Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888800 | XP_013452366.1 | 80.471 | 297 | 10 | 2 | 1 | 249 | 1 | 297 | 1.04e-155 | 444 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888800 | sp|Q8GXT7|P4H12_ARATH | 37.584 | 298 | 130 | 9 | 1 | 249 | 1 | 291 | 7.00e-51 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888800 | A0A072U9B5 | 80.471 | 297 | 10 | 2 | 1 | 249 | 1 | 297 | 4.94e-156 | 444 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0888800 | Msa0915530 | 0.860292 | 2.285899e-63 | -8.615850e-47 |
| Msa0888800 | Msa1338200 | 0.876647 | 1.182168e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888800 | MtrunA17_Chr6g0470551 | 80.471 | 297 | 10 | 2 | 1 | 249 | 1 | 297 | 9.52e-160 | 444 |
| Msa0888800 | MtrunA17_Chr4g0066531 | 40.865 | 208 | 80 | 4 | 76 | 249 | 100 | 298 | 3.33e-44 | 150 |
| Msa0888800 | MtrunA17_Chr6g0452281 | 35.714 | 238 | 119 | 5 | 38 | 249 | 82 | 311 | 1.10e-43 | 149 |
| Msa0888800 | MtrunA17_Chr2g0286811 | 35.391 | 243 | 116 | 5 | 38 | 249 | 71 | 303 | 4.87e-40 | 140 |
| Msa0888800 | MtrunA17_Chr3g0143381 | 32.867 | 143 | 69 | 3 | 76 | 191 | 132 | 274 | 5.93e-17 | 78.2 |
| Msa0888800 | MtrunA17_Chr8g0371281 | 29.255 | 188 | 102 | 5 | 33 | 192 | 88 | 272 | 2.43e-16 | 76.3 |
| Msa0888800 | MtrunA17_Chr8g0371241 | 32.540 | 126 | 74 | 4 | 76 | 190 | 31 | 156 | 9.42e-16 | 72.8 |
| Msa0888800 | MtrunA17_Chr8g0371251 | 28.796 | 191 | 99 | 5 | 33 | 192 | 90 | 274 | 1.26e-15 | 74.3 |
| Msa0888800 | MtrunA17_Chr5g0406051 | 30.282 | 142 | 72 | 3 | 76 | 190 | 141 | 282 | 3.08e-15 | 73.6 |
| Msa0888800 | MtrunA17_Chr3g0143361 | 30.216 | 139 | 76 | 2 | 76 | 193 | 32 | 170 | 4.36e-15 | 71.6 |
| Msa0888800 | MtrunA17_Chr1g0213811 | 33.824 | 136 | 65 | 4 | 78 | 190 | 142 | 275 | 5.99e-15 | 72.8 |
| Msa0888800 | MtrunA17_Chr8g0371221 | 31.690 | 142 | 70 | 3 | 76 | 190 | 130 | 271 | 1.56e-14 | 71.2 |
| Msa0888800 | MtrunA17_Chr8g0371231 | 28.169 | 142 | 75 | 3 | 76 | 190 | 55 | 196 | 1.07e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888800 | AT4G25600.1 | 37.584 | 298 | 130 | 9 | 1 | 249 | 1 | 291 | 7.12e-52 | 171 |
| Msa0888800 | AT4G25600.3 | 42.512 | 207 | 87 | 4 | 68 | 249 | 31 | 230 | 1.32e-50 | 165 |
| Msa0888800 | AT4G25600.4 | 42.512 | 207 | 87 | 4 | 68 | 249 | 28 | 227 | 1.36e-50 | 165 |
| Msa0888800 | AT4G25600.2 | 42.512 | 207 | 87 | 4 | 68 | 249 | 40 | 239 | 1.52e-50 | 166 |
| Msa0888800 | AT3G28490.1 | 39.500 | 200 | 88 | 3 | 76 | 249 | 96 | 288 | 5.88e-46 | 155 |
| Msa0888800 | AT3G28480.1 | 37.500 | 200 | 95 | 3 | 76 | 249 | 119 | 314 | 1.39e-43 | 150 |
| Msa0888800 | AT3G28480.2 | 37.500 | 200 | 95 | 3 | 76 | 249 | 127 | 322 | 2.13e-43 | 149 |
| Msa0888800 | AT3G06300.1 | 38.916 | 203 | 91 | 4 | 76 | 249 | 101 | 299 | 9.19e-42 | 144 |
| Msa0888800 | AT5G18900.1 | 34.167 | 240 | 119 | 5 | 39 | 249 | 69 | 298 | 8.22e-38 | 134 |
| Msa0888800 | AT4G35810.1 | 32.414 | 145 | 71 | 3 | 76 | 193 | 143 | 287 | 2.84e-16 | 77.0 |
| Msa0888800 | AT4G35810.2 | 32.414 | 145 | 71 | 3 | 76 | 193 | 143 | 287 | 2.84e-16 | 77.0 |
| Msa0888800 | AT2G17720.1 | 31.724 | 145 | 72 | 3 | 76 | 193 | 143 | 287 | 8.07e-16 | 75.5 |
| Msa0888800 | AT1G20270.1 | 29.861 | 144 | 74 | 3 | 76 | 192 | 139 | 282 | 3.84e-15 | 73.6 |
| Msa0888800 | AT5G66060.1 | 29.577 | 142 | 73 | 3 | 76 | 190 | 141 | 282 | 1.44e-13 | 69.3 |
| Msa0888800 | AT2G43080.1 | 28.571 | 140 | 79 | 3 | 78 | 196 | 144 | 283 | 2.95e-12 | 65.5 |
Find 63 sgRNAs with CRISPR-Local
Find 392 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGACCACATATCGCCTTTA+AGG | 0.151018 | 6_1:-54175963 | None:intergenic |
| CCTTTACAGGTCATGCATTA+TGG | 0.184280 | 6_1:+54175286 | Msa0888800:CDS |
| TTTCACAAACAAAACCAAAT+TGG | 0.191233 | 6_1:+54175339 | Msa0888800:CDS |
| GCTCGATGCCCTGTCCTTAA+AGG | 0.210672 | 6_1:+54175949 | Msa0888800:CDS |
| TCTTGTCAGGAGATGTATTT+AGG | 0.219035 | 6_1:-54175915 | None:intergenic |
| AGAGAACAGCAAGCCTTTAC+AGG | 0.299865 | 6_1:+54175273 | Msa0888800:intron |
| CTTTACAGGTCATGCATTAT+GGG | 0.305434 | 6_1:+54175287 | Msa0888800:CDS |
| AGAACTGCATTCCCTTTAAC+TGG | 0.334718 | 6_1:-54175877 | None:intergenic |
| AGAGGAAACTTCATTGGATA+TGG | 0.342638 | 6_1:+54173508 | Msa0888800:CDS |
| TTAACAGCAGGAAAGAATTA+AGG | 0.349909 | 6_1:+54170981 | Msa0888800:intron |
| TTCACAAACAAAACCAAATT+GGG | 0.356049 | 6_1:+54175340 | Msa0888800:CDS |
| AGGTCCGGTTGATCCCAATT+TGG | 0.361801 | 6_1:-54175353 | None:intergenic |
| AAAGAAAGAGGAAACTTCAT+TGG | 0.368859 | 6_1:+54173502 | Msa0888800:CDS |
| GAGGTTCTCCAACCAGTTAA+AGG | 0.393818 | 6_1:+54175865 | Msa0888800:CDS |
| TTGAAGAAAGACTTTCGGTT+TGG | 0.401961 | 6_1:+54175143 | Msa0888800:CDS |
| AAAACCAAATTGGGATCAAC+CGG | 0.420089 | 6_1:+54175349 | Msa0888800:CDS |
| GTTGGATCTCCTGATTACTA+TGG | 0.429222 | 6_1:+54176126 | Msa0888800:CDS |
| CGACAAGTACCATAGTAATC+AGG | 0.442588 | 6_1:-54176135 | None:intergenic |
| TAGAAGCGAGAGGGTGAAGA+AGG | 0.445042 | 6_1:-54170857 | None:intergenic |
| GAGGATTGAAGAAAGACTTT+CGG | 0.449118 | 6_1:+54175138 | Msa0888800:CDS |
| GAAGAAGGTGATGAGGATAA+AGG | 0.452413 | 6_1:-54170842 | None:intergenic |
| GTGAATTAACTGATATTCTC+AGG | 0.462191 | 6_1:+54176257 | Msa0888800:three_prime_UTR |
| TCTCCCGTTGCTGCCCAAGC+TGG | 0.465114 | 6_1:-54176078 | None:intergenic |
| CTGCATTCCCTTTAACTGGT+TGG | 0.472708 | 6_1:-54175873 | None:intergenic |
| AAGAAGGTGTTAGAAGCGAG+AGG | 0.473143 | 6_1:-54170867 | None:intergenic |
| AGATGATAGTTGTCCAGCTT+GGG | 0.474954 | 6_1:+54176065 | Msa0888800:CDS |
| CACTGTTGCCATCAAAGGTC+CGG | 0.475147 | 6_1:-54175368 | None:intergenic |
| TGTCCAGCTTGGGCAGCAAC+GGG | 0.476542 | 6_1:+54176075 | Msa0888800:CDS |
| GCGTGTAAGCTACTCTTGTC+AGG | 0.476850 | 6_1:-54175928 | None:intergenic |
| AGGTTCTCCAACCAGTTAAA+GGG | 0.477047 | 6_1:+54175866 | Msa0888800:CDS |
| CCATAATGCATGACCTGTAA+AGG | 0.487176 | 6_1:-54175286 | None:intergenic |
| AAGATGATAGTTGTCCAGCT+TGG | 0.488359 | 6_1:+54176064 | Msa0888800:CDS |
| CGGAACCCTGTCTACATGGT+TGG | 0.491604 | 6_1:+54176108 | Msa0888800:CDS |
| ATTTGACCAGCTGCTACTCT+TGG | 0.492285 | 6_1:-54175827 | None:intergenic |
| GGAGATCCAACCATGTAGAC+AGG | 0.498626 | 6_1:-54176114 | None:intergenic |
| TAACACCTTCTTTCTCCGAC+AGG | 0.514033 | 6_1:+54170878 | Msa0888800:CDS |
| AGAGGGTGAAGAAGGTGATG+AGG | 0.514844 | 6_1:-54170849 | None:intergenic |
| TTGTCCAGCTTGGGCAGCAA+CGG | 0.515020 | 6_1:+54176074 | Msa0888800:CDS |
| CACATATCGCCTTTAAGGAC+AGG | 0.515314 | 6_1:-54175958 | None:intergenic |
| AATTACCTGTCGGAGAAAGA+AGG | 0.515809 | 6_1:-54170883 | None:intergenic |
| ATATATTGCCTAGTTAATTG+AGG | 0.520821 | 6_1:-54176304 | None:intergenic |
| ATTCTGAGCTGCATATCAAA+AGG | 0.526949 | 6_1:+54176395 | Msa0888800:three_prime_UTR |
| CTGATTACTATGGTACTTGT+CGG | 0.527249 | 6_1:+54176136 | Msa0888800:CDS |
| TCAACGGAACCCTGTCTACA+TGG | 0.530423 | 6_1:+54176104 | Msa0888800:CDS |
| TGGTGGCTATTCAAAGAAAG+AGG | 0.553698 | 6_1:+54173490 | Msa0888800:CDS |
| AGAATCACTGTTGCCATCAA+AGG | 0.553753 | 6_1:-54175373 | None:intergenic |
| AGAAGGTGTTAGAAGCGAGA+GGG | 0.558813 | 6_1:-54170866 | None:intergenic |
| AATGCATGCTGATGAGAAGT+TGG | 0.573489 | 6_1:+54176168 | Msa0888800:exon |
| ATGATGTTCCTCAATTAACT+AGG | 0.580542 | 6_1:+54176296 | Msa0888800:three_prime_UTR |
| CACAGACCAAGAGTAGCAGC+TGG | 0.591686 | 6_1:+54175821 | Msa0888800:intron |
| TGTACATTTCTCAAAAGCAA+AGG | 0.603530 | 6_1:-54176333 | None:intergenic |
| CTGTCCTTAAAGGCGATATG+TGG | 0.609635 | 6_1:+54175959 | Msa0888800:CDS |
| TATACAAGATCGATCAGTGG+AGG | 0.618199 | 6_1:+54176000 | Msa0888800:CDS |
| GAGATTTGGACAACACGTGA+AGG | 0.623698 | 6_1:-54171067 | None:intergenic |
| AGGGAAAGTCTCAACTACGC+TGG | 0.624281 | 6_1:+54176020 | Msa0888800:CDS |
| TTTAGGATGATATTGTCAAG+AGG | 0.632824 | 6_1:+54175119 | Msa0888800:intron |
| ATACAAGATCGATCAGTGGA+GGG | 0.641541 | 6_1:+54176001 | Msa0888800:CDS |
| CAGCAACGGGAGAATGTCAA+CGG | 0.647505 | 6_1:+54176088 | Msa0888800:CDS |
| TTCTATACAAGATCGATCAG+TGG | 0.652183 | 6_1:+54175997 | Msa0888800:CDS |
| GAGATCCAACCATGTAGACA+GGG | 0.668526 | 6_1:-54176113 | None:intergenic |
| ACATATCGCCTTTAAGGACA+GGG | 0.680203 | 6_1:-54175957 | None:intergenic |
| TTGAAGAAGAAGAATCACGG+TGG | 0.754864 | 6_1:-54170800 | None:intergenic |
| AAATTGTAGAAATAACAGTG+AGG | 0.789611 | 6_1:+54175846 | Msa0888800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTATATATATTTTTTAAACT+CGG | + | chr6_1:54171150-54171169 | Msa0888800:intron | 10.0% |
| !! | ATTATTATTATTATTATGAG+CGG | + | chr6_1:54171267-54171286 | Msa0888800:intron | 10.0% |
| !!! | TTTTAAATTTGAGAAAATAT+TGG | + | chr6_1:54171401-54171420 | Msa0888800:intron | 10.0% |
| !! | TTTAATTATATTATAAGTAG+AGG | + | chr6_1:54173241-54173260 | Msa0888800:intron | 10.0% |
| !! | TTAATTATATTATAAGTAGA+GGG | + | chr6_1:54173242-54173261 | Msa0888800:intron | 10.0% |
| !!! | TTTTAAATTACAGAAAATTA+TGG | - | chr6_1:54174916-54174935 | None:intergenic | 10.0% |
| !! | GATAATAATAAAGGAATAAA+GGG | - | chr6_1:54171131-54171150 | None:intergenic | 15.0% |
| !! | AGATAATAATAAAGGAATAA+AGG | - | chr6_1:54171132-54171151 | None:intergenic | 15.0% |
| !!! | ATTTTTCTATTAGTTTGTTA+TGG | + | chr6_1:54171331-54171350 | Msa0888800:intron | 15.0% |
| !!! | TTTTTCTATTAGTTTGTTAT+GGG | + | chr6_1:54171332-54171351 | Msa0888800:intron | 15.0% |
| !! | TATGTTCATTAAAGATATAT+CGG | - | chr6_1:54173028-54173047 | None:intergenic | 15.0% |
| !! | ATCAATGTAAAACTAATTTA+TGG | + | chr6_1:54173177-54173196 | Msa0888800:intron | 15.0% |
| !! | TAATTATATTATAAGTAGAG+GGG | + | chr6_1:54173243-54173262 | Msa0888800:intron | 15.0% |
| !! | TTATTGTCGAAAATTAATAT+AGG | + | chr6_1:54174600-54174619 | Msa0888800:intron | 15.0% |
| !!! | AAATTTGGAATTAACTAATT+AGG | - | chr6_1:54174699-54174718 | None:intergenic | 15.0% |
| !!! | TCTTTTACATTTTCAAAATT+TGG | - | chr6_1:54174714-54174733 | None:intergenic | 15.0% |
| !!! | GTAATTTAAAATATCATAAC+CGG | + | chr6_1:54174925-54174944 | Msa0888800:intron | 15.0% |
| !! | AAACGGAAAAAAAAAATTAA+GGG | - | chr6_1:54175550-54175569 | None:intergenic | 15.0% |
| !! | TGATAATTAGAGTGAAATTA+GGG | - | chr6_1:54170928-54170947 | None:intergenic | 20.0% |
| !! | ATGATAATTAGAGTGAAATT+AGG | - | chr6_1:54170929-54170948 | None:intergenic | 20.0% |
| !!! | TATTTTTTAAACTCGGTATT+CGG | + | chr6_1:54171157-54171176 | Msa0888800:intron | 20.0% |
| !! | AAAAAATGTTCATTTCCATT+TGG | + | chr6_1:54171367-54171386 | Msa0888800:intron | 20.0% |
| !!! | CTAACTAACTAAATTTTAGT+TGG | - | chr6_1:54171449-54171468 | None:intergenic | 20.0% |
| !! | CAACTAAAATTTAGTTAGTT+AGG | + | chr6_1:54171447-54171466 | Msa0888800:intron | 20.0% |
| !!! | AATGATATGGTATAGATTTT+TGG | + | chr6_1:54171511-54171530 | Msa0888800:intron | 20.0% |
| !! | TTGAAAATTTGCATATGTAA+TGG | - | chr6_1:54172046-54172065 | None:intergenic | 20.0% |
| !! | AGTTGTTTATTAGTAGAATT+CGG | + | chr6_1:54172143-54172162 | Msa0888800:intron | 20.0% |
| !!! | GTATATTTAAAATGACGATA+TGG | - | chr6_1:54173109-54173128 | None:intergenic | 20.0% |
| !! | TAAATATACAGTTACAAATG+TGG | + | chr6_1:54173120-54173139 | Msa0888800:intron | 20.0% |
| !! | AAATATACAGTTACAAATGT+GGG | + | chr6_1:54173121-54173140 | Msa0888800:intron | 20.0% |
| !! | TTGAAAGTCTTAAATAGAAA+TGG | - | chr6_1:54173285-54173304 | None:intergenic | 20.0% |
| !! | ATAAGTATAGAAAAAAGTTC+AGG | - | chr6_1:54173541-54173560 | None:intergenic | 20.0% |
| !! | ATTTACCATTTACTTAATGT+AGG | + | chr6_1:54173763-54173782 | Msa0888800:intron | 20.0% |
| !!! | AAAACTGTTTTCATTATTTC+TGG | - | chr6_1:54173981-54174000 | None:intergenic | 20.0% |
| !!! | TTTGACATTTTCATTGTTTA+TGG | + | chr6_1:54174001-54174020 | Msa0888800:intron | 20.0% |
| !! | TTATAGGATAGAAATATTGA+AGG | - | chr6_1:54174521-54174540 | None:intergenic | 20.0% |
| !! | TCATTAGTGTTATAAGTTAT+AGG | + | chr6_1:54175050-54175069 | Msa0888800:intron | 20.0% |
| !! | AACGGAAAAAAAAAATTAAG+GGG | - | chr6_1:54175549-54175568 | None:intergenic | 20.0% |
| !! | GAAACGGAAAAAAAAAATTA+AGG | - | chr6_1:54175551-54175570 | None:intergenic | 20.0% |
| !! | AAGTAACATTTATAACTGAA+GGG | - | chr6_1:54175582-54175601 | None:intergenic | 20.0% |
| !! | AAAGTAACATTTATAACTGA+AGG | - | chr6_1:54175583-54175602 | None:intergenic | 20.0% |
| !! | TGTGTAATGATTGTAATTTA+AGG | + | chr6_1:54175685-54175704 | Msa0888800:intron | 20.0% |
| !! | GTGTAATGATTGTAATTTAA+GGG | + | chr6_1:54175686-54175705 | Msa0888800:intron | 20.0% |
| !! | CATAATCAAAAAGAAAACAA+AGG | - | chr6_1:54175789-54175808 | None:intergenic | 20.0% |
| !!! | TTTTAATTTGATTGGAGAAT+AGG | + | chr6_1:54176221-54176240 | Msa0888800:three_prime_UTR | 20.0% |
| !!! | ATTTTGAAGAAGAAGAATCA+CGG | - | chr6_1:54170806-54170825 | None:intergenic | 25.0% |
| ! | TGTGTAATTTAATTACCTGT+CGG | - | chr6_1:54170896-54170915 | None:intergenic | 25.0% |
| ! | TTAATGTTTGTATTAACAGC+AGG | + | chr6_1:54170969-54170988 | Msa0888800:intron | 25.0% |
| !! | ATTAATACTGAGCTATGTTT+TGG | - | chr6_1:54171240-54171259 | None:intergenic | 25.0% |
| ! | CTAAAATTTAGTTAGTTAGG+TGG | + | chr6_1:54171450-54171469 | Msa0888800:intron | 25.0% |
| ! | TTTGGATTGTCTTGATATAA+TGG | + | chr6_1:54171481-54171500 | Msa0888800:intron | 25.0% |
| ! | TAATGGTTTATGCAATGATA+TGG | + | chr6_1:54171498-54171517 | Msa0888800:intron | 25.0% |
| ! | TGAGTACAATATCAGATATT+AGG | + | chr6_1:54171566-54171585 | Msa0888800:intron | 25.0% |
| ! | GAGTACAATATCAGATATTA+GGG | + | chr6_1:54171567-54171586 | Msa0888800:intron | 25.0% |
| ! | ATTAGGGTTTAGTACTATAT+TGG | + | chr6_1:54171583-54171602 | Msa0888800:intron | 25.0% |
| ! | TATAAATTACCAATGATTCG+AGG | + | chr6_1:54172095-54172114 | Msa0888800:intron | 25.0% |
| ! | AGTAGAATTCGGTTATAATT+TGG | + | chr6_1:54172154-54172173 | Msa0888800:intron | 25.0% |
| ! | GTAGAATTCGGTTATAATTT+GGG | + | chr6_1:54172155-54172174 | Msa0888800:intron | 25.0% |
| ! | GCGAATGTGTTTATAAATTA+GGG | - | chr6_1:54172228-54172247 | None:intergenic | 25.0% |
| ! | TGCGAATGTGTTTATAAATT+AGG | - | chr6_1:54172229-54172248 | None:intergenic | 25.0% |
| ! | TCTGACATTTGATGAAAATA+TGG | - | chr6_1:54172254-54172273 | None:intergenic | 25.0% |
| !! | TGATTCTGGATAAACATTTT+TGG | + | chr6_1:54172354-54172373 | Msa0888800:intron | 25.0% |
| !! | GATTCTGGATAAACATTTTT+GGG | + | chr6_1:54172355-54172374 | Msa0888800:intron | 25.0% |
| ! | AAACAATGTGGTTATAAGTT+GGG | - | chr6_1:54172461-54172480 | None:intergenic | 25.0% |
| ! | TTTGGAAGAACTTATGAATA+AGG | - | chr6_1:54172647-54172666 | None:intergenic | 25.0% |
| ! | TTATGCAACAACTACTATTA+AGG | - | chr6_1:54172740-54172759 | None:intergenic | 25.0% |
| ! | TGCAACATACCAAATAAATA+AGG | - | chr6_1:54172944-54172963 | None:intergenic | 25.0% |
| ! | TTCATTAAAGATATATCGGA+TGG | - | chr6_1:54173024-54173043 | None:intergenic | 25.0% |
| !! | GTCAGTGTAAATTAGTTTAA+TGG | + | chr6_1:54173052-54173071 | Msa0888800:intron | 25.0% |
| !! | ATTAGTTTAATGGACATTCA+AGG | + | chr6_1:54173062-54173081 | Msa0888800:intron | 25.0% |
| !! | TTAGTTTAATGGACATTCAA+GGG | + | chr6_1:54173063-54173082 | Msa0888800:intron | 25.0% |
| ! | AATATACAGTTACAAATGTG+GGG | + | chr6_1:54173122-54173141 | Msa0888800:intron | 25.0% |
| !!! | TGAGTTTTTTTTGCAATTCT+TGG | + | chr6_1:54173329-54173348 | Msa0888800:intron | 25.0% |
| ! | TATACTTATTTCGATGAACT+AGG | + | chr6_1:54173552-54173571 | Msa0888800:intron | 25.0% |
| !! | GTTTGCATTGTGAAAATTTT+CGG | + | chr6_1:54173621-54173640 | Msa0888800:intron | 25.0% |
| !!! | TTTTAGCTTATTCTTTGTGT+AGG | + | chr6_1:54173690-54173709 | Msa0888800:intron | 25.0% |
| ! | ACTTCAAGAAAACTTAATGT+AGG | + | chr6_1:54173715-54173734 | Msa0888800:intron | 25.0% |
| ! | CTTCAAGAATAACTTAATGT+AGG | + | chr6_1:54173801-54173820 | Msa0888800:intron | 25.0% |
| ! | TCAGATATAAACCATTCTTA+GGG | + | chr6_1:54173830-54173849 | Msa0888800:intron | 25.0% |
| !! | TTTGAAATGAATCATTGTGA+TGG | + | chr6_1:54173922-54173941 | Msa0888800:intron | 25.0% |
| !! | TGATATTTGTACAACCATTT+TGG | + | chr6_1:54174033-54174052 | Msa0888800:intron | 25.0% |
| ! | AAAACAATAGAGAGAGAAAA+AGG | - | chr6_1:54174117-54174136 | None:intergenic | 25.0% |
| !!! | TGATATTTTGACAACCATTT+TGG | - | chr6_1:54174185-54174204 | None:intergenic | 25.0% |
| ! | TCAAAATATCACTACTCTTA+TGG | + | chr6_1:54174194-54174213 | Msa0888800:intron | 25.0% |
| !! | TATGTTTTCACAAAGTAAAC+AGG | + | chr6_1:54174307-54174326 | Msa0888800:intron | 25.0% |
| ! | AACAAGAACATGTAACATAA+TGG | - | chr6_1:54174491-54174510 | None:intergenic | 25.0% |
| ! | AGCAGAAAGATATTGAAAAA+CGG | + | chr6_1:54174807-54174826 | Msa0888800:intron | 25.0% |
| ! | TAACACTAATGAATTGTTCA+TGG | - | chr6_1:54175042-54175061 | None:intergenic | 25.0% |
| ! | TTGTAGACATTATTATGATG+AGG | + | chr6_1:54175080-54175099 | Msa0888800:intron | 25.0% |
| ! | TTGATCAAATAGATACCTTT+AGG | - | chr6_1:54175178-54175197 | None:intergenic | 25.0% |
| ! | TTTCACAAACAAAACCAAAT+TGG | + | chr6_1:54175339-54175358 | Msa0888800:CDS | 25.0% |
| ! | TTCACAAACAAAACCAAATT+GGG | + | chr6_1:54175340-54175359 | Msa0888800:CDS | 25.0% |
| !! | TTGCGTACTATTTATCTTTT+AGG | + | chr6_1:54175475-54175494 | Msa0888800:intron | 25.0% |
| ! | TTTAGGCTAAATTAAACCTT+TGG | + | chr6_1:54175492-54175511 | Msa0888800:intron | 25.0% |
| ! | GAAACCTAAAAATGACTTAA+GGG | - | chr6_1:54175519-54175538 | None:intergenic | 25.0% |
| ! | TGAAACCTAAAAATGACTTA+AGG | - | chr6_1:54175520-54175539 | None:intergenic | 25.0% |
| ! | ATTACAATCATTACACACTT+TGG | - | chr6_1:54175682-54175701 | None:intergenic | 25.0% |
| !! | CAAGTTTTTACGTTTCATTT+TGG | - | chr6_1:54175713-54175732 | None:intergenic | 25.0% |
| ! | CAAAATGAAACGTAAAAACT+TGG | + | chr6_1:54175711-54175730 | Msa0888800:intron | 25.0% |
| !!! | GTTATTTTTAGGTTTCACTT+TGG | - | chr6_1:54175738-54175757 | None:intergenic | 25.0% |
| !! | TAATTTAGGATATCTTGTTC+TGG | + | chr6_1:54175762-54175781 | Msa0888800:intron | 25.0% |
| ! | AAATTGTAGAAATAACAGTG+AGG | + | chr6_1:54175846-54175865 | Msa0888800:CDS | 25.0% |
| !!! | TTTGCACAAATTTTTTTACG+TGG | + | chr6_1:54176192-54176211 | Msa0888800:three_prime_UTR | 25.0% |
| !!! | GGTTGCTTTTTTAATTTGAT+TGG | + | chr6_1:54176213-54176232 | Msa0888800:three_prime_UTR | 25.0% |
| ! | ATATATTGCCTAGTTAATTG+AGG | - | chr6_1:54176307-54176326 | None:intergenic | 25.0% |
| ATTAGAGTGAAATTAGGGAA+GGG | - | chr6_1:54170923-54170942 | None:intergenic | 30.0% | |
| AATTAGAGTGAAATTAGGGA+AGG | - | chr6_1:54170924-54170943 | None:intergenic | 30.0% | |
| TTAACAGCAGGAAAGAATTA+AGG | + | chr6_1:54170981-54171000 | Msa0888800:intron | 30.0% | |
| GATTGAACCATCAAATTAGT+CGG | - | chr6_1:54171187-54171206 | None:intergenic | 30.0% | |
| !!! | AGCTATGTTTTGGCTTTAAA+TGG | - | chr6_1:54171230-54171249 | None:intergenic | 30.0% |
| TATTATTATGAGCGGAAAGA+TGG | + | chr6_1:54171275-54171294 | Msa0888800:intron | 30.0% | |
| AAAACTAAATCTACGCCAAA+TGG | - | chr6_1:54171385-54171404 | None:intergenic | 30.0% | |
| AAATTTAGTTAGTTAGGTGG+TGG | + | chr6_1:54171453-54171472 | Msa0888800:intron | 30.0% | |
| GGCAAAATGATGAATCTATA+AGG | + | chr6_1:54171873-54171892 | Msa0888800:intron | 30.0% | |
| GGTTGATTGTTCATATAAGT+AGG | + | chr6_1:54171894-54171913 | Msa0888800:intron | 30.0% | |
| ! | TTAAGTTGTTTATCCAAGCA+TGG | - | chr6_1:54172121-54172140 | None:intergenic | 30.0% |
| TTGACTCTGACTTACAAAAT+TGG | + | chr6_1:54172184-54172203 | Msa0888800:intron | 30.0% | |
| ATGTTTATCCAGAATCAGTT+GGG | - | chr6_1:54172351-54172370 | None:intergenic | 30.0% | |
| AATGTTTATCCAGAATCAGT+TGG | - | chr6_1:54172352-54172371 | None:intergenic | 30.0% | |
| AGATCTAGGTATTAGAAACT+TGG | + | chr6_1:54172381-54172400 | Msa0888800:intron | 30.0% | |
| GATCTAGGTATTAGAAACTT+GGG | + | chr6_1:54172382-54172401 | Msa0888800:intron | 30.0% | |
| CAAACAATGTGGTTATAAGT+TGG | - | chr6_1:54172462-54172481 | None:intergenic | 30.0% | |
| CAACTTATAACCACATTGTT+TGG | + | chr6_1:54172460-54172479 | Msa0888800:intron | 30.0% | |
| TAAAATATGGCCAAACAATG+TGG | - | chr6_1:54172473-54172492 | None:intergenic | 30.0% | |
| GTCCAACATTGGATAAAATA+TGG | - | chr6_1:54172486-54172505 | None:intergenic | 30.0% | |
| TCATAAGTTCTTCCAAATTG+TGG | + | chr6_1:54172650-54172669 | Msa0888800:intron | 30.0% | |
| GAATCAACTAGCTGTAAAAA+GGG | - | chr6_1:54172821-54172840 | None:intergenic | 30.0% | |
| AGAATCAACTAGCTGTAAAA+AGG | - | chr6_1:54172822-54172841 | None:intergenic | 30.0% | |
| ! | TTTGTACAAAGGCTTTTTGT+CGG | + | chr6_1:54172902-54172921 | Msa0888800:intron | 30.0% |
| ! | GTGTGACTACCTTATTTATT+TGG | + | chr6_1:54172932-54172951 | Msa0888800:intron | 30.0% |
| ATATGGCATGGAAAAATGAA+GGG | - | chr6_1:54173092-54173111 | None:intergenic | 30.0% | |
| ! | TTTAAAATGACGATATGGCA+TGG | - | chr6_1:54173104-54173123 | None:intergenic | 30.0% |
| TGATGAAGTGAATGATGTAA+AGG | - | chr6_1:54173215-54173234 | None:intergenic | 30.0% | |
| !!! | TTACTCTATTGTTTTTGCCA+AGG | + | chr6_1:54173445-54173464 | Msa0888800:intron | 30.0% |
| CAAGAAAAATCATCTGGAAA+TGG | + | chr6_1:54173470-54173489 | Msa0888800:CDS | 30.0% | |
| AAAGAAAGAGGAAACTTCAT+TGG | + | chr6_1:54173502-54173521 | Msa0888800:CDS | 30.0% | |
| ! | AAAAGACAAGATTTTCCCAT+CGG | - | chr6_1:54173674-54173693 | None:intergenic | 30.0% |
| GTCAGATATAAACCATTCTT+AGG | + | chr6_1:54173829-54173848 | Msa0888800:intron | 30.0% | |
| ACAACGTTTCACAAAGTAAA+CGG | - | chr6_1:54173857-54173876 | None:intergenic | 30.0% | |
| GTACAAAAGTTGTACCAAAA+TGG | - | chr6_1:54174050-54174069 | None:intergenic | 30.0% | |
| TCTCAAAAGTTGTACCAAAA+TGG | + | chr6_1:54174168-54174187 | Msa0888800:intron | 30.0% | |
| TATGGTTGATTGAGTGTTAT+AGG | - | chr6_1:54174537-54174556 | None:intergenic | 30.0% | |
| ACATTTACTTGCAAAACACT+TGG | - | chr6_1:54174569-54174588 | None:intergenic | 30.0% | |
| ! | AAATTGCCAGGCTTTAATAT+GGG | + | chr6_1:54174638-54174657 | Msa0888800:intron | 30.0% |
| TAATTAGTGTCCAAAGTTCA+GGG | - | chr6_1:54174676-54174695 | None:intergenic | 30.0% | |
| CAGAAAATTATGGCCAAATA+TGG | - | chr6_1:54174906-54174925 | None:intergenic | 30.0% | |
| ! | TATAGTGATAATGATGTCCA+GGG | - | chr6_1:54174975-54174994 | None:intergenic | 30.0% |
| AACAAGTAATTGCAACATGT+TGG | - | chr6_1:54174999-54175018 | None:intergenic | 30.0% | |
| TAATGAATTGTTCATGGTCA+AGG | - | chr6_1:54175036-54175055 | None:intergenic | 30.0% | |
| ! | TTTAGGATGATATTGTCAAG+AGG | + | chr6_1:54175119-54175138 | Msa0888800:intron | 30.0% |
| !!! | GCTTTTAGAATTTGTATCAC+AGG | - | chr6_1:54175217-54175236 | None:intergenic | 30.0% |
| ATTATGGGCTTGAAAAAGAT+AGG | + | chr6_1:54175302-54175321 | Msa0888800:CDS | 30.0% | |
| GTGAATTAACTGATATTCTC+AGG | + | chr6_1:54176257-54176276 | Msa0888800:three_prime_UTR | 30.0% | |
| ATGATGTTCCTCAATTAACT+AGG | + | chr6_1:54176296-54176315 | Msa0888800:three_prime_UTR | 30.0% | |
| TGTACATTTCTCAAAAGCAA+AGG | - | chr6_1:54176336-54176355 | None:intergenic | 30.0% | |
| CACAGCAAGTACATGTAAAA+TGG | - | chr6_1:54171548-54171567 | None:intergenic | 35.0% | |
| TGGTATTTATAGCCCTTTGT+GGG | + | chr6_1:54171632-54171651 | Msa0888800:intron | 35.0% | |
| GACCGTTAATATATTCCCAA+GGG | - | chr6_1:54171822-54171841 | None:intergenic | 35.0% | |
| !!! | ACATTTTTGGGTTGAGATCT+AGG | + | chr6_1:54172367-54172386 | Msa0888800:intron | 35.0% |
| TAGGTATTAGAAACTTGGGT+TGG | + | chr6_1:54172386-54172405 | Msa0888800:intron | 35.0% | |
| AGGTATTAGAAACTTGGGTT+GGG | + | chr6_1:54172387-54172406 | Msa0888800:intron | 35.0% | |
| TATAAGGCTGAGTAAGAGTT+AGG | - | chr6_1:54172413-54172432 | None:intergenic | 35.0% | |
| !! | ACCTCAAAGTCGGTTTTATA+AGG | - | chr6_1:54172429-54172448 | None:intergenic | 35.0% |
| ! | GGCCATATTTTATCCAATGT+TGG | + | chr6_1:54172481-54172500 | Msa0888800:intron | 35.0% |
| AAGTGTTAAGAGTCCAACAT+TGG | - | chr6_1:54172497-54172516 | None:intergenic | 35.0% | |
| !! | TTTCTTGTTCCTTTTGCTGT+AGG | + | chr6_1:54172874-54172893 | Msa0888800:intron | 35.0% |
| !! | TTCTTGTTCCTTTTGCTGTA+GGG | + | chr6_1:54172875-54172894 | Msa0888800:intron | 35.0% |
| ! | TGTAGGGTCTTTTTGTACAA+AGG | + | chr6_1:54172891-54172910 | Msa0888800:intron | 35.0% |
| GATATGGCATGGAAAAATGA+AGG | - | chr6_1:54173093-54173112 | None:intergenic | 35.0% | |
| ACATCATTCACTTCATCACT+TGG | + | chr6_1:54173217-54173236 | Msa0888800:intron | 35.0% | |
| ! | AGATGATTTTTCTTGTGCCT+TGG | - | chr6_1:54173465-54173484 | None:intergenic | 35.0% |
| AAGGCACAAGAAAAATCATC+TGG | + | chr6_1:54173464-54173483 | Msa0888800:intron | 35.0% | |
| GAAAAATCATCTGGAAATGG+TGG | + | chr6_1:54173473-54173492 | Msa0888800:CDS | 35.0% | |
| AGAGGAAACTTCATTGGATA+TGG | + | chr6_1:54173508-54173527 | Msa0888800:CDS | 35.0% | |
| GAACTAGGCACTAGTAAATT+AGG | + | chr6_1:54173567-54173586 | Msa0888800:intron | 35.0% | |
| ! | TTGTTCATTGTTTTCACCGA+TGG | + | chr6_1:54173655-54173674 | Msa0888800:intron | 35.0% |
| ! | TGTTCATTGTTTTCACCGAT+GGG | + | chr6_1:54173656-54173675 | Msa0888800:intron | 35.0% |
| AGTGGCCTACATTAAGTAAA+TGG | - | chr6_1:54173771-54173790 | None:intergenic | 35.0% | |
| TCTTGAAGTTATTCTGACAG+TGG | - | chr6_1:54173789-54173808 | None:intergenic | 35.0% | |
| GAATGGTTTATATCTGACAG+TGG | - | chr6_1:54173827-54173846 | None:intergenic | 35.0% | |
| ! | TTGTTGTTCTCTCTTCTCAT+TGG | - | chr6_1:54174143-54174162 | None:intergenic | 35.0% |
| AAGAACAAGCTAAACCTATG+AGG | - | chr6_1:54174346-54174365 | None:intergenic | 35.0% | |
| !! | ACATGTACTGATTGTGTCTT+AGG | + | chr6_1:54174396-54174415 | Msa0888800:intron | 35.0% |
| !! | AGGTTGACTTGGTTCTTAAT+TGG | + | chr6_1:54174416-54174435 | Msa0888800:intron | 35.0% |
| ATCAATAACTATTGACCGCT+TGG | - | chr6_1:54174460-54174479 | None:intergenic | 35.0% | |
| AACACTTGGCTTACAAGTTA+TGG | - | chr6_1:54174555-54174574 | None:intergenic | 35.0% | |
| ACTTGTAAAAGCAAATTGCC+AGG | + | chr6_1:54174626-54174645 | Msa0888800:intron | 35.0% | |
| ! | CAAATTGCCAGGCTTTAATA+TGG | + | chr6_1:54174637-54174656 | Msa0888800:intron | 35.0% |
| GTAATTAGTGTCCAAAGTTC+AGG | - | chr6_1:54174677-54174696 | None:intergenic | 35.0% | |
| GCAACGACTCATATATTTGT+AGG | + | chr6_1:54174747-54174766 | Msa0888800:intron | 35.0% | |
| ! | ATAGTGATAATGATGTCCAG+GGG | - | chr6_1:54174974-54174993 | None:intergenic | 35.0% |
| ! | CTATAGTGATAATGATGTCC+AGG | - | chr6_1:54174976-54174995 | None:intergenic | 35.0% |
| ! | GTTCTACACTGTTCTGTTTT+AGG | + | chr6_1:54175102-54175121 | Msa0888800:intron | 35.0% |
| GAGGATTGAAGAAAGACTTT+CGG | + | chr6_1:54175138-54175157 | Msa0888800:CDS | 35.0% | |
| TTGAAGAAAGACTTTCGGTT+TGG | + | chr6_1:54175143-54175162 | Msa0888800:CDS | 35.0% | |
| ! | GTTTGGACTTTTCTTCCTAA+AGG | + | chr6_1:54175160-54175179 | Msa0888800:CDS | 35.0% |
| TTTGTATCACAGGCAAATAC+TGG | - | chr6_1:54175207-54175226 | None:intergenic | 35.0% | |
| CTTTACAGGTCATGCATTAT+GGG | + | chr6_1:54175287-54175306 | Msa0888800:CDS | 35.0% | |
| AAAACCAAATTGGGATCAAC+CGG | + | chr6_1:54175349-54175368 | Msa0888800:CDS | 35.0% | |
| AAAATGACTTAAGGGACCAA+AGG | - | chr6_1:54175511-54175530 | None:intergenic | 35.0% | |
| !!! | TGGTCCCTTAAGTCATTTTT+AGG | + | chr6_1:54175512-54175531 | Msa0888800:intron | 35.0% |
| CTGAAGGGACTAAAATGAAA+CGG | - | chr6_1:54175567-54175586 | None:intergenic | 35.0% | |
| ! | CATTTTTCATTCGAGTCCAT+AGG | + | chr6_1:54175615-54175634 | Msa0888800:intron | 35.0% |
| AGTTCGTCAAATGTTTCCTA+TGG | - | chr6_1:54175634-54175653 | None:intergenic | 35.0% | |
| TCTTGTCAGGAGATGTATTT+AGG | - | chr6_1:54175918-54175937 | None:intergenic | 35.0% | |
| TTCTATACAAGATCGATCAG+TGG | + | chr6_1:54175997-54176016 | Msa0888800:CDS | 35.0% | |
| CTGATTACTATGGTACTTGT+CGG | + | chr6_1:54176136-54176155 | Msa0888800:CDS | 35.0% | |
| ATTCTGAGCTGCATATCAAA+AGG | + | chr6_1:54176395-54176414 | Msa0888800:three_prime_UTR | 35.0% | |
| TTGAAGAAGAAGAATCACGG+TGG | - | chr6_1:54170803-54170822 | None:intergenic | 40.0% | |
| GAAGAAGGTGATGAGGATAA+AGG | - | chr6_1:54170845-54170864 | None:intergenic | 40.0% | |
| AATTACCTGTCGGAGAAAGA+AGG | - | chr6_1:54170886-54170905 | None:intergenic | 40.0% | |
| !! | TTGAAGAAAGTACCTGACCT+TGG | - | chr6_1:54171100-54171119 | None:intergenic | 40.0% |
| ! | AGTTAGGTGGTGGTTAACTT+TGG | + | chr6_1:54171463-54171482 | Msa0888800:intron | 40.0% |
| CACTCTTGGAATCATTCTCA+AGG | - | chr6_1:54171614-54171633 | None:intergenic | 40.0% | |
| CTTGAGAATGATTCCAAGAG+TGG | + | chr6_1:54171612-54171631 | Msa0888800:intron | 40.0% | |
| AGGGCTATAAATACCACTCT+TGG | - | chr6_1:54171628-54171647 | None:intergenic | 40.0% | |
| GTGGTATTTATAGCCCTTTG+TGG | + | chr6_1:54171631-54171650 | Msa0888800:intron | 40.0% | |
| !! | TTCTAGAAGCATCTAGAAGC+AGG | - | chr6_1:54171710-54171729 | None:intergenic | 40.0% |
| ! | ATGCTTCTAGAAGCTGACTA+AGG | + | chr6_1:54171718-54171737 | Msa0888800:intron | 40.0% |
| GGCCCTTGGGAATATATTAA+CGG | + | chr6_1:54171817-54171836 | Msa0888800:intron | 40.0% | |
| GGACCGTTAATATATTCCCA+AGG | - | chr6_1:54171823-54171842 | None:intergenic | 40.0% | |
| ! | GCCTTATAAAACCGACTTTG+AGG | + | chr6_1:54172425-54172444 | Msa0888800:intron | 40.0% |
| !! | TAAAACCGACTTTGAGGTGA+AGG | + | chr6_1:54172431-54172450 | Msa0888800:intron | 40.0% |
| GAAAACCTTCACCTCAAAGT+CGG | - | chr6_1:54172439-54172458 | None:intergenic | 40.0% | |
| TCATTGCTGCAACCACAATT+TGG | - | chr6_1:54172665-54172684 | None:intergenic | 40.0% | |
| ! | GCTTCGTGATTCTTGATAGT+GGG | + | chr6_1:54172693-54172712 | Msa0888800:intron | 40.0% |
| !! | CTTCGTGATTCTTGATAGTG+GGG | + | chr6_1:54172694-54172713 | Msa0888800:intron | 40.0% |
| CAAAAAGACCCTACAGCAAA+AGG | - | chr6_1:54172886-54172905 | None:intergenic | 40.0% | |
| ! | CAAAGGCTTTTTGTCGGATA+AGG | + | chr6_1:54172908-54172927 | Msa0888800:intron | 40.0% |
| TTGGTATGTTGCAGTCTCAT+TGG | + | chr6_1:54172951-54172970 | Msa0888800:intron | 40.0% | |
| ! | ATGTTGCAGTCTCATTGGTT+TGG | + | chr6_1:54172956-54172975 | Msa0888800:intron | 40.0% |
| TGGTGGCTATTCAAAGAAAG+AGG | + | chr6_1:54173490-54173509 | Msa0888800:CDS | 40.0% | |
| CTTAATGTAGGCCAATGTGA+CGG | + | chr6_1:54173727-54173746 | Msa0888800:intron | 40.0% | |
| CATTCAGAAATCCGTCACAT+TGG | - | chr6_1:54173741-54173760 | None:intergenic | 40.0% | |
| AAGTAAACGGACCCTAAGAA+TGG | - | chr6_1:54173844-54173863 | None:intergenic | 40.0% | |
| !! | GATTGTGTCTTAGGTTGACT+TGG | + | chr6_1:54174405-54174424 | Msa0888800:intron | 40.0% |
| TATTGACCGCTTGGTAGAAA+AGG | - | chr6_1:54174451-54174470 | None:intergenic | 40.0% | |
| ! | CCAGGCTTTAATATGGGATT+GGG | + | chr6_1:54174644-54174663 | Msa0888800:intron | 40.0% |
| TGGGAAAAAACCCTGAACTT+TGG | + | chr6_1:54174663-54174682 | Msa0888800:intron | 40.0% | |
| CCATAATGCATGACCTGTAA+AGG | - | chr6_1:54175289-54175308 | None:intergenic | 40.0% | |
| CCTTTACAGGTCATGCATTA+TGG | + | chr6_1:54175286-54175305 | Msa0888800:CDS | 40.0% | |
| ATGGGCTTGAAAAAGATAGG+CGG | + | chr6_1:54175305-54175324 | Msa0888800:CDS | 40.0% | |
| AGAATCACTGTTGCCATCAA+AGG | - | chr6_1:54175376-54175395 | None:intergenic | 40.0% | |
| ATCTCTCGAATGCTACTCAA+GGG | + | chr6_1:54175398-54175417 | Msa0888800:intron | 40.0% | |
| AATCCTCTTTCCTGAATCAG+TGG | + | chr6_1:54175426-54175445 | Msa0888800:intron | 40.0% | |
| AGGTTCTCCAACCAGTTAAA+GGG | + | chr6_1:54175866-54175885 | Msa0888800:CDS | 40.0% | |
| AGAACTGCATTCCCTTTAAC+TGG | - | chr6_1:54175880-54175899 | None:intergenic | 40.0% | |
| ! | ACATATCGCCTTTAAGGACA+GGG | - | chr6_1:54175960-54175979 | None:intergenic | 40.0% |
| TATACAAGATCGATCAGTGG+AGG | + | chr6_1:54176000-54176019 | Msa0888800:CDS | 40.0% | |
| ATACAAGATCGATCAGTGGA+GGG | + | chr6_1:54176001-54176020 | Msa0888800:CDS | 40.0% | |
| AAGATGATAGTTGTCCAGCT+TGG | + | chr6_1:54176064-54176083 | Msa0888800:CDS | 40.0% | |
| AGATGATAGTTGTCCAGCTT+GGG | + | chr6_1:54176065-54176084 | Msa0888800:CDS | 40.0% | |
| GTTGGATCTCCTGATTACTA+TGG | + | chr6_1:54176126-54176145 | Msa0888800:CDS | 40.0% | |
| CGACAAGTACCATAGTAATC+AGG | - | chr6_1:54176138-54176157 | None:intergenic | 40.0% | |
| AATGCATGCTGATGAGAAGT+TGG | + | chr6_1:54176168-54176187 | Msa0888800:exon | 40.0% | |
| !! | AGAAGGTGTTAGAAGCGAGA+GGG | - | chr6_1:54170869-54170888 | None:intergenic | 45.0% |
| !! | AAGAAGGTGTTAGAAGCGAG+AGG | - | chr6_1:54170870-54170889 | None:intergenic | 45.0% |
| TAACACCTTCTTTCTCCGAC+AGG | + | chr6_1:54170878-54170897 | Msa0888800:CDS | 45.0% | |
| GAGATTTGGACAACACGTGA+AGG | - | chr6_1:54171070-54171089 | None:intergenic | 45.0% | |
| CACGTGTTGTCCAAATCTCT+TGG | + | chr6_1:54171071-54171090 | Msa0888800:intron | 45.0% | |
| TCCAAATCTCTTGGCAACCA+AGG | + | chr6_1:54171080-54171099 | Msa0888800:intron | 45.0% | |
| ACCTTGGTTGCCAAGAGATT+TGG | - | chr6_1:54171084-54171103 | None:intergenic | 45.0% | |
| CTTTAAATGGACCCCTCAAG+TGG | - | chr6_1:54171217-54171236 | None:intergenic | 45.0% | |
| ATTTATAGCCCTTTGTGGGC+TGG | + | chr6_1:54171636-54171655 | Msa0888800:intron | 45.0% | |
| ACTTAAGCTCCAAGCAAGCT+GGG | + | chr6_1:54171669-54171688 | Msa0888800:intron | 45.0% | |
| ! | CTTCTAGAAGCTGACTAAGG+CGG | + | chr6_1:54171721-54171740 | Msa0888800:intron | 45.0% |
| ! | TGTGCCTTTAGGAATGCAGA+TGG | + | chr6_1:54172019-54172038 | Msa0888800:intron | 45.0% |
| TGGACCATCTGCATTCCTAA+AGG | - | chr6_1:54172026-54172045 | None:intergenic | 45.0% | |
| CAAGAATCACGAAGCGATTG+TGG | - | chr6_1:54172688-54172707 | None:intergenic | 45.0% | |
| CGCTTCGTGATTCTTGATAG+TGG | + | chr6_1:54172692-54172711 | Msa0888800:intron | 45.0% | |
| GTTACAAATGTGGGGTGATG+TGG | + | chr6_1:54173130-54173149 | Msa0888800:intron | 45.0% | |
| GGGGTGATGTGGCAAAATAA+AGG | + | chr6_1:54173141-54173160 | Msa0888800:intron | 45.0% | |
| GCTCTTACGTTTCACCTCAT+AGG | + | chr6_1:54174329-54174348 | Msa0888800:intron | 45.0% | |
| ! | GCCAGGCTTTAATATGGGAT+TGG | + | chr6_1:54174643-54174662 | Msa0888800:intron | 45.0% |
| CCCAATCCCATATTAAAGCC+TGG | - | chr6_1:54174647-54174666 | None:intergenic | 45.0% | |
| GTGGTTGCATCAGCCATATT+TGG | + | chr6_1:54174890-54174909 | Msa0888800:intron | 45.0% | |
| !!! | GAGGTTTTAAACTGTGGTCG+CGG | - | chr6_1:54174952-54174971 | None:intergenic | 45.0% |
| ATCACAGGCAAATACTGGTG+TGG | - | chr6_1:54175202-54175221 | None:intergenic | 45.0% | |
| AGAGAACAGCAAGCCTTTAC+AGG | + | chr6_1:54175273-54175292 | Msa0888800:intron | 45.0% | |
| CATCTCTCGAATGCTACTCA+AGG | + | chr6_1:54175397-54175416 | Msa0888800:intron | 45.0% | |
| TCTCTCGAATGCTACTCAAG+GGG | + | chr6_1:54175399-54175418 | Msa0888800:intron | 45.0% | |
| !! | TCACCACTGATTCAGGAAAG+AGG | - | chr6_1:54175432-54175451 | None:intergenic | 45.0% |
| TCCTGAATCAGTGGTGAGTA+CGG | + | chr6_1:54175435-54175454 | Msa0888800:intron | 45.0% | |
| ATTTGACCAGCTGCTACTCT+TGG | - | chr6_1:54175830-54175849 | None:intergenic | 45.0% | |
| GAGGTTCTCCAACCAGTTAA+AGG | + | chr6_1:54175865-54175884 | Msa0888800:CDS | 45.0% | |
| CTGCATTCCCTTTAACTGGT+TGG | - | chr6_1:54175876-54175895 | None:intergenic | 45.0% | |
| ! | CACATATCGCCTTTAAGGAC+AGG | - | chr6_1:54175961-54175980 | None:intergenic | 45.0% |
| CTGTCCTTAAAGGCGATATG+TGG | + | chr6_1:54175959-54175978 | Msa0888800:CDS | 45.0% | |
| CAGACCACATATCGCCTTTA+AGG | - | chr6_1:54175966-54175985 | None:intergenic | 45.0% | |
| GAGATCCAACCATGTAGACA+GGG | - | chr6_1:54176116-54176135 | None:intergenic | 45.0% | |
| !! | ATATATATAGATAATAATAA+AGG | - | chr6_1:54171140-54171159 | None:intergenic | 5.0% |
| AGAGGGTGAAGAAGGTGATG+AGG | - | chr6_1:54170852-54170871 | None:intergenic | 50.0% | |
| TAGAAGCGAGAGGGTGAAGA+AGG | - | chr6_1:54170860-54170879 | None:intergenic | 50.0% | |
| ATCTCTTGGCAACCAAGGTC+AGG | + | chr6_1:54171085-54171104 | Msa0888800:intron | 50.0% | |
| CGGCGAACCGACTAATTTGA+TGG | + | chr6_1:54171177-54171196 | Msa0888800:intron | 50.0% | |
| TCAATCTCACCGTCCACTTG+AGG | + | chr6_1:54171201-54171220 | Msa0888800:intron | 50.0% | |
| CAATCTCACCGTCCACTTGA+GGG | + | chr6_1:54171202-54171221 | Msa0888800:intron | 50.0% | |
| AATCTCACCGTCCACTTGAG+GGG | + | chr6_1:54171203-54171222 | Msa0888800:intron | 50.0% | |
| AAATGGACCCCTCAAGTGGA+CGG | - | chr6_1:54171213-54171232 | None:intergenic | 50.0% | |
| GACTTAAGCTCCAAGCAAGC+TGG | + | chr6_1:54171668-54171687 | Msa0888800:intron | 50.0% | |
| ! | GATCTAAAGCCCAGCTTGCT+TGG | - | chr6_1:54171681-54171700 | None:intergenic | 50.0% |
| CAGAATGGCTCCAAAGGACT+AGG | - | chr6_1:54171765-54171784 | None:intergenic | 50.0% | |
| !! | CTAGTCCTTTGGAGCCATTC+TGG | + | chr6_1:54171763-54171782 | Msa0888800:intron | 50.0% |
| !! | TCCTTTGGAGCCATTCTGGA+GGG | + | chr6_1:54171767-54171786 | Msa0888800:intron | 50.0% |
| TGTCCCAAGACTCGTGCTTA+GGG | - | chr6_1:54171852-54171871 | None:intergenic | 50.0% | |
| TTGTCCCAAGACTCGTGCTT+AGG | - | chr6_1:54171853-54171872 | None:intergenic | 50.0% | |
| TAAGCACGAGTCTTGGGACA+AGG | + | chr6_1:54171852-54171871 | Msa0888800:intron | 50.0% | |
| CGTGCTTTCAGATGCTTGCT+AGG | + | chr6_1:54171940-54171959 | Msa0888800:intron | 50.0% | |
| ! | GCTTTCAGATGCTTGCTAGG+CGG | + | chr6_1:54171943-54171962 | Msa0888800:intron | 50.0% |
| AAGGCACAGATGCCTCAAGA+AGG | - | chr6_1:54172007-54172026 | None:intergenic | 50.0% | |
| ! | CTTGAGGCATCTGTGCCTTT+AGG | + | chr6_1:54172008-54172027 | Msa0888800:intron | 50.0% |
| CAAGCATGGCCTCGAATCAT+TGG | - | chr6_1:54172107-54172126 | None:intergenic | 50.0% | |
| CAATGATTCGAGGCCATGCT+TGG | + | chr6_1:54172105-54172124 | Msa0888800:intron | 50.0% | |
| ! | CCAGAGCCTTTTCTACCAAG+CGG | + | chr6_1:54174442-54174461 | Msa0888800:intron | 50.0% |
| TGTAGGTCCTAACCTGCTCT+CGG | + | chr6_1:54174764-54174783 | Msa0888800:intron | 50.0% | |
| ACGGTCTGCAATCGCAATTG+TGG | + | chr6_1:54174826-54174845 | Msa0888800:intron | 50.0% | |
| TGCAATCGCAATTGTGGCTG+CGG | + | chr6_1:54174832-54174851 | Msa0888800:intron | 50.0% | |
| TTTCCGTGACTGTGTCAGTG+TGG | + | chr6_1:54174871-54174890 | Msa0888800:intron | 50.0% | |
| CAACCACACTGACACAGTCA+CGG | - | chr6_1:54174877-54174896 | None:intergenic | 50.0% | |
| TTTAAACTGTGGTCGCGGTC+CGG | - | chr6_1:54174947-54174966 | None:intergenic | 50.0% | |
| !!! | CCAGGGGAGGTTTTAAACTG+TGG | - | chr6_1:54174958-54174977 | None:intergenic | 50.0% |
| ! | CCACAGTTTAAAACCTCCCC+TGG | + | chr6_1:54174955-54174974 | Msa0888800:intron | 50.0% |
| ! | GTGATAATGATGTCCAGGGG+AGG | - | chr6_1:54174971-54174990 | None:intergenic | 50.0% |
| AGGTCCGGTTGATCCCAATT+TGG | - | chr6_1:54175356-54175375 | None:intergenic | 50.0% | |
| CACTGTTGCCATCAAAGGTC+CGG | - | chr6_1:54175371-54175390 | None:intergenic | 50.0% | |
| CTCTCGAATGCTACTCAAGG+GGG | + | chr6_1:54175400-54175419 | Msa0888800:intron | 50.0% | |
| GCGTGTAAGCTACTCTTGTC+AGG | - | chr6_1:54175931-54175950 | None:intergenic | 50.0% | |
| AGGGAAAGTCTCAACTACGC+TGG | + | chr6_1:54176020-54176039 | Msa0888800:CDS | 50.0% | |
| CAGCAACGGGAGAATGTCAA+CGG | + | chr6_1:54176088-54176107 | Msa0888800:CDS | 50.0% | |
| TCAACGGAACCCTGTCTACA+TGG | + | chr6_1:54176104-54176123 | Msa0888800:CDS | 50.0% | |
| GGAGATCCAACCATGTAGAC+AGG | - | chr6_1:54176117-54176136 | None:intergenic | 50.0% | |
| CGCTGTAACCAGCCCACAAA+GGG | - | chr6_1:54171647-54171666 | None:intergenic | 55.0% | |
| ACGCTGTAACCAGCCCACAA+AGG | - | chr6_1:54171648-54171667 | None:intergenic | 55.0% | |
| !! | GTCCTTTGGAGCCATTCTGG+AGG | + | chr6_1:54171766-54171785 | Msa0888800:intron | 55.0% |
| AAAGCCCTCCAGAAAGGCTC+AGG | - | chr6_1:54171795-54171814 | None:intergenic | 55.0% | |
| ! | AGCCTTTCTGGAGGGCTTTC+AGG | + | chr6_1:54171796-54171815 | Msa0888800:intron | 55.0% |
| TCCCAAGACTCGTGCTTAGG+GGG | - | chr6_1:54171850-54171869 | None:intergenic | 55.0% | |
| GTCCCAAGACTCGTGCTTAG+GGG | - | chr6_1:54171851-54171870 | None:intergenic | 55.0% | |
| ! | TTCAGATGCTTGCTAGGCGG+CGG | + | chr6_1:54171946-54171965 | Msa0888800:intron | 55.0% |
| AAGAAGGCTCCCTGAAGCTC+GGG | - | chr6_1:54171991-54172010 | None:intergenic | 55.0% | |
| CAAGAAGGCTCCCTGAAGCT+CGG | - | chr6_1:54171992-54172011 | None:intergenic | 55.0% | |
| AGCTTCAGGGAGCCTTCTTG+AGG | + | chr6_1:54171992-54172011 | Msa0888800:intron | 55.0% | |
| TCACCGCTATCAGACCACTC+GGG | - | chr6_1:54172313-54172332 | None:intergenic | 55.0% | |
| GTCACCGCTATCAGACCACT+CGG | - | chr6_1:54172314-54172333 | None:intergenic | 55.0% | |
| ! | GATAGCGGTGACCTGATAGC+AGG | + | chr6_1:54172322-54172341 | Msa0888800:intron | 55.0% |
| CAGTTGGGCAACCTGCTATC+AGG | - | chr6_1:54172336-54172355 | None:intergenic | 55.0% | |
| ! | GCAGGTTGCCCAACTGATTC+TGG | + | chr6_1:54172340-54172359 | Msa0888800:intron | 55.0% |
| CCGCTTGGTAGAAAAGGCTC+TGG | - | chr6_1:54174445-54174464 | None:intergenic | 55.0% | |
| GGGATCAACCGGACCTTTGA+TGG | + | chr6_1:54175360-54175379 | Msa0888800:CDS | 55.0% | |
| !! | GCCGTACTCACCACTGATTC+AGG | - | chr6_1:54175439-54175458 | None:intergenic | 55.0% |
| CAGCTGCTACTCTTGGTCTG+TGG | - | chr6_1:54175823-54175842 | None:intergenic | 55.0% | |
| CACAGACCAAGAGTAGCAGC+TGG | + | chr6_1:54175821-54175840 | Msa0888800:intron | 55.0% | |
| GCTCGATGCCCTGTCCTTAA+AGG | + | chr6_1:54175949-54175968 | Msa0888800:CDS | 55.0% | |
| TTGTCCAGCTTGGGCAGCAA+CGG | + | chr6_1:54176074-54176093 | Msa0888800:CDS | 55.0% | |
| CGGAACCCTGTCTACATGGT+TGG | + | chr6_1:54176108-54176127 | Msa0888800:CDS | 55.0% | |
| GAGCGGAAAGATGGACGCGT+AGG | + | chr6_1:54171284-54171303 | Msa0888800:intron | 60.0% | |
| ! | GAAGGGTGCGCCTAGTCCTT+TGG | + | chr6_1:54171752-54171771 | Msa0888800:intron | 60.0% |
| GCCCTCCAGAATGGCTCCAA+AGG | - | chr6_1:54171771-54171790 | None:intergenic | 60.0% | |
| GGCCTGAAAGCCCTCCAGAA+AGG | - | chr6_1:54171801-54171820 | None:intergenic | 60.0% | |
| TGGAGGGCTTTCAGGCCCTT+GGG | + | chr6_1:54171804-54171823 | Msa0888800:intron | 60.0% | |
| AGCCCCCTAAGCACGAGTCT+TGG | + | chr6_1:54171845-54171864 | Msa0888800:intron | 60.0% | |
| GCCCCCTAAGCACGAGTCTT+GGG | + | chr6_1:54171846-54171865 | Msa0888800:intron | 60.0% | |
| AGGGACACACCCGAGCTTCA+GGG | + | chr6_1:54171979-54171998 | Msa0888800:intron | 60.0% | |
| ATGCTCCAGATGGGCGTGAG+GGG | - | chr6_1:54172288-54172307 | None:intergenic | 60.0% | |
| CATGCTCCAGATGGGCGTGA+GGG | - | chr6_1:54172289-54172308 | None:intergenic | 60.0% | |
| ACTCGGGCCATGCTCCAGAT+GGG | - | chr6_1:54172297-54172316 | None:intergenic | 60.0% | |
| TGGCCCGAGTGGTCTGATAG+CGG | + | chr6_1:54172307-54172326 | Msa0888800:intron | 60.0% | |
| AGCAGAGCCGAGAGCAGGTT+AGG | - | chr6_1:54174774-54174793 | None:intergenic | 60.0% | |
| CAAACAGCAGAGCCGAGAGC+AGG | - | chr6_1:54174779-54174798 | None:intergenic | 60.0% | |
| TGTCCAGCTTGGGCAGCAAC+GGG | + | chr6_1:54176075-54176094 | Msa0888800:CDS | 60.0% | |
| ACTAAGGCGGCGCCTCTGGA+AGG | + | chr6_1:54171734-54171753 | Msa0888800:intron | 65.0% | |
| ! | CTAAGGCGGCGCCTCTGGAA+GGG | + | chr6_1:54171735-54171754 | Msa0888800:intron | 65.0% |
| GACTAGGCGCACCCTTCCAG+AGG | - | chr6_1:54171749-54171768 | None:intergenic | 65.0% | |
| GGCGCCTGAGCCTTTCTGGA+GGG | + | chr6_1:54171788-54171807 | Msa0888800:intron | 65.0% | |
| CTGGAGGGCTTTCAGGCCCT+TGG | + | chr6_1:54171803-54171822 | Msa0888800:intron | 65.0% | |
| GACTCGTGCTTAGGGGGCTG+TGG | - | chr6_1:54171844-54171863 | None:intergenic | 65.0% | |
| GAGGGACACACCCGAGCTTC+AGG | + | chr6_1:54171978-54171997 | Msa0888800:intron | 65.0% | |
| TACACCCCCTCACGCCCATC+TGG | + | chr6_1:54172280-54172299 | Msa0888800:intron | 65.0% | |
| TGCTCCAGATGGGCGTGAGG+GGG | - | chr6_1:54172287-54172306 | None:intergenic | 65.0% | |
| CCATGCTCCAGATGGGCGTG+AGG | - | chr6_1:54172290-54172309 | None:intergenic | 65.0% | |
| ! | CCTCACGCCCATCTGGAGCA+TGG | + | chr6_1:54172287-54172306 | Msa0888800:intron | 65.0% |
| CACTCGGGCCATGCTCCAGA+TGG | - | chr6_1:54172298-54172317 | None:intergenic | 65.0% | |
| ! | CATCTGGAGCATGGCCCGAG+TGG | + | chr6_1:54172296-54172315 | Msa0888800:intron | 65.0% |
| TCTCCCGTTGCTGCCCAAGC+TGG | - | chr6_1:54176081-54176100 | None:intergenic | 65.0% | |
| GCTGACTAAGGCGGCGCCTC+TGG | + | chr6_1:54171730-54171749 | Msa0888800:intron | 70.0% | |
| GGCTCAGGCGCCCTCCAGAA+TGG | - | chr6_1:54171780-54171799 | None:intergenic | 70.0% | |
| !! | GGAGGGCGCCTGAGCCTTTC+TGG | + | chr6_1:54171784-54171803 | Msa0888800:intron | 70.0% |
| GGGCGCCTGAGCCTTTCTGG+AGG | + | chr6_1:54171787-54171806 | Msa0888800:intron | 70.0% | |
| TGCTAGGCGGCGGTGCCTCT+CGG | + | chr6_1:54171956-54171975 | Msa0888800:intron | 70.0% | |
| CTCGGGTGTGTCCCTCCGAG+AGG | - | chr6_1:54171974-54171993 | None:intergenic | 70.0% | |
| TAGGCGGCGGTGCCTCTCGG+AGG | + | chr6_1:54171959-54171978 | Msa0888800:intron | 75.0% | |
| AGGCGGCGGTGCCTCTCGGA+GGG | + | chr6_1:54171960-54171979 | Msa0888800:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 54170758 | 54176454 | 54170758 | ID=Msa0888800;Name=Msa0888800 |
| chr6_1 | mRNA | 54170758 | 54176454 | 54170758 | ID=Msa0888800-mRNA-1;Parent=Msa0888800;Name=Msa0888800-mRNA-1;_AED=0.24;_eAED=0.24;_QI=71|0.6|0.66|1|0.8|0.83|6|275|249 |
| chr6_1 | exon | 54170758 | 54170899 | 54170758 | ID=Msa0888800-mRNA-1:exon:10868;Parent=Msa0888800-mRNA-1 |
| chr6_1 | exon | 54170988 | 54171075 | 54170988 | ID=Msa0888800-mRNA-1:exon:10869;Parent=Msa0888800-mRNA-1 |
| chr6_1 | exon | 54173467 | 54173532 | 54173467 | ID=Msa0888800-mRNA-1:exon:10870;Parent=Msa0888800-mRNA-1 |
| chr6_1 | exon | 54175124 | 54175181 | 54175124 | ID=Msa0888800-mRNA-1:exon:10871;Parent=Msa0888800-mRNA-1 |
| chr6_1 | exon | 54175275 | 54175387 | 54175275 | ID=Msa0888800-mRNA-1:exon:10872;Parent=Msa0888800-mRNA-1 |
| chr6_1 | exon | 54175826 | 54176454 | 54175826 | ID=Msa0888800-mRNA-1:exon:10873;Parent=Msa0888800-mRNA-1 |
| chr6_1 | five_prime_UTR | 54170758 | 54170828 | 54170758 | ID=Msa0888800-mRNA-1:five_prime_utr;Parent=Msa0888800-mRNA-1 |
| chr6_1 | CDS | 54170829 | 54170899 | 54170829 | ID=Msa0888800-mRNA-1:cds;Parent=Msa0888800-mRNA-1 |
| chr6_1 | CDS | 54170988 | 54171075 | 54170988 | ID=Msa0888800-mRNA-1:cds;Parent=Msa0888800-mRNA-1 |
| chr6_1 | CDS | 54173467 | 54173532 | 54173467 | ID=Msa0888800-mRNA-1:cds;Parent=Msa0888800-mRNA-1 |
| chr6_1 | CDS | 54175124 | 54175181 | 54175124 | ID=Msa0888800-mRNA-1:cds;Parent=Msa0888800-mRNA-1 |
| chr6_1 | CDS | 54175275 | 54175387 | 54175275 | ID=Msa0888800-mRNA-1:cds;Parent=Msa0888800-mRNA-1 |
| chr6_1 | CDS | 54175826 | 54176179 | 54175826 | ID=Msa0888800-mRNA-1:cds;Parent=Msa0888800-mRNA-1 |
| chr6_1 | three_prime_UTR | 54176180 | 54176454 | 54176180 | ID=Msa0888800-mRNA-1:three_prime_utr;Parent=Msa0888800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
