AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0888120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0888120 MtrunA17_Chr7g0220481 74.286 70 18 0 57 126 770 839 3.02e-31 116
Msa0888120 MtrunA17_Chr7g0220501 68.571 70 22 0 57 126 805 874 3.02e-28 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0888120 AT2G31400.1 55.072 69 31 0 57 125 820 888 5.18e-20 84.7

Find 38 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAGTTGCTGATGGAAATT+TGG 0.155213 6_1:-52204573 Msa0888120:CDS
GCTTCATAGTCGAGTATCTT+TGG 0.287306 6_1:-52206345 Msa0888120:CDS
ATTAGTATCTACTGGAGATT+TGG 0.327482 6_1:-52204546 Msa0888120:CDS
CTCAATCACAAAAGATGAAT+TGG 0.335631 6_1:+52206460 None:intergenic
CTGGAGATTTGGTGGCTACT+TGG 0.335899 6_1:-52204535 Msa0888120:CDS
GGGTAATGGAACTTTGAAAA+AGG 0.361807 6_1:-52204633 Msa0888120:CDS
CTGTGCATGAAAGAGGAAAA+AGG 0.368625 6_1:+52206278 None:intergenic
AGAGTTGCTGATGGAAATTT+GGG 0.409005 6_1:-52204572 Msa0888120:CDS
TTGGGAAGATTAGTATCTAC+TGG 0.422023 6_1:-52204554 Msa0888120:CDS
TGAAGCACTCCTTGATAGAA+TGG 0.451859 6_1:-52204606 Msa0888120:CDS
TTTCCATCAGCAACTCTAAA+GGG 0.457588 6_1:+52204578 None:intergenic
ATTTCCATCAGCAACTCTAA+AGG 0.473853 6_1:+52204577 None:intergenic
TTGAGAATGTGTGATGGTGG+AGG 0.476292 6_1:+52206397 None:intergenic
CACAGCAAAGTGATGGGTAA+TGG 0.478108 6_1:-52204647 Msa0888120:CDS
AACTCGACTATGAAGAGGAT+TGG 0.495871 6_1:+52206486 None:intergenic
TGTGATGGTGGAGGGTGAGA+AGG 0.501460 6_1:+52206406 None:intergenic
ACAAGCAAATTGTAAATGCC+AGG 0.503434 6_1:+52204503 None:intergenic
AGTATCTACTGGAGATTTGG+TGG 0.510899 6_1:-52204543 Msa0888120:CDS
ACGTTACCTGTGCATGAAAG+AGG 0.516725 6_1:+52206271 None:intergenic
TCACACATTCTCAAAACGTC+GGG 0.528238 6_1:-52206388 Msa0888120:CDS
TGGTGGAGGAATGCGATGGC+GGG 0.532138 6_1:+52206516 None:intergenic
GGGTAAACACAGCAAAGTGA+TGG 0.537436 6_1:-52204654 Msa0888120:CDS
GTGATGGTGGAGGGTGAGAA+GGG 0.545862 6_1:+52206407 None:intergenic
GAAGCACTCCTTGATAGAAT+GGG 0.550026 6_1:-52204605 Msa0888120:CDS
GCTACTTGGCTGAAACAACC+TGG 0.552847 6_1:-52204521 Msa0888120:CDS
AGGGTGATCCCATTCTATCA+AGG 0.558166 6_1:+52204597 None:intergenic
TTCGATCTGCAATGTGAAGT+CGG 0.563487 6_1:+52206311 None:intergenic
TGAGAATGTGTGATGGTGGA+GGG 0.564229 6_1:+52206398 None:intergenic
TCACCCTTTAGAGTTGCTGA+TGG 0.571046 6_1:-52204581 Msa0888120:CDS
ATGGTGGAGGAATGCGATGG+CGG 0.576547 6_1:+52206515 None:intergenic
GGTAAACACAGCAAAGTGAT+GGG 0.612115 6_1:-52204653 Msa0888120:CDS
ATCACACATTCTCAAAACGT+CGG 0.617037 6_1:-52206389 Msa0888120:CDS
GGATTGGAACTCGATGGTGG+AGG 0.619848 6_1:+52206502 None:intergenic
ACTCGACTATGAAGCTCGAT+CGG 0.625883 6_1:+52206353 None:intergenic
GGTGAAACTCGACTATGAAG+AGG 0.628401 6_1:+52206481 None:intergenic
TGAAGAGGATTGGAACTCGA+TGG 0.637611 6_1:+52206496 None:intergenic
AGAGGATTGGAACTCGATGG+TGG 0.639295 6_1:+52206499 None:intergenic
TCGATGGTGGAGGAATGCGA+TGG 0.716035 6_1:+52206512 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTAATTAGATTTGTTA+AGG - chr6_1:52205827-52205846 Msa0888120:intron 10.0%
!!! TTATTTAATTAGATTTGTTA+AGG - chr6_1:52205827-52205846 Msa0888120:intron 10.0%
!! ATTGATATTAATGAGAAATT+AGG - chr6_1:52205117-52205136 Msa0888120:intron 15.0%
!! TAATGTAGAATGAATTTAAA+TGG - chr6_1:52205306-52205325 Msa0888120:intron 15.0%
!!! ATAAGTAAATTACATGATTT+TGG - chr6_1:52205501-52205520 Msa0888120:intron 15.0%
!!! AAGTGTATTTTTGTTATAAT+TGG - chr6_1:52205728-52205747 Msa0888120:intron 15.0%
!!! AGTGTATTTTTGTTATAATT+GGG - chr6_1:52205729-52205748 Msa0888120:intron 15.0%
!! AATAAATTAATTAGTACACT+AGG - chr6_1:52205752-52205771 Msa0888120:intron 15.0%
!! ATAAATTAATTAGTACACTA+GGG - chr6_1:52205753-52205772 Msa0888120:intron 15.0%
!! ATTGATATTAATGAGAAATT+AGG - chr6_1:52205117-52205136 Msa0888120:intron 15.0%
!! TAATGTAGAATGAATTTAAA+TGG - chr6_1:52205306-52205325 Msa0888120:intron 15.0%
!!! ATAAGTAAATTACATGATTT+TGG - chr6_1:52205501-52205520 Msa0888120:intron 15.0%
!!! AAGTGTATTTTTGTTATAAT+TGG - chr6_1:52205728-52205747 Msa0888120:intron 15.0%
!!! AGTGTATTTTTGTTATAATT+GGG - chr6_1:52205729-52205748 Msa0888120:intron 15.0%
!! AATAAATTAATTAGTACACT+AGG - chr6_1:52205752-52205771 Msa0888120:intron 15.0%
!! ATAAATTAATTAGTACACTA+GGG - chr6_1:52205753-52205772 Msa0888120:intron 15.0%
!!! TTAGAGATCCTAATATTTTA+TGG - chr6_1:52205093-52205112 Msa0888120:intron 20.0%
!! TATCAATGCCATAAAATATT+AGG + chr6_1:52205104-52205123 None:intergenic 20.0%
!!! ATTGATTTTGTGTTAATTAG+AGG - chr6_1:52205150-52205169 Msa0888120:intron 20.0%
!!! TTTAATTAGATTTGTTAAGG+AGG - chr6_1:52205830-52205849 Msa0888120:intron 20.0%
!!! TTAATTAGATTTGTTAAGGA+GGG - chr6_1:52205831-52205850 Msa0888120:intron 20.0%
!!! TTAGAGATCCTAATATTTTA+TGG - chr6_1:52205093-52205112 Msa0888120:intron 20.0%
!! TATCAATGCCATAAAATATT+AGG + chr6_1:52205104-52205123 None:intergenic 20.0%
!!! ATTGATTTTGTGTTAATTAG+AGG - chr6_1:52205150-52205169 Msa0888120:intron 20.0%
!!! TTTAATTAGATTTGTTAAGG+AGG - chr6_1:52205830-52205849 Msa0888120:intron 20.0%
!!! TTAATTAGATTTGTTAAGGA+GGG - chr6_1:52205831-52205850 Msa0888120:intron 20.0%
! TCTCTAAACACAAATTGAAA+AGG + chr6_1:52205080-52205099 None:intergenic 25.0%
! TGTAGAATGAATTTAAATGG+CGG - chr6_1:52205309-52205328 Msa0888120:intron 25.0%
! AACAATAAATCTTCACCTAT+AGG + chr6_1:52205642-52205661 None:intergenic 25.0%
! ATGTATCTTGAATTGAAGAA+AGG - chr6_1:52206098-52206117 Msa0888120:intron 25.0%
!!! TTGGTTTTTTAATTCAGACT+AGG - chr6_1:52206147-52206166 Msa0888120:intron 25.0%
! TCTCTAAACACAAATTGAAA+AGG + chr6_1:52205080-52205099 None:intergenic 25.0%
! TGTAGAATGAATTTAAATGG+CGG - chr6_1:52205309-52205328 Msa0888120:intron 25.0%
! AACAATAAATCTTCACCTAT+AGG + chr6_1:52205642-52205661 None:intergenic 25.0%
! ATGTATCTTGAATTGAAGAA+AGG - chr6_1:52206098-52206117 Msa0888120:intron 25.0%
!!! TTGGTTTTTTAATTCAGACT+AGG - chr6_1:52206147-52206166 Msa0888120:intron 25.0%
CTCAATCACAAAAGATGAAT+TGG + chr6_1:52204543-52204562 None:intergenic 30.0%
!!! TTGAGCTTTGAATTTTGCTA+AGG - chr6_1:52204848-52204867 Msa0888120:intron 30.0%
CACAATGATAAAGTCAAGTT+TGG + chr6_1:52204986-52205005 None:intergenic 30.0%
AAATTTGACTCTCTAATCGT+GGG - chr6_1:52205040-52205059 Msa0888120:intron 30.0%
AACCATGCAAAAAATCTCAA+AGG + chr6_1:52205202-52205221 None:intergenic 30.0%
AGATATGAAACAATAGAGAC+TGG + chr6_1:52205545-52205564 None:intergenic 30.0%
! CAAGGTAAATCGATATTTTC+AGG + chr6_1:52205601-52205620 None:intergenic 30.0%
TAATTATCCAGAACAGAACA+AGG + chr6_1:52205619-52205638 None:intergenic 30.0%
! TGTTCTGGATAATTACCTAT+AGG - chr6_1:52205624-52205643 Msa0888120:intron 30.0%
TTAATTAGTACACTAGGGAA+TGG - chr6_1:52205758-52205777 Msa0888120:intron 30.0%
TTCTCAAAAATAACCAACTC+AGG + chr6_1:52205933-52205952 None:intergenic 30.0%
!! TTTTGAGAAGAGAATGCATA+TGG - chr6_1:52205944-52205963 Msa0888120:intron 30.0%
TATGGAGGTTTATGTTATTG+AGG - chr6_1:52205962-52205981 Msa0888120:intron 30.0%
ATGGAGGTTTATGTTATTGA+GGG - chr6_1:52205963-52205982 Msa0888120:intron 30.0%
! GAGGTATTTATACAAGTTGA+TGG - chr6_1:52206017-52206036 Msa0888120:intron 30.0%
TTCTTGAGAAGAGGAAATTA+GGG - chr6_1:52206040-52206059 Msa0888120:intron 30.0%
TAAAAAACCAACAAACCGTT+AGG + chr6_1:52206138-52206157 None:intergenic 30.0%
AGTGATCTTTAGTGTTTATC+CGG - chr6_1:52206171-52206190 Msa0888120:intron 30.0%
AATACTAAAGAAATCAGCCT+CGG + chr6_1:52206283-52206302 None:intergenic 30.0%
ATTAGTATCTACTGGAGATT+TGG - chr6_1:52206454-52206473 Msa0888120:five_prime_UTR 30.0%
CTCAATCACAAAAGATGAAT+TGG + chr6_1:52204543-52204562 None:intergenic 30.0%
!!! TTGAGCTTTGAATTTTGCTA+AGG - chr6_1:52204848-52204867 Msa0888120:intron 30.0%
CACAATGATAAAGTCAAGTT+TGG + chr6_1:52204986-52205005 None:intergenic 30.0%
AAATTTGACTCTCTAATCGT+GGG - chr6_1:52205040-52205059 Msa0888120:intron 30.0%
AACCATGCAAAAAATCTCAA+AGG + chr6_1:52205202-52205221 None:intergenic 30.0%
AGATATGAAACAATAGAGAC+TGG + chr6_1:52205545-52205564 None:intergenic 30.0%
! CAAGGTAAATCGATATTTTC+AGG + chr6_1:52205601-52205620 None:intergenic 30.0%
TAATTATCCAGAACAGAACA+AGG + chr6_1:52205619-52205638 None:intergenic 30.0%
! TGTTCTGGATAATTACCTAT+AGG - chr6_1:52205624-52205643 Msa0888120:intron 30.0%
TTAATTAGTACACTAGGGAA+TGG - chr6_1:52205758-52205777 Msa0888120:intron 30.0%
TTCTCAAAAATAACCAACTC+AGG + chr6_1:52205933-52205952 None:intergenic 30.0%
!! TTTTGAGAAGAGAATGCATA+TGG - chr6_1:52205944-52205963 Msa0888120:intron 30.0%
TATGGAGGTTTATGTTATTG+AGG - chr6_1:52205962-52205981 Msa0888120:intron 30.0%
ATGGAGGTTTATGTTATTGA+GGG - chr6_1:52205963-52205982 Msa0888120:intron 30.0%
! GAGGTATTTATACAAGTTGA+TGG - chr6_1:52206017-52206036 Msa0888120:intron 30.0%
TTCTTGAGAAGAGGAAATTA+GGG - chr6_1:52206040-52206059 Msa0888120:intron 30.0%
TAAAAAACCAACAAACCGTT+AGG + chr6_1:52206138-52206157 None:intergenic 30.0%
AGTGATCTTTAGTGTTTATC+CGG - chr6_1:52206171-52206190 Msa0888120:intron 30.0%
AATACTAAAGAAATCAGCCT+CGG + chr6_1:52206283-52206302 None:intergenic 30.0%
ATTAGTATCTACTGGAGATT+TGG - chr6_1:52206454-52206473 Msa0888120:five_prime_UTR 30.0%
AAAAACGGTGTGACATTTGT+CGG + chr6_1:52204571-52204590 None:intergenic 35.0%
ATCACACATTCTCAAAACGT+CGG - chr6_1:52204611-52204630 Msa0888120:CDS 35.0%
GAAAGAGGAAAAAGGATTTG+TGG + chr6_1:52204717-52204736 None:intergenic 35.0%
GCGTAGAAAATGCTAAACAA+AGG + chr6_1:52204768-52204787 None:intergenic 35.0%
TCAATCACAATGAACAAGCA+TGG + chr6_1:52204832-52204851 None:intergenic 35.0%
CACAACAACAAAGTCAACTT+AGG + chr6_1:52204922-52204941 None:intergenic 35.0%
GAAATTTGACTCTCTAATCG+TGG - chr6_1:52205039-52205058 Msa0888120:intron 35.0%
!!! TGCCTTTGAGATTTTTTGCA+TGG - chr6_1:52205197-52205216 Msa0888120:intron 35.0%
AGTATCCTTAACCAATAGTG+AGG - chr6_1:52205237-52205256 Msa0888120:intron 35.0%
! ATATGCCTCACTATTGGTTA+AGG + chr6_1:52205245-52205264 None:intergenic 35.0%
AGAATGAATTTAAATGGCGG+CGG - chr6_1:52205312-52205331 Msa0888120:intron 35.0%
TGGAACCAAGAGATAAAAGT+AGG - chr6_1:52205457-52205476 Msa0888120:intron 35.0%
ACCAAGAGATAAAAGTAGGA+AGG - chr6_1:52205461-52205480 Msa0888120:intron 35.0%
!! ACCTTCCTACTTTTATCTCT+TGG + chr6_1:52205465-52205484 None:intergenic 35.0%
! ATATTTTATGTGCGTGTGTG+TGG - chr6_1:52205680-52205699 Msa0888120:intron 35.0%
TGTGTGTGGTAATTGAATTG+TGG - chr6_1:52205694-52205713 Msa0888120:intron 35.0%
!! TTAGATTTGTTAAGGAGGGT+TGG - chr6_1:52205835-52205854 Msa0888120:intron 35.0%
!!! GGGTTGGATTTTAGGTTAAT+TGG - chr6_1:52205851-52205870 Msa0888120:intron 35.0%
TTGAGAAAAGATTGTCGTTG+TGG - chr6_1:52205884-52205903 Msa0888120:intron 35.0%
! GTTGTGGTGGAAATAAATTG+AGG - chr6_1:52205900-52205919 Msa0888120:intron 35.0%
TATTGAGGGAAAATTGTTGC+AGG - chr6_1:52205977-52205996 Msa0888120:intron 35.0%
GTTCTTGAGAAGAGGAAATT+AGG - chr6_1:52206039-52206058 Msa0888120:intron 35.0%
!! AGGAAATTAGGGTGGATTTT+GGG - chr6_1:52206051-52206070 Msa0888120:intron 35.0%
!! TTTTGGGGAATTTATGCGAA+CGG - chr6_1:52206067-52206086 Msa0888120:intron 35.0%
TCACATAATGAAATCAGCCT+CGG + chr6_1:52206245-52206264 None:intergenic 35.0%
!!! TTTGCAGCATTTTAACTGAC+TGG - chr6_1:52206324-52206343 Msa0888120:CDS 35.0%
!!! TTGCAGCATTTTAACTGACT+GGG - chr6_1:52206325-52206344 Msa0888120:CDS 35.0%
!! GGGTAATGGAACTTTGAAAA+AGG - chr6_1:52206367-52206386 Msa0888120:CDS 35.0%
TTTCCATCAGCAACTCTAAA+GGG + chr6_1:52206425-52206444 None:intergenic 35.0%
ATTTCCATCAGCAACTCTAA+AGG + chr6_1:52206426-52206445 None:intergenic 35.0%
TAGAGTTGCTGATGGAAATT+TGG - chr6_1:52206427-52206446 Msa0888120:CDS 35.0%
AGAGTTGCTGATGGAAATTT+GGG - chr6_1:52206428-52206447 Msa0888120:CDS 35.0%
TTGGGAAGATTAGTATCTAC+TGG - chr6_1:52206446-52206465 Msa0888120:exon 35.0%
ACAAGCAAATTGTAAATGCC+AGG + chr6_1:52206500-52206519 None:intergenic 35.0%
AAAAACGGTGTGACATTTGT+CGG + chr6_1:52204571-52204590 None:intergenic 35.0%
ATCACACATTCTCAAAACGT+CGG - chr6_1:52204611-52204630 Msa0888120:CDS 35.0%
GAAAGAGGAAAAAGGATTTG+TGG + chr6_1:52204717-52204736 None:intergenic 35.0%
GCGTAGAAAATGCTAAACAA+AGG + chr6_1:52204768-52204787 None:intergenic 35.0%
TCAATCACAATGAACAAGCA+TGG + chr6_1:52204832-52204851 None:intergenic 35.0%
CACAACAACAAAGTCAACTT+AGG + chr6_1:52204922-52204941 None:intergenic 35.0%
GAAATTTGACTCTCTAATCG+TGG - chr6_1:52205039-52205058 Msa0888120:intron 35.0%
!!! TGCCTTTGAGATTTTTTGCA+TGG - chr6_1:52205197-52205216 Msa0888120:intron 35.0%
AGTATCCTTAACCAATAGTG+AGG - chr6_1:52205237-52205256 Msa0888120:intron 35.0%
! ATATGCCTCACTATTGGTTA+AGG + chr6_1:52205245-52205264 None:intergenic 35.0%
AGAATGAATTTAAATGGCGG+CGG - chr6_1:52205312-52205331 Msa0888120:intron 35.0%
TGGAACCAAGAGATAAAAGT+AGG - chr6_1:52205457-52205476 Msa0888120:intron 35.0%
ACCAAGAGATAAAAGTAGGA+AGG - chr6_1:52205461-52205480 Msa0888120:intron 35.0%
!! ACCTTCCTACTTTTATCTCT+TGG + chr6_1:52205465-52205484 None:intergenic 35.0%
! ATATTTTATGTGCGTGTGTG+TGG - chr6_1:52205680-52205699 Msa0888120:intron 35.0%
TGTGTGTGGTAATTGAATTG+TGG - chr6_1:52205694-52205713 Msa0888120:intron 35.0%
!! TTAGATTTGTTAAGGAGGGT+TGG - chr6_1:52205835-52205854 Msa0888120:intron 35.0%
!!! GGGTTGGATTTTAGGTTAAT+TGG - chr6_1:52205851-52205870 Msa0888120:intron 35.0%
TTGAGAAAAGATTGTCGTTG+TGG - chr6_1:52205884-52205903 Msa0888120:intron 35.0%
! GTTGTGGTGGAAATAAATTG+AGG - chr6_1:52205900-52205919 Msa0888120:intron 35.0%
TATTGAGGGAAAATTGTTGC+AGG - chr6_1:52205977-52205996 Msa0888120:intron 35.0%
GTTCTTGAGAAGAGGAAATT+AGG - chr6_1:52206039-52206058 Msa0888120:intron 35.0%
!! AGGAAATTAGGGTGGATTTT+GGG - chr6_1:52206051-52206070 Msa0888120:intron 35.0%
!! TTTTGGGGAATTTATGCGAA+CGG - chr6_1:52206067-52206086 Msa0888120:intron 35.0%
TCACATAATGAAATCAGCCT+CGG + chr6_1:52206245-52206264 None:intergenic 35.0%
!!! TTTGCAGCATTTTAACTGAC+TGG - chr6_1:52206324-52206343 Msa0888120:CDS 35.0%
!!! TTGCAGCATTTTAACTGACT+GGG - chr6_1:52206325-52206344 Msa0888120:CDS 35.0%
!! GGGTAATGGAACTTTGAAAA+AGG - chr6_1:52206367-52206386 Msa0888120:CDS 35.0%
TTTCCATCAGCAACTCTAAA+GGG + chr6_1:52206425-52206444 None:intergenic 35.0%
ATTTCCATCAGCAACTCTAA+AGG + chr6_1:52206426-52206445 None:intergenic 35.0%
TAGAGTTGCTGATGGAAATT+TGG - chr6_1:52206427-52206446 Msa0888120:CDS 35.0%
AGAGTTGCTGATGGAAATTT+GGG - chr6_1:52206428-52206447 Msa0888120:CDS 35.0%
TTGGGAAGATTAGTATCTAC+TGG - chr6_1:52206446-52206465 Msa0888120:exon 35.0%
ACAAGCAAATTGTAAATGCC+AGG + chr6_1:52206500-52206519 None:intergenic 35.0%
AACTCGACTATGAAGAGGAT+TGG + chr6_1:52204517-52204536 None:intergenic 40.0%
!!! GTTTTGAGAATGTGTGATGG+TGG + chr6_1:52204609-52204628 None:intergenic 40.0%
!!! GACGTTTTGAGAATGTGTGA+TGG + chr6_1:52204612-52204631 None:intergenic 40.0%
TCACACATTCTCAAAACGTC+GGG - chr6_1:52204612-52204631 Msa0888120:CDS 40.0%
GCTTCATAGTCGAGTATCTT+TGG - chr6_1:52204655-52204674 Msa0888120:CDS 40.0%
TTCGATCTGCAATGTGAAGT+CGG + chr6_1:52204692-52204711 None:intergenic 40.0%
CTGTGCATGAAAGAGGAAAA+AGG + chr6_1:52204725-52204744 None:intergenic 40.0%
! CTTTTTCCTCTTTCATGCAC+AGG - chr6_1:52204723-52204742 Msa0888120:intron 40.0%
CATAGCATATGCCTCACTAT+TGG + chr6_1:52205251-52205270 None:intergenic 40.0%
GAGGTATAGAGATGTCAAAG+TGG - chr6_1:52205376-52205395 Msa0888120:intron 40.0%
TAAACAAAGGGAATGCAACC+AGG - chr6_1:52205417-52205436 Msa0888120:intron 40.0%
AAACAAAGGGAATGCAACCA+GGG - chr6_1:52205418-52205437 Msa0888120:intron 40.0%
TATCTCTTGGTTCCACTACT+TGG + chr6_1:52205452-52205471 None:intergenic 40.0%
CGATTTACCTTGTTCTGTTC+TGG - chr6_1:52205609-52205628 Msa0888120:intron 40.0%
ATTAGTACACTAGGGAATGG+TGG - chr6_1:52205761-52205780 Msa0888120:intron 40.0%
! GTTAAGGAGGGTTGGATTTT+AGG - chr6_1:52205843-52205862 Msa0888120:intron 40.0%
AGAAAAGATTGTCGTTGTGG+TGG - chr6_1:52205887-52205906 Msa0888120:intron 40.0%
TTGAGGTAACTATCCTGAGT+TGG - chr6_1:52205917-52205936 Msa0888120:intron 40.0%
TGAGAAGAGAATGCATATGG+AGG - chr6_1:52205947-52205966 Msa0888120:intron 40.0%
!! AGTTGATGGTTCTTGAGAAG+AGG - chr6_1:52206031-52206050 Msa0888120:intron 40.0%
TTGAGAAGAGGAAATTAGGG+TGG - chr6_1:52206043-52206062 Msa0888120:intron 40.0%
!! GAGGAAATTAGGGTGGATTT+TGG - chr6_1:52206050-52206069 Msa0888120:intron 40.0%
!! GGAAATTAGGGTGGATTTTG+GGG - chr6_1:52206052-52206071 Msa0888120:intron 40.0%
! GAGGCTGATTTCATTATGTG+AGG - chr6_1:52206244-52206263 Msa0888120:intron 40.0%
!!! TGCAGCATTTTAACTGACTG+GGG - chr6_1:52206326-52206345 Msa0888120:CDS 40.0%
GGTAAACACAGCAAAGTGAT+GGG - chr6_1:52206347-52206366 Msa0888120:CDS 40.0%
! TGAAGCACTCCTTGATAGAA+TGG - chr6_1:52206394-52206413 Msa0888120:CDS 40.0%
! GAAGCACTCCTTGATAGAAT+GGG - chr6_1:52206395-52206414 Msa0888120:CDS 40.0%
AGTATCTACTGGAGATTTGG+TGG - chr6_1:52206457-52206476 Msa0888120:five_prime_UTR 40.0%
AACTCGACTATGAAGAGGAT+TGG + chr6_1:52204517-52204536 None:intergenic 40.0%
!!! GTTTTGAGAATGTGTGATGG+TGG + chr6_1:52204609-52204628 None:intergenic 40.0%
!!! GACGTTTTGAGAATGTGTGA+TGG + chr6_1:52204612-52204631 None:intergenic 40.0%
TCACACATTCTCAAAACGTC+GGG - chr6_1:52204612-52204631 Msa0888120:CDS 40.0%
GCTTCATAGTCGAGTATCTT+TGG - chr6_1:52204655-52204674 Msa0888120:CDS 40.0%
TTCGATCTGCAATGTGAAGT+CGG + chr6_1:52204692-52204711 None:intergenic 40.0%
CTGTGCATGAAAGAGGAAAA+AGG + chr6_1:52204725-52204744 None:intergenic 40.0%
! CTTTTTCCTCTTTCATGCAC+AGG - chr6_1:52204723-52204742 Msa0888120:intron 40.0%
CATAGCATATGCCTCACTAT+TGG + chr6_1:52205251-52205270 None:intergenic 40.0%
GAGGTATAGAGATGTCAAAG+TGG - chr6_1:52205376-52205395 Msa0888120:intron 40.0%
TAAACAAAGGGAATGCAACC+AGG - chr6_1:52205417-52205436 Msa0888120:intron 40.0%
AAACAAAGGGAATGCAACCA+GGG - chr6_1:52205418-52205437 Msa0888120:intron 40.0%
TATCTCTTGGTTCCACTACT+TGG + chr6_1:52205452-52205471 None:intergenic 40.0%
CGATTTACCTTGTTCTGTTC+TGG - chr6_1:52205609-52205628 Msa0888120:intron 40.0%
ATTAGTACACTAGGGAATGG+TGG - chr6_1:52205761-52205780 Msa0888120:intron 40.0%
! GTTAAGGAGGGTTGGATTTT+AGG - chr6_1:52205843-52205862 Msa0888120:intron 40.0%
AGAAAAGATTGTCGTTGTGG+TGG - chr6_1:52205887-52205906 Msa0888120:intron 40.0%
TTGAGGTAACTATCCTGAGT+TGG - chr6_1:52205917-52205936 Msa0888120:intron 40.0%
TGAGAAGAGAATGCATATGG+AGG - chr6_1:52205947-52205966 Msa0888120:intron 40.0%
!! AGTTGATGGTTCTTGAGAAG+AGG - chr6_1:52206031-52206050 Msa0888120:intron 40.0%
TTGAGAAGAGGAAATTAGGG+TGG - chr6_1:52206043-52206062 Msa0888120:intron 40.0%
!! GAGGAAATTAGGGTGGATTT+TGG - chr6_1:52206050-52206069 Msa0888120:intron 40.0%
!! GGAAATTAGGGTGGATTTTG+GGG - chr6_1:52206052-52206071 Msa0888120:intron 40.0%
! GAGGCTGATTTCATTATGTG+AGG - chr6_1:52206244-52206263 Msa0888120:intron 40.0%
!!! TGCAGCATTTTAACTGACTG+GGG - chr6_1:52206326-52206345 Msa0888120:CDS 40.0%
GGTAAACACAGCAAAGTGAT+GGG - chr6_1:52206347-52206366 Msa0888120:CDS 40.0%
! TGAAGCACTCCTTGATAGAA+TGG - chr6_1:52206394-52206413 Msa0888120:CDS 40.0%
! GAAGCACTCCTTGATAGAAT+GGG - chr6_1:52206395-52206414 Msa0888120:CDS 40.0%
AGTATCTACTGGAGATTTGG+TGG - chr6_1:52206457-52206476 Msa0888120:five_prime_UTR 40.0%
TGAAGAGGATTGGAACTCGA+TGG + chr6_1:52204507-52204526 None:intergenic 45.0%
GGTGAAACTCGACTATGAAG+AGG + chr6_1:52204522-52204541 None:intergenic 45.0%
AGGGTGAGAAGGGTGAAAAA+CGG + chr6_1:52204586-52204605 None:intergenic 45.0%
!! TGAGAATGTGTGATGGTGGA+GGG + chr6_1:52204605-52204624 None:intergenic 45.0%
!! TTGAGAATGTGTGATGGTGG+AGG + chr6_1:52204606-52204625 None:intergenic 45.0%
ACTCGACTATGAAGCTCGAT+CGG + chr6_1:52204650-52204669 None:intergenic 45.0%
ACGTTACCTGTGCATGAAAG+AGG + chr6_1:52204732-52204751 None:intergenic 45.0%
ACATTGCTCTCGTGAATCAG+AGG - chr6_1:52205357-52205376 Msa0888120:intron 45.0%
AGGGAAAATTGTTGCAGGTG+TGG - chr6_1:52205982-52206001 Msa0888120:intron 45.0%
GGTGTGGTTGAAACGAATTG+AGG - chr6_1:52205998-52206017 Msa0888120:intron 45.0%
GCTCAAAAGACCTCACCTAA+CGG - chr6_1:52206120-52206139 Msa0888120:intron 45.0%
AACCAACAAACCGTTAGGTG+AGG + chr6_1:52206133-52206152 None:intergenic 45.0%
GGGTAAACACAGCAAAGTGA+TGG - chr6_1:52206346-52206365 Msa0888120:CDS 45.0%
!! CACAGCAAAGTGATGGGTAA+TGG - chr6_1:52206353-52206372 Msa0888120:CDS 45.0%
AGGGTGATCCCATTCTATCA+AGG + chr6_1:52206406-52206425 None:intergenic 45.0%
!! TCACCCTTTAGAGTTGCTGA+TGG - chr6_1:52206419-52206438 Msa0888120:CDS 45.0%
TGAAGAGGATTGGAACTCGA+TGG + chr6_1:52204507-52204526 None:intergenic 45.0%
GGTGAAACTCGACTATGAAG+AGG + chr6_1:52204522-52204541 None:intergenic 45.0%
AGGGTGAGAAGGGTGAAAAA+CGG + chr6_1:52204586-52204605 None:intergenic 45.0%
!! TGAGAATGTGTGATGGTGGA+GGG + chr6_1:52204605-52204624 None:intergenic 45.0%
!! TTGAGAATGTGTGATGGTGG+AGG + chr6_1:52204606-52204625 None:intergenic 45.0%
ACTCGACTATGAAGCTCGAT+CGG + chr6_1:52204650-52204669 None:intergenic 45.0%
ACGTTACCTGTGCATGAAAG+AGG + chr6_1:52204732-52204751 None:intergenic 45.0%
ACATTGCTCTCGTGAATCAG+AGG - chr6_1:52205357-52205376 Msa0888120:intron 45.0%
AGGGAAAATTGTTGCAGGTG+TGG - chr6_1:52205982-52206001 Msa0888120:intron 45.0%
GGTGTGGTTGAAACGAATTG+AGG - chr6_1:52205998-52206017 Msa0888120:intron 45.0%
GCTCAAAAGACCTCACCTAA+CGG - chr6_1:52206120-52206139 Msa0888120:intron 45.0%
AACCAACAAACCGTTAGGTG+AGG + chr6_1:52206133-52206152 None:intergenic 45.0%
GGGTAAACACAGCAAAGTGA+TGG - chr6_1:52206346-52206365 Msa0888120:CDS 45.0%
!! CACAGCAAAGTGATGGGTAA+TGG - chr6_1:52206353-52206372 Msa0888120:CDS 45.0%
AGGGTGATCCCATTCTATCA+AGG + chr6_1:52206406-52206425 None:intergenic 45.0%
!! TCACCCTTTAGAGTTGCTGA+TGG - chr6_1:52206419-52206438 Msa0888120:CDS 45.0%
!!! ATTTTTTTTTTTTTAAACAA+AGG - chr6_1:52205404-52205423 Msa0888120:intron 5.0%
!!! TTTTTTTTTTTTTAAACAAA+GGG - chr6_1:52205405-52205424 Msa0888120:intron 5.0%
!!! ATTTTTTTTTTTTTAAACAA+AGG - chr6_1:52205404-52205423 Msa0888120:intron 5.0%
!!! TTTTTTTTTTTTTAAACAAA+GGG - chr6_1:52205405-52205424 Msa0888120:intron 5.0%
AGAGGATTGGAACTCGATGG+TGG + chr6_1:52204504-52204523 None:intergenic 50.0%
AAAGGGAATGCAACCAGGGA+GGG - chr6_1:52205422-52205441 Msa0888120:intron 50.0%
GACCTCACCTAACGGTTTGT+TGG - chr6_1:52206128-52206147 Msa0888120:intron 50.0%
AAGTGTTTCCTCCTCCCAGA+CGG + chr6_1:52206210-52206229 None:intergenic 50.0%
CACTTGTGTACATTCGTCCG+AGG - chr6_1:52206225-52206244 Msa0888120:intron 50.0%
! GAGGCTGATTTCATTGTCCG+AGG - chr6_1:52206263-52206282 Msa0888120:intron 50.0%
!! CTGGAGATTTGGTGGCTACT+TGG - chr6_1:52206465-52206484 Msa0888120:five_prime_UTR 50.0%
GCTACTTGGCTGAAACAACC+TGG - chr6_1:52206479-52206498 Msa0888120:five_prime_UTR 50.0%
AGAGGATTGGAACTCGATGG+TGG + chr6_1:52204504-52204523 None:intergenic 50.0%
AAAGGGAATGCAACCAGGGA+GGG - chr6_1:52205422-52205441 Msa0888120:intron 50.0%
GACCTCACCTAACGGTTTGT+TGG - chr6_1:52206128-52206147 Msa0888120:intron 50.0%
AAGTGTTTCCTCCTCCCAGA+CGG + chr6_1:52206210-52206229 None:intergenic 50.0%
CACTTGTGTACATTCGTCCG+AGG - chr6_1:52206225-52206244 Msa0888120:intron 50.0%
! GAGGCTGATTTCATTGTCCG+AGG - chr6_1:52206263-52206282 Msa0888120:intron 50.0%
!! CTGGAGATTTGGTGGCTACT+TGG - chr6_1:52206465-52206484 Msa0888120:five_prime_UTR 50.0%
GCTACTTGGCTGAAACAACC+TGG - chr6_1:52206479-52206498 Msa0888120:five_prime_UTR 50.0%
! ATGGTGGAGGAATGCGATGG+CGG + chr6_1:52204488-52204507 None:intergenic 55.0%
!! TCGATGGTGGAGGAATGCGA+TGG + chr6_1:52204491-52204510 None:intergenic 55.0%
! GGATTGGAACTCGATGGTGG+AGG + chr6_1:52204501-52204520 None:intergenic 55.0%
!! GTGATGGTGGAGGGTGAGAA+GGG + chr6_1:52204596-52204615 None:intergenic 55.0%
!! TGTGATGGTGGAGGGTGAGA+AGG + chr6_1:52204597-52204616 None:intergenic 55.0%
CAAAGGGAATGCAACCAGGG+AGG - chr6_1:52205421-52205440 Msa0888120:intron 55.0%
GTACACTAGGGAATGGTGGC+TGG - chr6_1:52205765-52205784 Msa0888120:intron 55.0%
AGACGGCGACTTACAGACTC+CGG + chr6_1:52206193-52206212 None:intergenic 55.0%
GAGTCTGTAAGTCGCCGTCT+GGG - chr6_1:52206193-52206212 Msa0888120:intron 55.0%
! ATGGTGGAGGAATGCGATGG+CGG + chr6_1:52204488-52204507 None:intergenic 55.0%
!! TCGATGGTGGAGGAATGCGA+TGG + chr6_1:52204491-52204510 None:intergenic 55.0%
! GGATTGGAACTCGATGGTGG+AGG + chr6_1:52204501-52204520 None:intergenic 55.0%
!! GTGATGGTGGAGGGTGAGAA+GGG + chr6_1:52204596-52204615 None:intergenic 55.0%
!! TGTGATGGTGGAGGGTGAGA+AGG + chr6_1:52204597-52204616 None:intergenic 55.0%
CAAAGGGAATGCAACCAGGG+AGG - chr6_1:52205421-52205440 Msa0888120:intron 55.0%
GTACACTAGGGAATGGTGGC+TGG - chr6_1:52205765-52205784 Msa0888120:intron 55.0%
AGACGGCGACTTACAGACTC+CGG + chr6_1:52206193-52206212 None:intergenic 55.0%
GAGTCTGTAAGTCGCCGTCT+GGG - chr6_1:52206193-52206212 Msa0888120:intron 55.0%
TGGTGGAGGAATGCGATGGC+GGG + chr6_1:52204487-52204506 None:intergenic 60.0%
!! ACTACTTGGTGCACCCTCCC+TGG + chr6_1:52205438-52205457 None:intergenic 60.0%
! AGGGAGGGTGCACCAAGTAG+TGG - chr6_1:52205437-52205456 Msa0888120:intron 60.0%
GGAGTCTGTAAGTCGCCGTC+TGG - chr6_1:52206192-52206211 Msa0888120:intron 60.0%
TCTGTAAGTCGCCGTCTGGG+AGG - chr6_1:52206196-52206215 Msa0888120:intron 60.0%
TGGTGGAGGAATGCGATGGC+GGG + chr6_1:52204487-52204506 None:intergenic 60.0%
!! ACTACTTGGTGCACCCTCCC+TGG + chr6_1:52205438-52205457 None:intergenic 60.0%
! AGGGAGGGTGCACCAAGTAG+TGG - chr6_1:52205437-52205456 Msa0888120:intron 60.0%
GGAGTCTGTAAGTCGCCGTC+TGG - chr6_1:52206192-52206211 Msa0888120:intron 60.0%
TCTGTAAGTCGCCGTCTGGG+AGG - chr6_1:52206196-52206215 Msa0888120:intron 60.0%
GTAAGTCGCCGTCTGGGAGG+AGG - chr6_1:52206199-52206218 Msa0888120:intron 65.0%
GTAAGTCGCCGTCTGGGAGG+AGG - chr6_1:52206199-52206218 Msa0888120:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 52204484 52206538 52204484 ID=Msa0888120;Name=Msa0888120
chr6_1 mRNA 52204484 52206538 52204484 ID=Msa0888120-mRNA-1;Parent=Msa0888120;Name=Msa0888120-mRNA-1;_AED=0.00;_eAED=0.00;_QI=91|1|0.5|1|1|1|2|0|126
chr6_1 exon 52204484 52204691 52204484 ID=Msa0888120-mRNA-1:exon:10513;Parent=Msa0888120-mRNA-1
chr6_1 exon 52206278 52206538 52206278 ID=Msa0888120-mRNA-1:exon:10512;Parent=Msa0888120-mRNA-1
chr6_1 five_prime_UTR 52206448 52206538 52206448 ID=Msa0888120-mRNA-1:five_prime_utr;Parent=Msa0888120-mRNA-1
chr6_1 CDS 52206278 52206447 52206278 ID=Msa0888120-mRNA-1:cds;Parent=Msa0888120-mRNA-1
chr6_1 CDS 52204484 52204691 52204484 ID=Msa0888120-mRNA-1:cds;Parent=Msa0888120-mRNA-1
Gene Sequence

>Msa0888120

ATGTCACACCGTTTTTCACCCTTCTCACCCTCCACCATCACACATTCTCAAAACGTCGGGCTTCACACTTCACCGATCGAGCTTCATAGTCGAGTATCTTTGGAACTTTATCATCCGACTTCACATTGCAGATCGAATTCCACAAATCCTTTTTCCTCTTTCATGCACAGCATTTTAACTGACTGGGGTAAACACAGCAAAGTGATGGGTAATGGAACTTTGAAAAAGGCTGTTGAAGCACTCCTTGATAGAATGGGATCACCCTTTAGAGTTGCTGATGGAAATTTGGGAAGATTAGTATCTACTGGAGATTTGGTGGCTACTTGGCTGAAACAACCTGGCATTTACAATTTGCTTGTTCTGCATGATGTCATCAAT

Protein sequence

>Msa0888120

MSHRFSPFSPSTITHSQNVGLHTSPIELHSRVSLELYHPTSHCRSNSTNPFSSFMHSILTDWGKHSKVMGNGTLKKAVEALLDRMGSPFRVADGNLGRLVSTGDLVATWLKQPGIYNLLVLHDVIN