Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0942260 | G7IIE5 | 74.390 | 246 | 24 | 2 | 1 | 207 | 1 | 246 | 1.53e-116 | 358 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0084440 | Msa0942260 | 0.809939 | 1.476762e-50 | -8.615850e-47 |
| Msa0737340 | Msa0942260 | 0.815692 | 8.117545e-52 | -8.615850e-47 |
| Msa0392140 | Msa0942260 | 0.820513 | 6.593422e-53 | -8.615850e-47 |
| Msa0393590 | Msa0942260 | 0.828669 | 7.905304e-55 | -8.615850e-47 |
| Msa0248130 | Msa0942260 | 0.829958 | 3.845509e-55 | -8.615850e-47 |
| Msa0319860 | Msa0942260 | 0.817385 | 3.389095e-52 | -8.615850e-47 |
| Msa0888120 | Msa0942260 | 0.828657 | 7.958313e-55 | -8.615850e-47 |
| Msa0942260 | Msa1021910 | 0.800802 | 1.214587e-48 | -8.615850e-47 |
| Msa0942260 | Msa1106050 | 0.811130 | 8.167166e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0942260 | MtrunA17_Chr1g0193281 | 45.641 | 195 | 67 | 2 | 1 | 156 | 1 | 195 | 1.20e-53 | 172 |
| Msa0942260 | MtrunA17_Chr7g0270401 | 37.344 | 241 | 107 | 3 | 1 | 202 | 1 | 236 | 2.47e-48 | 161 |
| Msa0942260 | MtrunA17_Chr1g0206471 | 34.082 | 267 | 123 | 7 | 9 | 231 | 10 | 267 | 3.85e-40 | 140 |
| Msa0942260 | MtrunA17_Chr1g0207921 | 44.954 | 109 | 25 | 2 | 12 | 85 | 9 | 117 | 1.70e-21 | 89.0 |
| Msa0942260 | MtrunA17_Chr5g0423431 | 55.556 | 63 | 28 | 0 | 1 | 63 | 1 | 63 | 1.06e-19 | 80.9 |
| Msa0942260 | MtrunA17_Chr8g0361581 | 57.143 | 63 | 27 | 0 | 1 | 63 | 1 | 63 | 2.42e-19 | 82.8 |
| Msa0942260 | MtrunA17_Chr7g0237161 | 52.381 | 63 | 30 | 0 | 139 | 201 | 3 | 65 | 2.70e-18 | 77.4 |
| Msa0942260 | MtrunA17_Chr4g0055111 | 62.500 | 48 | 18 | 0 | 1 | 48 | 1 | 48 | 3.03e-16 | 71.2 |
| Msa0942260 | MtrunA17_Chr6g0478391 | 62.500 | 48 | 18 | 0 | 1 | 48 | 1 | 48 | 6.20e-16 | 71.2 |
| Msa0942260 | MtrunA17_Chr7g0228461 | 47.692 | 65 | 24 | 2 | 63 | 117 | 45 | 109 | 3.73e-14 | 68.6 |
| Msa0942260 | MtrunA17_Chr6g0474771 | 61.905 | 42 | 16 | 0 | 9 | 50 | 1 | 42 | 7.51e-14 | 64.3 |
| Msa0942260 | MtrunA17_Chr5g0421721 | 43.077 | 65 | 37 | 0 | 1 | 65 | 1 | 65 | 1.17e-11 | 59.7 |
| Msa0942260 | MtrunA17_Chr5g0429611 | 55.319 | 47 | 21 | 0 | 16 | 62 | 41 | 87 | 2.39e-11 | 58.9 |
| Msa0942260 | MtrunA17_Chr8g0359311 | 54.348 | 46 | 21 | 0 | 157 | 202 | 18 | 63 | 7.12e-11 | 57.8 |
| Msa0942260 | MtrunA17_Chr6g0473661 | 32.258 | 155 | 77 | 4 | 63 | 208 | 301 | 436 | 8.17e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 49 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATTCCCTTGATATTATT+TGG | 0.108207 | 6_3:-16845740 | Msa0942260:CDS |
| AGGAAGATGTGCTCAGATTT+TGG | 0.216356 | 6_3:-16846310 | Msa0942260:CDS |
| CCTTATGAGTACTGCAAGAT+AGG | 0.295867 | 6_3:-16846210 | Msa0942260:CDS |
| TGATGTTAGCAAAGGATCTT+TGG | 0.309769 | 6_3:-16846429 | Msa0942260:intron |
| GCTATGTTTGCCAATGATTT+CGG | 0.331331 | 6_3:-16846805 | Msa0942260:intron |
| TCTGTTACGTGGCTGGGCTA+TGG | 0.380837 | 6_3:-16845766 | Msa0942260:CDS |
| ACACATCGTTGAACTCTTGA+TGG | 0.385688 | 6_3:-16847124 | Msa0942260:CDS |
| TGGGACTGCGTGTTGATGTT+TGG | 0.394844 | 6_3:-16846240 | Msa0942260:CDS |
| CTGTTACGTGGCTGGGCTAT+GGG | 0.411322 | 6_3:-16845765 | Msa0942260:CDS |
| ATGGCTTTCCACAGCTTGAC+TGG | 0.417445 | 6_3:-16847105 | Msa0942260:intron |
| GATCTTGTCACCGAAATCAT+TGG | 0.418163 | 6_3:+16846795 | None:intergenic |
| CCTATCTTGCAGTACTCATA+AGG | 0.450704 | 6_3:+16846210 | None:intergenic |
| GATAGAGCAGATGGAAATGG+TGG | 0.454882 | 6_3:+16846509 | None:intergenic |
| CTGAAATCCAAATAATATCA+AGG | 0.456824 | 6_3:+16845733 | None:intergenic |
| TCAATCACAAATCGCATGCT+TGG | 0.460044 | 6_3:+16846569 | None:intergenic |
| ACGGTATAGGTTTAGGAGCA+TGG | 0.464618 | 6_3:-16846661 | Msa0942260:CDS |
| ATAGGTTTGGAAAGAATGTA+AGG | 0.474403 | 6_3:-16846607 | Msa0942260:CDS |
| TTGCAATGGCTGTGAAAGAT+AGG | 0.477982 | 6_3:-16846625 | Msa0942260:CDS |
| CGGTATAGGTTTAGGAGCAT+GGG | 0.485027 | 6_3:-16846660 | Msa0942260:CDS |
| GCCTTGTCCAGCTCACAAAC+AGG | 0.493837 | 6_3:+16846990 | None:intergenic |
| CTTATGAGTACTGCAAGATA+GGG | 0.495075 | 6_3:-16846209 | Msa0942260:CDS |
| TTTAGGAGCATGGGTTACCT+TGG | 0.497963 | 6_3:-16846651 | Msa0942260:CDS |
| TAAGATAGAGCAGATGGAAA+TGG | 0.500390 | 6_3:+16846506 | None:intergenic |
| AAATCATTGGCAAACATAGC+TGG | 0.507332 | 6_3:+16846808 | None:intergenic |
| TGTCAGATGCTTAGGTATGA+AGG | 0.515085 | 6_3:-16846330 | Msa0942260:intron |
| TGACGATAAGATAGAGCAGA+TGG | 0.521665 | 6_3:+16846500 | None:intergenic |
| GGATGATTGTGGAAACTGTT+GGG | 0.523266 | 6_3:-16846259 | Msa0942260:CDS |
| ATGGCTGTGAAAGATAGGTT+TGG | 0.523518 | 6_3:-16846620 | Msa0942260:CDS |
| GGTTACCTTGGTGTTTGCAA+TGG | 0.528063 | 6_3:-16846639 | Msa0942260:CDS |
| CGTTGAGTATGACGTCGAGC+AGG | 0.536534 | 6_3:-16846931 | Msa0942260:intron |
| GGGAGGTCATTGTTGAATTG+TGG | 0.541048 | 6_3:+16846530 | None:intergenic |
| GTGAAGATGGTGGATGATTG+TGG | 0.544128 | 6_3:-16846270 | Msa0942260:CDS |
| TCCTGTTTGTGAGCTGGACA+AGG | 0.562164 | 6_3:-16846991 | Msa0942260:CDS |
| GAACGATCCTGTTTGTGAGC+TGG | 0.563868 | 6_3:-16846997 | Msa0942260:CDS |
| CGATGCTACAACTGTGAAGA+TGG | 0.568720 | 6_3:-16846283 | Msa0942260:CDS |
| GCTGCAGGTGGTATCAGCAG+TGG | 0.570293 | 6_3:-16845871 | Msa0942260:CDS |
| TGAAATCCAAATAATATCAA+GGG | 0.584992 | 6_3:+16845734 | None:intergenic |
| TTATGAGTACTGCAAGATAG+GGG | 0.592423 | 6_3:-16846208 | Msa0942260:CDS |
| ATAGAGCAGATGGAAATGGT+GGG | 0.594718 | 6_3:+16846510 | None:intergenic |
| CATACTCAACGATGTACGTC+CGG | 0.597685 | 6_3:+16846943 | None:intergenic |
| ACAAGCTAAGACTGAAGTAC+CGG | 0.600606 | 6_3:-16846962 | Msa0942260:CDS |
| TATCCATACCAGTCAAGCTG+TGG | 0.602300 | 6_3:+16847097 | None:intergenic |
| AATCAACAAACCAGAAAACC+AGG | 0.603740 | 6_3:+16845832 | None:intergenic |
| ACTGATCATGATGTTAGCAA+AGG | 0.630338 | 6_3:-16846437 | Msa0942260:CDS |
| CACAGCCATTGCAAACACCA+AGG | 0.657225 | 6_3:+16846634 | None:intergenic |
| TATGAGTACTGCAAGATAGG+GGG | 0.659174 | 6_3:-16846207 | Msa0942260:CDS |
| TGGATGATTGTGGAAACTGT+TGG | 0.672908 | 6_3:-16846260 | Msa0942260:CDS |
| GAGCAGATGGAAATGGTGGG+AGG | 0.685142 | 6_3:+16846513 | None:intergenic |
| TGCTACAACTGTGAAGATGG+TGG | 0.697321 | 6_3:-16846280 | Msa0942260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGAAAAAATATTAAAACA+CGG | + | chr6_3:16846004-16846023 | None:intergenic | 10.0% |
| !! | TAAGAAAAAATATTAAAACA+CGG | + | chr6_3:16846004-16846023 | None:intergenic | 10.0% |
| !! | AAAGAATTGAATATAATGAA+AGG | + | chr6_3:16845791-16845810 | None:intergenic | 15.0% |
| !!! | TATTTTTTCTTATCTTTTGT+AGG | - | chr6_3:16846012-16846031 | Msa0942260:intron | 15.0% |
| !!! | ATTTTTTCTTATCTTTTGTA+GGG | - | chr6_3:16846013-16846032 | Msa0942260:intron | 15.0% |
| !! | AAAGAATTGAATATAATGAA+AGG | + | chr6_3:16845791-16845810 | None:intergenic | 15.0% |
| !!! | TATTTTTTCTTATCTTTTGT+AGG | - | chr6_3:16846012-16846031 | Msa0942260:intron | 15.0% |
| !!! | ATTTTTTCTTATCTTTTGTA+GGG | - | chr6_3:16846013-16846032 | Msa0942260:intron | 15.0% |
| !!! | TTTTCACAAAATCAATATGT+TGG | + | chr6_3:16846395-16846414 | None:intergenic | 20.0% |
| !! | TGAAATCCAAATAATATCAA+GGG | + | chr6_3:16847126-16847145 | None:intergenic | 20.0% |
| !!! | TTTTCACAAAATCAATATGT+TGG | + | chr6_3:16846395-16846414 | None:intergenic | 20.0% |
| !! | TGAAATCCAAATAATATCAA+GGG | + | chr6_3:16847126-16847145 | None:intergenic | 20.0% |
| ! | ACTTCGAATTGATTATTCTT+AGG | + | chr6_3:16846111-16846130 | None:intergenic | 25.0% |
| ! | TTTGAAAAGATAACAGTGTA+GGG | - | chr6_3:16846862-16846881 | Msa0942260:intron | 25.0% |
| ! | TGAATTCCCTTGATATTATT+TGG | - | chr6_3:16847117-16847136 | Msa0942260:CDS | 25.0% |
| ! | CTGAAATCCAAATAATATCA+AGG | + | chr6_3:16847127-16847146 | None:intergenic | 25.0% |
| ! | ACTTCGAATTGATTATTCTT+AGG | + | chr6_3:16846111-16846130 | None:intergenic | 25.0% |
| ! | TTTGAAAAGATAACAGTGTA+GGG | - | chr6_3:16846862-16846881 | Msa0942260:intron | 25.0% |
| ! | TGAATTCCCTTGATATTATT+TGG | - | chr6_3:16847117-16847136 | Msa0942260:CDS | 25.0% |
| ! | CTGAAATCCAAATAATATCA+AGG | + | chr6_3:16847127-16847146 | None:intergenic | 25.0% |
| ACAGAAACGTAAACAGAAAA+AGG | + | chr6_3:16845816-16845835 | None:intergenic | 30.0% | |
| !! | TTTCTGTTCGTTTTTCCTTA+GGG | - | chr6_3:16845829-16845848 | Msa0942260:intron | 30.0% |
| GAATAATCAATTCGAAGTGT+TGG | - | chr6_3:16846113-16846132 | Msa0942260:intron | 30.0% | |
| TATACCGTAAAAATCACGAA+GGG | + | chr6_3:16846184-16846203 | None:intergenic | 30.0% | |
| ! | GATTTTTACGGTATAGGTTT+AGG | - | chr6_3:16846189-16846208 | Msa0942260:intron | 30.0% |
| ATAGGTTTGGAAAGAATGTA+AGG | - | chr6_3:16846250-16846269 | Msa0942260:CDS | 30.0% | |
| !! | AATGTAAGGTGTCCAATTTT+TGG | - | chr6_3:16846264-16846283 | Msa0942260:CDS | 30.0% |
| GTTTGAAAAGATAACAGTGT+AGG | - | chr6_3:16846861-16846880 | Msa0942260:intron | 30.0% | |
| TTGAAAAGATAACAGTGTAG+GGG | - | chr6_3:16846863-16846882 | Msa0942260:intron | 30.0% | |
| ACAGAAACGTAAACAGAAAA+AGG | + | chr6_3:16845816-16845835 | None:intergenic | 30.0% | |
| !! | TTTCTGTTCGTTTTTCCTTA+GGG | - | chr6_3:16845829-16845848 | Msa0942260:intron | 30.0% |
| GAATAATCAATTCGAAGTGT+TGG | - | chr6_3:16846113-16846132 | Msa0942260:intron | 30.0% | |
| TATACCGTAAAAATCACGAA+GGG | + | chr6_3:16846184-16846203 | None:intergenic | 30.0% | |
| ! | GATTTTTACGGTATAGGTTT+AGG | - | chr6_3:16846189-16846208 | Msa0942260:intron | 30.0% |
| ATAGGTTTGGAAAGAATGTA+AGG | - | chr6_3:16846250-16846269 | Msa0942260:CDS | 30.0% | |
| !! | AATGTAAGGTGTCCAATTTT+TGG | - | chr6_3:16846264-16846283 | Msa0942260:CDS | 30.0% |
| GTTTGAAAAGATAACAGTGT+AGG | - | chr6_3:16846861-16846880 | Msa0942260:intron | 30.0% | |
| TTGAAAAGATAACAGTGTAG+GGG | - | chr6_3:16846863-16846882 | Msa0942260:intron | 30.0% | |
| !! | GTTTCTGTTCGTTTTTCCTT+AGG | - | chr6_3:16845828-16845847 | Msa0942260:intron | 35.0% |
| !! | TTCTGTTCGTTTTTCCTTAG+GGG | - | chr6_3:16845830-16845849 | Msa0942260:intron | 35.0% |
| AAATCATTGGCAAACATAGC+TGG | + | chr6_3:16846052-16846071 | None:intergenic | 35.0% | |
| GCTATGTTTGCCAATGATTT+CGG | - | chr6_3:16846052-16846071 | Msa0942260:intron | 35.0% | |
| CTATACCGTAAAAATCACGA+AGG | + | chr6_3:16846185-16846204 | None:intergenic | 35.0% | |
| ! | CTTCGTGATTTTTACGGTAT+AGG | - | chr6_3:16846183-16846202 | Msa0942260:intron | 35.0% |
| TAAGATAGAGCAGATGGAAA+TGG | + | chr6_3:16846354-16846373 | None:intergenic | 35.0% | |
| ACTGATCATGATGTTAGCAA+AGG | - | chr6_3:16846420-16846439 | Msa0942260:intron | 35.0% | |
| TGATGTTAGCAAAGGATCTT+TGG | - | chr6_3:16846428-16846447 | Msa0942260:intron | 35.0% | |
| ! | CTTATGAGTACTGCAAGATA+GGG | - | chr6_3:16846648-16846667 | Msa0942260:CDS | 35.0% |
| ! | TTATGAGTACTGCAAGATAG+GGG | - | chr6_3:16846649-16846668 | Msa0942260:CDS | 35.0% |
| !!! | AACAGTGTAGGGGTTTTTTT+TGG | - | chr6_3:16846873-16846892 | Msa0942260:intron | 35.0% |
| !!! | TGATTTTGGGTCTGTTTCTA+TGG | - | chr6_3:16846919-16846938 | Msa0942260:intron | 35.0% |
| !! | TTTTATGCTTCCTGGTTTTC+TGG | - | chr6_3:16847015-16847034 | Msa0942260:intron | 35.0% |
| AATCAACAAACCAGAAAACC+AGG | + | chr6_3:16847028-16847047 | None:intergenic | 35.0% | |
| !! | GTTTCTGTTCGTTTTTCCTT+AGG | - | chr6_3:16845828-16845847 | Msa0942260:intron | 35.0% |
| !! | TTCTGTTCGTTTTTCCTTAG+GGG | - | chr6_3:16845830-16845849 | Msa0942260:intron | 35.0% |
| AAATCATTGGCAAACATAGC+TGG | + | chr6_3:16846052-16846071 | None:intergenic | 35.0% | |
| GCTATGTTTGCCAATGATTT+CGG | - | chr6_3:16846052-16846071 | Msa0942260:intron | 35.0% | |
| CTATACCGTAAAAATCACGA+AGG | + | chr6_3:16846185-16846204 | None:intergenic | 35.0% | |
| ! | CTTCGTGATTTTTACGGTAT+AGG | - | chr6_3:16846183-16846202 | Msa0942260:intron | 35.0% |
| TAAGATAGAGCAGATGGAAA+TGG | + | chr6_3:16846354-16846373 | None:intergenic | 35.0% | |
| ACTGATCATGATGTTAGCAA+AGG | - | chr6_3:16846420-16846439 | Msa0942260:intron | 35.0% | |
| TGATGTTAGCAAAGGATCTT+TGG | - | chr6_3:16846428-16846447 | Msa0942260:intron | 35.0% | |
| ! | CTTATGAGTACTGCAAGATA+GGG | - | chr6_3:16846648-16846667 | Msa0942260:CDS | 35.0% |
| ! | TTATGAGTACTGCAAGATAG+GGG | - | chr6_3:16846649-16846668 | Msa0942260:CDS | 35.0% |
| !!! | AACAGTGTAGGGGTTTTTTT+TGG | - | chr6_3:16846873-16846892 | Msa0942260:intron | 35.0% |
| !!! | TGATTTTGGGTCTGTTTCTA+TGG | - | chr6_3:16846919-16846938 | Msa0942260:intron | 35.0% |
| !! | TTTTATGCTTCCTGGTTTTC+TGG | - | chr6_3:16847015-16847034 | Msa0942260:intron | 35.0% |
| AATCAACAAACCAGAAAACC+AGG | + | chr6_3:16847028-16847047 | None:intergenic | 35.0% | |
| ACACATCGTTGAACTCTTGA+TGG | - | chr6_3:16845733-16845752 | Msa0942260:CDS | 40.0% | |
| ATCGTTCATCAAATCCCCTA+AGG | + | chr6_3:16845847-16845866 | None:intergenic | 40.0% | |
| ACAAGCTAAGACTGAAGTAC+CGG | - | chr6_3:16845895-16845914 | Msa0942260:CDS | 40.0% | |
| TTTGTTTCCAACGTTGTTCC+TGG | - | chr6_3:16845965-16845984 | Msa0942260:intron | 40.0% | |
| GATCTTGTCACCGAAATCAT+TGG | + | chr6_3:16846065-16846084 | None:intergenic | 40.0% | |
| !! | AATTCGAAGTGTTGGTTGAG+AGG | - | chr6_3:16846121-16846140 | Msa0942260:intron | 40.0% |
| !! | GTGTTGGTTGAGAGGATTAA+TGG | - | chr6_3:16846129-16846148 | Msa0942260:intron | 40.0% |
| !!! | GGATCCTTTTTTCTCTCCAA+AGG | - | chr6_3:16846150-16846169 | Msa0942260:intron | 40.0% |
| ! | CCAACCTTTGGAGAGAAAAA+AGG | + | chr6_3:16846157-16846176 | None:intergenic | 40.0% |
| !!! | CCTTTTTTCTCTCCAAAGGT+TGG | - | chr6_3:16846154-16846173 | Msa0942260:intron | 40.0% |
| ! | TTTTCTCTCCAAAGGTTGGA+AGG | - | chr6_3:16846158-16846177 | Msa0942260:intron | 40.0% |
| ! | AAGGCCCTTCGTGATTTTTA+CGG | - | chr6_3:16846177-16846196 | Msa0942260:intron | 40.0% |
| TTGCAATGGCTGTGAAAGAT+AGG | - | chr6_3:16846232-16846251 | Msa0942260:CDS | 40.0% | |
| ATGGCTGTGAAAGATAGGTT+TGG | - | chr6_3:16846237-16846256 | Msa0942260:CDS | 40.0% | |
| TCAATCACAAATCGCATGCT+TGG | + | chr6_3:16846291-16846310 | None:intergenic | 40.0% | |
| ATAGAGCAGATGGAAATGGT+GGG | + | chr6_3:16846350-16846369 | None:intergenic | 40.0% | |
| TGACGATAAGATAGAGCAGA+TGG | + | chr6_3:16846360-16846379 | None:intergenic | 40.0% | |
| ! | GTTTTTCCTGTCAGATGCTT+AGG | - | chr6_3:16846519-16846538 | Msa0942260:CDS | 40.0% |
| TTCATACCTAAGCATCTGAC+AGG | + | chr6_3:16846528-16846547 | None:intergenic | 40.0% | |
| TGTCAGATGCTTAGGTATGA+AGG | - | chr6_3:16846527-16846546 | Msa0942260:CDS | 40.0% | |
| ! | AGGAAGATGTGCTCAGATTT+TGG | - | chr6_3:16846547-16846566 | Msa0942260:CDS | 40.0% |
| TGGATGATTGTGGAAACTGT+TGG | - | chr6_3:16846597-16846616 | Msa0942260:CDS | 40.0% | |
| GGATGATTGTGGAAACTGTT+GGG | - | chr6_3:16846598-16846617 | Msa0942260:CDS | 40.0% | |
| CCTATCTTGCAGTACTCATA+AGG | + | chr6_3:16846650-16846669 | None:intergenic | 40.0% | |
| ! | CCTTATGAGTACTGCAAGAT+AGG | - | chr6_3:16846647-16846666 | Msa0942260:CDS | 40.0% |
| ! | TATGAGTACTGCAAGATAGG+GGG | - | chr6_3:16846650-16846669 | Msa0942260:CDS | 40.0% |
| !!! | GGGGTTTTTTTTGGCTGTTT+TGG | - | chr6_3:16846882-16846901 | Msa0942260:intron | 40.0% |
| AGACCCAAAATCAATCCAAG+CGG | + | chr6_3:16846912-16846931 | None:intergenic | 40.0% | |
| ACACATCGTTGAACTCTTGA+TGG | - | chr6_3:16845733-16845752 | Msa0942260:CDS | 40.0% | |
| ATCGTTCATCAAATCCCCTA+AGG | + | chr6_3:16845847-16845866 | None:intergenic | 40.0% | |
| ACAAGCTAAGACTGAAGTAC+CGG | - | chr6_3:16845895-16845914 | Msa0942260:CDS | 40.0% | |
| TTTGTTTCCAACGTTGTTCC+TGG | - | chr6_3:16845965-16845984 | Msa0942260:intron | 40.0% | |
| GATCTTGTCACCGAAATCAT+TGG | + | chr6_3:16846065-16846084 | None:intergenic | 40.0% | |
| !! | AATTCGAAGTGTTGGTTGAG+AGG | - | chr6_3:16846121-16846140 | Msa0942260:intron | 40.0% |
| !! | GTGTTGGTTGAGAGGATTAA+TGG | - | chr6_3:16846129-16846148 | Msa0942260:intron | 40.0% |
| !!! | GGATCCTTTTTTCTCTCCAA+AGG | - | chr6_3:16846150-16846169 | Msa0942260:intron | 40.0% |
| ! | CCAACCTTTGGAGAGAAAAA+AGG | + | chr6_3:16846157-16846176 | None:intergenic | 40.0% |
| !!! | CCTTTTTTCTCTCCAAAGGT+TGG | - | chr6_3:16846154-16846173 | Msa0942260:intron | 40.0% |
| ! | TTTTCTCTCCAAAGGTTGGA+AGG | - | chr6_3:16846158-16846177 | Msa0942260:intron | 40.0% |
| ! | AAGGCCCTTCGTGATTTTTA+CGG | - | chr6_3:16846177-16846196 | Msa0942260:intron | 40.0% |
| TTGCAATGGCTGTGAAAGAT+AGG | - | chr6_3:16846232-16846251 | Msa0942260:CDS | 40.0% | |
| ATGGCTGTGAAAGATAGGTT+TGG | - | chr6_3:16846237-16846256 | Msa0942260:CDS | 40.0% | |
| TCAATCACAAATCGCATGCT+TGG | + | chr6_3:16846291-16846310 | None:intergenic | 40.0% | |
| ATAGAGCAGATGGAAATGGT+GGG | + | chr6_3:16846350-16846369 | None:intergenic | 40.0% | |
| TGACGATAAGATAGAGCAGA+TGG | + | chr6_3:16846360-16846379 | None:intergenic | 40.0% | |
| ! | GTTTTTCCTGTCAGATGCTT+AGG | - | chr6_3:16846519-16846538 | Msa0942260:CDS | 40.0% |
| TTCATACCTAAGCATCTGAC+AGG | + | chr6_3:16846528-16846547 | None:intergenic | 40.0% | |
| TGTCAGATGCTTAGGTATGA+AGG | - | chr6_3:16846527-16846546 | Msa0942260:CDS | 40.0% | |
| ! | AGGAAGATGTGCTCAGATTT+TGG | - | chr6_3:16846547-16846566 | Msa0942260:CDS | 40.0% |
| TGGATGATTGTGGAAACTGT+TGG | - | chr6_3:16846597-16846616 | Msa0942260:CDS | 40.0% | |
| GGATGATTGTGGAAACTGTT+GGG | - | chr6_3:16846598-16846617 | Msa0942260:CDS | 40.0% | |
| CCTATCTTGCAGTACTCATA+AGG | + | chr6_3:16846650-16846669 | None:intergenic | 40.0% | |
| ! | CCTTATGAGTACTGCAAGAT+AGG | - | chr6_3:16846647-16846666 | Msa0942260:CDS | 40.0% |
| ! | TATGAGTACTGCAAGATAGG+GGG | - | chr6_3:16846650-16846669 | Msa0942260:CDS | 40.0% |
| !!! | GGGGTTTTTTTTGGCTGTTT+TGG | - | chr6_3:16846882-16846901 | Msa0942260:intron | 40.0% |
| AGACCCAAAATCAATCCAAG+CGG | + | chr6_3:16846912-16846931 | None:intergenic | 40.0% | |
| TTTCCACAGCTTGACTGGTA+TGG | - | chr6_3:16845757-16845776 | Msa0942260:CDS | 45.0% | |
| TATCCATACCAGTCAAGCTG+TGG | + | chr6_3:16845763-16845782 | None:intergenic | 45.0% | |
| CATACTCAACGATGTACGTC+CGG | + | chr6_3:16845917-16845936 | None:intergenic | 45.0% | |
| CAATAAGCCAGGAACAACGT+TGG | + | chr6_3:16845975-16845994 | None:intergenic | 45.0% | |
| ACGGTATAGGTTTAGGAGCA+TGG | - | chr6_3:16846196-16846215 | Msa0942260:intron | 45.0% | |
| ! | CGGTATAGGTTTAGGAGCAT+GGG | - | chr6_3:16846197-16846216 | Msa0942260:CDS | 45.0% |
| ! | TTTAGGAGCATGGGTTACCT+TGG | - | chr6_3:16846206-16846225 | Msa0942260:CDS | 45.0% |
| !! | GGTTACCTTGGTGTTTGCAA+TGG | - | chr6_3:16846218-16846237 | Msa0942260:CDS | 45.0% |
| CGCATGCTTGGACCAAAAAT+TGG | + | chr6_3:16846279-16846298 | None:intergenic | 45.0% | |
| GGGAGGTCATTGTTGAATTG+TGG | + | chr6_3:16846330-16846349 | None:intergenic | 45.0% | |
| GATAGAGCAGATGGAAATGG+TGG | + | chr6_3:16846351-16846370 | None:intergenic | 45.0% | |
| CGATGCTACAACTGTGAAGA+TGG | - | chr6_3:16846574-16846593 | Msa0942260:CDS | 45.0% | |
| TGCTACAACTGTGAAGATGG+TGG | - | chr6_3:16846577-16846596 | Msa0942260:CDS | 45.0% | |
| !! | GTGAAGATGGTGGATGATTG+TGG | - | chr6_3:16846587-16846606 | Msa0942260:CDS | 45.0% |
| ! | TCTATGAAGGTGCAAGGGTT+AGG | - | chr6_3:16846703-16846722 | Msa0942260:intron | 45.0% |
| !! | TTCGCCGCTTGGATTGATTT+TGG | - | chr6_3:16846905-16846924 | Msa0942260:intron | 45.0% |
| !! | TCGCCGCTTGGATTGATTTT+GGG | - | chr6_3:16846906-16846925 | Msa0942260:intron | 45.0% |
| !! | GGTCTGAGTTTTATGCTTCC+TGG | - | chr6_3:16847007-16847026 | Msa0942260:CDS | 45.0% |
| CAGCTGAACAAAACACAGCA+GGG | + | chr6_3:16847057-16847076 | None:intergenic | 45.0% | |
| TCAGCTGAACAAAACACAGC+AGG | + | chr6_3:16847058-16847077 | None:intergenic | 45.0% | |
| ! | GTTCAGCTGATGTGCGTTTT+TGG | - | chr6_3:16847068-16847087 | Msa0942260:intron | 45.0% |
| !!! | TGCGTTTTTGGTCTGTTACG+TGG | - | chr6_3:16847080-16847099 | Msa0942260:intron | 45.0% |
| !! | TTTTTGGTCTGTTACGTGGC+TGG | - | chr6_3:16847084-16847103 | Msa0942260:intron | 45.0% |
| ! | TTTTGGTCTGTTACGTGGCT+GGG | - | chr6_3:16847085-16847104 | Msa0942260:intron | 45.0% |
| TTTCCACAGCTTGACTGGTA+TGG | - | chr6_3:16845757-16845776 | Msa0942260:CDS | 45.0% | |
| TATCCATACCAGTCAAGCTG+TGG | + | chr6_3:16845763-16845782 | None:intergenic | 45.0% | |
| CATACTCAACGATGTACGTC+CGG | + | chr6_3:16845917-16845936 | None:intergenic | 45.0% | |
| CAATAAGCCAGGAACAACGT+TGG | + | chr6_3:16845975-16845994 | None:intergenic | 45.0% | |
| ACGGTATAGGTTTAGGAGCA+TGG | - | chr6_3:16846196-16846215 | Msa0942260:intron | 45.0% | |
| ! | CGGTATAGGTTTAGGAGCAT+GGG | - | chr6_3:16846197-16846216 | Msa0942260:CDS | 45.0% |
| ! | TTTAGGAGCATGGGTTACCT+TGG | - | chr6_3:16846206-16846225 | Msa0942260:CDS | 45.0% |
| !! | GGTTACCTTGGTGTTTGCAA+TGG | - | chr6_3:16846218-16846237 | Msa0942260:CDS | 45.0% |
| CGCATGCTTGGACCAAAAAT+TGG | + | chr6_3:16846279-16846298 | None:intergenic | 45.0% | |
| GGGAGGTCATTGTTGAATTG+TGG | + | chr6_3:16846330-16846349 | None:intergenic | 45.0% | |
| GATAGAGCAGATGGAAATGG+TGG | + | chr6_3:16846351-16846370 | None:intergenic | 45.0% | |
| CGATGCTACAACTGTGAAGA+TGG | - | chr6_3:16846574-16846593 | Msa0942260:CDS | 45.0% | |
| TGCTACAACTGTGAAGATGG+TGG | - | chr6_3:16846577-16846596 | Msa0942260:CDS | 45.0% | |
| !! | GTGAAGATGGTGGATGATTG+TGG | - | chr6_3:16846587-16846606 | Msa0942260:CDS | 45.0% |
| ! | TCTATGAAGGTGCAAGGGTT+AGG | - | chr6_3:16846703-16846722 | Msa0942260:intron | 45.0% |
| !! | TTCGCCGCTTGGATTGATTT+TGG | - | chr6_3:16846905-16846924 | Msa0942260:intron | 45.0% |
| !! | TCGCCGCTTGGATTGATTTT+GGG | - | chr6_3:16846906-16846925 | Msa0942260:intron | 45.0% |
| !! | GGTCTGAGTTTTATGCTTCC+TGG | - | chr6_3:16847007-16847026 | Msa0942260:CDS | 45.0% |
| CAGCTGAACAAAACACAGCA+GGG | + | chr6_3:16847057-16847076 | None:intergenic | 45.0% | |
| TCAGCTGAACAAAACACAGC+AGG | + | chr6_3:16847058-16847077 | None:intergenic | 45.0% | |
| ! | GTTCAGCTGATGTGCGTTTT+TGG | - | chr6_3:16847068-16847087 | Msa0942260:intron | 45.0% |
| !!! | TGCGTTTTTGGTCTGTTACG+TGG | - | chr6_3:16847080-16847099 | Msa0942260:intron | 45.0% |
| !! | TTTTTGGTCTGTTACGTGGC+TGG | - | chr6_3:16847084-16847103 | Msa0942260:intron | 45.0% |
| ! | TTTTGGTCTGTTACGTGGCT+GGG | - | chr6_3:16847085-16847104 | Msa0942260:intron | 45.0% |
| ATGGCTTTCCACAGCTTGAC+TGG | - | chr6_3:16845752-16845771 | Msa0942260:CDS | 50.0% | |
| GAACGATCCTGTTTGTGAGC+TGG | - | chr6_3:16845860-16845879 | Msa0942260:CDS | 50.0% | |
| TCCTGTTTGTGAGCTGGACA+AGG | - | chr6_3:16845866-16845885 | Msa0942260:CDS | 50.0% | |
| CACGGATGCAACAATAAGCC+AGG | + | chr6_3:16845986-16846005 | None:intergenic | 50.0% | |
| CACAGCCATTGCAAACACCA+AGG | + | chr6_3:16846226-16846245 | None:intergenic | 50.0% | |
| ! | TGGGACTGCGTGTTGATGTT+TGG | - | chr6_3:16846617-16846636 | Msa0942260:CDS | 50.0% |
| ! | CAGGCTCTATGAAGGTGCAA+GGG | - | chr6_3:16846698-16846717 | Msa0942260:intron | 50.0% |
| ! | GAAGGTGCAAGGGTTAGGAT+TGG | - | chr6_3:16846708-16846727 | Msa0942260:intron | 50.0% |
| TTGCACCAGCAGAAAAACGC+AGG | + | chr6_3:16846952-16846971 | None:intergenic | 50.0% | |
| ! | TGCGTTTTTCTGCTGGTGCA+AGG | - | chr6_3:16846951-16846970 | Msa0942260:CDS | 50.0% |
| ! | TTTTCTGCTGGTGCAAGGTG+CGG | - | chr6_3:16846956-16846975 | Msa0942260:CDS | 50.0% |
| ATGGCTTTCCACAGCTTGAC+TGG | - | chr6_3:16845752-16845771 | Msa0942260:CDS | 50.0% | |
| GAACGATCCTGTTTGTGAGC+TGG | - | chr6_3:16845860-16845879 | Msa0942260:CDS | 50.0% | |
| TCCTGTTTGTGAGCTGGACA+AGG | - | chr6_3:16845866-16845885 | Msa0942260:CDS | 50.0% | |
| CACGGATGCAACAATAAGCC+AGG | + | chr6_3:16845986-16846005 | None:intergenic | 50.0% | |
| CACAGCCATTGCAAACACCA+AGG | + | chr6_3:16846226-16846245 | None:intergenic | 50.0% | |
| ! | TGGGACTGCGTGTTGATGTT+TGG | - | chr6_3:16846617-16846636 | Msa0942260:CDS | 50.0% |
| ! | CAGGCTCTATGAAGGTGCAA+GGG | - | chr6_3:16846698-16846717 | Msa0942260:intron | 50.0% |
| ! | GAAGGTGCAAGGGTTAGGAT+TGG | - | chr6_3:16846708-16846727 | Msa0942260:intron | 50.0% |
| TTGCACCAGCAGAAAAACGC+AGG | + | chr6_3:16846952-16846971 | None:intergenic | 50.0% | |
| ! | TGCGTTTTTCTGCTGGTGCA+AGG | - | chr6_3:16846951-16846970 | Msa0942260:CDS | 50.0% |
| ! | TTTTCTGCTGGTGCAAGGTG+CGG | - | chr6_3:16846956-16846975 | Msa0942260:CDS | 50.0% |
| GCCTTGTCCAGCTCACAAAC+AGG | + | chr6_3:16845870-16845889 | None:intergenic | 55.0% | |
| CGTTGAGTATGACGTCGAGC+AGG | - | chr6_3:16845926-16845945 | Msa0942260:intron | 55.0% | |
| ACGAAGGGCCTTCCAACCTT+TGG | + | chr6_3:16846169-16846188 | None:intergenic | 55.0% | |
| ! | GAGCAGATGGAAATGGTGGG+AGG | + | chr6_3:16846347-16846366 | None:intergenic | 55.0% |
| GTACTGCAAGATAGGGGGAG+TGG | - | chr6_3:16846655-16846674 | Msa0942260:CDS | 55.0% | |
| CAAGATAGGGGGAGTGGAAG+CGG | - | chr6_3:16846661-16846680 | Msa0942260:CDS | 55.0% | |
| !! | AGCGGTTTGTTGAAGCTCGC+AGG | - | chr6_3:16846679-16846698 | Msa0942260:CDS | 55.0% |
| GAAGCTCGCAGGCTCTATGA+AGG | - | chr6_3:16846690-16846709 | Msa0942260:intron | 55.0% | |
| ! | GCAGGCTCTATGAAGGTGCA+AGG | - | chr6_3:16846697-16846716 | Msa0942260:intron | 55.0% |
| ! | AGGATTGGCGCGCTAATTGC+TGG | - | chr6_3:16846723-16846742 | Msa0942260:intron | 55.0% |
| ATTGGCGCGCTAATTGCTGG+AGG | - | chr6_3:16846726-16846745 | Msa0942260:intron | 55.0% | |
| ! | CAGCACCTGCGTTTTTCTGC+TGG | - | chr6_3:16846944-16846963 | Msa0942260:CDS | 55.0% |
| TCTGTTACGTGGCTGGGCTA+TGG | - | chr6_3:16847091-16847110 | Msa0942260:intron | 55.0% | |
| CTGTTACGTGGCTGGGCTAT+GGG | - | chr6_3:16847092-16847111 | Msa0942260:intron | 55.0% | |
| GCCTTGTCCAGCTCACAAAC+AGG | + | chr6_3:16845870-16845889 | None:intergenic | 55.0% | |
| CGTTGAGTATGACGTCGAGC+AGG | - | chr6_3:16845926-16845945 | Msa0942260:intron | 55.0% | |
| ACGAAGGGCCTTCCAACCTT+TGG | + | chr6_3:16846169-16846188 | None:intergenic | 55.0% | |
| ! | GAGCAGATGGAAATGGTGGG+AGG | + | chr6_3:16846347-16846366 | None:intergenic | 55.0% |
| GTACTGCAAGATAGGGGGAG+TGG | - | chr6_3:16846655-16846674 | Msa0942260:CDS | 55.0% | |
| CAAGATAGGGGGAGTGGAAG+CGG | - | chr6_3:16846661-16846680 | Msa0942260:CDS | 55.0% | |
| !! | AGCGGTTTGTTGAAGCTCGC+AGG | - | chr6_3:16846679-16846698 | Msa0942260:CDS | 55.0% |
| GAAGCTCGCAGGCTCTATGA+AGG | - | chr6_3:16846690-16846709 | Msa0942260:intron | 55.0% | |
| ! | GCAGGCTCTATGAAGGTGCA+AGG | - | chr6_3:16846697-16846716 | Msa0942260:intron | 55.0% |
| ! | AGGATTGGCGCGCTAATTGC+TGG | - | chr6_3:16846723-16846742 | Msa0942260:intron | 55.0% |
| ATTGGCGCGCTAATTGCTGG+AGG | - | chr6_3:16846726-16846745 | Msa0942260:intron | 55.0% | |
| ! | CAGCACCTGCGTTTTTCTGC+TGG | - | chr6_3:16846944-16846963 | Msa0942260:CDS | 55.0% |
| TCTGTTACGTGGCTGGGCTA+TGG | - | chr6_3:16847091-16847110 | Msa0942260:intron | 55.0% | |
| CTGTTACGTGGCTGGGCTAT+GGG | - | chr6_3:16847092-16847111 | Msa0942260:intron | 55.0% | |
| GACGTCGAGCAGGTGTGTAG+CGG | - | chr6_3:16845936-16845955 | Msa0942260:intron | 60.0% | |
| !!! | GGCTGTTTTGGTTCGCCGCT+TGG | - | chr6_3:16846894-16846913 | Msa0942260:intron | 60.0% |
| ! | AGGTGCGGCAGTTTTGCTGC+AGG | - | chr6_3:16846971-16846990 | Msa0942260:CDS | 60.0% |
| ! | TGCGGCAGTTTTGCTGCAGG+TGG | - | chr6_3:16846974-16846993 | Msa0942260:CDS | 60.0% |
| GCTGCAGGTGGTATCAGCAG+TGG | - | chr6_3:16846986-16847005 | Msa0942260:CDS | 60.0% | |
| GACGTCGAGCAGGTGTGTAG+CGG | - | chr6_3:16845936-16845955 | Msa0942260:intron | 60.0% | |
| !!! | GGCTGTTTTGGTTCGCCGCT+TGG | - | chr6_3:16846894-16846913 | Msa0942260:intron | 60.0% |
| ! | AGGTGCGGCAGTTTTGCTGC+AGG | - | chr6_3:16846971-16846990 | Msa0942260:CDS | 60.0% |
| ! | TGCGGCAGTTTTGCTGCAGG+TGG | - | chr6_3:16846974-16846993 | Msa0942260:CDS | 60.0% |
| GCTGCAGGTGGTATCAGCAG+TGG | - | chr6_3:16846986-16847005 | Msa0942260:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 16845725 | 16847154 | 16845725 | ID=Msa0942260;Name=Msa0942260 |
| chr6_3 | mRNA | 16845725 | 16847154 | 16845725 | ID=Msa0942260-mRNA-1;Parent=Msa0942260;Name=Msa0942260-mRNA-1;_AED=0.79;_eAED=0.79;_QI=0|0.16|0|0.57|1|1|7|0|261 |
| chr6_3 | exon | 16847106 | 16847154 | 16847106 | ID=Msa0942260-mRNA-1:exon:5100;Parent=Msa0942260-mRNA-1 |
| chr6_3 | exon | 16846932 | 16847029 | 16846932 | ID=Msa0942260-mRNA-1:exon:5099;Parent=Msa0942260-mRNA-1 |
| chr6_3 | exon | 16846806 | 16846845 | 16846806 | ID=Msa0942260-mRNA-1:exon:5098;Parent=Msa0942260-mRNA-1 |
| chr6_3 | exon | 16846430 | 16846707 | 16846430 | ID=Msa0942260-mRNA-1:exon:5097;Parent=Msa0942260-mRNA-1 |
| chr6_3 | exon | 16846197 | 16846346 | 16846197 | ID=Msa0942260-mRNA-1:exon:5096;Parent=Msa0942260-mRNA-1 |
| chr6_3 | exon | 16845843 | 16845932 | 16845843 | ID=Msa0942260-mRNA-1:exon:5095;Parent=Msa0942260-mRNA-1 |
| chr6_3 | exon | 16845725 | 16845805 | 16845725 | ID=Msa0942260-mRNA-1:exon:5094;Parent=Msa0942260-mRNA-1 |
| chr6_3 | CDS | 16847106 | 16847154 | 16847106 | ID=Msa0942260-mRNA-1:cds;Parent=Msa0942260-mRNA-1 |
| chr6_3 | CDS | 16846932 | 16847029 | 16846932 | ID=Msa0942260-mRNA-1:cds;Parent=Msa0942260-mRNA-1 |
| chr6_3 | CDS | 16846806 | 16846845 | 16846806 | ID=Msa0942260-mRNA-1:cds;Parent=Msa0942260-mRNA-1 |
| chr6_3 | CDS | 16846430 | 16846707 | 16846430 | ID=Msa0942260-mRNA-1:cds;Parent=Msa0942260-mRNA-1 |
| chr6_3 | CDS | 16846197 | 16846346 | 16846197 | ID=Msa0942260-mRNA-1:cds;Parent=Msa0942260-mRNA-1 |
| chr6_3 | CDS | 16845843 | 16845932 | 16845843 | ID=Msa0942260-mRNA-1:cds;Parent=Msa0942260-mRNA-1 |
| chr6_3 | CDS | 16845725 | 16845805 | 16845725 | ID=Msa0942260-mRNA-1:cds;Parent=Msa0942260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
