771680 | None:intergenic | 60.0% | |
| !! | TGCAGGCGCCTTTGAAACCC+GGG | - | chr6_2:25772141-25772160 | None:intergenic | 60.0% |
| !! | CTGCAGGCGCCTTTGAAACC+CGG | - | chr6_2:25772142-25772161 | None:intergenic | 60.0% |
| ! | GCGATCACAGTGACGGAGAG+AGG | + | chr6_2:25775169-25775188 | Msa0913860:CDS | 60.0% |
| ! | ATCTACTACGGTGGCGGCGG+CGG | - | chr6_2:25771635-25771654 | None:intergenic | 65.0% |
| GGCACTATGGCCATCAGCCG+AGG | + | chr6_2:25774339-25774358 | Msa0913860:CDS | 65.0% | |
| TTCCGAGCAGCCTCGGCTGA+TGG | - | chr6_2:25774352-25774371 | None:intergenic | 65.0% | |
| TCAGCCGAGGCTGCTCGGAA+TGG | + | chr6_2:25774352-25774371 | Msa0913860:CDS | 65.0% | |
| GGCCATCAGCCGAGGCTGCT+CGG | + | chr6_2:25774347-25774366 | Msa0913860:CDS | 70.0% | |
| ! | TACTACGGTGGCGGCGGCGG+CGG | - | chr6_2:25771632-25771651 | None:intergenic | 75.0% |
| !! | TACGGTGGCGGCGGCGGCGG+CGG | - | chr6_2:25771629-25771648 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 25771561 | 25775466 | 25771561 | ID=Msa0913860;Name=Msa0913860 |
| chr6_2 | mRNA | 25771561 | 25775466 | 25771561 | ID=Msa0913860-mRNA-1;Parent=Msa0913860;Name=Msa0913860-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.54|0.5|1|0.54|0.83|12|211|536 |
| chr6_2 | exon | 25771561 | 25771707 | 25771561 | ID=Msa0913860-mRNA-1:exon:4946;Parent=Msa0913860-mRNA-1 |
| chr6_2 | exon | 25771786 | 25771965 | 25771786 | ID=Msa0913860-mRNA-1:exon:4947;Parent=Msa0913860-mRNA-1 |
| chr6_2 | exon | 25772008 | 25772013 | 25772008 | ID=Msa0913860-mRNA-1:exon:4948;Parent=Msa0913860-mRNA-1 |
| chr6_2 | exon | 25772111 | 25772254 | 25772111 | ID=Msa0913860-mRNA-1:exon:4949;Parent=Msa0913860-mRNA-1 |
| chr6_2 | exon | 25772372 | 25772499 | 25772372 | ID=Msa0913860-mRNA-1:exon:4950;Parent=Msa0913860-mRNA-1 |
| chr6_2 | exon | 25773247 | 25773254 | 25773247 | ID=Msa0913860-mRNA-1:exon:4951;Parent=Msa0913860-mRNA-1 |
| chr6_2 | exon | 25773299 | 25773492 | 25773299 | ID=Msa0913860-mRNA-1:exon:4952;Parent=Msa0913860-mRNA-1 |
| chr6_2 | exon | 25773910 | 25774122 | 25773910 | ID=Msa0913860-mRNA-1:exon:4953;Parent=Msa0913860-mRNA-1 |
| chr6_2 | exon | 25774214 | 25774411 | 25774214 | ID=Msa0913860-mRNA-1:exon:4954;Parent=Msa0913860-mRNA-1 |
| chr6_2 | exon | 25774541 | 25774681 | 25774541 | ID=Msa0913860-mRNA-1:exon:4955;Parent=Msa0913860-mRNA-1 |
| chr6_2 | exon | 25774923 | 25775039 | 25774923 | ID=Msa0913860-mRNA-1:exon:4956;Parent=Msa0913860-mRNA-1 |
| chr6_2 | exon | 25775121 | 25775466 | 25775121 | ID=Msa0913860-mRNA-1:exon:4957;Parent=Msa0913860-mRNA-1 |
| chr6_2 | CDS | 25771561 | 25771707 | 25771561 | ID=Msa0913860-mRNA-1:cds;Parent=Msa0913860-mRNA-1 |
| chr6_2 | CDS | 25771786 | 25771965 | 25771786 | ID=Msa0913860-mRNA-1:cds;Parent=Msa0913860-mRNA-1 |
| chr6_2 | CDS | 25772008 | 25772013 | 25772008 | ID=Msa0913860-mRNA-1:cds;Parent=Msa0913860-mRNA-1 |
| chr6_2 | CDS | 25772111 | 25772254 | 25772111 | ID=Msa0913860-mRNA-1:cds;Parent=Msa0913860-mRNA-1 |
| chr6_2 | CDS | 25772372 | 25772499 | 25772372 | ID=Msa0913860-mRNA-1:cds;Parent=Msa0913860-mRNA-1 |
| chr6_2 | CDS | 25773247 | 25773254 | 25773247 | ID=Msa0913860-mRNA-1:cds;Parent=Msa0913860-mRNA-1 |
| chr6_2 | CDS | 25773299 | 25773492 | 25773299 | ID=Msa0913860-mRNA-1:cds;Parent=Msa0913860-mRNA-1 |
| chr6_2 | CDS | 25773910 | 25774122 | 25773910 | ID=Msa0913860-mRNA-1:cds;Parent=Msa0913860-mRNA-1 |
| chr6_2 | CDS | 25774214 | 25774411 | 25774214 | ID=Msa0913860-mRNA-1:cds;Parent=Msa0913860-mRNA-1 |
| chr6_2 | CDS | 25774541 | 25774681 | 25774541 | ID=Msa0913860-mRNA-1:cds;Parent=Msa0913860-mRNA-1 |
| chr6_2 | CDS | 25774923 | 25775039 | 25774923 | ID=Msa0913860-mRNA-1:cds;Parent=Msa0913860-mRNA-1 |
| chr6_2 | CDS | 25775121 | 25775255 | 25775121 | ID=Msa0913860-mRNA-1:cds;Parent=Msa0913860-mRNA-1 |
| chr6_2 | three_prime_UTR | 25775256 | 25775466 | 25775256 | ID=Msa0913860-mRNA-1:three_prime_utr;Parent=Msa0913860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
