Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888170 | XP_039690934.1 | 95.161 | 124 | 6 | 0 | 1 | 124 | 1 | 124 | 8.95e-71 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888170 | sp|O03982|HIP39_ARATH | 66.197 | 71 | 23 | 1 | 1 | 70 | 1 | 71 | 7.00e-24 | 93.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888170 | I3SS97 | 95.161 | 124 | 6 | 0 | 1 | 124 | 1 | 124 | 4.28e-71 | 218 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0888170 | Msa0914260 | 0.804276 | 2.334554e-49 | -8.615850e-47 |
| Msa0888170 | Msa0914290 | 0.834190 | 3.459325e-56 | -8.615850e-47 |
| Msa0888170 | Msa0952340 | 0.813311 | 2.728760e-51 | -8.615850e-47 |
| Msa0888170 | Msa0952360 | 0.808772 | 2.627867e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888170 | MtrunA17_Chr6g0469571 | 95.161 | 124 | 6 | 0 | 1 | 124 | 1 | 124 | 8.23e-75 | 218 |
| Msa0888170 | MtrunA17_Chr6g0469551 | 93.548 | 124 | 8 | 0 | 1 | 124 | 1 | 124 | 2.97e-74 | 216 |
| Msa0888170 | MtrunA17_Chr6g0469591 | 93.548 | 124 | 8 | 0 | 1 | 124 | 1 | 124 | 1.34e-73 | 214 |
| Msa0888170 | MtrunA17_Chr7g0233231 | 57.407 | 108 | 44 | 1 | 1 | 108 | 1 | 106 | 1.27e-38 | 125 |
| Msa0888170 | MtrunA17_Chr6g0469681 | 59.690 | 129 | 45 | 3 | 1 | 124 | 1 | 127 | 2.69e-38 | 125 |
| Msa0888170 | MtrunA17_Chr7g0233211 | 57.009 | 107 | 44 | 1 | 1 | 107 | 1 | 105 | 2.03e-37 | 122 |
| Msa0888170 | MtrunA17_Chr1g0202541 | 56.296 | 135 | 47 | 2 | 1 | 123 | 1 | 135 | 5.57e-37 | 122 |
| Msa0888170 | MtrunA17_Chr7g0233251 | 57.018 | 114 | 44 | 2 | 1 | 111 | 1 | 112 | 5.87e-37 | 121 |
| Msa0888170 | MtrunA17_Chr1g0202561 | 52.899 | 138 | 50 | 2 | 1 | 123 | 1 | 138 | 1.24e-36 | 122 |
| Msa0888170 | MtrunA17_Chr7g0233191 | 57.009 | 107 | 44 | 1 | 1 | 107 | 1 | 105 | 2.20e-36 | 120 |
| Msa0888170 | MtrunA17_Chr7g0233201 | 57.009 | 107 | 44 | 1 | 1 | 107 | 1 | 105 | 4.89e-36 | 119 |
| Msa0888170 | MtrunA17_Chr6g0469541 | 59.813 | 107 | 41 | 2 | 1 | 107 | 1 | 105 | 9.94e-36 | 118 |
| Msa0888170 | MtrunA17_Chr6g0469651 | 55.224 | 134 | 49 | 2 | 1 | 124 | 1 | 133 | 1.04e-35 | 119 |
| Msa0888170 | MtrunA17_Chr7g0233181 | 55.660 | 106 | 45 | 1 | 1 | 106 | 1 | 104 | 3.77e-35 | 117 |
| Msa0888170 | MtrunA17_Chr1g0202581 | 55.556 | 135 | 44 | 3 | 1 | 123 | 1 | 131 | 3.07e-34 | 115 |
| Msa0888170 | MtrunA17_Chr6g0469671 | 78.571 | 70 | 15 | 0 | 1 | 70 | 1 | 70 | 4.38e-34 | 114 |
| Msa0888170 | MtrunA17_Chr8g0387471 | 49.618 | 131 | 55 | 3 | 1 | 124 | 1 | 127 | 2.96e-33 | 112 |
| Msa0888170 | MtrunA17_Chr1g0202501 | 50.000 | 134 | 53 | 3 | 1 | 124 | 1 | 130 | 7.32e-33 | 112 |
| Msa0888170 | MtrunA17_Chr1g0204291 | 51.852 | 135 | 49 | 4 | 1 | 123 | 1 | 131 | 1.14e-32 | 111 |
| Msa0888170 | MtrunA17_Chr7g0248671 | 61.765 | 68 | 26 | 0 | 1 | 68 | 1 | 68 | 6.35e-24 | 90.5 |
| Msa0888170 | MtrunA17_Chr8g0348361 | 39.844 | 128 | 52 | 1 | 22 | 124 | 22 | 149 | 5.36e-15 | 67.0 |
| Msa0888170 | MtrunA17_Chr3g0120541 | 44.444 | 81 | 41 | 4 | 3 | 79 | 5 | 85 | 6.00e-14 | 63.2 |
| Msa0888170 | MtrunA17_Chr5g0404641 | 31.373 | 153 | 73 | 4 | 3 | 123 | 4 | 156 | 2.04e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888170 | AT1G01490.1 | 66.197 | 71 | 23 | 1 | 1 | 70 | 1 | 71 | 7.12e-25 | 93.6 |
| Msa0888170 | AT1G01490.2 | 66.197 | 71 | 23 | 1 | 1 | 70 | 1 | 71 | 7.12e-25 | 93.6 |
| Msa0888170 | AT1G01490.4 | 65.714 | 70 | 23 | 1 | 2 | 70 | 29 | 98 | 2.49e-24 | 92.8 |
| Msa0888170 | AT5G52740.1 | 55.714 | 70 | 29 | 1 | 1 | 70 | 1 | 68 | 7.66e-19 | 76.3 |
| Msa0888170 | AT5G52760.1 | 41.176 | 102 | 54 | 3 | 5 | 105 | 7 | 103 | 2.21e-15 | 67.8 |
| Msa0888170 | AT5G52750.1 | 45.455 | 66 | 36 | 0 | 2 | 67 | 4 | 69 | 5.14e-13 | 62.0 |
| Msa0888170 | AT1G63950.2 | 28.000 | 125 | 80 | 2 | 1 | 124 | 1 | 116 | 4.57e-11 | 56.2 |
Find 32 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGACAGTCTCTGGCCTTTC+AGG | 0.146342 | 6_1:+52352487 | Msa0888170:CDS |
| AACCAACAGCTCTGATTTAT+TGG | 0.196653 | 6_1:+52352288 | Msa0888170:five_prime_UTR |
| AGACTTCAAGTAATTGAATT+TGG | 0.223914 | 6_1:-52353037 | None:intergenic |
| TTGAAGATGAAAAGTGTTAT+AGG | 0.257481 | 6_1:-52352225 | None:intergenic |
| GACAAGAAATTAACCTTAAC+TGG | 0.272704 | 6_1:+52352891 | Msa0888170:CDS |
| TGTATTTCTTATACTTTCAA+TGG | 0.370006 | 6_1:-52353307 | None:intergenic |
| ATATTCCTCTGTTTCAAGAA+TGG | 0.394512 | 6_1:+52353100 | Msa0888170:CDS |
| TAAAAGAAGAGCCAGGGTAT+TGG | 0.407517 | 6_1:-52352259 | None:intergenic |
| TGGATCTGTGTCTCCAGTTA+AGG | 0.422934 | 6_1:-52352904 | None:intergenic |
| ATTTGGTCCTTCTTCACATC+CGG | 0.427221 | 6_1:-52353020 | None:intergenic |
| TTAACAGAAACTAGTATTGA+AGG | 0.442263 | 6_1:+52352426 | Msa0888170:intron |
| AGCTTTATTGAAATTAATGA+TGG | 0.446473 | 6_1:+52352320 | Msa0888170:exon |
| AGCTTACTTACTACATGTAC+TGG | 0.457206 | 6_1:-52352924 | None:intergenic |
| TAAAATTTAAAAGAAGAGCC+AGG | 0.474794 | 6_1:-52352266 | None:intergenic |
| ATGCTGAAATAGTTTCTGTT+GGG | 0.476513 | 6_1:+52352961 | Msa0888170:CDS |
| AAAGCTATGAAGACAGTCTC+TGG | 0.487579 | 6_1:+52352478 | Msa0888170:CDS |
| CATGCTGAAATAGTTTCTGT+TGG | 0.500770 | 6_1:+52352960 | Msa0888170:CDS |
| TAGTAAGTAAGCTAAGGAAA+TGG | 0.502836 | 6_1:+52352934 | Msa0888170:CDS |
| CAGCATATGACACATCCAAC+AGG | 0.518380 | 6_1:-52353131 | None:intergenic |
| ATCTAAGCCGGATGTGAAGA+AGG | 0.520357 | 6_1:+52353013 | Msa0888170:CDS |
| GACCAATAAATCAGAGCTGT+TGG | 0.529385 | 6_1:-52352290 | None:intergenic |
| GAGGAATATTGAATATATTG+TGG | 0.535752 | 6_1:-52353086 | None:intergenic |
| TACATGTAGTAAGTAAGCTA+AGG | 0.555076 | 6_1:+52352928 | Msa0888170:CDS |
| AAAATTTAAAAGAAGAGCCA+GGG | 0.576568 | 6_1:-52352265 | None:intergenic |
| TTGTTCCATTCTTGAAACAG+AGG | 0.577364 | 6_1:-52353105 | None:intergenic |
| GAAGAAAGAAGAATCTAAGC+CGG | 0.577768 | 6_1:+52353001 | Msa0888170:CDS |
| ACAGAAACTAGTATTGAAGG+TGG | 0.588633 | 6_1:+52352429 | Msa0888170:intron |
| ATTCTATAGCTCCAATACCC+TGG | 0.617469 | 6_1:+52352248 | Msa0888170:five_prime_UTR |
| ACATGTCGACATTACCTGAA+AGG | 0.624790 | 6_1:-52352501 | None:intergenic |
| AGAATGGAACAAGATCCTGT+TGG | 0.628668 | 6_1:+52353116 | Msa0888170:CDS |
| GTGTTCAATTGTGCAAACAA+AGG | 0.635392 | 6_1:+52353262 | Msa0888170:three_prime_UTR |
| TGTTGCATATGATAATAATG+AGG | 0.657518 | 6_1:-52353062 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTAATAGTAAAAGA+GGG | - | chr6_1:52352369-52352388 | None:intergenic | 10.0% |
| !!! | TGTATTTTCATATTATTTAT+TGG | + | chr6_1:52353179-52353198 | Msa0888170:three_prime_UTR | 10.0% |
| !! | AAAAAATTAATAGTAAAAGA+GGG | - | chr6_1:52352369-52352388 | None:intergenic | 10.0% |
| !!! | TGTATTTTCATATTATTTAT+TGG | + | chr6_1:52353179-52353198 | Msa0888170:three_prime_UTR | 10.0% |
| !! | GAAAAAATTAATAGTAAAAG+AGG | - | chr6_1:52352370-52352389 | None:intergenic | 15.0% |
| !!! | TTATTTTGCTAAAATTGTAT+TGG | + | chr6_1:52352825-52352844 | Msa0888170:intron | 15.0% |
| !!! | ATTTTTATATTGTTTTTGAG+TGG | + | chr6_1:52353216-52353235 | Msa0888170:three_prime_UTR | 15.0% |
| !! | GAAAAAATTAATAGTAAAAG+AGG | - | chr6_1:52352370-52352389 | None:intergenic | 15.0% |
| !!! | TTATTTTGCTAAAATTGTAT+TGG | + | chr6_1:52352825-52352844 | Msa0888170:intron | 15.0% |
| !!! | ATTTTTATATTGTTTTTGAG+TGG | + | chr6_1:52353216-52353235 | Msa0888170:three_prime_UTR | 15.0% |
| !!! | AGCTTTATTGAAATTAATGA+TGG | + | chr6_1:52352320-52352339 | Msa0888170:exon | 20.0% |
| !! | TTCACATTATTTAATCTTGA+GGG | + | chr6_1:52352630-52352649 | Msa0888170:intron | 20.0% |
| !! | TCAAATTATGACGTAAAAAA+GGG | - | chr6_1:52352672-52352691 | None:intergenic | 20.0% |
| !! | TTCAAATTATGACGTAAAAA+AGG | - | chr6_1:52352673-52352692 | None:intergenic | 20.0% |
| !! | TGTATTTCTTATACTTTCAA+TGG | - | chr6_1:52353310-52353329 | None:intergenic | 20.0% |
| !!! | AGCTTTATTGAAATTAATGA+TGG | + | chr6_1:52352320-52352339 | Msa0888170:exon | 20.0% |
| !! | TTCACATTATTTAATCTTGA+GGG | + | chr6_1:52352630-52352649 | Msa0888170:intron | 20.0% |
| !! | TCAAATTATGACGTAAAAAA+GGG | - | chr6_1:52352672-52352691 | None:intergenic | 20.0% |
| !! | TTCAAATTATGACGTAAAAA+AGG | - | chr6_1:52352673-52352692 | None:intergenic | 20.0% |
| !! | TGTATTTCTTATACTTTCAA+TGG | - | chr6_1:52353310-52353329 | None:intergenic | 20.0% |
| !!! | TTGAAGATGAAAAGTGTTAT+AGG | - | chr6_1:52352228-52352247 | None:intergenic | 25.0% |
| ! | AAAATTTAAAAGAAGAGCCA+GGG | - | chr6_1:52352268-52352287 | None:intergenic | 25.0% |
| ! | TAAAATTTAAAAGAAGAGCC+AGG | - | chr6_1:52352269-52352288 | None:intergenic | 25.0% |
| !! | TTAACAGAAACTAGTATTGA+AGG | + | chr6_1:52352426-52352445 | Msa0888170:intron | 25.0% |
| !!! | ACATGTCTAGTTTCAATTTT+TGG | + | chr6_1:52352518-52352537 | Msa0888170:intron | 25.0% |
| ! | CTCAAGATTAAATAATGTGA+AGG | - | chr6_1:52352631-52352650 | None:intergenic | 25.0% |
| ! | CTTCACATTATTTAATCTTG+AGG | + | chr6_1:52352629-52352648 | Msa0888170:intron | 25.0% |
| !! | TGTATTGGTATATTATTTGC+AGG | + | chr6_1:52352840-52352859 | Msa0888170:intron | 25.0% |
| !! | GTATTGGTATATTATTTGCA+GGG | + | chr6_1:52352841-52352860 | Msa0888170:intron | 25.0% |
| ! | TATTGGTATATTATTTGCAG+GGG | + | chr6_1:52352842-52352861 | Msa0888170:intron | 25.0% |
| ! | AGACTTCAAGTAATTGAATT+TGG | - | chr6_1:52353040-52353059 | None:intergenic | 25.0% |
| ! | TGTTGCATATGATAATAATG+AGG | - | chr6_1:52353065-52353084 | None:intergenic | 25.0% |
| ! | GAGGAATATTGAATATATTG+TGG | - | chr6_1:52353089-52353108 | None:intergenic | 25.0% |
| !!! | TTGAAGATGAAAAGTGTTAT+AGG | - | chr6_1:52352228-52352247 | None:intergenic | 25.0% |
| ! | AAAATTTAAAAGAAGAGCCA+GGG | - | chr6_1:52352268-52352287 | None:intergenic | 25.0% |
| ! | TAAAATTTAAAAGAAGAGCC+AGG | - | chr6_1:52352269-52352288 | None:intergenic | 25.0% |
| !! | TTAACAGAAACTAGTATTGA+AGG | + | chr6_1:52352426-52352445 | Msa0888170:intron | 25.0% |
| !!! | ACATGTCTAGTTTCAATTTT+TGG | + | chr6_1:52352518-52352537 | Msa0888170:intron | 25.0% |
| ! | CTCAAGATTAAATAATGTGA+AGG | - | chr6_1:52352631-52352650 | None:intergenic | 25.0% |
| ! | CTTCACATTATTTAATCTTG+AGG | + | chr6_1:52352629-52352648 | Msa0888170:intron | 25.0% |
| !! | TGTATTGGTATATTATTTGC+AGG | + | chr6_1:52352840-52352859 | Msa0888170:intron | 25.0% |
| !! | GTATTGGTATATTATTTGCA+GGG | + | chr6_1:52352841-52352860 | Msa0888170:intron | 25.0% |
| ! | TATTGGTATATTATTTGCAG+GGG | + | chr6_1:52352842-52352861 | Msa0888170:intron | 25.0% |
| ! | AGACTTCAAGTAATTGAATT+TGG | - | chr6_1:52353040-52353059 | None:intergenic | 25.0% |
| ! | TGTTGCATATGATAATAATG+AGG | - | chr6_1:52353065-52353084 | None:intergenic | 25.0% |
| ! | GAGGAATATTGAATATATTG+TGG | - | chr6_1:52353089-52353108 | None:intergenic | 25.0% |
| GACAAGAAATTAACCTTAAC+TGG | + | chr6_1:52352891-52352910 | Msa0888170:CDS | 30.0% | |
| TACATGTAGTAAGTAAGCTA+AGG | + | chr6_1:52352928-52352947 | Msa0888170:CDS | 30.0% | |
| TAGTAAGTAAGCTAAGGAAA+TGG | + | chr6_1:52352934-52352953 | Msa0888170:CDS | 30.0% | |
| ATGCTGAAATAGTTTCTGTT+GGG | + | chr6_1:52352961-52352980 | Msa0888170:CDS | 30.0% | |
| ! | TTCTTCTTTTCATCTTTTGC+AGG | - | chr6_1:52352987-52353006 | None:intergenic | 30.0% |
| ATATTCCTCTGTTTCAAGAA+TGG | + | chr6_1:52353100-52353119 | Msa0888170:CDS | 30.0% | |
| GACAAGAAATTAACCTTAAC+TGG | + | chr6_1:52352891-52352910 | Msa0888170:CDS | 30.0% | |
| TACATGTAGTAAGTAAGCTA+AGG | + | chr6_1:52352928-52352947 | Msa0888170:CDS | 30.0% | |
| TAGTAAGTAAGCTAAGGAAA+TGG | + | chr6_1:52352934-52352953 | Msa0888170:CDS | 30.0% | |
| ATGCTGAAATAGTTTCTGTT+GGG | + | chr6_1:52352961-52352980 | Msa0888170:CDS | 30.0% | |
| ! | TTCTTCTTTTCATCTTTTGC+AGG | - | chr6_1:52352987-52353006 | None:intergenic | 30.0% |
| ATATTCCTCTGTTTCAAGAA+TGG | + | chr6_1:52353100-52353119 | Msa0888170:CDS | 30.0% | |
| ! | AACCAACAGCTCTGATTTAT+TGG | + | chr6_1:52352288-52352307 | Msa0888170:five_prime_UTR | 35.0% |
| AGTAAAAGAGGGAATTCACA+AGG | - | chr6_1:52352358-52352377 | None:intergenic | 35.0% | |
| ! | ACAGAAACTAGTATTGAAGG+TGG | + | chr6_1:52352429-52352448 | Msa0888170:intron | 35.0% |
| ! | TGTCTTCATAGCTTTTTGCT+TGG | - | chr6_1:52352473-52352492 | None:intergenic | 35.0% |
| AGCTTACTTACTACATGTAC+TGG | - | chr6_1:52352927-52352946 | None:intergenic | 35.0% | |
| CATGCTGAAATAGTTTCTGT+TGG | + | chr6_1:52352960-52352979 | Msa0888170:CDS | 35.0% | |
| GAAGAAAGAAGAATCTAAGC+CGG | + | chr6_1:52353001-52353020 | Msa0888170:CDS | 35.0% | |
| TTGTTCCATTCTTGAAACAG+AGG | - | chr6_1:52353108-52353127 | None:intergenic | 35.0% | |
| GTGTTCAATTGTGCAAACAA+AGG | + | chr6_1:52353262-52353281 | Msa0888170:three_prime_UTR | 35.0% | |
| ! | AACCAACAGCTCTGATTTAT+TGG | + | chr6_1:52352288-52352307 | Msa0888170:five_prime_UTR | 35.0% |
| AGTAAAAGAGGGAATTCACA+AGG | - | chr6_1:52352358-52352377 | None:intergenic | 35.0% | |
| ! | ACAGAAACTAGTATTGAAGG+TGG | + | chr6_1:52352429-52352448 | Msa0888170:intron | 35.0% |
| ! | TGTCTTCATAGCTTTTTGCT+TGG | - | chr6_1:52352473-52352492 | None:intergenic | 35.0% |
| AGCTTACTTACTACATGTAC+TGG | - | chr6_1:52352927-52352946 | None:intergenic | 35.0% | |
| CATGCTGAAATAGTTTCTGT+TGG | + | chr6_1:52352960-52352979 | Msa0888170:CDS | 35.0% | |
| GAAGAAAGAAGAATCTAAGC+CGG | + | chr6_1:52353001-52353020 | Msa0888170:CDS | 35.0% | |
| TTGTTCCATTCTTGAAACAG+AGG | - | chr6_1:52353108-52353127 | None:intergenic | 35.0% | |
| GTGTTCAATTGTGCAAACAA+AGG | + | chr6_1:52353262-52353281 | Msa0888170:three_prime_UTR | 35.0% | |
| ATTCTATAGCTCCAATACCC+TGG | + | chr6_1:52352248-52352267 | Msa0888170:five_prime_UTR | 40.0% | |
| TAAAAGAAGAGCCAGGGTAT+TGG | - | chr6_1:52352262-52352281 | None:intergenic | 40.0% | |
| GACCAATAAATCAGAGCTGT+TGG | - | chr6_1:52352293-52352312 | None:intergenic | 40.0% | |
| AAAGCTATGAAGACAGTCTC+TGG | + | chr6_1:52352478-52352497 | Msa0888170:CDS | 40.0% | |
| ACATGTCGACATTACCTGAA+AGG | - | chr6_1:52352504-52352523 | None:intergenic | 40.0% | |
| ATTTGGTCCTTCTTCACATC+CGG | - | chr6_1:52353023-52353042 | None:intergenic | 40.0% | |
| AGAATGGAACAAGATCCTGT+TGG | + | chr6_1:52353116-52353135 | Msa0888170:CDS | 40.0% | |
| ATTCTATAGCTCCAATACCC+TGG | + | chr6_1:52352248-52352267 | Msa0888170:five_prime_UTR | 40.0% | |
| TAAAAGAAGAGCCAGGGTAT+TGG | - | chr6_1:52352262-52352281 | None:intergenic | 40.0% | |
| GACCAATAAATCAGAGCTGT+TGG | - | chr6_1:52352293-52352312 | None:intergenic | 40.0% | |
| AAAGCTATGAAGACAGTCTC+TGG | + | chr6_1:52352478-52352497 | Msa0888170:CDS | 40.0% | |
| ACATGTCGACATTACCTGAA+AGG | - | chr6_1:52352504-52352523 | None:intergenic | 40.0% | |
| ATTTGGTCCTTCTTCACATC+CGG | - | chr6_1:52353023-52353042 | None:intergenic | 40.0% | |
| AGAATGGAACAAGATCCTGT+TGG | + | chr6_1:52353116-52353135 | Msa0888170:CDS | 40.0% | |
| TGGATCTGTGTCTCCAGTTA+AGG | - | chr6_1:52352907-52352926 | None:intergenic | 45.0% | |
| ATCTAAGCCGGATGTGAAGA+AGG | + | chr6_1:52353013-52353032 | Msa0888170:CDS | 45.0% | |
| CAGCATATGACACATCCAAC+AGG | - | chr6_1:52353134-52353153 | None:intergenic | 45.0% | |
| TGGATCTGTGTCTCCAGTTA+AGG | - | chr6_1:52352907-52352926 | None:intergenic | 45.0% | |
| ATCTAAGCCGGATGTGAAGA+AGG | + | chr6_1:52353013-52353032 | Msa0888170:CDS | 45.0% | |
| CAGCATATGACACATCCAAC+AGG | - | chr6_1:52353134-52353153 | None:intergenic | 45.0% | |
| !!! | TTTATTTTTAAATTGAAAAA+TGG | - | chr6_1:52352731-52352750 | None:intergenic | 5.0% |
| !!! | TTTATTTTTAAATTGAAAAA+TGG | - | chr6_1:52352731-52352750 | None:intergenic | 5.0% |
| ! | AAGACAGTCTCTGGCCTTTC+AGG | + | chr6_1:52352487-52352506 | Msa0888170:CDS | 50.0% |
| ! | AAGACAGTCTCTGGCCTTTC+AGG | + | chr6_1:52352487-52352506 | Msa0888170:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 52352202 | 52353338 | 52352202 | ID=Msa0888170;Name=Msa0888170 |
| chr6_1 | mRNA | 52352202 | 52353338 | 52352202 | ID=Msa0888170-mRNA-1;Parent=Msa0888170;Name=Msa0888170-mRNA-1;_AED=0.18;_eAED=0.18;_QI=134|1|1|1|1|1|3|184|124 |
| chr6_1 | exon | 52352202 | 52352341 | 52352202 | ID=Msa0888170-mRNA-1:exon:10516;Parent=Msa0888170-mRNA-1 |
| chr6_1 | exon | 52352433 | 52352508 | 52352433 | ID=Msa0888170-mRNA-1:exon:10517;Parent=Msa0888170-mRNA-1 |
| chr6_1 | exon | 52352862 | 52353338 | 52352862 | ID=Msa0888170-mRNA-1:exon:10518;Parent=Msa0888170-mRNA-1 |
| chr6_1 | five_prime_UTR | 52352202 | 52352335 | 52352202 | ID=Msa0888170-mRNA-1:five_prime_utr;Parent=Msa0888170-mRNA-1 |
| chr6_1 | CDS | 52352336 | 52352341 | 52352336 | ID=Msa0888170-mRNA-1:cds;Parent=Msa0888170-mRNA-1 |
| chr6_1 | CDS | 52352433 | 52352508 | 52352433 | ID=Msa0888170-mRNA-1:cds;Parent=Msa0888170-mRNA-1 |
| chr6_1 | CDS | 52352862 | 52353154 | 52352862 | ID=Msa0888170-mRNA-1:cds;Parent=Msa0888170-mRNA-1 |
| chr6_1 | three_prime_UTR | 52353155 | 52353338 | 52353155 | ID=Msa0888170-mRNA-1:three_prime_utr;Parent=Msa0888170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
