Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0952360 | XP_039690934.1 | 95.161 | 124 | 6 | 0 | 1 | 124 | 1 | 124 | 3.85e-70 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0952360 | sp|O03982|HIP39_ARATH | 67.606 | 71 | 22 | 1 | 1 | 70 | 1 | 71 | 1.18e-24 | 95.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0952360 | I3SS97 | 95.161 | 124 | 6 | 0 | 1 | 124 | 1 | 124 | 1.84e-70 | 216 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0085290 | Msa0952360 | 0.854641 | 1.075333e-61 | -8.615850e-47 |
| Msa0607180 | Msa0952360 | 0.815285 | 9.996298e-52 | -8.615850e-47 |
| Msa0647360 | Msa0952360 | 0.823586 | 1.278740e-53 | -8.615850e-47 |
| Msa0708300 | Msa0952360 | 0.802920 | 4.461802e-49 | -8.615850e-47 |
| Msa0825870 | Msa0952360 | 0.809821 | 1.565831e-50 | -8.615850e-47 |
| Msa0836850 | Msa0952360 | 0.800195 | 1.614970e-48 | -8.615850e-47 |
| Msa0131410 | Msa0952360 | 0.804460 | 2.137345e-49 | -8.615850e-47 |
| Msa0131420 | Msa0952360 | 0.840872 | 6.691782e-58 | -8.615850e-47 |
| Msa0202580 | Msa0952360 | 0.815924 | 7.203425e-52 | -8.615850e-47 |
| Msa0377800 | Msa0952360 | 0.818960 | 1.491863e-52 | -8.615850e-47 |
| Msa0269810 | Msa0952360 | 0.812838 | 3.465753e-51 | -8.615850e-47 |
| Msa0517570 | Msa0952360 | 0.817993 | 2.471611e-52 | -8.615850e-47 |
| Msa0574570 | Msa0952360 | 0.814687 | 1.356997e-51 | -8.615850e-47 |
| Msa0580920 | Msa0952360 | 0.809578 | 1.766034e-50 | -8.615850e-47 |
| Msa0599150 | Msa0952360 | 0.826059 | 3.338833e-54 | -8.615850e-47 |
| Msa0870060 | Msa0952360 | 0.805767 | 1.138843e-49 | -8.615850e-47 |
| Msa0887950 | Msa0952360 | 0.851647 | 7.743541e-61 | -8.615850e-47 |
| Msa0887960 | Msa0952360 | 0.867366 | 1.442586e-65 | -8.615850e-47 |
| Msa0888170 | Msa0952360 | 0.808772 | 2.627867e-50 | -8.615850e-47 |
| Msa0914260 | Msa0952360 | 0.885046 | 1.139405e-71 | -8.615850e-47 |
| Msa0914290 | Msa0952360 | 0.975406 | 6.793498e-140 | -8.615850e-47 |
| Msa0936530 | Msa0952360 | 0.816566 | 5.176323e-52 | -8.615850e-47 |
| Msa0952340 | Msa0952360 | 0.889382 | 2.546305e-73 | -8.615850e-47 |
| Msa0952360 | Msa0964130 | 0.826930 | 2.070072e-54 | -8.615850e-47 |
| Msa0952360 | Msa0973520 | 0.807537 | 4.815947e-50 | -8.615850e-47 |
| Msa0952360 | Msa1000160 | 0.801752 | 7.764923e-49 | -8.615850e-47 |
| Msa0952360 | Msa1177330 | 0.865568 | 5.373006e-65 | -8.615850e-47 |
| Msa0952360 | Msa1182130 | 0.812241 | 4.681202e-51 | -8.615850e-47 |
| Msa0952360 | Msa1201200 | 0.809875 | 1.524087e-50 | -8.615850e-47 |
| Msa0952360 | Msa1236730 | 0.889765 | 1.806508e-73 | -8.615850e-47 |
| Msa0952360 | Msa1246700 | 0.826672 | 2.385927e-54 | -8.615850e-47 |
| Msa0952360 | Msa1317130 | 0.874586 | 6.016859e-68 | -8.615850e-47 |
| Msa0952360 | Msa1344890 | 0.883048 | 6.237966e-71 | -8.615850e-47 |
| Msa0952360 | Msa1353880 | 0.805948 | 1.043076e-49 | -8.615850e-47 |
| Msa0952360 | Msa1365270 | 0.828132 | 1.065466e-54 | -8.615850e-47 |
| Msa0952360 | Msa1376450 | 0.825911 | 3.619957e-54 | -8.615850e-47 |
| Msa0952360 | Msa1391550 | 0.812007 | 5.264489e-51 | -8.615850e-47 |
| Msa0952360 | Msa1408180 | 0.812148 | 4.905832e-51 | -8.615850e-47 |
| Msa0952360 | Msa1448980 | 0.811399 | 7.137447e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0952360 | MtrunA17_Chr6g0469571 | 95.161 | 124 | 6 | 0 | 1 | 124 | 1 | 124 | 3.54e-74 | 216 |
| Msa0952360 | MtrunA17_Chr6g0469551 | 93.548 | 124 | 8 | 0 | 1 | 124 | 1 | 124 | 1.25e-73 | 214 |
| Msa0952360 | MtrunA17_Chr6g0469591 | 93.548 | 124 | 8 | 0 | 1 | 124 | 1 | 124 | 1.28e-72 | 212 |
| Msa0952360 | MtrunA17_Chr6g0469681 | 61.240 | 129 | 43 | 3 | 1 | 124 | 1 | 127 | 9.85e-39 | 126 |
| Msa0952360 | MtrunA17_Chr1g0202541 | 57.037 | 135 | 46 | 2 | 1 | 123 | 1 | 135 | 5.05e-37 | 122 |
| Msa0952360 | MtrunA17_Chr7g0233231 | 56.481 | 108 | 45 | 1 | 1 | 108 | 1 | 106 | 5.67e-37 | 121 |
| Msa0952360 | MtrunA17_Chr6g0469651 | 56.716 | 134 | 47 | 2 | 1 | 124 | 1 | 133 | 3.23e-36 | 120 |
| Msa0952360 | MtrunA17_Chr7g0233211 | 56.075 | 107 | 45 | 1 | 1 | 107 | 1 | 105 | 7.40e-36 | 119 |
| Msa0952360 | MtrunA17_Chr7g0233251 | 57.009 | 107 | 44 | 1 | 1 | 107 | 1 | 105 | 3.31e-35 | 117 |
| Msa0952360 | MtrunA17_Chr1g0202561 | 53.237 | 139 | 48 | 3 | 1 | 123 | 1 | 138 | 3.97e-35 | 118 |
| Msa0952360 | MtrunA17_Chr7g0233191 | 56.075 | 107 | 45 | 1 | 1 | 107 | 1 | 105 | 5.59e-35 | 116 |
| Msa0952360 | MtrunA17_Chr1g0202581 | 54.815 | 135 | 45 | 3 | 1 | 123 | 1 | 131 | 9.98e-35 | 116 |
| Msa0952360 | MtrunA17_Chr7g0233201 | 56.075 | 107 | 45 | 1 | 1 | 107 | 1 | 105 | 1.33e-34 | 115 |
| Msa0952360 | MtrunA17_Chr6g0469541 | 57.944 | 107 | 43 | 2 | 1 | 107 | 1 | 105 | 1.82e-34 | 115 |
| Msa0952360 | MtrunA17_Chr6g0469671 | 78.571 | 70 | 15 | 0 | 1 | 70 | 1 | 70 | 1.83e-34 | 115 |
| Msa0952360 | MtrunA17_Chr7g0233181 | 54.717 | 106 | 46 | 1 | 1 | 106 | 1 | 104 | 9.07e-34 | 113 |
| Msa0952360 | MtrunA17_Chr8g0387471 | 49.618 | 131 | 55 | 3 | 1 | 124 | 1 | 127 | 2.74e-33 | 112 |
| Msa0952360 | MtrunA17_Chr1g0202501 | 47.761 | 134 | 56 | 2 | 1 | 124 | 1 | 130 | 2.18e-31 | 108 |
| Msa0952360 | MtrunA17_Chr1g0204291 | 51.852 | 135 | 49 | 4 | 1 | 123 | 1 | 131 | 2.33e-31 | 108 |
| Msa0952360 | MtrunA17_Chr7g0248671 | 61.765 | 68 | 26 | 0 | 1 | 68 | 1 | 68 | 2.92e-24 | 91.3 |
| Msa0952360 | MtrunA17_Chr8g0348361 | 67.647 | 68 | 22 | 0 | 1 | 68 | 1 | 68 | 1.21e-15 | 68.6 |
| Msa0952360 | MtrunA17_Chr3g0120541 | 41.975 | 81 | 43 | 4 | 3 | 79 | 5 | 85 | 8.70e-13 | 60.5 |
| Msa0952360 | MtrunA17_Chr5g0404641 | 30.719 | 153 | 74 | 4 | 3 | 123 | 4 | 156 | 4.45e-11 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0952360 | AT1G01490.1 | 67.606 | 71 | 22 | 1 | 1 | 70 | 1 | 71 | 1.20e-25 | 95.5 |
| Msa0952360 | AT1G01490.2 | 67.606 | 71 | 22 | 1 | 1 | 70 | 1 | 71 | 1.20e-25 | 95.5 |
| Msa0952360 | AT1G01490.4 | 67.143 | 70 | 22 | 1 | 2 | 70 | 29 | 98 | 4.82e-25 | 94.4 |
| Msa0952360 | AT5G52740.1 | 55.714 | 70 | 29 | 1 | 1 | 70 | 1 | 68 | 6.52e-18 | 73.9 |
| Msa0952360 | AT5G52760.1 | 43.269 | 104 | 49 | 4 | 5 | 105 | 7 | 103 | 1.34e-16 | 70.9 |
| Msa0952360 | AT5G52750.1 | 45.455 | 66 | 36 | 0 | 2 | 67 | 4 | 69 | 2.74e-13 | 62.4 |
| Msa0952360 | AT5G23760.1 | 52.174 | 69 | 32 | 1 | 3 | 70 | 4 | 72 | 2.86e-11 | 56.6 |
| Msa0952360 | AT1G63960.2 | 35.714 | 70 | 44 | 1 | 1 | 69 | 11 | 80 | 6.41e-11 | 56.6 |
| Msa0952360 | AT1G63950.2 | 30.400 | 125 | 77 | 3 | 1 | 124 | 1 | 116 | 6.78e-11 | 55.8 |
Find 27 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACAACAATTCTGATTTAT+TGG | 0.145112 | 6_3:+46605281 | Msa0952360:five_prime_UTR |
| AAGACAGTCTCTGGCCTTTC+AGG | 0.146342 | 6_3:+46605483 | Msa0952360:CDS |
| GACAAGAAATTAACCTTAAT+TGG | 0.151973 | 6_3:+46606126 | Msa0952360:CDS |
| TTATATTTCATATGATTTAT+TGG | 0.157338 | 6_3:+46606415 | Msa0952360:three_prime_UTR |
| TGGATCTGTGTCTCCAATTA+AGG | 0.276564 | 6_3:-46606139 | None:intergenic |
| ATTTGATTCTTCTTCACATC+AGG | 0.383077 | 6_3:-46606255 | None:intergenic |
| TAAAAGAAGAGCTAGGGTAT+TGG | 0.399065 | 6_3:-46605252 | None:intergenic |
| ATATTCCTGTGTTTCAAGAA+TGG | 0.407778 | 6_3:+46606335 | Msa0952360:CDS |
| TAAAATTTAAAAGAAGAGCT+AGG | 0.408169 | 6_3:-46605259 | None:intergenic |
| AGTTTACTTACTACATGTAC+TGG | 0.438622 | 6_3:-46606159 | None:intergenic |
| AAAAGCTTTATTGAAAATGA+TGG | 0.441720 | 6_3:+46605309 | Msa0952360:exon |
| GTTACAGAAACTAGTATTGA+AGG | 0.451235 | 6_3:+46605422 | Msa0952360:intron |
| TAGTAAGTAAACTAAGGAAA+TGG | 0.475788 | 6_3:+46606169 | Msa0952360:CDS |
| ATGCTGAAATAGTTTCTGTT+GGG | 0.476513 | 6_3:+46606196 | Msa0952360:CDS |
| AAAGCTATGAAGACAGTCTC+TGG | 0.487579 | 6_3:+46605474 | Msa0952360:CDS |
| AAAATTTAAAAGAAGAGCTA+GGG | 0.497403 | 6_3:-46605258 | None:intergenic |
| CATGCTGAAATAGTTTCTGT+TGG | 0.500770 | 6_3:+46606195 | Msa0952360:CDS |
| TACATGTAGTAAGTAAACTA+AGG | 0.515410 | 6_3:+46606163 | Msa0952360:CDS |
| CAGCATATGACACATCCAAC+AGG | 0.518380 | 6_3:-46606366 | None:intergenic |
| TTGTTCCATTCTTGAAACAC+AGG | 0.547137 | 6_3:-46606340 | None:intergenic |
| CAGGAATATTGAATATATTG+TGG | 0.566124 | 6_3:-46606321 | None:intergenic |
| TTATTGGATTTGCAACATGT+TGG | 0.572098 | 6_3:+46606431 | Msa0952360:three_prime_UTR |
| CATGTAGTAATAATGAGGAT+AGG | 0.591628 | 6_3:-46606292 | None:intergenic |
| ACATATTGACATTACCTGAA+AGG | 0.607504 | 6_3:-46605497 | None:intergenic |
| AGAATGGAACAAGATCCTGT+TGG | 0.628668 | 6_3:+46606351 | Msa0952360:CDS |
| TGTTGCATGTAGTAATAATG+AGG | 0.650568 | 6_3:-46606297 | None:intergenic |
| ACAGAAACTAGTATTGAAGG+TGG | 0.658613 | 6_3:+46605425 | Msa0952360:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGTTAAAAAATTGAAAAA+TGG | - | chr6_3:46605761-46605780 | None:intergenic | 10.0% |
| !! | TAATAATATATTTATCTACA+CGG | + | chr6_3:46605955-46605974 | Msa0952360:intron | 10.0% |
| !! | TTATATTTCATATGATTTAT+TGG | + | chr6_3:46606415-46606434 | Msa0952360:three_prime_UTR | 10.0% |
| !! | TTTGTTAAAAAATTGAAAAA+TGG | - | chr6_3:46605761-46605780 | None:intergenic | 10.0% |
| !! | TAATAATATATTTATCTACA+CGG | + | chr6_3:46605955-46605974 | Msa0952360:intron | 10.0% |
| !! | TTATATTTCATATGATTTAT+TGG | + | chr6_3:46606415-46606434 | Msa0952360:three_prime_UTR | 10.0% |
| !! | AATAATGCATGATTAAAATA+TGG | - | chr6_3:46605627-46605646 | None:intergenic | 15.0% |
| !!! | AATTTTAGCAAAAAACTTAA+AGG | - | chr6_3:46606056-46606075 | None:intergenic | 15.0% |
| !! | AATAATGCATGATTAAAATA+TGG | - | chr6_3:46605627-46605646 | None:intergenic | 15.0% |
| !!! | AATTTTAGCAAAAAACTTAA+AGG | - | chr6_3:46606056-46606075 | None:intergenic | 15.0% |
| !! | AAAATTTAAAAGAAGAGCTA+GGG | - | chr6_3:46605261-46605280 | None:intergenic | 20.0% |
| !! | TAAAATTTAAAAGAAGAGCT+AGG | - | chr6_3:46605262-46605281 | None:intergenic | 20.0% |
| !! | AAACAACAATTCTGATTTAT+TGG | + | chr6_3:46605281-46605300 | Msa0952360:five_prime_UTR | 20.0% |
| !!! | AAAAGCTTTATTGAAAATGA+TGG | + | chr6_3:46605309-46605328 | Msa0952360:exon | 20.0% |
| !!! | TAAAATATGGTTACATTTTC+TGG | - | chr6_3:46605614-46605633 | None:intergenic | 20.0% |
| !!! | TTTGTGTTTTTCAGTTTATA+AGG | + | chr6_3:46605664-46605683 | Msa0952360:intron | 20.0% |
| !! | TTAAACTCATGATATAACAT+TGG | + | chr6_3:46606026-46606045 | Msa0952360:intron | 20.0% |
| !!! | GTTTTTTGCTAAAATTGTAT+TGG | + | chr6_3:46606060-46606079 | Msa0952360:intron | 20.0% |
| !! | AACATGTTGGAAAAAATAAA+AGG | + | chr6_3:46606444-46606463 | Msa0952360:three_prime_UTR | 20.0% |
| !! | AAAATTTAAAAGAAGAGCTA+GGG | - | chr6_3:46605261-46605280 | None:intergenic | 20.0% |
| !! | TAAAATTTAAAAGAAGAGCT+AGG | - | chr6_3:46605262-46605281 | None:intergenic | 20.0% |
| !! | AAACAACAATTCTGATTTAT+TGG | + | chr6_3:46605281-46605300 | Msa0952360:five_prime_UTR | 20.0% |
| !!! | AAAAGCTTTATTGAAAATGA+TGG | + | chr6_3:46605309-46605328 | Msa0952360:exon | 20.0% |
| !!! | TAAAATATGGTTACATTTTC+TGG | - | chr6_3:46605614-46605633 | None:intergenic | 20.0% |
| !!! | TTTGTGTTTTTCAGTTTATA+AGG | + | chr6_3:46605664-46605683 | Msa0952360:intron | 20.0% |
| !! | TTAAACTCATGATATAACAT+TGG | + | chr6_3:46606026-46606045 | Msa0952360:intron | 20.0% |
| !!! | GTTTTTTGCTAAAATTGTAT+TGG | + | chr6_3:46606060-46606079 | Msa0952360:intron | 20.0% |
| !! | AACATGTTGGAAAAAATAAA+AGG | + | chr6_3:46606444-46606463 | Msa0952360:three_prime_UTR | 20.0% |
| ! | TAAATGATGTTCAAATTGTG+AGG | - | chr6_3:46605712-46605731 | None:intergenic | 25.0% |
| !! | TGTATTGGTATAATATTTGC+AGG | + | chr6_3:46606075-46606094 | Msa0952360:intron | 25.0% |
| !! | GTATTGGTATAATATTTGCA+GGG | + | chr6_3:46606076-46606095 | Msa0952360:intron | 25.0% |
| ! | TATTGGTATAATATTTGCAG+GGG | + | chr6_3:46606077-46606096 | Msa0952360:intron | 25.0% |
| ! | GACAAGAAATTAACCTTAAT+TGG | + | chr6_3:46606126-46606145 | Msa0952360:CDS | 25.0% |
| ! | TACATGTAGTAAGTAAACTA+AGG | + | chr6_3:46606163-46606182 | Msa0952360:CDS | 25.0% |
| ! | TAGTAAGTAAACTAAGGAAA+TGG | + | chr6_3:46606169-46606188 | Msa0952360:CDS | 25.0% |
| ! | CAGGAATATTGAATATATTG+TGG | - | chr6_3:46606324-46606343 | None:intergenic | 25.0% |
| ! | TAAATGATGTTCAAATTGTG+AGG | - | chr6_3:46605712-46605731 | None:intergenic | 25.0% |
| !! | TGTATTGGTATAATATTTGC+AGG | + | chr6_3:46606075-46606094 | Msa0952360:intron | 25.0% |
| !! | GTATTGGTATAATATTTGCA+GGG | + | chr6_3:46606076-46606095 | Msa0952360:intron | 25.0% |
| ! | TATTGGTATAATATTTGCAG+GGG | + | chr6_3:46606077-46606096 | Msa0952360:intron | 25.0% |
| ! | GACAAGAAATTAACCTTAAT+TGG | + | chr6_3:46606126-46606145 | Msa0952360:CDS | 25.0% |
| ! | TACATGTAGTAAGTAAACTA+AGG | + | chr6_3:46606163-46606182 | Msa0952360:CDS | 25.0% |
| ! | TAGTAAGTAAACTAAGGAAA+TGG | + | chr6_3:46606169-46606188 | Msa0952360:CDS | 25.0% |
| ! | CAGGAATATTGAATATATTG+TGG | - | chr6_3:46606324-46606343 | None:intergenic | 25.0% |
| ! | GTTACAGAAACTAGTATTGA+AGG | + | chr6_3:46605422-46605441 | Msa0952360:intron | 30.0% |
| ACATATTGACATTACCTGAA+AGG | - | chr6_3:46605500-46605519 | None:intergenic | 30.0% | |
| TCAGGTAATGTCAATATGTA+CGG | + | chr6_3:46605501-46605520 | Msa0952360:intron | 30.0% | |
| !! | GTGTTTTTCAGTTTATAAGG+TGG | + | chr6_3:46605667-46605686 | Msa0952360:intron | 30.0% |
| AGTTTACTTACTACATGTAC+TGG | - | chr6_3:46606162-46606181 | None:intergenic | 30.0% | |
| ATGCTGAAATAGTTTCTGTT+GGG | + | chr6_3:46606196-46606215 | Msa0952360:CDS | 30.0% | |
| ! | TTCTTCTTTTCATCTTTTGC+AGG | - | chr6_3:46606222-46606241 | None:intergenic | 30.0% |
| ATTTGATTCTTCTTCACATC+AGG | - | chr6_3:46606258-46606277 | None:intergenic | 30.0% | |
| CATGTAGTAATAATGAGGAT+AGG | - | chr6_3:46606295-46606314 | None:intergenic | 30.0% | |
| TGTTGCATGTAGTAATAATG+AGG | - | chr6_3:46606300-46606319 | None:intergenic | 30.0% | |
| ATATTCCTGTGTTTCAAGAA+TGG | + | chr6_3:46606335-46606354 | Msa0952360:CDS | 30.0% | |
| TTATTGGATTTGCAACATGT+TGG | + | chr6_3:46606431-46606450 | Msa0952360:three_prime_UTR | 30.0% | |
| ! | GTTACAGAAACTAGTATTGA+AGG | + | chr6_3:46605422-46605441 | Msa0952360:intron | 30.0% |
| ACATATTGACATTACCTGAA+AGG | - | chr6_3:46605500-46605519 | None:intergenic | 30.0% | |
| TCAGGTAATGTCAATATGTA+CGG | + | chr6_3:46605501-46605520 | Msa0952360:intron | 30.0% | |
| !! | GTGTTTTTCAGTTTATAAGG+TGG | + | chr6_3:46605667-46605686 | Msa0952360:intron | 30.0% |
| AGTTTACTTACTACATGTAC+TGG | - | chr6_3:46606162-46606181 | None:intergenic | 30.0% | |
| ATGCTGAAATAGTTTCTGTT+GGG | + | chr6_3:46606196-46606215 | Msa0952360:CDS | 30.0% | |
| ! | TTCTTCTTTTCATCTTTTGC+AGG | - | chr6_3:46606222-46606241 | None:intergenic | 30.0% |
| ATTTGATTCTTCTTCACATC+AGG | - | chr6_3:46606258-46606277 | None:intergenic | 30.0% | |
| CATGTAGTAATAATGAGGAT+AGG | - | chr6_3:46606295-46606314 | None:intergenic | 30.0% | |
| TGTTGCATGTAGTAATAATG+AGG | - | chr6_3:46606300-46606319 | None:intergenic | 30.0% | |
| ATATTCCTGTGTTTCAAGAA+TGG | + | chr6_3:46606335-46606354 | Msa0952360:CDS | 30.0% | |
| TTATTGGATTTGCAACATGT+TGG | + | chr6_3:46606431-46606450 | Msa0952360:three_prime_UTR | 30.0% | |
| TAAAAGAAGAGCTAGGGTAT+TGG | - | chr6_3:46605255-46605274 | None:intergenic | 35.0% | |
| ! | ACAGAAACTAGTATTGAAGG+TGG | + | chr6_3:46605425-46605444 | Msa0952360:intron | 35.0% |
| ! | TGTCTTCATAGCTTTTTGCT+TGG | - | chr6_3:46605469-46605488 | None:intergenic | 35.0% |
| !!! | CGCAACATTTTTTACTACCT+CGG | - | chr6_3:46605900-46605919 | None:intergenic | 35.0% |
| CGAGGTAGTAAAAAATGTTG+CGG | + | chr6_3:46605898-46605917 | Msa0952360:intron | 35.0% | |
| CATGCTGAAATAGTTTCTGT+TGG | + | chr6_3:46606195-46606214 | Msa0952360:CDS | 35.0% | |
| TTGTTCCATTCTTGAAACAC+AGG | - | chr6_3:46606343-46606362 | None:intergenic | 35.0% | |
| TAAAAGAAGAGCTAGGGTAT+TGG | - | chr6_3:46605255-46605274 | None:intergenic | 35.0% | |
| ! | ACAGAAACTAGTATTGAAGG+TGG | + | chr6_3:46605425-46605444 | Msa0952360:intron | 35.0% |
| ! | TGTCTTCATAGCTTTTTGCT+TGG | - | chr6_3:46605469-46605488 | None:intergenic | 35.0% |
| !!! | CGCAACATTTTTTACTACCT+CGG | - | chr6_3:46605900-46605919 | None:intergenic | 35.0% |
| CGAGGTAGTAAAAAATGTTG+CGG | + | chr6_3:46605898-46605917 | Msa0952360:intron | 35.0% | |
| CATGCTGAAATAGTTTCTGT+TGG | + | chr6_3:46606195-46606214 | Msa0952360:CDS | 35.0% | |
| TTGTTCCATTCTTGAAACAC+AGG | - | chr6_3:46606343-46606362 | None:intergenic | 35.0% | |
| AAAGCTATGAAGACAGTCTC+TGG | + | chr6_3:46605474-46605493 | Msa0952360:CDS | 40.0% | |
| TGGATCTGTGTCTCCAATTA+AGG | - | chr6_3:46606142-46606161 | None:intergenic | 40.0% | |
| AGAATGGAACAAGATCCTGT+TGG | + | chr6_3:46606351-46606370 | Msa0952360:CDS | 40.0% | |
| AAAGCTATGAAGACAGTCTC+TGG | + | chr6_3:46605474-46605493 | Msa0952360:CDS | 40.0% | |
| TGGATCTGTGTCTCCAATTA+AGG | - | chr6_3:46606142-46606161 | None:intergenic | 40.0% | |
| AGAATGGAACAAGATCCTGT+TGG | + | chr6_3:46606351-46606370 | Msa0952360:CDS | 40.0% | |
| CAGCATATGACACATCCAAC+AGG | - | chr6_3:46606369-46606388 | None:intergenic | 45.0% | |
| CAGCATATGACACATCCAAC+AGG | - | chr6_3:46606369-46606388 | None:intergenic | 45.0% | |
| ! | AAGACAGTCTCTGGCCTTTC+AGG | + | chr6_3:46605483-46605502 | Msa0952360:CDS | 50.0% |
| AATCCGCGTAAGTGTAACCG+AGG | + | chr6_3:46605880-46605899 | Msa0952360:intron | 50.0% | |
| CTACCTCGGTTACACTTACG+CGG | - | chr6_3:46605886-46605905 | None:intergenic | 50.0% | |
| ! | AAGACAGTCTCTGGCCTTTC+AGG | + | chr6_3:46605483-46605502 | Msa0952360:CDS | 50.0% |
| AATCCGCGTAAGTGTAACCG+AGG | + | chr6_3:46605880-46605899 | Msa0952360:intron | 50.0% | |
| CTACCTCGGTTACACTTACG+CGG | - | chr6_3:46605886-46605905 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 46605196 | 46606565 | 46605196 | ID=Msa0952360;Name=Msa0952360 |
| chr6_3 | mRNA | 46605196 | 46606565 | 46605196 | ID=Msa0952360-mRNA-1;Parent=Msa0952360;Name=Msa0952360-mRNA-1;_AED=0.07;_eAED=0.07;_QI=129|1|1|1|1|1|3|176|124 |
| chr6_3 | exon | 46605196 | 46605330 | 46605196 | ID=Msa0952360-mRNA-1:exon:10295;Parent=Msa0952360-mRNA-1 |
| chr6_3 | exon | 46605429 | 46605504 | 46605429 | ID=Msa0952360-mRNA-1:exon:10296;Parent=Msa0952360-mRNA-1 |
| chr6_3 | exon | 46606097 | 46606565 | 46606097 | ID=Msa0952360-mRNA-1:exon:10297;Parent=Msa0952360-mRNA-1 |
| chr6_3 | five_prime_UTR | 46605196 | 46605324 | 46605196 | ID=Msa0952360-mRNA-1:five_prime_utr;Parent=Msa0952360-mRNA-1 |
| chr6_3 | CDS | 46605325 | 46605330 | 46605325 | ID=Msa0952360-mRNA-1:cds;Parent=Msa0952360-mRNA-1 |
| chr6_3 | CDS | 46605429 | 46605504 | 46605429 | ID=Msa0952360-mRNA-1:cds;Parent=Msa0952360-mRNA-1 |
| chr6_3 | CDS | 46606097 | 46606389 | 46606097 | ID=Msa0952360-mRNA-1:cds;Parent=Msa0952360-mRNA-1 |
| chr6_3 | three_prime_UTR | 46606390 | 46606565 | 46606390 | ID=Msa0952360-mRNA-1:three_prime_utr;Parent=Msa0952360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
