Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0248130 | RHN45222.1 | 59.211 | 76 | 28 | 2 | 18 | 90 | 4 | 79 | 4.14e-17 | 80.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0248130 | A0A396GVV1 | 59.211 | 76 | 28 | 2 | 18 | 90 | 4 | 79 | 1.98e-17 | 80.1 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0084440 | Msa0248130 | 0.809706 | 1.657242e-50 | -8.615850e-47 |
| Msa0248130 | Msa0737340 | 0.849224 | 3.709955e-60 | -8.615850e-47 |
| Msa0248130 | Msa0888120 | 0.822500 | 2.291114e-53 | -8.615850e-47 |
| Msa0248130 | Msa0905880 | 0.841306 | 5.148760e-58 | -8.615850e-47 |
| Msa0248130 | Msa0942260 | 0.829958 | 3.845509e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0248130 | MtrunA17_Chr7g0228051 | 59.211 | 76 | 28 | 2 | 18 | 90 | 4 | 79 | 3.80e-21 | 80.1 |
| Msa0248130 | MtrunA17_Chr1g0203051 | 45.122 | 82 | 45 | 0 | 9 | 90 | 1 | 82 | 4.31e-19 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 45 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAGCCAGGCCATAAAATT+TGG | 0.173345 | 2_2:+31785223 | None:intergenic |
| CTATCTATTTGGTGTTTATC+TGG | 0.181667 | 2_2:-31785458 | Msa0248130:three_prime_UTR |
| TACCACTTCAACTATCTATT+TGG | 0.213390 | 2_2:-31785469 | Msa0248130:three_prime_UTR |
| TGACTGGACTGGGGCTTAAT+TGG | 0.248012 | 2_2:-31785531 | Msa0248130:three_prime_UTR |
| TGCTGACAAAACAAAGTTCT+AGG | 0.276681 | 2_2:+31785152 | None:intergenic |
| AATTTAGTATTGAATCTTGT+TGG | 0.315533 | 2_2:-31785355 | Msa0248130:three_prime_UTR |
| CAGTTTCATTTGACTGGACT+GGG | 0.318483 | 2_2:-31785541 | Msa0248130:three_prime_UTR |
| GCTTGATAAAATGCAGGGTT+TGG | 0.340592 | 2_2:-31785271 | Msa0248130:three_prime_UTR |
| CATAAAATTTGGGAGTAATT+CGG | 0.358267 | 2_2:+31785234 | None:intergenic |
| TGGGTCACCTCCAGCGAATT+CGG | 0.375907 | 2_2:+31788517 | None:intergenic |
| ATTGTTGTGATCTGACAAAA+TGG | 0.378723 | 2_2:-31785308 | Msa0248130:three_prime_UTR |
| ATTACAATCTGCAGACATAA+TGG | 0.393988 | 2_2:-31788582 | Msa0248130:intron |
| CTTGATAAAATGCAGGGTTT+GGG | 0.398742 | 2_2:-31785270 | Msa0248130:three_prime_UTR |
| AATTAAAACTGCGGTTAAGC+TGG | 0.409720 | 2_2:-31785496 | Msa0248130:three_prime_UTR |
| GCAAGAAAATCCTTCATTGT+TGG | 0.416450 | 2_2:+31787996 | None:intergenic |
| GCAGTTTCATTTGACTGGAC+TGG | 0.428118 | 2_2:-31785542 | Msa0248130:three_prime_UTR |
| ACAGCCAGGCCATAAAATTT+GGG | 0.441013 | 2_2:+31785224 | None:intergenic |
| TATAGACAAATTAAACTTGA+AGG | 0.459382 | 2_2:-31787935 | Msa0248130:CDS |
| TTTATCAAGCTTATTTGGGC+TGG | 0.463016 | 2_2:+31785284 | None:intergenic |
| GAAAGGCAGTTTCATTTGAC+TGG | 0.464965 | 2_2:-31785547 | Msa0248130:three_prime_UTR |
| CCTTTCTGCAGCCTACAGCC+AGG | 0.471895 | 2_2:+31785210 | None:intergenic |
| AATTAAATGTAATGAAATTG+TGG | 0.476084 | 2_2:-31785398 | Msa0248130:three_prime_UTR |
| TAGGGCTTGGACAGCAGCTA+TGG | 0.478661 | 2_2:-31788063 | Msa0248130:CDS |
| CTGGCTGTAGGCTGCAGAAA+GGG | 0.482950 | 2_2:-31785209 | Msa0248130:three_prime_UTR |
| AATGGATCTAGAAGAAATCC+TGG | 0.531239 | 2_2:-31788564 | Msa0248130:CDS |
| AAATAAGCTTGATAAAATGC+AGG | 0.533825 | 2_2:-31785277 | Msa0248130:three_prime_UTR |
| ATTAATGCATTGAATTCGAA+AGG | 0.537697 | 2_2:-31785564 | Msa0248130:three_prime_UTR |
| GCAGATGAATCCAACAATGA+AGG | 0.538431 | 2_2:-31788006 | Msa0248130:CDS |
| CACCAAATAGATAGTTGAAG+TGG | 0.540603 | 2_2:+31785467 | None:intergenic |
| GGACAGCAGCTATGGGGCAG+AGG | 0.540929 | 2_2:-31788055 | Msa0248130:CDS |
| GAGTCAGAAACCGAATTCGC+TGG | 0.545609 | 2_2:-31788527 | Msa0248130:CDS |
| CCTGGCTGTAGGCTGCAGAA+AGG | 0.556358 | 2_2:-31785210 | Msa0248130:three_prime_UTR |
| AGGGCTTGGACAGCAGCTAT+GGG | 0.556741 | 2_2:-31788062 | Msa0248130:CDS |
| AATAAGCTTGATAAAATGCA+GGG | 0.559301 | 2_2:-31785276 | Msa0248130:three_prime_UTR |
| CTGCAGAAAGGGAGGTAACA+AGG | 0.560062 | 2_2:-31785198 | Msa0248130:three_prime_UTR |
| TGAGTTGTGAAGAAATAATG+AGG | 0.587305 | 2_2:-31787909 | Msa0248130:intron |
| AATGTAATGAAATTGTGGAA+TGG | 0.597325 | 2_2:-31785393 | Msa0248130:three_prime_UTR |
| AGTTTCATTTGACTGGACTG+GGG | 0.597631 | 2_2:-31785540 | Msa0248130:three_prime_UTR |
| GCTGTAGGCTGCAGAAAGGG+AGG | 0.630375 | 2_2:-31785206 | Msa0248130:three_prime_UTR |
| TTGTTGTGATCTGACAAAAT+GGG | 0.664181 | 2_2:-31785307 | Msa0248130:three_prime_UTR |
| TCAGAAACCGAATTCGCTGG+AGG | 0.682935 | 2_2:-31788524 | Msa0248130:CDS |
| TCAATGTAAAATTAAAACTG+CGG | 0.686369 | 2_2:-31785505 | Msa0248130:three_prime_UTR |
| TTACGATGATGCAACTGCTG+TGG | 0.689156 | 2_2:-31787971 | Msa0248130:CDS |
| GGGCTTGGACAGCAGCTATG+GGG | 0.701144 | 2_2:-31788061 | Msa0248130:CDS |
| ATTCGCTGGAGGTGACCCAG+AGG | 0.723098 | 2_2:-31788513 | Msa0248130:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATTGAAATTTATAATAAA+AGG | + | chr2_2:31785457-31785476 | None:intergenic | 10.0% |
| !!! | AAATAATGTTTTTAATTTGA+TGG | - | chr2_2:31785750-31785769 | Msa0248130:intron | 10.0% |
| !!! | AGAAATTTACAAATTTTAGA+TGG | - | chr2_2:31785201-31785220 | Msa0248130:three_prime_UTR | 15.0% |
| !!! | GAAATTTACAAATTTTAGAT+GGG | - | chr2_2:31785202-31785221 | Msa0248130:three_prime_UTR | 15.0% |
| !!! | AAATTGTAGATTTTTAACAT+TGG | + | chr2_2:31786910-31786929 | None:intergenic | 15.0% |
| !! | AATTAAATGTAATGAAATTG+TGG | - | chr2_2:31788452-31788471 | Msa0248130:intron | 15.0% |
| !! | TATTATCAATTTCATGTTTG+TGG | - | chr2_2:31785399-31785418 | Msa0248130:three_prime_UTR | 20.0% |
| !! | ATTATCAATTTCATGTTTGT+GGG | - | chr2_2:31785400-31785419 | Msa0248130:three_prime_UTR | 20.0% |
| !!! | ATGGTAAAATTTGACTTATA+GGG | - | chr2_2:31785769-31785788 | Msa0248130:intron | 20.0% |
| !! | TATAGACAAATTAAACTTGA+AGG | - | chr2_2:31785915-31785934 | Msa0248130:intron | 20.0% |
| !! | TATTAAAATCAATATGGACT+TGG | + | chr2_2:31786185-31786204 | None:intergenic | 20.0% |
| !! | GATGACTATTAAAATCAATA+TGG | + | chr2_2:31786191-31786210 | None:intergenic | 20.0% |
| !! | ACAATGAACAAATTAAAATG+CGG | - | chr2_2:31786427-31786446 | Msa0248130:intron | 20.0% |
| !! | TCAATGTAAAATTAAAACTG+CGG | - | chr2_2:31788345-31788364 | Msa0248130:intron | 20.0% |
| !!! | AATTTAGTATTGAATCTTGT+TGG | - | chr2_2:31788495-31788514 | Msa0248130:intron | 20.0% |
| ! | TGCACAAAAACTAAAATCAA+TGG | + | chr2_2:31785529-31785548 | None:intergenic | 25.0% |
| ! | TTACATCCATTGAATCAATT+TGG | + | chr2_2:31785732-31785751 | None:intergenic | 25.0% |
| !! | GATGGTAAAATTTGACTTAT+AGG | - | chr2_2:31785768-31785787 | Msa0248130:intron | 25.0% |
| !! | TAGCATTTACGTTTTATAAC+TGG | - | chr2_2:31785986-31786005 | Msa0248130:intron | 25.0% |
| !!! | TTGATTTTAATAGTCATCGT+TGG | - | chr2_2:31786193-31786212 | Msa0248130:intron | 25.0% |
| !! | ATTTTCGCATTGTTTTCATT+TGG | + | chr2_2:31786320-31786339 | None:intergenic | 25.0% |
| ! | CAATGAACAAATTAAAATGC+GGG | - | chr2_2:31786428-31786447 | Msa0248130:intron | 25.0% |
| ! | AATGAACAAATTAAAATGCG+GGG | - | chr2_2:31786429-31786448 | Msa0248130:intron | 25.0% |
| ! | TTGGAAACATACTTTGAATA+TGG | - | chr2_2:31786524-31786543 | Msa0248130:intron | 25.0% |
| ! | AAACATACTTTGAATATGGA+TGG | - | chr2_2:31786528-31786547 | Msa0248130:intron | 25.0% |
| ! | ACACCTGAAAAAATAACTAA+GGG | + | chr2_2:31786663-31786682 | None:intergenic | 25.0% |
| ! | TACACCTGAAAAAATAACTA+AGG | + | chr2_2:31786664-31786683 | None:intergenic | 25.0% |
| ! | CAAATATAACACTCTTATTG+TGG | + | chr2_2:31786692-31786711 | None:intergenic | 25.0% |
| !!! | CACAATAAGAGTGTTATATT+TGG | - | chr2_2:31786690-31786709 | Msa0248130:intron | 25.0% |
| ! | TGTTAGAGATGTATAAAAAG+CGG | - | chr2_2:31787036-31787055 | Msa0248130:intron | 25.0% |
| ! | AATGATTATGAATCTTCGTA+TGG | - | chr2_2:31787236-31787255 | Msa0248130:intron | 25.0% |
| !! | AGTCTCTAAAAATTTGTGTT+GGG | + | chr2_2:31787279-31787298 | None:intergenic | 25.0% |
| !! | AAGTCTCTAAAAATTTGTGT+TGG | + | chr2_2:31787280-31787299 | None:intergenic | 25.0% |
| ! | AAACATCATAAAAACTGACT+TGG | + | chr2_2:31787321-31787340 | None:intergenic | 25.0% |
| !! | AGTCAGTTTTTATGATGTTT+AGG | - | chr2_2:31787321-31787340 | Msa0248130:intron | 25.0% |
| ! | AAATAGTGTAGTTAAAGACT+GGG | + | chr2_2:31787400-31787419 | None:intergenic | 25.0% |
| ! | AAGCAAATGTCAAATTATCT+TGG | + | chr2_2:31787466-31787485 | None:intergenic | 25.0% |
| ! | GTACAAATGAATTTGTAGAA+AGG | - | chr2_2:31787750-31787769 | Msa0248130:intron | 25.0% |
| !! | TGAAGATTGTAACATTGATT+TGG | - | chr2_2:31788075-31788094 | Msa0248130:intron | 25.0% |
| !!! | GACATCTAATTTTGTTTGTT+TGG | - | chr2_2:31788224-31788243 | Msa0248130:intron | 25.0% |
| ! | ATTAATGCATTGAATTCGAA+AGG | - | chr2_2:31788286-31788305 | Msa0248130:intron | 25.0% |
| ! | AATGTAATGAAATTGTGGAA+TGG | - | chr2_2:31788457-31788476 | Msa0248130:intron | 25.0% |
| !! | GCATTTTATCAAGCTTATTT+GGG | + | chr2_2:31788573-31788592 | None:intergenic | 25.0% |
| !! | TGCATTTTATCAAGCTTATT+TGG | + | chr2_2:31788574-31788593 | None:intergenic | 25.0% |
| ! | AAATAAGCTTGATAAAATGC+AGG | - | chr2_2:31788573-31788592 | Msa0248130:intron | 25.0% |
| ! | AATAAGCTTGATAAAATGCA+GGG | - | chr2_2:31788574-31788593 | Msa0248130:intron | 25.0% |
| ! | CATAAAATTTGGGAGTAATT+CGG | + | chr2_2:31788619-31788638 | None:intergenic | 25.0% |
| ATTACAATCTGCAGACATAA+TGG | - | chr2_2:31785268-31785287 | Msa0248130:three_prime_UTR | 30.0% | |
| AAAAAATCATCATCACCTCT+GGG | + | chr2_2:31785355-31785374 | None:intergenic | 30.0% | |
| AAAAAAATCATCATCACCTC+TGG | + | chr2_2:31785356-31785375 | None:intergenic | 30.0% | |
| AAGGTTCTTTAGTGTAACAA+AGG | + | chr2_2:31785438-31785457 | None:intergenic | 30.0% | |
| ! | TTGAATGTTGTTTGTACATG+TGG | - | chr2_2:31785480-31785499 | Msa0248130:three_prime_UTR | 30.0% |
| ! | AGAGATAGAGTAGGTAATTT+TGG | - | chr2_2:31785627-31785646 | Msa0248130:intron | 30.0% |
| GGAATTCTCAAATTCTTGAT+AGG | - | chr2_2:31785704-31785723 | Msa0248130:intron | 30.0% | |
| ! | TAGGATCCAAATTGATTCAA+TGG | - | chr2_2:31785723-31785742 | Msa0248130:intron | 30.0% |
| ! | AAAATTTGACTTATAGGGCT+TGG | - | chr2_2:31785774-31785793 | Msa0248130:intron | 30.0% |
| TGAGTTGTGAAGAAATAATG+AGG | - | chr2_2:31785941-31785960 | Msa0248130:intron | 30.0% | |
| !! | GAAAGGTTTGTTGAACTATT+TGG | + | chr2_2:31786071-31786090 | None:intergenic | 30.0% |
| AACAAACCTTTCTTTGCAAT+AGG | - | chr2_2:31786079-31786098 | Msa0248130:intron | 30.0% | |
| ACAAACCTTTCTTTGCAATA+GGG | - | chr2_2:31786080-31786099 | Msa0248130:intron | 30.0% | |
| ! | ATCAATATGGACTTGGATTT+TGG | + | chr2_2:31786178-31786197 | None:intergenic | 30.0% |
| ! | TGACCACAATCATTCATTTT+TGG | - | chr2_2:31786236-31786255 | Msa0248130:intron | 30.0% |
| CATCCAAAAATGAATGATTG+TGG | + | chr2_2:31786242-31786261 | None:intergenic | 30.0% | |
| ATGAAAACAATGCGAAAATC+TGG | - | chr2_2:31786321-31786340 | Msa0248130:intron | 30.0% | |
| CTGCACTTGAATTTCTTAAA+GGG | - | chr2_2:31786475-31786494 | Msa0248130:intron | 30.0% | |
| ! | GAAGTCTTAAGCATTTGTTT+TGG | - | chr2_2:31786550-31786569 | Msa0248130:intron | 30.0% |
| !!! | ACACCCTTAGTTATTTTTTC+AGG | - | chr2_2:31786657-31786676 | Msa0248130:intron | 30.0% |
| ATATAACACTCTTATTGTGG+TGG | + | chr2_2:31786689-31786708 | None:intergenic | 30.0% | |
| !! | ATATTTGGTAGTGCAATTGT+CGG | - | chr2_2:31786705-31786724 | Msa0248130:intron | 30.0% |
| !! | GGAAAAATTTGTTGAAGCAA+TGG | - | chr2_2:31786761-31786780 | Msa0248130:intron | 30.0% |
| !! | AAATTTGTTGAAGCAATGGA+TGG | - | chr2_2:31786765-31786784 | Msa0248130:intron | 30.0% |
| AATGCGAAAAGCAATTAAGA+AGG | - | chr2_2:31786827-31786846 | Msa0248130:intron | 30.0% | |
| ! | TTTTTCCTAATGCTCATCAT+CGG | - | chr2_2:31786850-31786869 | Msa0248130:intron | 30.0% |
| ! | TAAGTTTAAGCGTTGTATGT+TGG | - | chr2_2:31786935-31786954 | Msa0248130:intron | 30.0% |
| ! | AAGTTTAAGCGTTGTATGTT+GGG | - | chr2_2:31786936-31786955 | Msa0248130:intron | 30.0% |
| CAAGAGCTTATATGTGAATT+TGG | - | chr2_2:31786993-31787012 | Msa0248130:intron | 30.0% | |
| GCTTATATGTGAATTTGGTT+TGG | - | chr2_2:31786998-31787017 | Msa0248130:intron | 30.0% | |
| !! | TATATGTGAATTTGGTTTGG+AGG | - | chr2_2:31787001-31787020 | Msa0248130:intron | 30.0% |
| !! | ATATGTGAATTTGGTTTGGA+GGG | - | chr2_2:31787002-31787021 | Msa0248130:intron | 30.0% |
| TGTATAAAAAGCGGAAAATG+TGG | - | chr2_2:31787045-31787064 | Msa0248130:intron | 30.0% | |
| GTATAAAAAGCGGAAAATGT+GGG | - | chr2_2:31787046-31787065 | Msa0248130:intron | 30.0% | |
| CAAATAGTGTAGTTAAAGAC+TGG | + | chr2_2:31787401-31787420 | None:intergenic | 30.0% | |
| ! | TGTGACAACATATGTTACTT+TGG | - | chr2_2:31787664-31787683 | Msa0248130:intron | 30.0% |
| TTTGTACTACGAATTTCATC+CGG | + | chr2_2:31787737-31787756 | None:intergenic | 30.0% | |
| TACCACTTCAACTATCTATT+TGG | - | chr2_2:31788381-31788400 | Msa0248130:intron | 30.0% | |
| !! | CTATCTATTTGGTGTTTATC+TGG | - | chr2_2:31788392-31788411 | Msa0248130:intron | 30.0% |
| ATTGTTGTGATCTGACAAAA+TGG | - | chr2_2:31788542-31788561 | Msa0248130:CDS | 30.0% | |
| TTGTTGTGATCTGACAAAAT+GGG | - | chr2_2:31788543-31788562 | Msa0248130:CDS | 30.0% | |
| ! | CGAATTACTCCCAAATTTTA+TGG | - | chr2_2:31788617-31788636 | Msa0248130:intron | 30.0% |
| AATGGATCTAGAAGAAATCC+TGG | - | chr2_2:31785286-31785305 | Msa0248130:three_prime_UTR | 35.0% | |
| ACTCTTCATCAAAAATAGCC+AGG | + | chr2_2:31785307-31785326 | None:intergenic | 35.0% | |
| GCAAGAAAATCCTTCATTGT+TGG | + | chr2_2:31785857-31785876 | None:intergenic | 35.0% | |
| !! | TGAGGTACCATTTTCTTGAT+CGG | - | chr2_2:31785959-31785978 | Msa0248130:intron | 35.0% |
| CTATTTCCCGATCAAGAAAA+TGG | + | chr2_2:31785969-31785988 | None:intergenic | 35.0% | |
| GGGATATCAAATATGCTAGT+AGG | - | chr2_2:31786112-31786131 | Msa0248130:intron | 35.0% | |
| GAGATCATAGACCTAATAGT+AGG | - | chr2_2:31786139-31786158 | Msa0248130:intron | 35.0% | |
| ! | ACCTAAATTTTCATACCCAC+CGG | + | chr2_2:31786388-31786407 | None:intergenic | 35.0% |
| GCTGCACTTGAATTTCTTAA+AGG | - | chr2_2:31786474-31786493 | Msa0248130:intron | 35.0% | |
| ! | CTAGGGATGATATGATGTTT+TGG | - | chr2_2:31786505-31786524 | Msa0248130:intron | 35.0% |
| !!! | AAGCATTTGTTTTGGTGTGA+TGG | - | chr2_2:31786558-31786577 | Msa0248130:intron | 35.0% |
| TTGATGAGTTTGAGCGTAAA+TGG | - | chr2_2:31786970-31786989 | Msa0248130:intron | 35.0% | |
| !!! | GTAAGTTTTTTGCTGGCTTT+AGG | - | chr2_2:31787087-31787106 | Msa0248130:intron | 35.0% |
| TGTGAGTGTTCTGTCAAATT+TGG | - | chr2_2:31787154-31787173 | Msa0248130:intron | 35.0% | |
| ! | TTTTACACCAGTTTTTCCGT+TGG | - | chr2_2:31787183-31787202 | Msa0248130:intron | 35.0% |
| TGAATCTTCGTATGGAGAAA+CGG | - | chr2_2:31787244-31787263 | Msa0248130:intron | 35.0% | |
| TATGATGTTTAGGCCTATGT+TGG | - | chr2_2:31787331-31787350 | Msa0248130:intron | 35.0% | |
| TCCACAGAACATCATTTCTT+GGG | + | chr2_2:31787430-31787449 | None:intergenic | 35.0% | |
| CATCTTTCCAGAACAATAGA+AGG | + | chr2_2:31787575-31787594 | None:intergenic | 35.0% | |
| !! | CTTCTATTGTTCTGGAAAGA+TGG | - | chr2_2:31787573-31787592 | Msa0248130:intron | 35.0% |
| ! | AACAGCAACTTTGACACTTT+TGG | + | chr2_2:31787600-31787619 | None:intergenic | 35.0% |
| ACATATGTTGTCACAAAAGC+CGG | + | chr2_2:31787659-31787678 | None:intergenic | 35.0% | |
| TGATTGTGAATCTTCGATGT+TGG | - | chr2_2:31787808-31787827 | Msa0248130:intron | 35.0% | |
| GATTGTGAATCTTCGATGTT+GGG | - | chr2_2:31787809-31787828 | Msa0248130:intron | 35.0% | |
| !!! | TTCCTTTTTGGCTTACCAAT+AGG | + | chr2_2:31787914-31787933 | None:intergenic | 35.0% |
| ! | CACTTTTGTGTCTTCCTTTT+TGG | + | chr2_2:31787926-31787945 | None:intergenic | 35.0% |
| AAAAGGAAGACACAAAAGTG+TGG | - | chr2_2:31787926-31787945 | Msa0248130:CDS | 35.0% | |
| ! | ACACAAAAGTGTGGAATATG+TGG | - | chr2_2:31787935-31787954 | Msa0248130:CDS | 35.0% |
| TGTGGAATATGTGGATTTGA+GGG | - | chr2_2:31787944-31787963 | Msa0248130:CDS | 35.0% | |
| CTGCAAATAAACTAACACGA+TGG | + | chr2_2:31788205-31788224 | None:intergenic | 35.0% | |
| TTTGTTTGTTTGGTACCTGT+AGG | - | chr2_2:31788234-31788253 | Msa0248130:intron | 35.0% | |
| TGTTTCAGAAAACATCCTAC+AGG | + | chr2_2:31788252-31788271 | None:intergenic | 35.0% | |
| AATTAAAACTGCGGTTAAGC+TGG | - | chr2_2:31788354-31788373 | Msa0248130:intron | 35.0% | |
| CACCAAATAGATAGTTGAAG+TGG | + | chr2_2:31788386-31788405 | None:intergenic | 35.0% | |
| TTTATCAAGCTTATTTGGGC+TGG | + | chr2_2:31788569-31788588 | None:intergenic | 35.0% | |
| CTTGATAAAATGCAGGGTTT+GGG | - | chr2_2:31788580-31788599 | Msa0248130:intron | 35.0% | |
| GTTGTTTGTACATGTGGACT+TGG | - | chr2_2:31785486-31785505 | Msa0248130:three_prime_UTR | 40.0% | |
| ! | CATGTGGACTTGGTATTCAA+TGG | - | chr2_2:31785496-31785515 | Msa0248130:three_prime_UTR | 40.0% |
| ! | GACTTGGTATTCAATGGACA+GGG | - | chr2_2:31785502-31785521 | Msa0248130:three_prime_UTR | 40.0% |
| TCTCTCTCTCTCTCTCAAAA+TGG | + | chr2_2:31785562-31785581 | None:intergenic | 40.0% | |
| GCAGATGAATCCAACAATGA+AGG | - | chr2_2:31785844-31785863 | Msa0248130:intron | 40.0% | |
| !! | GAGGTACCATTTTCTTGATC+GGG | - | chr2_2:31785960-31785979 | Msa0248130:intron | 40.0% |
| AACTGGTATCCATGTTTGCA+CGG | - | chr2_2:31786003-31786022 | Msa0248130:intron | 40.0% | |
| !! | GATTTGCTGGTAGGAAAAGT+CGG | - | chr2_2:31786025-31786044 | Msa0248130:intron | 40.0% |
| ! | ATTTGCTGGTAGGAAAAGTC+GGG | - | chr2_2:31786026-31786045 | Msa0248130:intron | 40.0% |
| ACCTTTCTTTGCAATAGGGA+AGG | - | chr2_2:31786084-31786103 | Msa0248130:intron | 40.0% | |
| ACCTTCCCTATTGCAAAGAA+AGG | + | chr2_2:31786088-31786107 | None:intergenic | 40.0% | |
| TTTGCAATAGGGAAGGTCTT+AGG | - | chr2_2:31786091-31786110 | Msa0248130:intron | 40.0% | |
| TTGCAATAGGGAAGGTCTTA+GGG | - | chr2_2:31786092-31786111 | Msa0248130:intron | 40.0% | |
| CATAGACCTAATAGTAGGTG+TGG | - | chr2_2:31786144-31786163 | Msa0248130:intron | 40.0% | |
| GAACAACCACACCTACTATT+AGG | + | chr2_2:31786153-31786172 | None:intergenic | 40.0% | |
| TAAGTATGAGCGCATGTTAC+CGG | - | chr2_2:31786263-31786282 | Msa0248130:intron | 40.0% | |
| TAACCATATATCCGTGACGT+GGG | + | chr2_2:31786351-31786370 | None:intergenic | 40.0% | |
| ATAACCATATATCCGTGACG+TGG | + | chr2_2:31786352-31786371 | None:intergenic | 40.0% | |
| !! | GGTTATTTTGCTACACAAGC+CGG | - | chr2_2:31786366-31786385 | Msa0248130:intron | 40.0% |
| TTCTTAAAGGGATGTGCACT+AGG | - | chr2_2:31786487-31786506 | Msa0248130:intron | 40.0% | |
| TCTTAAAGGGATGTGCACTA+GGG | - | chr2_2:31786488-31786507 | Msa0248130:intron | 40.0% | |
| ! | CGTATGGATTACTCTCTGTT+TGG | - | chr2_2:31786588-31786607 | Msa0248130:intron | 40.0% |
| !! | TTGGTTTGGAGGGTAATAGT+TGG | - | chr2_2:31787012-31787031 | Msa0248130:intron | 40.0% |
| !!! | ATTCGGGGTAAGTTTTTTGC+TGG | - | chr2_2:31787080-31787099 | Msa0248130:intron | 40.0% |
| AAGATGTGAAGGTTTGCACT+CGG | - | chr2_2:31787118-31787137 | Msa0248130:intron | 40.0% | |
| GATTAAGCCAACGGAAAAAC+TGG | + | chr2_2:31787193-31787212 | None:intergenic | 40.0% | |
| ACCTCAAGTGATTAAGCCAA+CGG | + | chr2_2:31787202-31787221 | None:intergenic | 40.0% | |
| TGTTTAGGCCTATGTTGGAA+AGG | - | chr2_2:31787336-31787355 | Msa0248130:intron | 40.0% | |
| GTTTAGGCCTATGTTGGAAA+GGG | - | chr2_2:31787337-31787356 | Msa0248130:intron | 40.0% | |
| GTTGTAGAGAAGGTGAGAAA+TGG | - | chr2_2:31787374-31787393 | Msa0248130:intron | 40.0% | |
| ACCCAAGAAATGATGTTCTG+TGG | - | chr2_2:31787426-31787445 | Msa0248130:intron | 40.0% | |
| GTCCACAGAACATCATTTCT+TGG | + | chr2_2:31787431-31787450 | None:intergenic | 40.0% | |
| CATTTGCTTGCACTTGTATG+AGG | - | chr2_2:31787477-31787496 | Msa0248130:intron | 40.0% | |
| ! | TGTATGAGGTTTGAGACACT+AGG | - | chr2_2:31787491-31787510 | Msa0248130:intron | 40.0% |
| CTTTCCAGAACAATAGAAGG+AGG | + | chr2_2:31787572-31787591 | None:intergenic | 40.0% | |
| TTGTAGAAAGGCAGACAGAA+AGG | - | chr2_2:31787762-31787781 | Msa0248130:intron | 40.0% | |
| ACACAAACTGGTCGTAATGT+AGG | - | chr2_2:31787833-31787852 | Msa0248130:intron | 40.0% | |
| CACAAACTGGTCGTAATGTA+GGG | - | chr2_2:31787834-31787853 | Msa0248130:intron | 40.0% | |
| TCCTCATCTCAAACTCCTAT+TGG | - | chr2_2:31787896-31787915 | Msa0248130:intron | 40.0% | |
| ! | ACCAATAGGAGTTTGAGATG+AGG | + | chr2_2:31787900-31787919 | None:intergenic | 40.0% |
| CTCCTATTGGTAAGCCAAAA+AGG | - | chr2_2:31787909-31787928 | Msa0248130:intron | 40.0% | |
| GTGTGGAATATGTGGATTTG+AGG | - | chr2_2:31787943-31787962 | Msa0248130:CDS | 40.0% | |
| AAATTGCTTCGTCTCTAAGC+TGG | + | chr2_2:31787988-31788007 | None:intergenic | 40.0% | |
| GAAAGGCAGTTTCATTTGAC+TGG | - | chr2_2:31788303-31788322 | Msa0248130:intron | 40.0% | |
| CAGTTTCATTTGACTGGACT+GGG | - | chr2_2:31788309-31788328 | Msa0248130:intron | 40.0% | |
| AGTTTCATTTGACTGGACTG+GGG | - | chr2_2:31788310-31788329 | Msa0248130:intron | 40.0% | |
| GCTTGATAAAATGCAGGGTT+TGG | - | chr2_2:31788579-31788598 | Msa0248130:intron | 40.0% | |
| ! | TACTCCCAAATTTTATGGCC+TGG | - | chr2_2:31788622-31788641 | Msa0248130:intron | 40.0% |
| ACAGCCAGGCCATAAAATTT+GGG | + | chr2_2:31788629-31788648 | None:intergenic | 40.0% | |
| TACAGCCAGGCCATAAAATT+TGG | + | chr2_2:31788630-31788649 | None:intergenic | 40.0% | |
| ! | AAATTTTATGGCCTGGCTGT+AGG | - | chr2_2:31788629-31788648 | Msa0248130:intron | 40.0% |
| ! | GGACTTGGTATTCAATGGAC+AGG | - | chr2_2:31785501-31785520 | Msa0248130:three_prime_UTR | 45.0% |
| GAGAGAGAGAGAGATAGAGT+AGG | - | chr2_2:31785618-31785637 | Msa0248130:intron | 45.0% | |
| GAGAGCAGAGCACAATTTGA+TGG | + | chr2_2:31785669-31785688 | None:intergenic | 45.0% | |
| GCTCTCTATCTCTCTCGAAA+TGG | - | chr2_2:31785683-31785702 | Msa0248130:intron | 45.0% | |
| TTACGATGATGCAACTGCTG+TGG | - | chr2_2:31785879-31785898 | Msa0248130:intron | 45.0% | |
| ! | GTAGGAAAAGTCGGGTTGTT+AGG | - | chr2_2:31786034-31786053 | Msa0248130:intron | 45.0% |
| CGGGTTGTTAGGAACACTAA+TGG | - | chr2_2:31786045-31786064 | Msa0248130:intron | 45.0% | |
| TCAGTCATCTTCCTATGTGC+CGG | + | chr2_2:31786285-31786304 | None:intergenic | 45.0% | |
| ATTCCCACGTCACGGATATA+TGG | - | chr2_2:31786345-31786364 | Msa0248130:intron | 45.0% | |
| ! | TATTTTGCTACACAAGCCGG+TGG | - | chr2_2:31786369-31786388 | Msa0248130:intron | 45.0% |
| ! | ATTTTGCTACACAAGCCGGT+GGG | - | chr2_2:31786370-31786389 | Msa0248130:intron | 45.0% |
| GCCGGTGGGTATGAAAATTT+AGG | - | chr2_2:31786384-31786403 | Msa0248130:intron | 45.0% | |
| ! | GTGTGATGGAGTAAGTCGTA+TGG | - | chr2_2:31786572-31786591 | Msa0248130:intron | 45.0% |
| AGACAGAAGAGAGCTATGTC+TGG | - | chr2_2:31786733-31786752 | Msa0248130:intron | 45.0% | |
| AGCAATGGATGGCAAATGTC+CGG | - | chr2_2:31786776-31786795 | Msa0248130:intron | 45.0% | |
| CACAACCGATGATGAGCATT+AGG | + | chr2_2:31786858-31786877 | None:intergenic | 45.0% | |
| AGGACGACTTCAAGATGTGA+AGG | - | chr2_2:31787107-31787126 | Msa0248130:intron | 45.0% | |
| GAAGGTTTGCACTCGGAATT+TGG | - | chr2_2:31787125-31787144 | Msa0248130:intron | 45.0% | |
| !! | TCCGTTGGCTTAATCACTTG+AGG | - | chr2_2:31787198-31787217 | Msa0248130:intron | 45.0% |
| CATGCCTCCTTCTATTGTTC+TGG | - | chr2_2:31787565-31787584 | Msa0248130:intron | 45.0% | |
| AACGCTGCAAATGCAAGTAG+TGG | - | chr2_2:31787620-31787639 | Msa0248130:intron | 45.0% | |
| TAGTGGTAGTCAACGTGATC+CGG | - | chr2_2:31787637-31787656 | Msa0248130:intron | 45.0% | |
| CTTTGGTCGAGCGATGTAAA+AGG | - | chr2_2:31787681-31787700 | Msa0248130:intron | 45.0% | |
| GTGAATGCTGCATTTCAGTG+TGG | - | chr2_2:31787707-31787726 | Msa0248130:intron | 45.0% | |
| TCGATGTTGGGAACACAAAC+TGG | - | chr2_2:31787821-31787840 | Msa0248130:intron | 45.0% | |
| AGAAATGACTAACCACGACG+AGG | - | chr2_2:31788033-31788052 | Msa0248130:CDS | 45.0% | |
| GCAGTTTCATTTGACTGGAC+TGG | - | chr2_2:31788308-31788327 | Msa0248130:intron | 45.0% | |
| GAGTCAGAAACCGAATTCGC+TGG | - | chr2_2:31785323-31785342 | Msa0248130:three_prime_UTR | 50.0% | |
| TCAGAAACCGAATTCGCTGG+AGG | - | chr2_2:31785326-31785345 | Msa0248130:three_prime_UTR | 50.0% | |
| CCAGCAAATCCGTGCAAACA+TGG | + | chr2_2:31786015-31786034 | None:intergenic | 50.0% | |
| CCATGTTTGCACGGATTTGC+TGG | - | chr2_2:31786012-31786031 | Msa0248130:intron | 50.0% | |
| !! | GTTTGCACGGATTTGCTGGT+AGG | - | chr2_2:31786016-31786035 | Msa0248130:intron | 50.0% |
| AATCTGGCATTCCCACGTCA+CGG | - | chr2_2:31786337-31786356 | Msa0248130:intron | 50.0% | |
| CTCTCTGTTTGGCGATGTGT+TGG | - | chr2_2:31786599-31786618 | Msa0248130:intron | 50.0% | |
| !! | AGAGAGCTATGTCTGGCTCT+TGG | - | chr2_2:31786740-31786759 | Msa0248130:intron | 50.0% |
| CCGTCAGTTATCACAGACAC+CGG | + | chr2_2:31786798-31786817 | None:intergenic | 50.0% | |
| CCGGTGTCTGTGATAACTGA+CGG | - | chr2_2:31786795-31786814 | Msa0248130:intron | 50.0% | |
| ! | CTATGTTGGAAAGGGCGTGT+CGG | - | chr2_2:31787345-31787364 | Msa0248130:intron | 50.0% |
| TCGGTGCAAGGTTGTAGAGA+AGG | - | chr2_2:31787364-31787383 | Msa0248130:intron | 50.0% | |
| GGTCGAGCGATGTAAAAGGA+TGG | - | chr2_2:31787685-31787704 | Msa0248130:intron | 50.0% | |
| TGCATTTCAGTGTGGCAAGC+CGG | - | chr2_2:31787715-31787734 | Msa0248130:intron | 50.0% | |
| AGAAAGGCAGACAGAAAGGC+TGG | - | chr2_2:31787766-31787785 | Msa0248130:intron | 50.0% | |
| ! | ACAGAAAGGCTGGAGTGCTT+TGG | - | chr2_2:31787776-31787795 | Msa0248130:intron | 50.0% |
| ! | AAAGGCTGGAGTGCTTTGGT+AGG | - | chr2_2:31787780-31787799 | Msa0248130:intron | 50.0% |
| GTAATGTAGGGAACCCTCCA+CGG | - | chr2_2:31787846-31787865 | Msa0248130:intron | 50.0% | |
| TAATGTAGGGAACCCTCCAC+GGG | - | chr2_2:31787847-31787866 | Msa0248130:intron | 50.0% | |
| ! | GGAGTTTGAGATGAGGATGC+AGG | + | chr2_2:31787893-31787912 | None:intergenic | 50.0% |
| CATTGAAGTCATCCTCGTCG+TGG | + | chr2_2:31788048-31788067 | None:intergenic | 50.0% | |
| ! | TGACTGGACTGGGGCTTAAT+TGG | - | chr2_2:31788319-31788338 | Msa0248130:intron | 50.0% |
| CTGCAGAAAGGGAGGTAACA+AGG | - | chr2_2:31788652-31788671 | Msa0248130:intron | 50.0% | |
| TGGGTCACCTCCAGCGAATT+CGG | + | chr2_2:31785336-31785355 | None:intergenic | 55.0% | |
| TAGGGCTTGGACAGCAGCTA+TGG | - | chr2_2:31785787-31785806 | Msa0248130:intron | 55.0% | |
| AGGGCTTGGACAGCAGCTAT+GGG | - | chr2_2:31785788-31785807 | Msa0248130:intron | 55.0% | |
| AGCGCATGTTACCGGCACAT+AGG | - | chr2_2:31786271-31786290 | Msa0248130:intron | 55.0% | |
| ! | CTCATCATCGGTTGTGTGCG+TGG | - | chr2_2:31786862-31786881 | Msa0248130:intron | 55.0% |
| TGTGGGCAACTGCGCACATT+CGG | - | chr2_2:31787063-31787082 | Msa0248130:intron | 55.0% | |
| CGACACGCCCTTTCCAACAT+AGG | + | chr2_2:31787347-31787366 | None:intergenic | 55.0% | |
| ! | CTTTTCGCCTAACCCGTGGA+GGG | + | chr2_2:31787862-31787881 | None:intergenic | 55.0% |
| CTGGCTGTAGGCTGCAGAAA+GGG | - | chr2_2:31788641-31788660 | Msa0248130:intron | 55.0% | |
| ATTCGCTGGAGGTGACCCAG+AGG | - | chr2_2:31785337-31785356 | Msa0248130:three_prime_UTR | 60.0% | |
| GGGCTTGGACAGCAGCTATG+GGG | - | chr2_2:31785789-31785808 | Msa0248130:intron | 60.0% | |
| GTGGGCAACTGCGCACATTC+GGG | - | chr2_2:31787064-31787083 | Msa0248130:intron | 60.0% | |
| TGGGCAACTGCGCACATTCG+GGG | - | chr2_2:31787065-31787084 | Msa0248130:intron | 60.0% | |
| TAGGGAACCCTCCACGGGTT+AGG | - | chr2_2:31787852-31787871 | Msa0248130:intron | 60.0% | |
| ! | CCTTTTCGCCTAACCCGTGG+AGG | + | chr2_2:31787863-31787882 | None:intergenic | 60.0% |
| !! | CCTCCACGGGTTAGGCGAAA+AGG | - | chr2_2:31787860-31787879 | Msa0248130:intron | 60.0% |
| ! | CCACCTTTTCGCCTAACCCG+TGG | + | chr2_2:31787866-31787885 | None:intergenic | 60.0% |
| !! | CCACGGGTTAGGCGAAAAGG+TGG | - | chr2_2:31787863-31787882 | Msa0248130:intron | 60.0% |
| CCTTTCTGCAGCCTACAGCC+AGG | + | chr2_2:31788643-31788662 | None:intergenic | 60.0% | |
| CCTGGCTGTAGGCTGCAGAA+AGG | - | chr2_2:31788640-31788659 | Msa0248130:intron | 60.0% | |
| GCTGTAGGCTGCAGAAAGGG+AGG | - | chr2_2:31788644-31788663 | Msa0248130:intron | 60.0% | |
| GGACAGCAGCTATGGGGCAG+AGG | - | chr2_2:31785795-31785814 | Msa0248130:intron | 65.0% | |
| ! | GGAAAGGGCGTGTCGGTGCA+AGG | - | chr2_2:31787352-31787371 | Msa0248130:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 31785163 | 31788709 | 31785163 | ID=Msa0248130;Name=Msa0248130 |
| chr2_2 | mRNA | 31785163 | 31788709 | 31785163 | ID=Msa0248130-mRNA-1;Parent=Msa0248130;Name=Msa0248130-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.66|0.75|0.75|0.33|0|4|423|99 |
| chr2_2 | exon | 31785163 | 31785616 | 31785163 | ID=Msa0248130-mRNA-1:exon:10917;Parent=Msa0248130-mRNA-1 |
| chr2_2 | exon | 31787910 | 31788082 | 31787910 | ID=Msa0248130-mRNA-1:exon:10916;Parent=Msa0248130-mRNA-1 |
| chr2_2 | exon | 31788514 | 31788590 | 31788514 | ID=Msa0248130-mRNA-1:exon:10915;Parent=Msa0248130-mRNA-1 |
| chr2_2 | exon | 31788691 | 31788709 | 31788691 | ID=Msa0248130-mRNA-1:exon:10914;Parent=Msa0248130-mRNA-1 |
| chr2_2 | CDS | 31788691 | 31788709 | 31788691 | ID=Msa0248130-mRNA-1:cds;Parent=Msa0248130-mRNA-1 |
| chr2_2 | CDS | 31788514 | 31788590 | 31788514 | ID=Msa0248130-mRNA-1:cds;Parent=Msa0248130-mRNA-1 |
| chr2_2 | CDS | 31787910 | 31788082 | 31787910 | ID=Msa0248130-mRNA-1:cds;Parent=Msa0248130-mRNA-1 |
| chr2_2 | CDS | 31785586 | 31785616 | 31785586 | ID=Msa0248130-mRNA-1:cds;Parent=Msa0248130-mRNA-1 |
| chr2_2 | three_prime_UTR | 31785163 | 31785585 | 31785163 | ID=Msa0248130-mRNA-1:three_prime_utr;Parent=Msa0248130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
