Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0914290 | XP_039690934.1 | 95.968 | 124 | 5 | 0 | 1 | 124 | 1 | 124 | 3.93e-71 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0914290 | sp|O03982|HIP39_ARATH | 67.606 | 71 | 22 | 1 | 1 | 70 | 1 | 71 | 1.30e-24 | 95.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0085290 | Msa0914290 | 0.842072 | 3.232464e-58 | -8.615850e-47 |
| Msa0106530 | Msa0914290 | 0.805583 | 1.244333e-49 | -8.615850e-47 |
| Msa0813260 | Msa0914290 | 0.805629 | 1.216947e-49 | -8.615850e-47 |
| Msa0825870 | Msa0914290 | 0.828836 | 7.204018e-55 | -8.615850e-47 |
| Msa0131420 | Msa0914290 | 0.809208 | 2.120050e-50 | -8.615850e-47 |
| Msa0202580 | Msa0914290 | 0.820269 | 7.500389e-53 | -8.615850e-47 |
| Msa0269810 | Msa0914290 | 0.818829 | 1.598300e-52 | -8.615850e-47 |
| Msa0574570 | Msa0914290 | 0.812459 | 4.193965e-51 | -8.615850e-47 |
| Msa0588870 | Msa0914290 | 0.804039 | 2.615253e-49 | -8.615850e-47 |
| Msa0599150 | Msa0914290 | 0.827515 | 1.498896e-54 | -8.615850e-47 |
| Msa0865330 | Msa0914290 | 0.807989 | 3.860475e-50 | -8.615850e-47 |
| Msa0870060 | Msa0914290 | 0.807245 | 5.553714e-50 | -8.615850e-47 |
| Msa0887950 | Msa0914290 | 0.839234 | 1.790417e-57 | -8.615850e-47 |
| Msa0887960 | Msa0914290 | 0.872181 | 3.873055e-67 | -8.615850e-47 |
| Msa0888170 | Msa0914290 | 0.834190 | 3.459325e-56 | -8.615850e-47 |
| Msa0914260 | Msa0914290 | 0.921750 | 2.395814e-88 | -8.615850e-47 |
| Msa0914290 | Msa0952340 | 0.892329 | 1.755583e-74 | -8.615850e-47 |
| Msa0914290 | Msa0952360 | 0.975406 | 6.793498e-140 | -8.615850e-47 |
| Msa0914290 | Msa0964130 | 0.821573 | 3.757154e-53 | -8.615850e-47 |
| Msa0914290 | Msa1177330 | 0.866763 | 2.247317e-65 | -8.615850e-47 |
| Msa0914290 | Msa1182130 | 0.817516 | 3.166837e-52 | -8.615850e-47 |
| Msa0914290 | Msa1225100 | 0.815610 | 8.462286e-52 | -8.615850e-47 |
| Msa0914290 | Msa1236730 | 0.885751 | 6.204285e-72 | -8.615850e-47 |
| Msa0914290 | Msa1246700 | 0.830027 | 3.700596e-55 | -8.615850e-47 |
| Msa0914290 | Msa1317130 | 0.875325 | 3.369116e-68 | -8.615850e-47 |
| Msa0914290 | Msa1329870 | 0.816934 | 4.280225e-52 | -8.615850e-47 |
| Msa0914290 | Msa1344890 | 0.890736 | 7.522425e-74 | -8.615850e-47 |
| Msa0914290 | Msa1353880 | 0.804278 | 2.332917e-49 | -8.615850e-47 |
| Msa0914290 | Msa1365270 | 0.824468 | 7.940521e-54 | -8.615850e-47 |
| Msa0914290 | Msa1376450 | 0.830784 | 2.416364e-55 | -8.615850e-47 |
| Msa0914290 | Msa1391550 | 0.834749 | 2.504184e-56 | -8.615850e-47 |
| Msa0914290 | Msa1405220 | 0.818004 | 2.457617e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0914290 | MtrunA17_Chr6g0469571 | 95.968 | 124 | 5 | 0 | 1 | 124 | 1 | 124 | 3.62e-75 | 218 |
| Msa0914290 | MtrunA17_Chr6g0469551 | 94.355 | 124 | 7 | 0 | 1 | 124 | 1 | 124 | 1.31e-74 | 217 |
| Msa0914290 | MtrunA17_Chr6g0469591 | 94.355 | 124 | 7 | 0 | 1 | 124 | 1 | 124 | 1.70e-73 | 214 |
| Msa0914290 | MtrunA17_Chr6g0469681 | 61.240 | 129 | 43 | 3 | 1 | 124 | 1 | 127 | 6.57e-39 | 127 |
| Msa0914290 | MtrunA17_Chr1g0202541 | 57.037 | 135 | 46 | 2 | 1 | 123 | 1 | 135 | 1.75e-37 | 124 |
| Msa0914290 | MtrunA17_Chr7g0233231 | 56.481 | 108 | 45 | 1 | 1 | 108 | 1 | 106 | 4.41e-37 | 122 |
| Msa0914290 | MtrunA17_Chr6g0469651 | 56.716 | 134 | 47 | 2 | 1 | 124 | 1 | 133 | 1.49e-36 | 121 |
| Msa0914290 | MtrunA17_Chr7g0233211 | 56.075 | 107 | 45 | 1 | 1 | 107 | 1 | 105 | 5.69e-36 | 119 |
| Msa0914290 | MtrunA17_Chr1g0202561 | 52.174 | 138 | 51 | 2 | 1 | 123 | 1 | 138 | 1.06e-35 | 119 |
| Msa0914290 | MtrunA17_Chr7g0233251 | 56.140 | 114 | 45 | 2 | 1 | 111 | 1 | 112 | 2.14e-35 | 117 |
| Msa0914290 | MtrunA17_Chr7g0233191 | 56.075 | 107 | 45 | 1 | 1 | 107 | 1 | 105 | 4.54e-35 | 117 |
| Msa0914290 | MtrunA17_Chr7g0233201 | 56.075 | 107 | 45 | 1 | 1 | 107 | 1 | 105 | 9.55e-35 | 116 |
| Msa0914290 | MtrunA17_Chr6g0469541 | 57.944 | 107 | 43 | 2 | 1 | 107 | 1 | 105 | 1.55e-34 | 115 |
| Msa0914290 | MtrunA17_Chr6g0469671 | 78.571 | 70 | 15 | 0 | 1 | 70 | 1 | 70 | 1.57e-34 | 115 |
| Msa0914290 | MtrunA17_Chr1g0202581 | 55.556 | 135 | 44 | 3 | 1 | 123 | 1 | 131 | 5.13e-34 | 115 |
| Msa0914290 | MtrunA17_Chr7g0233181 | 54.717 | 106 | 46 | 1 | 1 | 106 | 1 | 104 | 7.06e-34 | 113 |
| Msa0914290 | MtrunA17_Chr8g0387471 | 49.618 | 131 | 55 | 3 | 1 | 124 | 1 | 127 | 1.39e-33 | 113 |
| Msa0914290 | MtrunA17_Chr1g0204291 | 52.593 | 135 | 48 | 4 | 1 | 123 | 1 | 131 | 2.26e-32 | 110 |
| Msa0914290 | MtrunA17_Chr1g0202501 | 49.254 | 134 | 54 | 3 | 1 | 124 | 1 | 130 | 4.01e-32 | 110 |
| Msa0914290 | MtrunA17_Chr7g0248671 | 61.765 | 68 | 26 | 0 | 1 | 68 | 1 | 68 | 3.15e-24 | 91.3 |
| Msa0914290 | MtrunA17_Chr8g0348361 | 67.647 | 68 | 22 | 0 | 1 | 68 | 1 | 68 | 1.44e-15 | 68.2 |
| Msa0914290 | MtrunA17_Chr3g0120541 | 41.975 | 81 | 43 | 4 | 3 | 79 | 5 | 85 | 8.07e-13 | 60.5 |
| Msa0914290 | MtrunA17_Chr5g0404641 | 30.719 | 153 | 74 | 4 | 3 | 123 | 4 | 156 | 2.34e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0914290 | AT1G01490.1 | 67.606 | 71 | 22 | 1 | 1 | 70 | 1 | 71 | 1.32e-25 | 95.1 |
| Msa0914290 | AT1G01490.2 | 67.606 | 71 | 22 | 1 | 1 | 70 | 1 | 71 | 1.32e-25 | 95.1 |
| Msa0914290 | AT1G01490.4 | 67.143 | 70 | 22 | 1 | 2 | 70 | 29 | 98 | 4.92e-25 | 94.4 |
| Msa0914290 | AT5G52740.1 | 55.714 | 70 | 29 | 1 | 1 | 70 | 1 | 68 | 4.14e-18 | 74.3 |
| Msa0914290 | AT5G52760.1 | 43.269 | 104 | 49 | 4 | 5 | 105 | 7 | 103 | 1.40e-16 | 70.9 |
| Msa0914290 | AT5G52750.1 | 45.455 | 66 | 36 | 0 | 2 | 67 | 4 | 69 | 1.93e-13 | 62.8 |
| Msa0914290 | AT5G23760.1 | 52.174 | 69 | 32 | 1 | 3 | 70 | 4 | 72 | 2.95e-11 | 56.2 |
| Msa0914290 | AT1G63960.2 | 35.714 | 70 | 44 | 1 | 1 | 69 | 11 | 80 | 6.14e-11 | 56.6 |
| Msa0914290 | AT1G63950.2 | 30.400 | 125 | 77 | 3 | 1 | 124 | 1 | 116 | 6.36e-11 | 55.8 |
Find 27 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACAACAATTCTGATTTAT+TGG | 0.145112 | 6_2:+27772592 | Msa0914290:five_prime_UTR |
| AAGACAGTCTCTGGCCTTTC+AGG | 0.146342 | 6_2:+27772794 | Msa0914290:CDS |
| GACAAGAAATTAACCTTAAT+TGG | 0.151973 | 6_2:+27773435 | Msa0914290:CDS |
| TTATATTTCATATGATTTAT+TGG | 0.157338 | 6_2:+27773724 | Msa0914290:three_prime_UTR |
| TGGATCTGTGTCTCCAATTA+AGG | 0.276564 | 6_2:-27773448 | None:intergenic |
| TTATTGGATTTGTAACATAT+TGG | 0.298794 | 6_2:+27773740 | Msa0914290:three_prime_UTR |
| ATTTGATTCTTCTTCACATC+AGG | 0.383077 | 6_2:-27773564 | None:intergenic |
| ATATTCCTCTGTTTCAAGAA+TGG | 0.394512 | 6_2:+27773644 | Msa0914290:CDS |
| TAAAAGAAGAGCTAGGGTAT+TGG | 0.399065 | 6_2:-27772563 | None:intergenic |
| TAAAATTTAAAAGAAGAGCT+AGG | 0.408169 | 6_2:-27772570 | None:intergenic |
| AGTTTACTTACTACATGTAC+TGG | 0.438622 | 6_2:-27773468 | None:intergenic |
| AAAAGCTTTATTGAAAATGA+TGG | 0.441720 | 6_2:+27772620 | Msa0914290:exon |
| GTTACAGAAACTAGTATTGA+AGG | 0.451235 | 6_2:+27772733 | Msa0914290:intron |
| TAGTAAGTAAACTAAGGAAA+TGG | 0.475788 | 6_2:+27773478 | Msa0914290:CDS |
| ATGCTGAAATAGTTTCTGTT+GGG | 0.476513 | 6_2:+27773505 | Msa0914290:CDS |
| AAAGCTATGAAGACAGTCTC+TGG | 0.487579 | 6_2:+27772785 | Msa0914290:CDS |
| AAAATTTAAAAGAAGAGCTA+GGG | 0.497403 | 6_2:-27772569 | None:intergenic |
| CATGCTGAAATAGTTTCTGT+TGG | 0.500770 | 6_2:+27773504 | Msa0914290:CDS |
| TACATGTAGTAAGTAAACTA+AGG | 0.515410 | 6_2:+27773472 | Msa0914290:CDS |
| CAGCATATGACACATCCAAC+AGG | 0.518380 | 6_2:-27773675 | None:intergenic |
| GAGGAATATTGAATATATTG+TGG | 0.535752 | 6_2:-27773630 | None:intergenic |
| TTGTTCCATTCTTGAAACAG+AGG | 0.577364 | 6_2:-27773649 | None:intergenic |
| CATGTAGTAATAATGAGGAT+AGG | 0.591628 | 6_2:-27773601 | None:intergenic |
| ACATATTGACATTACCTGAA+AGG | 0.607504 | 6_2:-27772808 | None:intergenic |
| AGAATGGAACAAGATCCTGT+TGG | 0.628668 | 6_2:+27773660 | Msa0914290:CDS |
| TGTTGCATGTAGTAATAATG+AGG | 0.650568 | 6_2:-27773606 | None:intergenic |
| ACAGAAACTAGTATTGAAGG+TGG | 0.658613 | 6_2:+27772736 | Msa0914290:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGTTAAAAAATTGAAAAA+TGG | - | chr6_2:27773072-27773091 | None:intergenic | 10.0% |
| !! | TAATAATATATTTATCTACA+CGG | + | chr6_2:27773264-27773283 | Msa0914290:intron | 10.0% |
| !! | TTATATTTCATATGATTTAT+TGG | + | chr6_2:27773724-27773743 | Msa0914290:three_prime_UTR | 10.0% |
| !! | TTTGTTAAAAAATTGAAAAA+TGG | - | chr6_2:27773072-27773091 | None:intergenic | 10.0% |
| !! | TAATAATATATTTATCTACA+CGG | + | chr6_2:27773264-27773283 | Msa0914290:intron | 10.0% |
| !! | TTATATTTCATATGATTTAT+TGG | + | chr6_2:27773724-27773743 | Msa0914290:three_prime_UTR | 10.0% |
| !! | AATAATGCATGATTAAAATA+TGG | - | chr6_2:27772938-27772957 | None:intergenic | 15.0% |
| !!! | AATTTTAGCAAAAAACTTAA+AGG | - | chr6_2:27773365-27773384 | None:intergenic | 15.0% |
| !! | AACATATTGGAAAAAATAAA+AGG | + | chr6_2:27773753-27773772 | Msa0914290:three_prime_UTR | 15.0% |
| !! | AATAATGCATGATTAAAATA+TGG | - | chr6_2:27772938-27772957 | None:intergenic | 15.0% |
| !!! | AATTTTAGCAAAAAACTTAA+AGG | - | chr6_2:27773365-27773384 | None:intergenic | 15.0% |
| !! | AACATATTGGAAAAAATAAA+AGG | + | chr6_2:27773753-27773772 | Msa0914290:three_prime_UTR | 15.0% |
| !! | AAAATTTAAAAGAAGAGCTA+GGG | - | chr6_2:27772572-27772591 | None:intergenic | 20.0% |
| !! | TAAAATTTAAAAGAAGAGCT+AGG | - | chr6_2:27772573-27772592 | None:intergenic | 20.0% |
| !! | AAACAACAATTCTGATTTAT+TGG | + | chr6_2:27772592-27772611 | Msa0914290:five_prime_UTR | 20.0% |
| !!! | AAAAGCTTTATTGAAAATGA+TGG | + | chr6_2:27772620-27772639 | Msa0914290:exon | 20.0% |
| !!! | TAAAATATGGTTACATTTTC+TGG | - | chr6_2:27772925-27772944 | None:intergenic | 20.0% |
| !!! | TTTGTGTTTTTCAGTTTATA+AGG | + | chr6_2:27772975-27772994 | Msa0914290:intron | 20.0% |
| !! | TTAAACTCATGATATAACAT+TGG | + | chr6_2:27773335-27773354 | Msa0914290:intron | 20.0% |
| !!! | GTTTTTTGCTAAAATTGTAT+TGG | + | chr6_2:27773369-27773388 | Msa0914290:intron | 20.0% |
| !! | TTATTGGATTTGTAACATAT+TGG | + | chr6_2:27773740-27773759 | Msa0914290:three_prime_UTR | 20.0% |
| !! | AAAATTTAAAAGAAGAGCTA+GGG | - | chr6_2:27772572-27772591 | None:intergenic | 20.0% |
| !! | TAAAATTTAAAAGAAGAGCT+AGG | - | chr6_2:27772573-27772592 | None:intergenic | 20.0% |
| !! | AAACAACAATTCTGATTTAT+TGG | + | chr6_2:27772592-27772611 | Msa0914290:five_prime_UTR | 20.0% |
| !!! | AAAAGCTTTATTGAAAATGA+TGG | + | chr6_2:27772620-27772639 | Msa0914290:exon | 20.0% |
| !!! | TAAAATATGGTTACATTTTC+TGG | - | chr6_2:27772925-27772944 | None:intergenic | 20.0% |
| !!! | TTTGTGTTTTTCAGTTTATA+AGG | + | chr6_2:27772975-27772994 | Msa0914290:intron | 20.0% |
| !! | TTAAACTCATGATATAACAT+TGG | + | chr6_2:27773335-27773354 | Msa0914290:intron | 20.0% |
| !!! | GTTTTTTGCTAAAATTGTAT+TGG | + | chr6_2:27773369-27773388 | Msa0914290:intron | 20.0% |
| !! | TTATTGGATTTGTAACATAT+TGG | + | chr6_2:27773740-27773759 | Msa0914290:three_prime_UTR | 20.0% |
| ! | TAAATGATGTTCAAATTGTG+AGG | - | chr6_2:27773023-27773042 | None:intergenic | 25.0% |
| !! | TGTATTGGTATAATATTTGC+AGG | + | chr6_2:27773384-27773403 | Msa0914290:intron | 25.0% |
| !! | GTATTGGTATAATATTTGCA+GGG | + | chr6_2:27773385-27773404 | Msa0914290:intron | 25.0% |
| ! | TATTGGTATAATATTTGCAG+GGG | + | chr6_2:27773386-27773405 | Msa0914290:intron | 25.0% |
| ! | GACAAGAAATTAACCTTAAT+TGG | + | chr6_2:27773435-27773454 | Msa0914290:CDS | 25.0% |
| ! | TACATGTAGTAAGTAAACTA+AGG | + | chr6_2:27773472-27773491 | Msa0914290:CDS | 25.0% |
| ! | TAGTAAGTAAACTAAGGAAA+TGG | + | chr6_2:27773478-27773497 | Msa0914290:CDS | 25.0% |
| ! | GAGGAATATTGAATATATTG+TGG | - | chr6_2:27773633-27773652 | None:intergenic | 25.0% |
| ! | TAAATGATGTTCAAATTGTG+AGG | - | chr6_2:27773023-27773042 | None:intergenic | 25.0% |
| !! | TGTATTGGTATAATATTTGC+AGG | + | chr6_2:27773384-27773403 | Msa0914290:intron | 25.0% |
| !! | GTATTGGTATAATATTTGCA+GGG | + | chr6_2:27773385-27773404 | Msa0914290:intron | 25.0% |
| ! | TATTGGTATAATATTTGCAG+GGG | + | chr6_2:27773386-27773405 | Msa0914290:intron | 25.0% |
| ! | GACAAGAAATTAACCTTAAT+TGG | + | chr6_2:27773435-27773454 | Msa0914290:CDS | 25.0% |
| ! | TACATGTAGTAAGTAAACTA+AGG | + | chr6_2:27773472-27773491 | Msa0914290:CDS | 25.0% |
| ! | TAGTAAGTAAACTAAGGAAA+TGG | + | chr6_2:27773478-27773497 | Msa0914290:CDS | 25.0% |
| ! | GAGGAATATTGAATATATTG+TGG | - | chr6_2:27773633-27773652 | None:intergenic | 25.0% |
| ! | GTTACAGAAACTAGTATTGA+AGG | + | chr6_2:27772733-27772752 | Msa0914290:intron | 30.0% |
| ACATATTGACATTACCTGAA+AGG | - | chr6_2:27772811-27772830 | None:intergenic | 30.0% | |
| TCAGGTAATGTCAATATGTA+CGG | + | chr6_2:27772812-27772831 | Msa0914290:intron | 30.0% | |
| !! | GTGTTTTTCAGTTTATAAGG+TGG | + | chr6_2:27772978-27772997 | Msa0914290:intron | 30.0% |
| AGTTTACTTACTACATGTAC+TGG | - | chr6_2:27773471-27773490 | None:intergenic | 30.0% | |
| ATGCTGAAATAGTTTCTGTT+GGG | + | chr6_2:27773505-27773524 | Msa0914290:CDS | 30.0% | |
| ! | TTCTTCTTTTCATCTTTTGC+AGG | - | chr6_2:27773531-27773550 | None:intergenic | 30.0% |
| ATTTGATTCTTCTTCACATC+AGG | - | chr6_2:27773567-27773586 | None:intergenic | 30.0% | |
| CATGTAGTAATAATGAGGAT+AGG | - | chr6_2:27773604-27773623 | None:intergenic | 30.0% | |
| TGTTGCATGTAGTAATAATG+AGG | - | chr6_2:27773609-27773628 | None:intergenic | 30.0% | |
| ATATTCCTCTGTTTCAAGAA+TGG | + | chr6_2:27773644-27773663 | Msa0914290:CDS | 30.0% | |
| ! | GTTACAGAAACTAGTATTGA+AGG | + | chr6_2:27772733-27772752 | Msa0914290:intron | 30.0% |
| ACATATTGACATTACCTGAA+AGG | - | chr6_2:27772811-27772830 | None:intergenic | 30.0% | |
| TCAGGTAATGTCAATATGTA+CGG | + | chr6_2:27772812-27772831 | Msa0914290:intron | 30.0% | |
| !! | GTGTTTTTCAGTTTATAAGG+TGG | + | chr6_2:27772978-27772997 | Msa0914290:intron | 30.0% |
| AGTTTACTTACTACATGTAC+TGG | - | chr6_2:27773471-27773490 | None:intergenic | 30.0% | |
| ATGCTGAAATAGTTTCTGTT+GGG | + | chr6_2:27773505-27773524 | Msa0914290:CDS | 30.0% | |
| ! | TTCTTCTTTTCATCTTTTGC+AGG | - | chr6_2:27773531-27773550 | None:intergenic | 30.0% |
| ATTTGATTCTTCTTCACATC+AGG | - | chr6_2:27773567-27773586 | None:intergenic | 30.0% | |
| CATGTAGTAATAATGAGGAT+AGG | - | chr6_2:27773604-27773623 | None:intergenic | 30.0% | |
| TGTTGCATGTAGTAATAATG+AGG | - | chr6_2:27773609-27773628 | None:intergenic | 30.0% | |
| ATATTCCTCTGTTTCAAGAA+TGG | + | chr6_2:27773644-27773663 | Msa0914290:CDS | 30.0% | |
| TAAAAGAAGAGCTAGGGTAT+TGG | - | chr6_2:27772566-27772585 | None:intergenic | 35.0% | |
| ! | ACAGAAACTAGTATTGAAGG+TGG | + | chr6_2:27772736-27772755 | Msa0914290:intron | 35.0% |
| ! | TGTCTTCATAGCTTTTTGCT+TGG | - | chr6_2:27772780-27772799 | None:intergenic | 35.0% |
| CATGCTGAAATAGTTTCTGT+TGG | + | chr6_2:27773504-27773523 | Msa0914290:CDS | 35.0% | |
| TTGTTCCATTCTTGAAACAG+AGG | - | chr6_2:27773652-27773671 | None:intergenic | 35.0% | |
| TAAAAGAAGAGCTAGGGTAT+TGG | - | chr6_2:27772566-27772585 | None:intergenic | 35.0% | |
| ! | ACAGAAACTAGTATTGAAGG+TGG | + | chr6_2:27772736-27772755 | Msa0914290:intron | 35.0% |
| ! | TGTCTTCATAGCTTTTTGCT+TGG | - | chr6_2:27772780-27772799 | None:intergenic | 35.0% |
| CATGCTGAAATAGTTTCTGT+TGG | + | chr6_2:27773504-27773523 | Msa0914290:CDS | 35.0% | |
| TTGTTCCATTCTTGAAACAG+AGG | - | chr6_2:27773652-27773671 | None:intergenic | 35.0% | |
| AAAGCTATGAAGACAGTCTC+TGG | + | chr6_2:27772785-27772804 | Msa0914290:CDS | 40.0% | |
| ACCGAGGTAGTAAAATGTTG+CGG | + | chr6_2:27773207-27773226 | Msa0914290:intron | 40.0% | |
| ! | TCCGCAACATTTTACTACCT+CGG | - | chr6_2:27773211-27773230 | None:intergenic | 40.0% |
| TGGATCTGTGTCTCCAATTA+AGG | - | chr6_2:27773451-27773470 | None:intergenic | 40.0% | |
| AGAATGGAACAAGATCCTGT+TGG | + | chr6_2:27773660-27773679 | Msa0914290:CDS | 40.0% | |
| AAAGCTATGAAGACAGTCTC+TGG | + | chr6_2:27772785-27772804 | Msa0914290:CDS | 40.0% | |
| ACCGAGGTAGTAAAATGTTG+CGG | + | chr6_2:27773207-27773226 | Msa0914290:intron | 40.0% | |
| ! | TCCGCAACATTTTACTACCT+CGG | - | chr6_2:27773211-27773230 | None:intergenic | 40.0% |
| TGGATCTGTGTCTCCAATTA+AGG | - | chr6_2:27773451-27773470 | None:intergenic | 40.0% | |
| AGAATGGAACAAGATCCTGT+TGG | + | chr6_2:27773660-27773679 | Msa0914290:CDS | 40.0% | |
| CAGCATATGACACATCCAAC+AGG | - | chr6_2:27773678-27773697 | None:intergenic | 45.0% | |
| CAGCATATGACACATCCAAC+AGG | - | chr6_2:27773678-27773697 | None:intergenic | 45.0% | |
| ! | AAGACAGTCTCTGGCCTTTC+AGG | + | chr6_2:27772794-27772813 | Msa0914290:CDS | 50.0% |
| AATCCGCGTAAGTGTAACCG+AGG | + | chr6_2:27773191-27773210 | Msa0914290:intron | 50.0% | |
| CTACCTCGGTTACACTTACG+CGG | - | chr6_2:27773197-27773216 | None:intergenic | 50.0% | |
| ! | AAGACAGTCTCTGGCCTTTC+AGG | + | chr6_2:27772794-27772813 | Msa0914290:CDS | 50.0% |
| AATCCGCGTAAGTGTAACCG+AGG | + | chr6_2:27773191-27773210 | Msa0914290:intron | 50.0% | |
| CTACCTCGGTTACACTTACG+CGG | - | chr6_2:27773197-27773216 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 27772507 | 27773874 | 27772507 | ID=Msa0914290;Name=Msa0914290 |
| chr6_2 | mRNA | 27772507 | 27773874 | 27772507 | ID=Msa0914290-mRNA-1;Parent=Msa0914290;Name=Msa0914290-mRNA-1;_AED=0.07;_eAED=0.07;_QI=129|1|1|1|1|1|3|176|124 |
| chr6_2 | exon | 27772507 | 27772641 | 27772507 | ID=Msa0914290-mRNA-1:exon:5135;Parent=Msa0914290-mRNA-1 |
| chr6_2 | exon | 27772740 | 27772815 | 27772740 | ID=Msa0914290-mRNA-1:exon:5136;Parent=Msa0914290-mRNA-1 |
| chr6_2 | exon | 27773406 | 27773874 | 27773406 | ID=Msa0914290-mRNA-1:exon:5137;Parent=Msa0914290-mRNA-1 |
| chr6_2 | five_prime_UTR | 27772507 | 27772635 | 27772507 | ID=Msa0914290-mRNA-1:five_prime_utr;Parent=Msa0914290-mRNA-1 |
| chr6_2 | CDS | 27772636 | 27772641 | 27772636 | ID=Msa0914290-mRNA-1:cds;Parent=Msa0914290-mRNA-1 |
| chr6_2 | CDS | 27772740 | 27772815 | 27772740 | ID=Msa0914290-mRNA-1:cds;Parent=Msa0914290-mRNA-1 |
| chr6_2 | CDS | 27773406 | 27773698 | 27773406 | ID=Msa0914290-mRNA-1:cds;Parent=Msa0914290-mRNA-1 |
| chr6_2 | three_prime_UTR | 27773699 | 27773874 | 27773699 | ID=Msa0914290-mRNA-1:three_prime_utr;Parent=Msa0914290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
