Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0888120 | GAU14052.1 | 78.571 | 70 | 15 | 0 | 57 | 126 | 297 | 366 | 4.24e-30 | 121 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0888120 | sp|Q9SIC9|PP178_ARATH | 55.072 | 69 | 31 | 0 | 57 | 125 | 820 | 888 | 5.10e-19 | 84.7 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0888120 | A0A072TY18 | 74.286 | 70 | 18 | 0 | 57 | 126 | 155 | 224 | 2.26e-29 | 115 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0737340 | Msa0888120 | 0.808170 | 3.531914e-50 | -8.615850e-47 |
Msa0248130 | Msa0888120 | 0.822500 | 2.291114e-53 | -8.615850e-47 |
Msa0888120 | Msa0942260 | 0.828657 | 7.958313e-55 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0888120 | MtrunA17_Chr7g0220481 | 74.286 | 70 | 18 | 0 | 57 | 126 | 770 | 839 | 3.02e-31 | 116 |
Msa0888120 | MtrunA17_Chr7g0220501 | 68.571 | 70 | 22 | 0 | 57 | 126 | 805 | 874 | 3.02e-28 | 107 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0888120 | AT2G31400.1 | 55.072 | 69 | 31 | 0 | 57 | 125 | 820 | 888 | 5.18e-20 | 84.7 |
Find 38 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAGAGTTGCTGATGGAAATT+TGG | 0.155213 | 6_1:-52204573 | Msa0888120:CDS |
GCTTCATAGTCGAGTATCTT+TGG | 0.287306 | 6_1:-52206345 | Msa0888120:CDS |
ATTAGTATCTACTGGAGATT+TGG | 0.327482 | 6_1:-52204546 | Msa0888120:CDS |
CTCAATCACAAAAGATGAAT+TGG | 0.335631 | 6_1:+52206460 | None:intergenic |
CTGGAGATTTGGTGGCTACT+TGG | 0.335899 | 6_1:-52204535 | Msa0888120:CDS |
GGGTAATGGAACTTTGAAAA+AGG | 0.361807 | 6_1:-52204633 | Msa0888120:CDS |
CTGTGCATGAAAGAGGAAAA+AGG | 0.368625 | 6_1:+52206278 | None:intergenic |
AGAGTTGCTGATGGAAATTT+GGG | 0.409005 | 6_1:-52204572 | Msa0888120:CDS |
TTGGGAAGATTAGTATCTAC+TGG | 0.422023 | 6_1:-52204554 | Msa0888120:CDS |
TGAAGCACTCCTTGATAGAA+TGG | 0.451859 | 6_1:-52204606 | Msa0888120:CDS |
TTTCCATCAGCAACTCTAAA+GGG | 0.457588 | 6_1:+52204578 | None:intergenic |
ATTTCCATCAGCAACTCTAA+AGG | 0.473853 | 6_1:+52204577 | None:intergenic |
TTGAGAATGTGTGATGGTGG+AGG | 0.476292 | 6_1:+52206397 | None:intergenic |
CACAGCAAAGTGATGGGTAA+TGG | 0.478108 | 6_1:-52204647 | Msa0888120:CDS |
AACTCGACTATGAAGAGGAT+TGG | 0.495871 | 6_1:+52206486 | None:intergenic |
TGTGATGGTGGAGGGTGAGA+AGG | 0.501460 | 6_1:+52206406 | None:intergenic |
ACAAGCAAATTGTAAATGCC+AGG | 0.503434 | 6_1:+52204503 | None:intergenic |
AGTATCTACTGGAGATTTGG+TGG | 0.510899 | 6_1:-52204543 | Msa0888120:CDS |
ACGTTACCTGTGCATGAAAG+AGG | 0.516725 | 6_1:+52206271 | None:intergenic |
TCACACATTCTCAAAACGTC+GGG | 0.528238 | 6_1:-52206388 | Msa0888120:CDS |
TGGTGGAGGAATGCGATGGC+GGG | 0.532138 | 6_1:+52206516 | None:intergenic |
GGGTAAACACAGCAAAGTGA+TGG | 0.537436 | 6_1:-52204654 | Msa0888120:CDS |
GTGATGGTGGAGGGTGAGAA+GGG | 0.545862 | 6_1:+52206407 | None:intergenic |
GAAGCACTCCTTGATAGAAT+GGG | 0.550026 | 6_1:-52204605 | Msa0888120:CDS |
GCTACTTGGCTGAAACAACC+TGG | 0.552847 | 6_1:-52204521 | Msa0888120:CDS |
AGGGTGATCCCATTCTATCA+AGG | 0.558166 | 6_1:+52204597 | None:intergenic |
TTCGATCTGCAATGTGAAGT+CGG | 0.563487 | 6_1:+52206311 | None:intergenic |
TGAGAATGTGTGATGGTGGA+GGG | 0.564229 | 6_1:+52206398 | None:intergenic |
TCACCCTTTAGAGTTGCTGA+TGG | 0.571046 | 6_1:-52204581 | Msa0888120:CDS |
ATGGTGGAGGAATGCGATGG+CGG | 0.576547 | 6_1:+52206515 | None:intergenic |
GGTAAACACAGCAAAGTGAT+GGG | 0.612115 | 6_1:-52204653 | Msa0888120:CDS |
ATCACACATTCTCAAAACGT+CGG | 0.617037 | 6_1:-52206389 | Msa0888120:CDS |
GGATTGGAACTCGATGGTGG+AGG | 0.619848 | 6_1:+52206502 | None:intergenic |
ACTCGACTATGAAGCTCGAT+CGG | 0.625883 | 6_1:+52206353 | None:intergenic |
GGTGAAACTCGACTATGAAG+AGG | 0.628401 | 6_1:+52206481 | None:intergenic |
TGAAGAGGATTGGAACTCGA+TGG | 0.637611 | 6_1:+52206496 | None:intergenic |
AGAGGATTGGAACTCGATGG+TGG | 0.639295 | 6_1:+52206499 | None:intergenic |
TCGATGGTGGAGGAATGCGA+TGG | 0.716035 | 6_1:+52206512 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATTTAATTAGATTTGTTA+AGG | - | chr6_1:52205827-52205846 | Msa0888120:intron | 10.0% |
!!! | TTATTTAATTAGATTTGTTA+AGG | - | chr6_1:52205827-52205846 | Msa0888120:intron | 10.0% |
!! | ATTGATATTAATGAGAAATT+AGG | - | chr6_1:52205117-52205136 | Msa0888120:intron | 15.0% |
!! | TAATGTAGAATGAATTTAAA+TGG | - | chr6_1:52205306-52205325 | Msa0888120:intron | 15.0% |
!!! | ATAAGTAAATTACATGATTT+TGG | - | chr6_1:52205501-52205520 | Msa0888120:intron | 15.0% |
!!! | AAGTGTATTTTTGTTATAAT+TGG | - | chr6_1:52205728-52205747 | Msa0888120:intron | 15.0% |
!!! | AGTGTATTTTTGTTATAATT+GGG | - | chr6_1:52205729-52205748 | Msa0888120:intron | 15.0% |
!! | AATAAATTAATTAGTACACT+AGG | - | chr6_1:52205752-52205771 | Msa0888120:intron | 15.0% |
!! | ATAAATTAATTAGTACACTA+GGG | - | chr6_1:52205753-52205772 | Msa0888120:intron | 15.0% |
!! | ATTGATATTAATGAGAAATT+AGG | - | chr6_1:52205117-52205136 | Msa0888120:intron | 15.0% |
!! | TAATGTAGAATGAATTTAAA+TGG | - | chr6_1:52205306-52205325 | Msa0888120:intron | 15.0% |
!!! | ATAAGTAAATTACATGATTT+TGG | - | chr6_1:52205501-52205520 | Msa0888120:intron | 15.0% |
!!! | AAGTGTATTTTTGTTATAAT+TGG | - | chr6_1:52205728-52205747 | Msa0888120:intron | 15.0% |
!!! | AGTGTATTTTTGTTATAATT+GGG | - | chr6_1:52205729-52205748 | Msa0888120:intron | 15.0% |
!! | AATAAATTAATTAGTACACT+AGG | - | chr6_1:52205752-52205771 | Msa0888120:intron | 15.0% |
!! | ATAAATTAATTAGTACACTA+GGG | - | chr6_1:52205753-52205772 | Msa0888120:intron | 15.0% |
!!! | TTAGAGATCCTAATATTTTA+TGG | - | chr6_1:52205093-52205112 | Msa0888120:intron | 20.0% |
!! | TATCAATGCCATAAAATATT+AGG | + | chr6_1:52205104-52205123 | None:intergenic | 20.0% |
!!! | ATTGATTTTGTGTTAATTAG+AGG | - | chr6_1:52205150-52205169 | Msa0888120:intron | 20.0% |
!!! | TTTAATTAGATTTGTTAAGG+AGG | - | chr6_1:52205830-52205849 | Msa0888120:intron | 20.0% |
!!! | TTAATTAGATTTGTTAAGGA+GGG | - | chr6_1:52205831-52205850 | Msa0888120:intron | 20.0% |
!!! | TTAGAGATCCTAATATTTTA+TGG | - | chr6_1:52205093-52205112 | Msa0888120:intron | 20.0% |
!! | TATCAATGCCATAAAATATT+AGG | + | chr6_1:52205104-52205123 | None:intergenic | 20.0% |
!!! | ATTGATTTTGTGTTAATTAG+AGG | - | chr6_1:52205150-52205169 | Msa0888120:intron | 20.0% |
!!! | TTTAATTAGATTTGTTAAGG+AGG | - | chr6_1:52205830-52205849 | Msa0888120:intron | 20.0% |
!!! | TTAATTAGATTTGTTAAGGA+GGG | - | chr6_1:52205831-52205850 | Msa0888120:intron | 20.0% |
! | TCTCTAAACACAAATTGAAA+AGG | + | chr6_1:52205080-52205099 | None:intergenic | 25.0% |
! | TGTAGAATGAATTTAAATGG+CGG | - | chr6_1:52205309-52205328 | Msa0888120:intron | 25.0% |
! | AACAATAAATCTTCACCTAT+AGG | + | chr6_1:52205642-52205661 | None:intergenic | 25.0% |
! | ATGTATCTTGAATTGAAGAA+AGG | - | chr6_1:52206098-52206117 | Msa0888120:intron | 25.0% |
!!! | TTGGTTTTTTAATTCAGACT+AGG | - | chr6_1:52206147-52206166 | Msa0888120:intron | 25.0% |
! | TCTCTAAACACAAATTGAAA+AGG | + | chr6_1:52205080-52205099 | None:intergenic | 25.0% |
! | TGTAGAATGAATTTAAATGG+CGG | - | chr6_1:52205309-52205328 | Msa0888120:intron | 25.0% |
! | AACAATAAATCTTCACCTAT+AGG | + | chr6_1:52205642-52205661 | None:intergenic | 25.0% |
! | ATGTATCTTGAATTGAAGAA+AGG | - | chr6_1:52206098-52206117 | Msa0888120:intron | 25.0% |
!!! | TTGGTTTTTTAATTCAGACT+AGG | - | chr6_1:52206147-52206166 | Msa0888120:intron | 25.0% |
CTCAATCACAAAAGATGAAT+TGG | + | chr6_1:52204543-52204562 | None:intergenic | 30.0% | |
!!! | TTGAGCTTTGAATTTTGCTA+AGG | - | chr6_1:52204848-52204867 | Msa0888120:intron | 30.0% |
CACAATGATAAAGTCAAGTT+TGG | + | chr6_1:52204986-52205005 | None:intergenic | 30.0% | |
AAATTTGACTCTCTAATCGT+GGG | - | chr6_1:52205040-52205059 | Msa0888120:intron | 30.0% | |
AACCATGCAAAAAATCTCAA+AGG | + | chr6_1:52205202-52205221 | None:intergenic | 30.0% | |
AGATATGAAACAATAGAGAC+TGG | + | chr6_1:52205545-52205564 | None:intergenic | 30.0% | |
! | CAAGGTAAATCGATATTTTC+AGG | + | chr6_1:52205601-52205620 | None:intergenic | 30.0% |
TAATTATCCAGAACAGAACA+AGG | + | chr6_1:52205619-52205638 | None:intergenic | 30.0% | |
! | TGTTCTGGATAATTACCTAT+AGG | - | chr6_1:52205624-52205643 | Msa0888120:intron | 30.0% |
TTAATTAGTACACTAGGGAA+TGG | - | chr6_1:52205758-52205777 | Msa0888120:intron | 30.0% | |
TTCTCAAAAATAACCAACTC+AGG | + | chr6_1:52205933-52205952 | None:intergenic | 30.0% | |
!! | TTTTGAGAAGAGAATGCATA+TGG | - | chr6_1:52205944-52205963 | Msa0888120:intron | 30.0% |
TATGGAGGTTTATGTTATTG+AGG | - | chr6_1:52205962-52205981 | Msa0888120:intron | 30.0% | |
ATGGAGGTTTATGTTATTGA+GGG | - | chr6_1:52205963-52205982 | Msa0888120:intron | 30.0% | |
! | GAGGTATTTATACAAGTTGA+TGG | - | chr6_1:52206017-52206036 | Msa0888120:intron | 30.0% |
TTCTTGAGAAGAGGAAATTA+GGG | - | chr6_1:52206040-52206059 | Msa0888120:intron | 30.0% | |
TAAAAAACCAACAAACCGTT+AGG | + | chr6_1:52206138-52206157 | None:intergenic | 30.0% | |
AGTGATCTTTAGTGTTTATC+CGG | - | chr6_1:52206171-52206190 | Msa0888120:intron | 30.0% | |
AATACTAAAGAAATCAGCCT+CGG | + | chr6_1:52206283-52206302 | None:intergenic | 30.0% | |
ATTAGTATCTACTGGAGATT+TGG | - | chr6_1:52206454-52206473 | Msa0888120:five_prime_UTR | 30.0% | |
CTCAATCACAAAAGATGAAT+TGG | + | chr6_1:52204543-52204562 | None:intergenic | 30.0% | |
!!! | TTGAGCTTTGAATTTTGCTA+AGG | - | chr6_1:52204848-52204867 | Msa0888120:intron | 30.0% |
CACAATGATAAAGTCAAGTT+TGG | + | chr6_1:52204986-52205005 | None:intergenic | 30.0% | |
AAATTTGACTCTCTAATCGT+GGG | - | chr6_1:52205040-52205059 | Msa0888120:intron | 30.0% | |
AACCATGCAAAAAATCTCAA+AGG | + | chr6_1:52205202-52205221 | None:intergenic | 30.0% | |
AGATATGAAACAATAGAGAC+TGG | + | chr6_1:52205545-52205564 | None:intergenic | 30.0% | |
! | CAAGGTAAATCGATATTTTC+AGG | + | chr6_1:52205601-52205620 | None:intergenic | 30.0% |
TAATTATCCAGAACAGAACA+AGG | + | chr6_1:52205619-52205638 | None:intergenic | 30.0% | |
! | TGTTCTGGATAATTACCTAT+AGG | - | chr6_1:52205624-52205643 | Msa0888120:intron | 30.0% |
TTAATTAGTACACTAGGGAA+TGG | - | chr6_1:52205758-52205777 | Msa0888120:intron | 30.0% | |
TTCTCAAAAATAACCAACTC+AGG | + | chr6_1:52205933-52205952 | None:intergenic | 30.0% | |
!! | TTTTGAGAAGAGAATGCATA+TGG | - | chr6_1:52205944-52205963 | Msa0888120:intron | 30.0% |
TATGGAGGTTTATGTTATTG+AGG | - | chr6_1:52205962-52205981 | Msa0888120:intron | 30.0% | |
ATGGAGGTTTATGTTATTGA+GGG | - | chr6_1:52205963-52205982 | Msa0888120:intron | 30.0% | |
! | GAGGTATTTATACAAGTTGA+TGG | - | chr6_1:52206017-52206036 | Msa0888120:intron | 30.0% |
TTCTTGAGAAGAGGAAATTA+GGG | - | chr6_1:52206040-52206059 | Msa0888120:intron | 30.0% | |
TAAAAAACCAACAAACCGTT+AGG | + | chr6_1:52206138-52206157 | None:intergenic | 30.0% | |
AGTGATCTTTAGTGTTTATC+CGG | - | chr6_1:52206171-52206190 | Msa0888120:intron | 30.0% | |
AATACTAAAGAAATCAGCCT+CGG | + | chr6_1:52206283-52206302 | None:intergenic | 30.0% | |
ATTAGTATCTACTGGAGATT+TGG | - | chr6_1:52206454-52206473 | Msa0888120:five_prime_UTR | 30.0% | |
AAAAACGGTGTGACATTTGT+CGG | + | chr6_1:52204571-52204590 | None:intergenic | 35.0% | |
ATCACACATTCTCAAAACGT+CGG | - | chr6_1:52204611-52204630 | Msa0888120:CDS | 35.0% | |
GAAAGAGGAAAAAGGATTTG+TGG | + | chr6_1:52204717-52204736 | None:intergenic | 35.0% | |
GCGTAGAAAATGCTAAACAA+AGG | + | chr6_1:52204768-52204787 | None:intergenic | 35.0% | |
TCAATCACAATGAACAAGCA+TGG | + | chr6_1:52204832-52204851 | None:intergenic | 35.0% | |
CACAACAACAAAGTCAACTT+AGG | + | chr6_1:52204922-52204941 | None:intergenic | 35.0% | |
GAAATTTGACTCTCTAATCG+TGG | - | chr6_1:52205039-52205058 | Msa0888120:intron | 35.0% | |
!!! | TGCCTTTGAGATTTTTTGCA+TGG | - | chr6_1:52205197-52205216 | Msa0888120:intron | 35.0% |
AGTATCCTTAACCAATAGTG+AGG | - | chr6_1:52205237-52205256 | Msa0888120:intron | 35.0% | |
! | ATATGCCTCACTATTGGTTA+AGG | + | chr6_1:52205245-52205264 | None:intergenic | 35.0% |
AGAATGAATTTAAATGGCGG+CGG | - | chr6_1:52205312-52205331 | Msa0888120:intron | 35.0% | |
TGGAACCAAGAGATAAAAGT+AGG | - | chr6_1:52205457-52205476 | Msa0888120:intron | 35.0% | |
ACCAAGAGATAAAAGTAGGA+AGG | - | chr6_1:52205461-52205480 | Msa0888120:intron | 35.0% | |
!! | ACCTTCCTACTTTTATCTCT+TGG | + | chr6_1:52205465-52205484 | None:intergenic | 35.0% |
! | ATATTTTATGTGCGTGTGTG+TGG | - | chr6_1:52205680-52205699 | Msa0888120:intron | 35.0% |
TGTGTGTGGTAATTGAATTG+TGG | - | chr6_1:52205694-52205713 | Msa0888120:intron | 35.0% | |
!! | TTAGATTTGTTAAGGAGGGT+TGG | - | chr6_1:52205835-52205854 | Msa0888120:intron | 35.0% |
!!! | GGGTTGGATTTTAGGTTAAT+TGG | - | chr6_1:52205851-52205870 | Msa0888120:intron | 35.0% |
TTGAGAAAAGATTGTCGTTG+TGG | - | chr6_1:52205884-52205903 | Msa0888120:intron | 35.0% | |
! | GTTGTGGTGGAAATAAATTG+AGG | - | chr6_1:52205900-52205919 | Msa0888120:intron | 35.0% |
TATTGAGGGAAAATTGTTGC+AGG | - | chr6_1:52205977-52205996 | Msa0888120:intron | 35.0% | |
GTTCTTGAGAAGAGGAAATT+AGG | - | chr6_1:52206039-52206058 | Msa0888120:intron | 35.0% | |
!! | AGGAAATTAGGGTGGATTTT+GGG | - | chr6_1:52206051-52206070 | Msa0888120:intron | 35.0% |
!! | TTTTGGGGAATTTATGCGAA+CGG | - | chr6_1:52206067-52206086 | Msa0888120:intron | 35.0% |
TCACATAATGAAATCAGCCT+CGG | + | chr6_1:52206245-52206264 | None:intergenic | 35.0% | |
!!! | TTTGCAGCATTTTAACTGAC+TGG | - | chr6_1:52206324-52206343 | Msa0888120:CDS | 35.0% |
!!! | TTGCAGCATTTTAACTGACT+GGG | - | chr6_1:52206325-52206344 | Msa0888120:CDS | 35.0% |
!! | GGGTAATGGAACTTTGAAAA+AGG | - | chr6_1:52206367-52206386 | Msa0888120:CDS | 35.0% |
TTTCCATCAGCAACTCTAAA+GGG | + | chr6_1:52206425-52206444 | None:intergenic | 35.0% | |
ATTTCCATCAGCAACTCTAA+AGG | + | chr6_1:52206426-52206445 | None:intergenic | 35.0% | |
TAGAGTTGCTGATGGAAATT+TGG | - | chr6_1:52206427-52206446 | Msa0888120:CDS | 35.0% | |
AGAGTTGCTGATGGAAATTT+GGG | - | chr6_1:52206428-52206447 | Msa0888120:CDS | 35.0% | |
TTGGGAAGATTAGTATCTAC+TGG | - | chr6_1:52206446-52206465 | Msa0888120:exon | 35.0% | |
ACAAGCAAATTGTAAATGCC+AGG | + | chr6_1:52206500-52206519 | None:intergenic | 35.0% | |
AAAAACGGTGTGACATTTGT+CGG | + | chr6_1:52204571-52204590 | None:intergenic | 35.0% | |
ATCACACATTCTCAAAACGT+CGG | - | chr6_1:52204611-52204630 | Msa0888120:CDS | 35.0% | |
GAAAGAGGAAAAAGGATTTG+TGG | + | chr6_1:52204717-52204736 | None:intergenic | 35.0% | |
GCGTAGAAAATGCTAAACAA+AGG | + | chr6_1:52204768-52204787 | None:intergenic | 35.0% | |
TCAATCACAATGAACAAGCA+TGG | + | chr6_1:52204832-52204851 | None:intergenic | 35.0% | |
CACAACAACAAAGTCAACTT+AGG | + | chr6_1:52204922-52204941 | None:intergenic | 35.0% | |
GAAATTTGACTCTCTAATCG+TGG | - | chr6_1:52205039-52205058 | Msa0888120:intron | 35.0% | |
!!! | TGCCTTTGAGATTTTTTGCA+TGG | - | chr6_1:52205197-52205216 | Msa0888120:intron | 35.0% |
AGTATCCTTAACCAATAGTG+AGG | - | chr6_1:52205237-52205256 | Msa0888120:intron | 35.0% | |
! | ATATGCCTCACTATTGGTTA+AGG | + | chr6_1:52205245-52205264 | None:intergenic | 35.0% |
AGAATGAATTTAAATGGCGG+CGG | - | chr6_1:52205312-52205331 | Msa0888120:intron | 35.0% | |
TGGAACCAAGAGATAAAAGT+AGG | - | chr6_1:52205457-52205476 | Msa0888120:intron | 35.0% | |
ACCAAGAGATAAAAGTAGGA+AGG | - | chr6_1:52205461-52205480 | Msa0888120:intron | 35.0% | |
!! | ACCTTCCTACTTTTATCTCT+TGG | + | chr6_1:52205465-52205484 | None:intergenic | 35.0% |
! | ATATTTTATGTGCGTGTGTG+TGG | - | chr6_1:52205680-52205699 | Msa0888120:intron | 35.0% |
TGTGTGTGGTAATTGAATTG+TGG | - | chr6_1:52205694-52205713 | Msa0888120:intron | 35.0% | |
!! | TTAGATTTGTTAAGGAGGGT+TGG | - | chr6_1:52205835-52205854 | Msa0888120:intron | 35.0% |
!!! | GGGTTGGATTTTAGGTTAAT+TGG | - | chr6_1:52205851-52205870 | Msa0888120:intron | 35.0% |
TTGAGAAAAGATTGTCGTTG+TGG | - | chr6_1:52205884-52205903 | Msa0888120:intron | 35.0% | |
! | GTTGTGGTGGAAATAAATTG+AGG | - | chr6_1:52205900-52205919 | Msa0888120:intron | 35.0% |
TATTGAGGGAAAATTGTTGC+AGG | - | chr6_1:52205977-52205996 | Msa0888120:intron | 35.0% | |
GTTCTTGAGAAGAGGAAATT+AGG | - | chr6_1:52206039-52206058 | Msa0888120:intron | 35.0% | |
!! | AGGAAATTAGGGTGGATTTT+GGG | - | chr6_1:52206051-52206070 | Msa0888120:intron | 35.0% |
!! | TTTTGGGGAATTTATGCGAA+CGG | - | chr6_1:52206067-52206086 | Msa0888120:intron | 35.0% |
TCACATAATGAAATCAGCCT+CGG | + | chr6_1:52206245-52206264 | None:intergenic | 35.0% | |
!!! | TTTGCAGCATTTTAACTGAC+TGG | - | chr6_1:52206324-52206343 | Msa0888120:CDS | 35.0% |
!!! | TTGCAGCATTTTAACTGACT+GGG | - | chr6_1:52206325-52206344 | Msa0888120:CDS | 35.0% |
!! | GGGTAATGGAACTTTGAAAA+AGG | - | chr6_1:52206367-52206386 | Msa0888120:CDS | 35.0% |
TTTCCATCAGCAACTCTAAA+GGG | + | chr6_1:52206425-52206444 | None:intergenic | 35.0% | |
ATTTCCATCAGCAACTCTAA+AGG | + | chr6_1:52206426-52206445 | None:intergenic | 35.0% | |
TAGAGTTGCTGATGGAAATT+TGG | - | chr6_1:52206427-52206446 | Msa0888120:CDS | 35.0% | |
AGAGTTGCTGATGGAAATTT+GGG | - | chr6_1:52206428-52206447 | Msa0888120:CDS | 35.0% | |
TTGGGAAGATTAGTATCTAC+TGG | - | chr6_1:52206446-52206465 | Msa0888120:exon | 35.0% | |
ACAAGCAAATTGTAAATGCC+AGG | + | chr6_1:52206500-52206519 | None:intergenic | 35.0% | |
AACTCGACTATGAAGAGGAT+TGG | + | chr6_1:52204517-52204536 | None:intergenic | 40.0% | |
!!! | GTTTTGAGAATGTGTGATGG+TGG | + | chr6_1:52204609-52204628 | None:intergenic | 40.0% |
!!! | GACGTTTTGAGAATGTGTGA+TGG | + | chr6_1:52204612-52204631 | None:intergenic | 40.0% |
TCACACATTCTCAAAACGTC+GGG | - | chr6_1:52204612-52204631 | Msa0888120:CDS | 40.0% | |
GCTTCATAGTCGAGTATCTT+TGG | - | chr6_1:52204655-52204674 | Msa0888120:CDS | 40.0% | |
TTCGATCTGCAATGTGAAGT+CGG | + | chr6_1:52204692-52204711 | None:intergenic | 40.0% | |
CTGTGCATGAAAGAGGAAAA+AGG | + | chr6_1:52204725-52204744 | None:intergenic | 40.0% | |
! | CTTTTTCCTCTTTCATGCAC+AGG | - | chr6_1:52204723-52204742 | Msa0888120:intron | 40.0% |
CATAGCATATGCCTCACTAT+TGG | + | chr6_1:52205251-52205270 | None:intergenic | 40.0% | |
GAGGTATAGAGATGTCAAAG+TGG | - | chr6_1:52205376-52205395 | Msa0888120:intron | 40.0% | |
TAAACAAAGGGAATGCAACC+AGG | - | chr6_1:52205417-52205436 | Msa0888120:intron | 40.0% | |
AAACAAAGGGAATGCAACCA+GGG | - | chr6_1:52205418-52205437 | Msa0888120:intron | 40.0% | |
TATCTCTTGGTTCCACTACT+TGG | + | chr6_1:52205452-52205471 | None:intergenic | 40.0% | |
CGATTTACCTTGTTCTGTTC+TGG | - | chr6_1:52205609-52205628 | Msa0888120:intron | 40.0% | |
ATTAGTACACTAGGGAATGG+TGG | - | chr6_1:52205761-52205780 | Msa0888120:intron | 40.0% | |
! | GTTAAGGAGGGTTGGATTTT+AGG | - | chr6_1:52205843-52205862 | Msa0888120:intron | 40.0% |
AGAAAAGATTGTCGTTGTGG+TGG | - | chr6_1:52205887-52205906 | Msa0888120:intron | 40.0% | |
TTGAGGTAACTATCCTGAGT+TGG | - | chr6_1:52205917-52205936 | Msa0888120:intron | 40.0% | |
TGAGAAGAGAATGCATATGG+AGG | - | chr6_1:52205947-52205966 | Msa0888120:intron | 40.0% | |
!! | AGTTGATGGTTCTTGAGAAG+AGG | - | chr6_1:52206031-52206050 | Msa0888120:intron | 40.0% |
TTGAGAAGAGGAAATTAGGG+TGG | - | chr6_1:52206043-52206062 | Msa0888120:intron | 40.0% | |
!! | GAGGAAATTAGGGTGGATTT+TGG | - | chr6_1:52206050-52206069 | Msa0888120:intron | 40.0% |
!! | GGAAATTAGGGTGGATTTTG+GGG | - | chr6_1:52206052-52206071 | Msa0888120:intron | 40.0% |
! | GAGGCTGATTTCATTATGTG+AGG | - | chr6_1:52206244-52206263 | Msa0888120:intron | 40.0% |
!!! | TGCAGCATTTTAACTGACTG+GGG | - | chr6_1:52206326-52206345 | Msa0888120:CDS | 40.0% |
GGTAAACACAGCAAAGTGAT+GGG | - | chr6_1:52206347-52206366 | Msa0888120:CDS | 40.0% | |
! | TGAAGCACTCCTTGATAGAA+TGG | - | chr6_1:52206394-52206413 | Msa0888120:CDS | 40.0% |
! | GAAGCACTCCTTGATAGAAT+GGG | - | chr6_1:52206395-52206414 | Msa0888120:CDS | 40.0% |
AGTATCTACTGGAGATTTGG+TGG | - | chr6_1:52206457-52206476 | Msa0888120:five_prime_UTR | 40.0% | |
AACTCGACTATGAAGAGGAT+TGG | + | chr6_1:52204517-52204536 | None:intergenic | 40.0% | |
!!! | GTTTTGAGAATGTGTGATGG+TGG | + | chr6_1:52204609-52204628 | None:intergenic | 40.0% |
!!! | GACGTTTTGAGAATGTGTGA+TGG | + | chr6_1:52204612-52204631 | None:intergenic | 40.0% |
TCACACATTCTCAAAACGTC+GGG | - | chr6_1:52204612-52204631 | Msa0888120:CDS | 40.0% | |
GCTTCATAGTCGAGTATCTT+TGG | - | chr6_1:52204655-52204674 | Msa0888120:CDS | 40.0% | |
TTCGATCTGCAATGTGAAGT+CGG | + | chr6_1:52204692-52204711 | None:intergenic | 40.0% | |
CTGTGCATGAAAGAGGAAAA+AGG | + | chr6_1:52204725-52204744 | None:intergenic | 40.0% | |
! | CTTTTTCCTCTTTCATGCAC+AGG | - | chr6_1:52204723-52204742 | Msa0888120:intron | 40.0% |
CATAGCATATGCCTCACTAT+TGG | + | chr6_1:52205251-52205270 | None:intergenic | 40.0% | |
GAGGTATAGAGATGTCAAAG+TGG | - | chr6_1:52205376-52205395 | Msa0888120:intron | 40.0% | |
TAAACAAAGGGAATGCAACC+AGG | - | chr6_1:52205417-52205436 | Msa0888120:intron | 40.0% | |
AAACAAAGGGAATGCAACCA+GGG | - | chr6_1:52205418-52205437 | Msa0888120:intron | 40.0% | |
TATCTCTTGGTTCCACTACT+TGG | + | chr6_1:52205452-52205471 | None:intergenic | 40.0% | |
CGATTTACCTTGTTCTGTTC+TGG | - | chr6_1:52205609-52205628 | Msa0888120:intron | 40.0% | |
ATTAGTACACTAGGGAATGG+TGG | - | chr6_1:52205761-52205780 | Msa0888120:intron | 40.0% | |
! | GTTAAGGAGGGTTGGATTTT+AGG | - | chr6_1:52205843-52205862 | Msa0888120:intron | 40.0% |
AGAAAAGATTGTCGTTGTGG+TGG | - | chr6_1:52205887-52205906 | Msa0888120:intron | 40.0% | |
TTGAGGTAACTATCCTGAGT+TGG | - | chr6_1:52205917-52205936 | Msa0888120:intron | 40.0% | |
TGAGAAGAGAATGCATATGG+AGG | - | chr6_1:52205947-52205966 | Msa0888120:intron | 40.0% | |
!! | AGTTGATGGTTCTTGAGAAG+AGG | - | chr6_1:52206031-52206050 | Msa0888120:intron | 40.0% |
TTGAGAAGAGGAAATTAGGG+TGG | - | chr6_1:52206043-52206062 | Msa0888120:intron | 40.0% | |
!! | GAGGAAATTAGGGTGGATTT+TGG | - | chr6_1:52206050-52206069 | Msa0888120:intron | 40.0% |
!! | GGAAATTAGGGTGGATTTTG+GGG | - | chr6_1:52206052-52206071 | Msa0888120:intron | 40.0% |
! | GAGGCTGATTTCATTATGTG+AGG | - | chr6_1:52206244-52206263 | Msa0888120:intron | 40.0% |
!!! | TGCAGCATTTTAACTGACTG+GGG | - | chr6_1:52206326-52206345 | Msa0888120:CDS | 40.0% |
GGTAAACACAGCAAAGTGAT+GGG | - | chr6_1:52206347-52206366 | Msa0888120:CDS | 40.0% | |
! | TGAAGCACTCCTTGATAGAA+TGG | - | chr6_1:52206394-52206413 | Msa0888120:CDS | 40.0% |
! | GAAGCACTCCTTGATAGAAT+GGG | - | chr6_1:52206395-52206414 | Msa0888120:CDS | 40.0% |
AGTATCTACTGGAGATTTGG+TGG | - | chr6_1:52206457-52206476 | Msa0888120:five_prime_UTR | 40.0% | |
TGAAGAGGATTGGAACTCGA+TGG | + | chr6_1:52204507-52204526 | None:intergenic | 45.0% | |
GGTGAAACTCGACTATGAAG+AGG | + | chr6_1:52204522-52204541 | None:intergenic | 45.0% | |
AGGGTGAGAAGGGTGAAAAA+CGG | + | chr6_1:52204586-52204605 | None:intergenic | 45.0% | |
!! | TGAGAATGTGTGATGGTGGA+GGG | + | chr6_1:52204605-52204624 | None:intergenic | 45.0% |
!! | TTGAGAATGTGTGATGGTGG+AGG | + | chr6_1:52204606-52204625 | None:intergenic | 45.0% |
ACTCGACTATGAAGCTCGAT+CGG | + | chr6_1:52204650-52204669 | None:intergenic | 45.0% | |
ACGTTACCTGTGCATGAAAG+AGG | + | chr6_1:52204732-52204751 | None:intergenic | 45.0% | |
ACATTGCTCTCGTGAATCAG+AGG | - | chr6_1:52205357-52205376 | Msa0888120:intron | 45.0% | |
AGGGAAAATTGTTGCAGGTG+TGG | - | chr6_1:52205982-52206001 | Msa0888120:intron | 45.0% | |
GGTGTGGTTGAAACGAATTG+AGG | - | chr6_1:52205998-52206017 | Msa0888120:intron | 45.0% | |
GCTCAAAAGACCTCACCTAA+CGG | - | chr6_1:52206120-52206139 | Msa0888120:intron | 45.0% | |
AACCAACAAACCGTTAGGTG+AGG | + | chr6_1:52206133-52206152 | None:intergenic | 45.0% | |
GGGTAAACACAGCAAAGTGA+TGG | - | chr6_1:52206346-52206365 | Msa0888120:CDS | 45.0% | |
!! | CACAGCAAAGTGATGGGTAA+TGG | - | chr6_1:52206353-52206372 | Msa0888120:CDS | 45.0% |
AGGGTGATCCCATTCTATCA+AGG | + | chr6_1:52206406-52206425 | None:intergenic | 45.0% | |
!! | TCACCCTTTAGAGTTGCTGA+TGG | - | chr6_1:52206419-52206438 | Msa0888120:CDS | 45.0% |
TGAAGAGGATTGGAACTCGA+TGG | + | chr6_1:52204507-52204526 | None:intergenic | 45.0% | |
GGTGAAACTCGACTATGAAG+AGG | + | chr6_1:52204522-52204541 | None:intergenic | 45.0% | |
AGGGTGAGAAGGGTGAAAAA+CGG | + | chr6_1:52204586-52204605 | None:intergenic | 45.0% | |
!! | TGAGAATGTGTGATGGTGGA+GGG | + | chr6_1:52204605-52204624 | None:intergenic | 45.0% |
!! | TTGAGAATGTGTGATGGTGG+AGG | + | chr6_1:52204606-52204625 | None:intergenic | 45.0% |
ACTCGACTATGAAGCTCGAT+CGG | + | chr6_1:52204650-52204669 | None:intergenic | 45.0% | |
ACGTTACCTGTGCATGAAAG+AGG | + | chr6_1:52204732-52204751 | None:intergenic | 45.0% | |
ACATTGCTCTCGTGAATCAG+AGG | - | chr6_1:52205357-52205376 | Msa0888120:intron | 45.0% | |
AGGGAAAATTGTTGCAGGTG+TGG | - | chr6_1:52205982-52206001 | Msa0888120:intron | 45.0% | |
GGTGTGGTTGAAACGAATTG+AGG | - | chr6_1:52205998-52206017 | Msa0888120:intron | 45.0% | |
GCTCAAAAGACCTCACCTAA+CGG | - | chr6_1:52206120-52206139 | Msa0888120:intron | 45.0% | |
AACCAACAAACCGTTAGGTG+AGG | + | chr6_1:52206133-52206152 | None:intergenic | 45.0% | |
GGGTAAACACAGCAAAGTGA+TGG | - | chr6_1:52206346-52206365 | Msa0888120:CDS | 45.0% | |
!! | CACAGCAAAGTGATGGGTAA+TGG | - | chr6_1:52206353-52206372 | Msa0888120:CDS | 45.0% |
AGGGTGATCCCATTCTATCA+AGG | + | chr6_1:52206406-52206425 | None:intergenic | 45.0% | |
!! | TCACCCTTTAGAGTTGCTGA+TGG | - | chr6_1:52206419-52206438 | Msa0888120:CDS | 45.0% |
!!! | ATTTTTTTTTTTTTAAACAA+AGG | - | chr6_1:52205404-52205423 | Msa0888120:intron | 5.0% |
!!! | TTTTTTTTTTTTTAAACAAA+GGG | - | chr6_1:52205405-52205424 | Msa0888120:intron | 5.0% |
!!! | ATTTTTTTTTTTTTAAACAA+AGG | - | chr6_1:52205404-52205423 | Msa0888120:intron | 5.0% |
!!! | TTTTTTTTTTTTTAAACAAA+GGG | - | chr6_1:52205405-52205424 | Msa0888120:intron | 5.0% |
AGAGGATTGGAACTCGATGG+TGG | + | chr6_1:52204504-52204523 | None:intergenic | 50.0% | |
AAAGGGAATGCAACCAGGGA+GGG | - | chr6_1:52205422-52205441 | Msa0888120:intron | 50.0% | |
GACCTCACCTAACGGTTTGT+TGG | - | chr6_1:52206128-52206147 | Msa0888120:intron | 50.0% | |
AAGTGTTTCCTCCTCCCAGA+CGG | + | chr6_1:52206210-52206229 | None:intergenic | 50.0% | |
CACTTGTGTACATTCGTCCG+AGG | - | chr6_1:52206225-52206244 | Msa0888120:intron | 50.0% | |
! | GAGGCTGATTTCATTGTCCG+AGG | - | chr6_1:52206263-52206282 | Msa0888120:intron | 50.0% |
!! | CTGGAGATTTGGTGGCTACT+TGG | - | chr6_1:52206465-52206484 | Msa0888120:five_prime_UTR | 50.0% |
GCTACTTGGCTGAAACAACC+TGG | - | chr6_1:52206479-52206498 | Msa0888120:five_prime_UTR | 50.0% | |
AGAGGATTGGAACTCGATGG+TGG | + | chr6_1:52204504-52204523 | None:intergenic | 50.0% | |
AAAGGGAATGCAACCAGGGA+GGG | - | chr6_1:52205422-52205441 | Msa0888120:intron | 50.0% | |
GACCTCACCTAACGGTTTGT+TGG | - | chr6_1:52206128-52206147 | Msa0888120:intron | 50.0% | |
AAGTGTTTCCTCCTCCCAGA+CGG | + | chr6_1:52206210-52206229 | None:intergenic | 50.0% | |
CACTTGTGTACATTCGTCCG+AGG | - | chr6_1:52206225-52206244 | Msa0888120:intron | 50.0% | |
! | GAGGCTGATTTCATTGTCCG+AGG | - | chr6_1:52206263-52206282 | Msa0888120:intron | 50.0% |
!! | CTGGAGATTTGGTGGCTACT+TGG | - | chr6_1:52206465-52206484 | Msa0888120:five_prime_UTR | 50.0% |
GCTACTTGGCTGAAACAACC+TGG | - | chr6_1:52206479-52206498 | Msa0888120:five_prime_UTR | 50.0% | |
! | ATGGTGGAGGAATGCGATGG+CGG | + | chr6_1:52204488-52204507 | None:intergenic | 55.0% |
!! | TCGATGGTGGAGGAATGCGA+TGG | + | chr6_1:52204491-52204510 | None:intergenic | 55.0% |
! | GGATTGGAACTCGATGGTGG+AGG | + | chr6_1:52204501-52204520 | None:intergenic | 55.0% |
!! | GTGATGGTGGAGGGTGAGAA+GGG | + | chr6_1:52204596-52204615 | None:intergenic | 55.0% |
!! | TGTGATGGTGGAGGGTGAGA+AGG | + | chr6_1:52204597-52204616 | None:intergenic | 55.0% |
CAAAGGGAATGCAACCAGGG+AGG | - | chr6_1:52205421-52205440 | Msa0888120:intron | 55.0% | |
GTACACTAGGGAATGGTGGC+TGG | - | chr6_1:52205765-52205784 | Msa0888120:intron | 55.0% | |
AGACGGCGACTTACAGACTC+CGG | + | chr6_1:52206193-52206212 | None:intergenic | 55.0% | |
GAGTCTGTAAGTCGCCGTCT+GGG | - | chr6_1:52206193-52206212 | Msa0888120:intron | 55.0% | |
! | ATGGTGGAGGAATGCGATGG+CGG | + | chr6_1:52204488-52204507 | None:intergenic | 55.0% |
!! | TCGATGGTGGAGGAATGCGA+TGG | + | chr6_1:52204491-52204510 | None:intergenic | 55.0% |
! | GGATTGGAACTCGATGGTGG+AGG | + | chr6_1:52204501-52204520 | None:intergenic | 55.0% |
!! | GTGATGGTGGAGGGTGAGAA+GGG | + | chr6_1:52204596-52204615 | None:intergenic | 55.0% |
!! | TGTGATGGTGGAGGGTGAGA+AGG | + | chr6_1:52204597-52204616 | None:intergenic | 55.0% |
CAAAGGGAATGCAACCAGGG+AGG | - | chr6_1:52205421-52205440 | Msa0888120:intron | 55.0% | |
GTACACTAGGGAATGGTGGC+TGG | - | chr6_1:52205765-52205784 | Msa0888120:intron | 55.0% | |
AGACGGCGACTTACAGACTC+CGG | + | chr6_1:52206193-52206212 | None:intergenic | 55.0% | |
GAGTCTGTAAGTCGCCGTCT+GGG | - | chr6_1:52206193-52206212 | Msa0888120:intron | 55.0% | |
TGGTGGAGGAATGCGATGGC+GGG | + | chr6_1:52204487-52204506 | None:intergenic | 60.0% | |
!! | ACTACTTGGTGCACCCTCCC+TGG | + | chr6_1:52205438-52205457 | None:intergenic | 60.0% |
! | AGGGAGGGTGCACCAAGTAG+TGG | - | chr6_1:52205437-52205456 | Msa0888120:intron | 60.0% |
GGAGTCTGTAAGTCGCCGTC+TGG | - | chr6_1:52206192-52206211 | Msa0888120:intron | 60.0% | |
TCTGTAAGTCGCCGTCTGGG+AGG | - | chr6_1:52206196-52206215 | Msa0888120:intron | 60.0% | |
TGGTGGAGGAATGCGATGGC+GGG | + | chr6_1:52204487-52204506 | None:intergenic | 60.0% | |
!! | ACTACTTGGTGCACCCTCCC+TGG | + | chr6_1:52205438-52205457 | None:intergenic | 60.0% |
! | AGGGAGGGTGCACCAAGTAG+TGG | - | chr6_1:52205437-52205456 | Msa0888120:intron | 60.0% |
GGAGTCTGTAAGTCGCCGTC+TGG | - | chr6_1:52206192-52206211 | Msa0888120:intron | 60.0% | |
TCTGTAAGTCGCCGTCTGGG+AGG | - | chr6_1:52206196-52206215 | Msa0888120:intron | 60.0% | |
GTAAGTCGCCGTCTGGGAGG+AGG | - | chr6_1:52206199-52206218 | Msa0888120:intron | 65.0% | |
GTAAGTCGCCGTCTGGGAGG+AGG | - | chr6_1:52206199-52206218 | Msa0888120:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_1 | gene | 52204484 | 52206538 | 52204484 | ID=Msa0888120;Name=Msa0888120 |
chr6_1 | mRNA | 52204484 | 52206538 | 52204484 | ID=Msa0888120-mRNA-1;Parent=Msa0888120;Name=Msa0888120-mRNA-1;_AED=0.00;_eAED=0.00;_QI=91|1|0.5|1|1|1|2|0|126 |
chr6_1 | exon | 52204484 | 52204691 | 52204484 | ID=Msa0888120-mRNA-1:exon:10513;Parent=Msa0888120-mRNA-1 |
chr6_1 | exon | 52206278 | 52206538 | 52206278 | ID=Msa0888120-mRNA-1:exon:10512;Parent=Msa0888120-mRNA-1 |
chr6_1 | five_prime_UTR | 52206448 | 52206538 | 52206448 | ID=Msa0888120-mRNA-1:five_prime_utr;Parent=Msa0888120-mRNA-1 |
chr6_1 | CDS | 52206278 | 52206447 | 52206278 | ID=Msa0888120-mRNA-1:cds;Parent=Msa0888120-mRNA-1 |
chr6_1 | CDS | 52204484 | 52204691 | 52204484 | ID=Msa0888120-mRNA-1:cds;Parent=Msa0888120-mRNA-1 |
Gene Sequence |
Protein sequence |