AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0915530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0915530 MtrunA17_Chr6g0470551 74.224 322 12 3 1 276 1 297 2.50e-153 429
Msa0915530 MtrunA17_Chr4g0066531 40.865 208 80 4 103 276 100 298 1.21e-43 150
Msa0915530 MtrunA17_Chr6g0452281 38.806 201 95 4 102 276 113 311 8.05e-43 148
Msa0915530 MtrunA17_Chr2g0286811 38.537 205 91 4 103 276 103 303 4.40e-39 138
Msa0915530 MtrunA17_Chr3g0143381 32.867 143 69 3 103 218 132 274 8.94e-17 78.2
Msa0915530 MtrunA17_Chr8g0371241 32.283 127 75 4 102 217 30 156 1.15e-15 73.2
Msa0915530 MtrunA17_Chr8g0371281 31.250 144 72 3 103 219 129 272 1.52e-15 74.7
Msa0915530 MtrunA17_Chr5g0406051 30.282 142 72 3 103 217 141 282 4.65e-15 73.6
Msa0915530 MtrunA17_Chr3g0143361 30.216 139 76 2 103 220 32 170 5.91e-15 71.6
Msa0915530 MtrunA17_Chr1g0213811 33.824 136 65 4 105 217 142 275 8.14e-15 72.8
Msa0915530 MtrunA17_Chr8g0371251 31.034 145 73 3 102 219 130 274 1.02e-14 72.4
Msa0915530 MtrunA17_Chr8g0371221 31.690 142 70 3 103 217 130 271 2.18e-14 71.6
Msa0915530 MtrunA17_Chr8g0371231 28.169 142 75 3 103 217 55 196 1.69e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0915530 AT4G25600.1 36.913 298 148 8 6 276 7 291 2.96e-51 170
Msa0915530 AT4G25600.2 43.299 194 83 3 103 276 53 239 2.35e-50 166
Msa0915530 AT4G25600.4 43.299 194 83 3 103 276 41 227 2.72e-50 165
Msa0915530 AT4G25600.3 43.299 194 83 3 103 276 44 230 2.79e-50 165
Msa0915530 AT3G28490.1 39.303 201 89 3 102 276 95 288 2.07e-45 155
Msa0915530 AT3G28480.2 36.667 210 103 3 93 276 117 322 1.69e-43 150
Msa0915530 AT3G28480.1 37.313 201 96 3 102 276 118 314 4.26e-43 149
Msa0915530 AT3G06300.1 39.901 203 89 5 103 276 101 299 2.12e-41 144
Msa0915530 AT5G18900.1 36.946 203 95 4 103 276 100 298 3.25e-37 134
Msa0915530 AT4G35810.1 32.192 146 72 3 102 220 142 287 3.92e-16 77.0
Msa0915530 AT4G35810.2 32.192 146 72 3 102 220 142 287 3.92e-16 77.0
Msa0915530 AT2G17720.1 31.724 145 72 3 102 219 142 286 1.17e-15 75.9
Msa0915530 AT1G20270.1 29.861 144 74 3 103 219 139 282 5.75e-15 73.6
Msa0915530 AT5G66060.1 29.577 142 73 3 103 217 141 282 1.94e-13 69.3
Msa0915530 AT2G43080.1 28.571 140 79 3 105 223 144 283 3.64e-12 65.5

Find 65 sgRNAs with CRISPR-Local

Find 392 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGACCACATATCGCCTTTA+AGG 0.151018 6_2:-31953692 None:intergenic
CCTTTACAGGTCATGCATTA+TGG 0.184280 6_2:+31953015 Msa0915530:CDS
TTTCACAAACAAAACCAAAT+TGG 0.191233 6_2:+31953068 Msa0915530:CDS
GCTCGATGCCCTGTCCTTAA+AGG 0.210672 6_2:+31953678 Msa0915530:CDS
TCTTGTCAGGAGATGTATTT+AGG 0.219035 6_2:-31953644 None:intergenic
AGAGAACAGCAAGCCTTTAC+AGG 0.299865 6_2:+31953002 Msa0915530:intron
CTTTACAGGTCATGCATTAT+GGG 0.305434 6_2:+31953016 Msa0915530:CDS
AGTGGCCTACATTAAGTAAA+TGG 0.331369 6_2:-31951690 None:intergenic
AGAACTGCATTCCCTTTAAC+TGG 0.334718 6_2:-31953606 None:intergenic
AGAGGAAACTTCATTGGATA+TGG 0.342638 6_2:+31951430 Msa0915530:CDS
TTCACAAACAAAACCAAATT+GGG 0.356049 6_2:+31953069 Msa0915530:CDS
AGGTCCGGTTGATCCCAATT+TGG 0.361801 6_2:-31953082 None:intergenic
AAAGAAAGAGGAAACTTCAT+TGG 0.368859 6_2:+31951424 Msa0915530:CDS
TTAGCAGCAGGAAAGAATTA+AGG 0.376685 6_2:+31948914 Msa0915530:intron
GAGGTTCTCCAACCAGTTAA+AGG 0.393818 6_2:+31953594 Msa0915530:CDS
TTGAAGAAAGACTTTCGGTT+TGG 0.401961 6_2:+31952872 Msa0915530:CDS
AAAACCAAATTGGGATCAAC+CGG 0.420089 6_2:+31953078 Msa0915530:CDS
GTTGGATCTCCTGATTACTA+TGG 0.429222 6_2:+31953855 Msa0915530:CDS
CGACAAGTACCATAGTAATC+AGG 0.442588 6_2:-31953864 None:intergenic
TAGAAGCGAGAGGGTGAAGA+AGG 0.445042 6_2:-31948790 None:intergenic
GAGGATTGAAGAAAGACTTT+CGG 0.449118 6_2:+31952867 Msa0915530:CDS
GTGAATTAACTGATATTCTC+AGG 0.462191 6_2:+31953986 Msa0915530:three_prime_UTR
TCTCCCGTTGCTGCCCAAGC+TGG 0.465114 6_2:-31953807 None:intergenic
CTGCATTCCCTTTAACTGGT+TGG 0.472708 6_2:-31953602 None:intergenic
AAGAAGGTGTTAGAAGCGAG+AGG 0.473143 6_2:-31948800 None:intergenic
AGATGATAGTTGTCCAGCTT+GGG 0.474954 6_2:+31953794 Msa0915530:CDS
CACTGTTGCCATCAAAGGTC+CGG 0.475147 6_2:-31953097 None:intergenic
TGTCCAGCTTGGGCAGCAAC+GGG 0.476542 6_2:+31953804 Msa0915530:CDS
GCGTGTAAGCTACTCTTGTC+AGG 0.476850 6_2:-31953657 None:intergenic
AGGTTCTCCAACCAGTTAAA+GGG 0.477047 6_2:+31953595 Msa0915530:CDS
CCATAATGCATGACCTGTAA+AGG 0.487176 6_2:-31953015 None:intergenic
AAGATGATAGTTGTCCAGCT+TGG 0.488359 6_2:+31953793 Msa0915530:CDS
CGGAACCCTGTCTACATGGT+TGG 0.491604 6_2:+31953837 Msa0915530:CDS
ATTTGACCAGCTGCTACTCT+TGG 0.492285 6_2:-31953556 None:intergenic
GGAGATCCAACCATGTAGAC+AGG 0.498626 6_2:-31953843 None:intergenic
AGAGGGTGAAGAAGGTGATG+AGG 0.510106 6_2:-31948782 None:intergenic
TAACACCTTCTTTCTCCGAC+AGG 0.514033 6_2:+31948811 Msa0915530:CDS
TTGTCCAGCTTGGGCAGCAA+CGG 0.515020 6_2:+31953803 Msa0915530:CDS
CACATATCGCCTTTAAGGAC+AGG 0.515314 6_2:-31953687 None:intergenic
AATTACCTGTCGGAGAAAGA+AGG 0.515809 6_2:-31948816 None:intergenic
ATATATTGCCTAGTTAATTG+AGG 0.520821 6_2:-31954033 None:intergenic
ATTCTGAGCTGCATATCAAA+AGG 0.526949 6_2:+31954124 Msa0915530:three_prime_UTR
CTGATTACTATGGTACTTGT+CGG 0.527249 6_2:+31953865 Msa0915530:CDS
TCAACGGAACCCTGTCTACA+TGG 0.530423 6_2:+31953833 Msa0915530:CDS
CATTCAGAAATCTGTCACAT+TGG 0.537495 6_2:-31951660 None:intergenic
TGGTGGCTATTCAAAGAAAG+AGG 0.553698 6_2:+31951412 Msa0915530:CDS
AGAATCACTGTTGCCATCAA+AGG 0.553753 6_2:-31953102 None:intergenic
GAAGAAGGTGATGAGGAGAA+AGG 0.556142 6_2:-31948775 None:intergenic
AGAAGGTGTTAGAAGCGAGA+GGG 0.558813 6_2:-31948799 None:intergenic
AATGCATGCTGATGAGAAGT+TGG 0.573489 6_2:+31953897 Msa0915530:exon
ATGATGTTCCTCAATTAACT+AGG 0.580542 6_2:+31954025 Msa0915530:three_prime_UTR
CACAGACCAAGAGTAGCAGC+TGG 0.591686 6_2:+31953550 Msa0915530:intron
TGTACATTTCTCAAAAGCAA+AGG 0.603530 6_2:-31954062 None:intergenic
CTGTCCTTAAAGGCGATATG+TGG 0.609635 6_2:+31953688 Msa0915530:CDS
TATACAAGATCGATCAGTGG+AGG 0.618199 6_2:+31953729 Msa0915530:CDS
AGGGAAAGTCTCAACTACGC+TGG 0.624281 6_2:+31953749 Msa0915530:CDS
TTTAGGATGATATTGTCAAG+AGG 0.632824 6_2:+31952848 Msa0915530:intron
ACTTCAAGAAAACTTACTGT+AGG 0.640786 6_2:+31951637 Msa0915530:CDS
ATACAAGATCGATCAGTGGA+GGG 0.641541 6_2:+31953730 Msa0915530:CDS
CAGCAACGGGAGAATGTCAA+CGG 0.647505 6_2:+31953817 Msa0915530:CDS
TTCTATACAAGATCGATCAG+TGG 0.652183 6_2:+31953726 Msa0915530:CDS
GAGATCCAACCATGTAGACA+GGG 0.668526 6_2:-31953842 None:intergenic
ACATATCGCCTTTAAGGACA+GGG 0.680203 6_2:-31953686 None:intergenic
TTGAAGAAGAAGAATCACGG+TGG 0.754864 6_2:-31948733 None:intergenic
AAATTGTAGAAATAACAGTG+AGG 0.789611 6_2:+31953575 Msa0915530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATATATATAATAATAA+AGG - chr6_2:31949073-31949092 None:intergenic 0.0%
!! TATAATAATAAAGGAATAAA+GGG - chr6_2:31949064-31949083 None:intergenic 10.0%
!! ATATAATAATAAAGGAATAA+AGG - chr6_2:31949065-31949084 None:intergenic 10.0%
!! AATATTATTATTATTATGAG+CGG + chr6_2:31949184-31949203 Msa0915530:intron 10.0%
!! TTTAATTATATTATAAGTAG+AGG + chr6_2:31951163-31951182 Msa0915530:intron 10.0%
!! TTAATTATATTATAAGTAGA+GGG + chr6_2:31951164-31951183 Msa0915530:intron 10.0%
!!! TTTTAAATTACAGAAAATTA+TGG - chr6_2:31952645-31952664 None:intergenic 10.0%
!! TAATAATTAGAGTGAAATTA+GGG - chr6_2:31948861-31948880 None:intergenic 15.0%
!! ATAATAATTAGAGTGAAATT+AGG - chr6_2:31948862-31948881 None:intergenic 15.0%
!!! ATTTTTCTATTAGTTTGTTA+TGG + chr6_2:31949253-31949272 Msa0915530:intron 15.0%
!!! TTTTTCTATTAGTTTGTTAT+GGG + chr6_2:31949254-31949273 Msa0915530:intron 15.0%
!!! TTTTAAATTTGAGATAATAG+TGG + chr6_2:31949323-31949342 Msa0915530:intron 15.0%
!! TATGTTCATTAAAGATATAT+CGG - chr6_2:31950950-31950969 None:intergenic 15.0%
!! ATCAATGTAAAACTAATTTA+TGG + chr6_2:31951099-31951118 Msa0915530:intron 15.0%
!! TAATTATATTATAAGTAGAG+GGG + chr6_2:31951165-31951184 Msa0915530:intron 15.0%
!! TTATTGTCGAAAATTAATAT+AGG + chr6_2:31952329-31952348 Msa0915530:intron 15.0%
!!! AAATTTGGAATTAACTAATT+AGG - chr6_2:31952428-31952447 None:intergenic 15.0%
!!! GTAATTTAAAATATCATAAC+CGG + chr6_2:31952654-31952673 Msa0915530:intron 15.0%
!! AAACGGAAAAAAAAAATTAA+GGG - chr6_2:31953279-31953298 None:intergenic 15.0%
!!! TAAATTACACTGTTATTTTT+AGG - chr6_2:31953478-31953497 None:intergenic 15.0%
!! TAAAAATAACAGTGTAATTT+AGG + chr6_2:31953477-31953496 Msa0915530:intron 15.0%
!!! TTTTTTTTAAACTCGGTATT+CGG + chr6_2:31949090-31949109 Msa0915530:intron 20.0%
!!! AATAATATTGAGCTATGTTT+TGG - chr6_2:31949173-31949192 None:intergenic 20.0%
!! AATAAATGTTCATTTCCATT+TGG + chr6_2:31949289-31949308 Msa0915530:intron 20.0%
!!! AATGATATGGTATAGATTTT+TGG + chr6_2:31949433-31949452 Msa0915530:intron 20.0%
!! TTGAAAATTTGCATATGTAA+TGG - chr6_2:31949968-31949987 None:intergenic 20.0%
!! AGTTGTTTATTAGTAGAATT+CGG + chr6_2:31950065-31950084 Msa0915530:intron 20.0%
!!! GTATATTTAAAATGACGATA+TGG - chr6_2:31951031-31951050 None:intergenic 20.0%
!! TAAATATACAGTTACAAATG+TGG + chr6_2:31951042-31951061 Msa0915530:intron 20.0%
!! AAATATACAGTTACAAATGT+GGG + chr6_2:31951043-31951062 Msa0915530:intron 20.0%
!! TTGAAAGTCTTAAATAGAAA+TGG - chr6_2:31951207-31951226 None:intergenic 20.0%
!! ATAAGTATAGAAAAAAGTTC+AGG - chr6_2:31951463-31951482 None:intergenic 20.0%
!!! TATACTTATTTTGATGAACT+AGG + chr6_2:31951474-31951493 Msa0915530:intron 20.0%
!! ATTTACCATTTACTTAATGT+AGG + chr6_2:31951685-31951704 Msa0915530:intron 20.0%
!!! AAAACTGTTTTCATTATTTC+TGG - chr6_2:31951903-31951922 None:intergenic 20.0%
!!! TTTGACATTTTCATTGTTTA+TGG + chr6_2:31951923-31951942 Msa0915530:intron 20.0%
!!! TCTTCTACATTTTCAAAATT+TGG - chr6_2:31952443-31952462 None:intergenic 20.0%
!! TCATTAGTGTTATAAGTTAT+AGG + chr6_2:31952779-31952798 Msa0915530:intron 20.0%
!! AACGGAAAAAAAAAATTAAG+GGG - chr6_2:31953278-31953297 None:intergenic 20.0%
!! GAAACGGAAAAAAAAAATTA+AGG - chr6_2:31953280-31953299 None:intergenic 20.0%
!! AAGTAACATTTATAACTGAA+GGG - chr6_2:31953311-31953330 None:intergenic 20.0%
!! AAAGTAACATTTATAACTGA+AGG - chr6_2:31953312-31953331 None:intergenic 20.0%
!! TGTGTAATGATTGTAATTTA+AGG + chr6_2:31953414-31953433 Msa0915530:intron 20.0%
!! GTGTAATGATTGTAATTTAA+GGG + chr6_2:31953415-31953434 Msa0915530:intron 20.0%
!! CATAATCAAAAAGAAAACAA+AGG - chr6_2:31953518-31953537 None:intergenic 20.0%
!!! TTTTAATTTGATTGGAGAAT+AGG + chr6_2:31953950-31953969 Msa0915530:three_prime_UTR 20.0%
!!! ATTTTGAAGAAGAAGAATCA+CGG - chr6_2:31948739-31948758 None:intergenic 25.0%
! TGTGTAATTTAATTACCTGT+CGG - chr6_2:31948829-31948848 None:intergenic 25.0%
! TTAATATTTGTATTAGCAGC+AGG + chr6_2:31948902-31948921 Msa0915530:intron 25.0%
!!! CTAACTAACTACATTTTAGT+TGG - chr6_2:31949371-31949390 None:intergenic 25.0%
! CAACTAAAATGTAGTTAGTT+AGG + chr6_2:31949369-31949388 Msa0915530:intron 25.0%
! TTTGGATTGTCTTGATATAA+TGG + chr6_2:31949403-31949422 Msa0915530:intron 25.0%
! TAATGGTTTATGCAATGATA+TGG + chr6_2:31949420-31949439 Msa0915530:intron 25.0%
! TGAGTACAATATCAGATATT+AGG + chr6_2:31949488-31949507 Msa0915530:intron 25.0%
! GAGTACAATATCAGATATTA+GGG + chr6_2:31949489-31949508 Msa0915530:intron 25.0%
! ATTAGGGTTTAGTACTATAT+TGG + chr6_2:31949505-31949524 Msa0915530:intron 25.0%
! TATAAATTACCAATGATTCG+AGG + chr6_2:31950017-31950036 Msa0915530:intron 25.0%
! AGTAGAATTCGGTTATAATT+TGG + chr6_2:31950076-31950095 Msa0915530:intron 25.0%
! GTAGAATTCGGTTATAATTT+GGG + chr6_2:31950077-31950096 Msa0915530:intron 25.0%
! GCGAATGTGTTTATAAATTA+GGG - chr6_2:31950150-31950169 None:intergenic 25.0%
! TGCGAATGTGTTTATAAATT+AGG - chr6_2:31950151-31950170 None:intergenic 25.0%
! TCTGACATTTGATGAAAATA+TGG - chr6_2:31950176-31950195 None:intergenic 25.0%
!! TGATTCTGGATAAACATTTT+TGG + chr6_2:31950276-31950295 Msa0915530:intron 25.0%
!! GATTCTGGATAAACATTTTT+GGG + chr6_2:31950277-31950296 Msa0915530:intron 25.0%
! AAACAATGTGGTTATAAGTT+GGG - chr6_2:31950383-31950402 None:intergenic 25.0%
! TTTGGAAGAACTTATGAATA+AGG - chr6_2:31950569-31950588 None:intergenic 25.0%
! TGCAACATACCAAATAAATA+AGG - chr6_2:31950866-31950885 None:intergenic 25.0%
! TTCATTAAAGATATATCGGA+TGG - chr6_2:31950946-31950965 None:intergenic 25.0%
!! GTCAGTGTAAATTAGTTTAA+TGG + chr6_2:31950974-31950993 Msa0915530:intron 25.0%
!! ATTAGTTTAATGGACATTCA+AGG + chr6_2:31950984-31951003 Msa0915530:intron 25.0%
!! TTAGTTTAATGGACATTCAA+GGG + chr6_2:31950985-31951004 Msa0915530:intron 25.0%
! AATATACAGTTACAAATGTG+GGG + chr6_2:31951044-31951063 Msa0915530:intron 25.0%
!!! TGAGTTTTTTTTGCAATTCT+TGG + chr6_2:31951251-31951270 Msa0915530:intron 25.0%
!! GTTTGCATTGTGAAAATTTT+CGG + chr6_2:31951543-31951562 Msa0915530:intron 25.0%
!! TATTAGCTTATTCTTTGTGT+AGG + chr6_2:31951612-31951631 Msa0915530:intron 25.0%
! CTTCAAGAATAACTTAATGT+AGG + chr6_2:31951723-31951742 Msa0915530:intron 25.0%
! TCAGATATAAACCATTCTTA+GGG + chr6_2:31951752-31951771 Msa0915530:intron 25.0%
!! TATGTTTTCACAAAGTAAAC+AGG + chr6_2:31952036-31952055 Msa0915530:intron 25.0%
! AACAAGAACATGTAACATAA+TGG - chr6_2:31952220-31952239 None:intergenic 25.0%
! TTATAGGACAGAAATATTGA+AGG - chr6_2:31952250-31952269 None:intergenic 25.0%
! AGCAGAAAGATATTGAAAAA+CGG + chr6_2:31952536-31952555 Msa0915530:intron 25.0%
! TAACACTAATGAATTGTTCA+TGG - chr6_2:31952771-31952790 None:intergenic 25.0%
! TTGTAGACATTATTATGATG+AGG + chr6_2:31952809-31952828 Msa0915530:intron 25.0%
! TTGATCAAATAGATACCTTT+AGG - chr6_2:31952907-31952926 None:intergenic 25.0%
! TTTCACAAACAAAACCAAAT+TGG + chr6_2:31953068-31953087 Msa0915530:CDS 25.0%
! TTCACAAACAAAACCAAATT+GGG + chr6_2:31953069-31953088 Msa0915530:CDS 25.0%
!! TTGCGTACTATTTATCTTTT+AGG + chr6_2:31953204-31953223 Msa0915530:intron 25.0%
! TTTAGGCTAAATTAAACCTT+TGG + chr6_2:31953221-31953240 Msa0915530:intron 25.0%
! GAAACCTAAAAATGACTTAA+GGG - chr6_2:31953248-31953267 None:intergenic 25.0%
! TGAAACCTAAAAATGACTTA+AGG - chr6_2:31953249-31953268 None:intergenic 25.0%
! ATTACAATCATTACACACTT+TGG - chr6_2:31953411-31953430 None:intergenic 25.0%
!! CAAGTTTTTACGTTTCATTT+TGG - chr6_2:31953442-31953461 None:intergenic 25.0%
! CAAAATGAAACGTAAAAACT+TGG + chr6_2:31953440-31953459 Msa0915530:intron 25.0%
!!! GTTATTTTTAGGTTTCACTT+TGG - chr6_2:31953467-31953486 None:intergenic 25.0%
!! TAATTTAGGATATCTTGTTC+TGG + chr6_2:31953491-31953510 Msa0915530:intron 25.0%
! AAATTGTAGAAATAACAGTG+AGG + chr6_2:31953575-31953594 Msa0915530:CDS 25.0%
!!! TTTGCACAAATTTTTTTACG+TGG + chr6_2:31953921-31953940 Msa0915530:three_prime_UTR 25.0%
!!! GGTTGCTTTTTTAATTTGAT+TGG + chr6_2:31953942-31953961 Msa0915530:three_prime_UTR 25.0%
! ATATATTGCCTAGTTAATTG+AGG - chr6_2:31954036-31954055 None:intergenic 25.0%
ATTAGAGTGAAATTAGGGAA+GGG - chr6_2:31948856-31948875 None:intergenic 30.0%
AATTAGAGTGAAATTAGGGA+AGG - chr6_2:31948857-31948876 None:intergenic 30.0%
GATTGAACCATCAAATTAGT+CGG - chr6_2:31949120-31949139 None:intergenic 30.0%
!!! AGCTATGTTTTGGCTTTAAA+TGG - chr6_2:31949163-31949182 None:intergenic 30.0%
TATTATTATGAGCGGAAAGA+TGG + chr6_2:31949192-31949211 Msa0915530:intron 30.0%
AAAACTAAATCTACGCCAAA+TGG - chr6_2:31949307-31949326 None:intergenic 30.0%
CTAAAATGTAGTTAGTTAGG+TGG + chr6_2:31949372-31949391 Msa0915530:intron 30.0%
GGCAAAATGATGAATCTATA+AGG + chr6_2:31949795-31949814 Msa0915530:intron 30.0%
GGTTGATTGTTCATATAAGT+AGG + chr6_2:31949816-31949835 Msa0915530:intron 30.0%
! TTAAGTTGTTTATCCAAGCA+TGG - chr6_2:31950043-31950062 None:intergenic 30.0%
TTGACTCTGACTTACAAAAT+TGG + chr6_2:31950106-31950125 Msa0915530:intron 30.0%
ATGTTTATCCAGAATCAGTT+GGG - chr6_2:31950273-31950292 None:intergenic 30.0%
AATGTTTATCCAGAATCAGT+TGG - chr6_2:31950274-31950293 None:intergenic 30.0%
AGATCTAGGTATTAGAAACT+TGG + chr6_2:31950303-31950322 Msa0915530:intron 30.0%
GATCTAGGTATTAGAAACTT+GGG + chr6_2:31950304-31950323 Msa0915530:intron 30.0%
CAAACAATGTGGTTATAAGT+TGG - chr6_2:31950384-31950403 None:intergenic 30.0%
CAACTTATAACCACATTGTT+TGG + chr6_2:31950382-31950401 Msa0915530:intron 30.0%
TAAAATATGGCCAAACAATG+TGG - chr6_2:31950395-31950414 None:intergenic 30.0%
GTCCAACATTGGATAAAATA+TGG - chr6_2:31950408-31950427 None:intergenic 30.0%
ATTTACATAGCTCTCAATGA+TGG - chr6_2:31950527-31950546 None:intergenic 30.0%
TCATAAGTTCTTCCAAATTG+TGG + chr6_2:31950572-31950591 Msa0915530:intron 30.0%
CTATGCAACAACTACTATTA+AGG - chr6_2:31950662-31950681 None:intergenic 30.0%
GAATCAACTAGCTGTAAAAA+GGG - chr6_2:31950743-31950762 None:intergenic 30.0%
AGAATCAACTAGCTGTAAAA+AGG - chr6_2:31950744-31950763 None:intergenic 30.0%
! TTTGTACAAAGGCTTTTTGT+CGG + chr6_2:31950824-31950843 Msa0915530:intron 30.0%
! GTGTGACTACCTTATTTATT+TGG + chr6_2:31950854-31950873 Msa0915530:intron 30.0%
ATATGGCATGGAAAAATGAA+GGG - chr6_2:31951014-31951033 None:intergenic 30.0%
! TTTAAAATGACGATATGGCA+TGG - chr6_2:31951026-31951045 None:intergenic 30.0%
TGATGAAGTGAATGATGTAA+AGG - chr6_2:31951137-31951156 None:intergenic 30.0%
!!! TTACTCTATTGTTTTTGCCA+AGG + chr6_2:31951367-31951386 Msa0915530:intron 30.0%
CAAGAAAAATCATCTGGAAA+TGG + chr6_2:31951392-31951411 Msa0915530:CDS 30.0%
AAAGAAAGAGGAAACTTCAT+TGG + chr6_2:31951424-31951443 Msa0915530:CDS 30.0%
! AATAGACAAGATTTTCCCAT+CGG - chr6_2:31951596-31951615 None:intergenic 30.0%
ACTTCAAGAAAACTTACTGT+AGG + chr6_2:31951637-31951656 Msa0915530:CDS 30.0%
GTCAGATATAAACCATTCTT+AGG + chr6_2:31951751-31951770 Msa0915530:intron 30.0%
ACAACGTTTCACAAAGTAAA+CGG - chr6_2:31951779-31951798 None:intergenic 30.0%
! TTTGAAGTGAATCATTGTGA+TGG + chr6_2:31951844-31951863 Msa0915530:intron 30.0%
!! TTTTACTTGTTAACAAGCAC+AGG - chr6_2:31951984-31952003 None:intergenic 30.0%
TATGGTTGATTGAGTGTTAT+AGG - chr6_2:31952266-31952285 None:intergenic 30.0%
ACATTTACTTGCAAAACACT+TGG - chr6_2:31952298-31952317 None:intergenic 30.0%
! AAATTGCCAGGCTTTAATAT+GGG + chr6_2:31952367-31952386 Msa0915530:intron 30.0%
TAATTAGTGTCCAAAGTTCA+GGG - chr6_2:31952405-31952424 None:intergenic 30.0%
GCAACTACTCATATATTTGT+AGG + chr6_2:31952476-31952495 Msa0915530:intron 30.0%
CAGAAAATTATGGCCAAATA+TGG - chr6_2:31952635-31952654 None:intergenic 30.0%
! TATAGTGATAATGATGTCCA+GGG - chr6_2:31952704-31952723 None:intergenic 30.0%
AACAAGTAATTGCAACATGT+TGG - chr6_2:31952728-31952747 None:intergenic 30.0%
TAATGAATTGTTCATGGTCA+AGG - chr6_2:31952765-31952784 None:intergenic 30.0%
! TTTAGGATGATATTGTCAAG+AGG + chr6_2:31952848-31952867 Msa0915530:intron 30.0%
!!! GCTTTTAGAATTTGTATCAC+AGG - chr6_2:31952946-31952965 None:intergenic 30.0%
ATTATGGGCTTGAAAAAGAT+AGG + chr6_2:31953031-31953050 Msa0915530:CDS 30.0%
GTGAATTAACTGATATTCTC+AGG + chr6_2:31953986-31954005 Msa0915530:three_prime_UTR 30.0%
ATGATGTTCCTCAATTAACT+AGG + chr6_2:31954025-31954044 Msa0915530:three_prime_UTR 30.0%
TGTACATTTCTCAAAAGCAA+AGG - chr6_2:31954065-31954084 None:intergenic 30.0%
TTAGCAGCAGGAAAGAATTA+AGG + chr6_2:31948914-31948933 Msa0915530:intron 35.0%
AAATGTAGTTAGTTAGGTGG+TGG + chr6_2:31949375-31949394 Msa0915530:intron 35.0%
CACAGCAAGTACATGTAAAA+TGG - chr6_2:31949470-31949489 None:intergenic 35.0%
TGGTATTTATAGCCCTTTGT+GGG + chr6_2:31949554-31949573 Msa0915530:intron 35.0%
GACCGTTAATATATTCCCAA+GGG - chr6_2:31949744-31949763 None:intergenic 35.0%
!!! ACATTTTTGGGTTGAGATCT+AGG + chr6_2:31950289-31950308 Msa0915530:intron 35.0%
TAGGTATTAGAAACTTGGGT+TGG + chr6_2:31950308-31950327 Msa0915530:intron 35.0%
AGGTATTAGAAACTTGGGTT+GGG + chr6_2:31950309-31950328 Msa0915530:intron 35.0%
TATAAGGCTGAGTAAGAGTT+AGG - chr6_2:31950335-31950354 None:intergenic 35.0%
!! ACCTCAAAGTCGGTTTTATA+AGG - chr6_2:31950351-31950370 None:intergenic 35.0%
! GGCCATATTTTATCCAATGT+TGG + chr6_2:31950403-31950422 Msa0915530:intron 35.0%
!! TTTCTTGTTCCTTTTGCTGT+AGG + chr6_2:31950796-31950815 Msa0915530:intron 35.0%
!! TTCTTGTTCCTTTTGCTGTA+GGG + chr6_2:31950797-31950816 Msa0915530:intron 35.0%
! TGTAGGGTCTTTTTGTACAA+AGG + chr6_2:31950813-31950832 Msa0915530:intron 35.0%
GATATGGCATGGAAAAATGA+AGG - chr6_2:31951015-31951034 None:intergenic 35.0%
ACATCATTCACTTCATCACT+TGG + chr6_2:31951139-31951158 Msa0915530:intron 35.0%
! AGATGATTTTTCTTGTGCCT+TGG - chr6_2:31951387-31951406 None:intergenic 35.0%
AAGGCACAAGAAAAATCATC+TGG + chr6_2:31951386-31951405 Msa0915530:intron 35.0%
GAAAAATCATCTGGAAATGG+TGG + chr6_2:31951395-31951414 Msa0915530:CDS 35.0%
AGAGGAAACTTCATTGGATA+TGG + chr6_2:31951430-31951449 Msa0915530:CDS 35.0%
GAACTAGGCACTAGTAAATT+AGG + chr6_2:31951489-31951508 Msa0915530:intron 35.0%
! TTGTTCATTGTTTTCACCGA+TGG + chr6_2:31951577-31951596 Msa0915530:intron 35.0%
! TGTTCATTGTTTTCACCGAT+GGG + chr6_2:31951578-31951597 Msa0915530:intron 35.0%
CATTCAGAAATCTGTCACAT+TGG - chr6_2:31951663-31951682 None:intergenic 35.0%
AGTGGCCTACATTAAGTAAA+TGG - chr6_2:31951693-31951712 None:intergenic 35.0%
TCTTGAAGTTATTCTGACAG+TGG - chr6_2:31951711-31951730 None:intergenic 35.0%
GAATGGTTTATATCTGACAG+TGG - chr6_2:31951749-31951768 None:intergenic 35.0%
AAGAACAAGCTAAACCTATG+AGG - chr6_2:31952075-31952094 None:intergenic 35.0%
!! ACATGTACTGATTGTGTCTT+AGG + chr6_2:31952125-31952144 Msa0915530:intron 35.0%
!! AGGTTGACTTGGTTCTTAAT+TGG + chr6_2:31952145-31952164 Msa0915530:intron 35.0%
ATCAATAACTATTGACCGCT+TGG - chr6_2:31952189-31952208 None:intergenic 35.0%
AACACTTGGCTTACAAGTTA+TGG - chr6_2:31952284-31952303 None:intergenic 35.0%
ACTTGTAAAAGCAAATTGCC+AGG + chr6_2:31952355-31952374 Msa0915530:intron 35.0%
! CAAATTGCCAGGCTTTAATA+TGG + chr6_2:31952366-31952385 Msa0915530:intron 35.0%
GTAATTAGTGTCCAAAGTTC+AGG - chr6_2:31952406-31952425 None:intergenic 35.0%
! ATAGTGATAATGATGTCCAG+GGG - chr6_2:31952703-31952722 None:intergenic 35.0%
! CTATAGTGATAATGATGTCC+AGG - chr6_2:31952705-31952724 None:intergenic 35.0%
! GTTCTACACTGTTCTGTTTT+AGG + chr6_2:31952831-31952850 Msa0915530:intron 35.0%
GAGGATTGAAGAAAGACTTT+CGG + chr6_2:31952867-31952886 Msa0915530:CDS 35.0%
TTGAAGAAAGACTTTCGGTT+TGG + chr6_2:31952872-31952891 Msa0915530:CDS 35.0%
! GTTTGGACTTTTCTTCCTAA+AGG + chr6_2:31952889-31952908 Msa0915530:CDS 35.0%
TTTGTATCACAGGCAAATAC+TGG - chr6_2:31952936-31952955 None:intergenic 35.0%
CTTTACAGGTCATGCATTAT+GGG + chr6_2:31953016-31953035 Msa0915530:CDS 35.0%
AAAACCAAATTGGGATCAAC+CGG + chr6_2:31953078-31953097 Msa0915530:CDS 35.0%
AAAATGACTTAAGGGACCAA+AGG - chr6_2:31953240-31953259 None:intergenic 35.0%
!!! TGGTCCCTTAAGTCATTTTT+AGG + chr6_2:31953241-31953260 Msa0915530:intron 35.0%
CTGAAGGGACTAAAATGAAA+CGG - chr6_2:31953296-31953315 None:intergenic 35.0%
! CATTTTTCATTCGAGTCCAT+AGG + chr6_2:31953344-31953363 Msa0915530:intron 35.0%
AGTTCGTCAAATGTTTCCTA+TGG - chr6_2:31953363-31953382 None:intergenic 35.0%
TCTTGTCAGGAGATGTATTT+AGG - chr6_2:31953647-31953666 None:intergenic 35.0%
TTCTATACAAGATCGATCAG+TGG + chr6_2:31953726-31953745 Msa0915530:CDS 35.0%
CTGATTACTATGGTACTTGT+CGG + chr6_2:31953865-31953884 Msa0915530:CDS 35.0%
ATTCTGAGCTGCATATCAAA+AGG + chr6_2:31954124-31954143 Msa0915530:three_prime_UTR 35.0%
TTGAAGAAGAAGAATCACGG+TGG - chr6_2:31948736-31948755 None:intergenic 40.0%
AATTACCTGTCGGAGAAAGA+AGG - chr6_2:31948819-31948838 None:intergenic 40.0%
!! TTGAAGAAAGTACCTGACCT+TGG - chr6_2:31949033-31949052 None:intergenic 40.0%
! AGTTAGGTGGTGGTTAACTT+TGG + chr6_2:31949385-31949404 Msa0915530:intron 40.0%
CACTCTTGGAATCATTCTCA+AGG - chr6_2:31949536-31949555 None:intergenic 40.0%
CTTGAGAATGATTCCAAGAG+TGG + chr6_2:31949534-31949553 Msa0915530:intron 40.0%
AGGGCTATAAATACCACTCT+TGG - chr6_2:31949550-31949569 None:intergenic 40.0%
GTGGTATTTATAGCCCTTTG+TGG + chr6_2:31949553-31949572 Msa0915530:intron 40.0%
!! TTCTAGAAGCATCTAGAAGC+AGG - chr6_2:31949632-31949651 None:intergenic 40.0%
! ATGCTTCTAGAAGCTGACTA+AGG + chr6_2:31949640-31949659 Msa0915530:intron 40.0%
GGCCCTTGGGAATATATTAA+CGG + chr6_2:31949739-31949758 Msa0915530:intron 40.0%
GGACCGTTAATATATTCCCA+AGG - chr6_2:31949745-31949764 None:intergenic 40.0%
! GCCTTATAAAACCGACTTTG+AGG + chr6_2:31950347-31950366 Msa0915530:intron 40.0%
!! TAAAACCGACTTTGAGGTGA+AGG + chr6_2:31950353-31950372 Msa0915530:intron 40.0%
GAAAACCTTCACCTCAAAGT+CGG - chr6_2:31950361-31950380 None:intergenic 40.0%
AAGTGCTAAGAGTCCAACAT+TGG - chr6_2:31950419-31950438 None:intergenic 40.0%
TCATTGCTGCAACCACAATT+TGG - chr6_2:31950587-31950606 None:intergenic 40.0%
! GCTTCGTGATTCTTGATAGT+GGG + chr6_2:31950615-31950634 Msa0915530:intron 40.0%
!! CTTCGTGATTCTTGATAGTG+GGG + chr6_2:31950616-31950635 Msa0915530:intron 40.0%
CAAAAAGACCCTACAGCAAA+AGG - chr6_2:31950808-31950827 None:intergenic 40.0%
! CAAAGGCTTTTTGTCGGATA+AGG + chr6_2:31950830-31950849 Msa0915530:intron 40.0%
TTGGTATGTTGCAGTCTCAT+TGG + chr6_2:31950873-31950892 Msa0915530:intron 40.0%
! ATGTTGCAGTCTCATTGGTT+TGG + chr6_2:31950878-31950897 Msa0915530:intron 40.0%
TGGTGGCTATTCAAAGAAAG+AGG + chr6_2:31951412-31951431 Msa0915530:CDS 40.0%
AAGTAAACGGACCCTAAGAA+TGG - chr6_2:31951766-31951785 None:intergenic 40.0%
!! GATTGTGTCTTAGGTTGACT+TGG + chr6_2:31952134-31952153 Msa0915530:intron 40.0%
TATTGACCGCTTGGTAGAAA+AGG - chr6_2:31952180-31952199 None:intergenic 40.0%
! CCAGGCTTTAATATGGGATT+GGG + chr6_2:31952373-31952392 Msa0915530:intron 40.0%
TGGGAAAAAACCCTGAACTT+TGG + chr6_2:31952392-31952411 Msa0915530:intron 40.0%
CCATAATGCATGACCTGTAA+AGG - chr6_2:31953018-31953037 None:intergenic 40.0%
CCTTTACAGGTCATGCATTA+TGG + chr6_2:31953015-31953034 Msa0915530:CDS 40.0%
ATGGGCTTGAAAAAGATAGG+CGG + chr6_2:31953034-31953053 Msa0915530:CDS 40.0%
AGAATCACTGTTGCCATCAA+AGG - chr6_2:31953105-31953124 None:intergenic 40.0%
ATCTCTCGAATGCTACTCAA+GGG + chr6_2:31953127-31953146 Msa0915530:intron 40.0%
AGGTTCTCCAACCAGTTAAA+GGG + chr6_2:31953595-31953614 Msa0915530:CDS 40.0%
AGAACTGCATTCCCTTTAAC+TGG - chr6_2:31953609-31953628 None:intergenic 40.0%
! ACATATCGCCTTTAAGGACA+GGG - chr6_2:31953689-31953708 None:intergenic 40.0%
TATACAAGATCGATCAGTGG+AGG + chr6_2:31953729-31953748 Msa0915530:CDS 40.0%
ATACAAGATCGATCAGTGGA+GGG + chr6_2:31953730-31953749 Msa0915530:CDS 40.0%
AAGATGATAGTTGTCCAGCT+TGG + chr6_2:31953793-31953812 Msa0915530:CDS 40.0%
AGATGATAGTTGTCCAGCTT+GGG + chr6_2:31953794-31953813 Msa0915530:CDS 40.0%
GTTGGATCTCCTGATTACTA+TGG + chr6_2:31953855-31953874 Msa0915530:CDS 40.0%
CGACAAGTACCATAGTAATC+AGG - chr6_2:31953867-31953886 None:intergenic 40.0%
AATGCATGCTGATGAGAAGT+TGG + chr6_2:31953897-31953916 Msa0915530:exon 40.0%
GAAGAAGGTGATGAGGAGAA+AGG - chr6_2:31948778-31948797 None:intergenic 45.0%
!! AGAAGGTGTTAGAAGCGAGA+GGG - chr6_2:31948802-31948821 None:intergenic 45.0%
!! AAGAAGGTGTTAGAAGCGAG+AGG - chr6_2:31948803-31948822 None:intergenic 45.0%
TAACACCTTCTTTCTCCGAC+AGG + chr6_2:31948811-31948830 Msa0915530:CDS 45.0%
GAGATTTGGACAACACGTGA+AGG - chr6_2:31949003-31949022 None:intergenic 45.0%
CACGTGTTGTCCAAATCTCT+TGG + chr6_2:31949004-31949023 Msa0915530:intron 45.0%
TCCAAATCTCTTGGCAACCA+AGG + chr6_2:31949013-31949032 Msa0915530:intron 45.0%
ACCTTGGTTGCCAAGAGATT+TGG - chr6_2:31949017-31949036 None:intergenic 45.0%
CTTTAAATGGACCCCTCAAG+TGG - chr6_2:31949150-31949169 None:intergenic 45.0%
ATTTATAGCCCTTTGTGGGC+TGG + chr6_2:31949558-31949577 Msa0915530:intron 45.0%
ACTTAAGCTCCAAGCAAGCT+GGG + chr6_2:31949591-31949610 Msa0915530:intron 45.0%
! CTTCTAGAAGCTGACTAAGG+CGG + chr6_2:31949643-31949662 Msa0915530:intron 45.0%
CATAATGGCTCCAAAGGACT+AGG - chr6_2:31949687-31949706 None:intergenic 45.0%
!! CTAGTCCTTTGGAGCCATTA+TGG + chr6_2:31949685-31949704 Msa0915530:intron 45.0%
!! TCCTTTGGAGCCATTATGGA+GGG + chr6_2:31949689-31949708 Msa0915530:intron 45.0%
! GTGCTTTCAGATGCTTGCTA+GGG + chr6_2:31949863-31949882 Msa0915530:intron 45.0%
! TGCTTTCAGATGCTTGCTAG+GGG + chr6_2:31949864-31949883 Msa0915530:intron 45.0%
! TGTGCCTTTAGGAATGCAGA+TGG + chr6_2:31949941-31949960 Msa0915530:intron 45.0%
TGGACCATCTGCATTCCTAA+AGG - chr6_2:31949948-31949967 None:intergenic 45.0%
CAAGAATCACGAAGCGATTG+TGG - chr6_2:31950610-31950629 None:intergenic 45.0%
CGCTTCGTGATTCTTGATAG+TGG + chr6_2:31950614-31950633 Msa0915530:intron 45.0%
GTTACAAATGTGGGGTGATG+TGG + chr6_2:31951052-31951071 Msa0915530:intron 45.0%
GGGGTGATGTGGCAAAATAA+AGG + chr6_2:31951063-31951082 Msa0915530:intron 45.0%
GCTCTTACGTTTCACCTCAT+AGG + chr6_2:31952058-31952077 Msa0915530:intron 45.0%
! GCCAGGCTTTAATATGGGAT+TGG + chr6_2:31952372-31952391 Msa0915530:intron 45.0%
CCCAATCCCATATTAAAGCC+TGG - chr6_2:31952376-31952395 None:intergenic 45.0%
GTGGTTGCATCAGCCATATT+TGG + chr6_2:31952619-31952638 Msa0915530:intron 45.0%
!!! GAGGTTTTAAACTGTGGTCG+CGG - chr6_2:31952681-31952700 None:intergenic 45.0%
ATCACAGGCAAATACTGGTG+TGG - chr6_2:31952931-31952950 None:intergenic 45.0%
AGAGAACAGCAAGCCTTTAC+AGG + chr6_2:31953002-31953021 Msa0915530:intron 45.0%
CATCTCTCGAATGCTACTCA+AGG + chr6_2:31953126-31953145 Msa0915530:intron 45.0%
TCTCTCGAATGCTACTCAAG+GGG + chr6_2:31953128-31953147 Msa0915530:intron 45.0%
AACCCTCTTTCCTGAATCAG+TGG + chr6_2:31953155-31953174 Msa0915530:intron 45.0%
!! CACCACTGATTCAGGAAAGA+GGG - chr6_2:31953160-31953179 None:intergenic 45.0%
!! TCACCACTGATTCAGGAAAG+AGG - chr6_2:31953161-31953180 None:intergenic 45.0%
TCCTGAATCAGTGGTGAGTA+CGG + chr6_2:31953164-31953183 Msa0915530:intron 45.0%
ATTTGACCAGCTGCTACTCT+TGG - chr6_2:31953559-31953578 None:intergenic 45.0%
GAGGTTCTCCAACCAGTTAA+AGG + chr6_2:31953594-31953613 Msa0915530:CDS 45.0%
CTGCATTCCCTTTAACTGGT+TGG - chr6_2:31953605-31953624 None:intergenic 45.0%
! CACATATCGCCTTTAAGGAC+AGG - chr6_2:31953690-31953709 None:intergenic 45.0%
CTGTCCTTAAAGGCGATATG+TGG + chr6_2:31953688-31953707 Msa0915530:CDS 45.0%
CAGACCACATATCGCCTTTA+AGG - chr6_2:31953695-31953714 None:intergenic 45.0%
GAGATCCAACCATGTAGACA+GGG - chr6_2:31953845-31953864 None:intergenic 45.0%
!!! ATATATATTTTTTTTAAACT+CGG + chr6_2:31949083-31949102 Msa0915530:intron 5.0%
AGAGGGTGAAGAAGGTGATG+AGG - chr6_2:31948785-31948804 None:intergenic 50.0%
TAGAAGCGAGAGGGTGAAGA+AGG - chr6_2:31948793-31948812 None:intergenic 50.0%
ATCTCTTGGCAACCAAGGTC+AGG + chr6_2:31949018-31949037 Msa0915530:intron 50.0%
CGGCGAACCGACTAATTTGA+TGG + chr6_2:31949110-31949129 Msa0915530:intron 50.0%
TCAATCTCACCGTCCACTTG+AGG + chr6_2:31949134-31949153 Msa0915530:intron 50.0%
CAATCTCACCGTCCACTTGA+GGG + chr6_2:31949135-31949154 Msa0915530:intron 50.0%
AATCTCACCGTCCACTTGAG+GGG + chr6_2:31949136-31949155 Msa0915530:intron 50.0%
AAATGGACCCCTCAAGTGGA+CGG - chr6_2:31949146-31949165 None:intergenic 50.0%
GACTTAAGCTCCAAGCAAGC+TGG + chr6_2:31949590-31949609 Msa0915530:intron 50.0%
! GATCTAAAGCCCAGCTTGCT+TGG - chr6_2:31949603-31949622 None:intergenic 50.0%
!! GTCCTTTGGAGCCATTATGG+AGG + chr6_2:31949688-31949707 Msa0915530:intron 50.0%
TGTCCCAAGACTCGTGCTTA+GGG - chr6_2:31949774-31949793 None:intergenic 50.0%
TTGTCCCAAGACTCGTGCTT+AGG - chr6_2:31949775-31949794 None:intergenic 50.0%
TAAGCACGAGTCTTGGGACA+AGG + chr6_2:31949774-31949793 Msa0915530:intron 50.0%
CGTGCTTTCAGATGCTTGCT+AGG + chr6_2:31949862-31949881 Msa0915530:intron 50.0%
! GCTTTCAGATGCTTGCTAGG+GGG + chr6_2:31949865-31949884 Msa0915530:intron 50.0%
AAGGCACAGATGCCTCAAGA+AGG - chr6_2:31949929-31949948 None:intergenic 50.0%
! CTTGAGGCATCTGTGCCTTT+AGG + chr6_2:31949930-31949949 Msa0915530:intron 50.0%
CAAGCATGGCCTCGAATCAT+TGG - chr6_2:31950029-31950048 None:intergenic 50.0%
CAATGATTCGAGGCCATGCT+TGG + chr6_2:31950027-31950046 Msa0915530:intron 50.0%
! CCAGAGCCTTTTCTACCAAG+CGG + chr6_2:31952171-31952190 Msa0915530:intron 50.0%
TGTAGGTCCTAACCTGCTCT+CGG + chr6_2:31952493-31952512 Msa0915530:intron 50.0%
ACGGTCTGCAATCGCAATTG+TGG + chr6_2:31952555-31952574 Msa0915530:intron 50.0%
TGCAATCGCAATTGTGGCTG+CGG + chr6_2:31952561-31952580 Msa0915530:intron 50.0%
TTTCCGTGACTGTGTCAGTG+TGG + chr6_2:31952600-31952619 Msa0915530:intron 50.0%
CAACCACACTGACACAGTCA+CGG - chr6_2:31952606-31952625 None:intergenic 50.0%
TTTAAACTGTGGTCGCGGTC+CGG - chr6_2:31952676-31952695 None:intergenic 50.0%
!!! CCAGGGGAGGTTTTAAACTG+TGG - chr6_2:31952687-31952706 None:intergenic 50.0%
! CCACAGTTTAAAACCTCCCC+TGG + chr6_2:31952684-31952703 Msa0915530:intron 50.0%
! GTGATAATGATGTCCAGGGG+AGG - chr6_2:31952700-31952719 None:intergenic 50.0%
AGGTCCGGTTGATCCCAATT+TGG - chr6_2:31953085-31953104 None:intergenic 50.0%
CACTGTTGCCATCAAAGGTC+CGG - chr6_2:31953100-31953119 None:intergenic 50.0%
CTCTCGAATGCTACTCAAGG+GGG + chr6_2:31953129-31953148 Msa0915530:intron 50.0%
GCGTGTAAGCTACTCTTGTC+AGG - chr6_2:31953660-31953679 None:intergenic 50.0%
AGGGAAAGTCTCAACTACGC+TGG + chr6_2:31953749-31953768 Msa0915530:CDS 50.0%
CAGCAACGGGAGAATGTCAA+CGG + chr6_2:31953817-31953836 Msa0915530:CDS 50.0%
TCAACGGAACCCTGTCTACA+TGG + chr6_2:31953833-31953852 Msa0915530:CDS 50.0%
GGAGATCCAACCATGTAGAC+AGG - chr6_2:31953846-31953865 None:intergenic 50.0%
CGCTGTAACCAGCCCACAAA+GGG - chr6_2:31949569-31949588 None:intergenic 55.0%
ACGCTGTAACCAGCCCACAA+AGG - chr6_2:31949570-31949589 None:intergenic 55.0%
GCCCTCCATAATGGCTCCAA+AGG - chr6_2:31949693-31949712 None:intergenic 55.0%
AAAGCCCTCCAGAAAGGCTC+AGG - chr6_2:31949717-31949736 None:intergenic 55.0%
! AGCCTTTCTGGAGGGCTTTC+AGG + chr6_2:31949718-31949737 Msa0915530:intron 55.0%
TCCCAAGACTCGTGCTTAGG+GGG - chr6_2:31949772-31949791 None:intergenic 55.0%
GTCCCAAGACTCGTGCTTAG+GGG - chr6_2:31949773-31949792 None:intergenic 55.0%
! TTCAGATGCTTGCTAGGGGG+CGG + chr6_2:31949868-31949887 Msa0915530:intron 55.0%
AAGAAGGCTCCCTGAAGCTC+GGG - chr6_2:31949913-31949932 None:intergenic 55.0%
CAAGAAGGCTCCCTGAAGCT+CGG - chr6_2:31949914-31949933 None:intergenic 55.0%
AGCTTCAGGGAGCCTTCTTG+AGG + chr6_2:31949914-31949933 Msa0915530:intron 55.0%
TCACCGCTATCAGACCACTC+GGG - chr6_2:31950235-31950254 None:intergenic 55.0%
GTCACCGCTATCAGACCACT+CGG - chr6_2:31950236-31950255 None:intergenic 55.0%
! GATAGCGGTGACCTGATAGC+AGG + chr6_2:31950244-31950263 Msa0915530:intron 55.0%
CAGTTGGGCAACCTGCTATC+AGG - chr6_2:31950258-31950277 None:intergenic 55.0%
! GCAGGTTGCCCAACTGATTC+TGG + chr6_2:31950262-31950281 Msa0915530:intron 55.0%
CCGCTTGGTAGAAAAGGCTC+TGG - chr6_2:31952174-31952193 None:intergenic 55.0%
GGGATCAACCGGACCTTTGA+TGG + chr6_2:31953089-31953108 Msa0915530:CDS 55.0%
!! GCCGTACTCACCACTGATTC+AGG - chr6_2:31953168-31953187 None:intergenic 55.0%
CAGCTGCTACTCTTGGTCTG+TGG - chr6_2:31953552-31953571 None:intergenic 55.0%
CACAGACCAAGAGTAGCAGC+TGG + chr6_2:31953550-31953569 Msa0915530:intron 55.0%
GCTCGATGCCCTGTCCTTAA+AGG + chr6_2:31953678-31953697 Msa0915530:CDS 55.0%
TTGTCCAGCTTGGGCAGCAA+CGG + chr6_2:31953803-31953822 Msa0915530:CDS 55.0%
CGGAACCCTGTCTACATGGT+TGG + chr6_2:31953837-31953856 Msa0915530:CDS 55.0%
TGAGCGGAAAGATGGACGCG+TGG + chr6_2:31949200-31949219 Msa0915530:intron 60.0%
GAGCGGAAAGATGGACGCGT+GGG + chr6_2:31949201-31949220 Msa0915530:intron 60.0%
GGCCTGAAAGCCCTCCAGAA+AGG - chr6_2:31949723-31949742 None:intergenic 60.0%
TGGAGGGCTTTCAGGCCCTT+GGG + chr6_2:31949726-31949745 Msa0915530:intron 60.0%
AGCCCCCTAAGCACGAGTCT+TGG + chr6_2:31949767-31949786 Msa0915530:intron 60.0%
GCCCCCTAAGCACGAGTCTT+GGG + chr6_2:31949768-31949787 Msa0915530:intron 60.0%
AGGGACACACCCGAGCTTCA+GGG + chr6_2:31949901-31949920 Msa0915530:intron 60.0%
ATGCTCCAGATGGGCGTGAG+GGG - chr6_2:31950210-31950229 None:intergenic 60.0%
CATGCTCCAGATGGGCGTGA+GGG - chr6_2:31950211-31950230 None:intergenic 60.0%
ACTCGGGCCATGCTCCAGAT+GGG - chr6_2:31950219-31950238 None:intergenic 60.0%
TGGCCCGAGTGGTCTGATAG+CGG + chr6_2:31950229-31950248 Msa0915530:intron 60.0%
AGCAGAGCCGAGAGCAGGTT+AGG - chr6_2:31952503-31952522 None:intergenic 60.0%
CAAACAGCAGAGCCGAGAGC+AGG - chr6_2:31952508-31952527 None:intergenic 60.0%
TGTCCAGCTTGGGCAGCAAC+GGG + chr6_2:31953804-31953823 Msa0915530:CDS 60.0%
ACTAAGGCGGCGCCTCTGGA+AGG + chr6_2:31949656-31949675 Msa0915530:intron 65.0%
! CTAAGGCGGCGCCTCTGGAA+GGG + chr6_2:31949657-31949676 Msa0915530:intron 65.0%
! GAAGGGCGCGCCTAGTCCTT+TGG + chr6_2:31949674-31949693 Msa0915530:intron 65.0%
GGCTCAGGCGCCCTCCATAA+TGG - chr6_2:31949702-31949721 None:intergenic 65.0%
GGCGCCTGAGCCTTTCTGGA+GGG + chr6_2:31949710-31949729 Msa0915530:intron 65.0%
CTGGAGGGCTTTCAGGCCCT+TGG + chr6_2:31949725-31949744 Msa0915530:intron 65.0%
GACTCGTGCTTAGGGGGCTG+TGG - chr6_2:31949766-31949785 None:intergenic 65.0%
GAGGGACACACCCGAGCTTC+AGG + chr6_2:31949900-31949919 Msa0915530:intron 65.0%
TACACCCCCTCACGCCCATC+TGG + chr6_2:31950202-31950221 Msa0915530:intron 65.0%
TGCTCCAGATGGGCGTGAGG+GGG - chr6_2:31950209-31950228 None:intergenic 65.0%
CCATGCTCCAGATGGGCGTG+AGG - chr6_2:31950212-31950231 None:intergenic 65.0%
! CCTCACGCCCATCTGGAGCA+TGG + chr6_2:31950209-31950228 Msa0915530:intron 65.0%
CACTCGGGCCATGCTCCAGA+TGG - chr6_2:31950220-31950239 None:intergenic 65.0%
! CATCTGGAGCATGGCCCGAG+TGG + chr6_2:31950218-31950237 Msa0915530:intron 65.0%
TCTCCCGTTGCTGCCCAAGC+TGG - chr6_2:31953810-31953829 None:intergenic 65.0%
GCTGACTAAGGCGGCGCCTC+TGG + chr6_2:31949652-31949671 Msa0915530:intron 70.0%
GACTAGGCGCGCCCTTCCAG+AGG - chr6_2:31949671-31949690 None:intergenic 70.0%
!! GGAGGGCGCCTGAGCCTTTC+TGG + chr6_2:31949706-31949725 Msa0915530:intron 70.0%
GGGCGCCTGAGCCTTTCTGG+AGG + chr6_2:31949709-31949728 Msa0915530:intron 70.0%
TGCTAGGGGGCGGTGCCTCT+CGG + chr6_2:31949878-31949897 Msa0915530:intron 70.0%
CTCGGGTGTGTCCCTCCGAG+AGG - chr6_2:31949896-31949915 None:intergenic 70.0%
TAGGGGGCGGTGCCTCTCGG+AGG + chr6_2:31949881-31949900 Msa0915530:intron 75.0%
AGGGGGCGGTGCCTCTCGGA+GGG + chr6_2:31949882-31949901 Msa0915530:intron 75.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 31948691 31954183 31948691 ID=Msa0915530;Name=Msa0915530
chr6_2 mRNA 31948691 31954183 31948691 ID=Msa0915530-mRNA-1;Parent=Msa0915530;Name=Msa0915530-mRNA-1;_AED=0.30;_eAED=0.30;_QI=71|0.25|0.44|0.88|1|1|9|275|276
chr6_2 exon 31948691 31948832 31948691 ID=Msa0915530-mRNA-1:exon:5744;Parent=Msa0915530-mRNA-1
chr6_2 exon 31948921 31949006 31948921 ID=Msa0915530-mRNA-1:exon:5745;Parent=Msa0915530-mRNA-1
chr6_2 exon 31950786 31950793 31950786 ID=Msa0915530-mRNA-1:exon:5746;Parent=Msa0915530-mRNA-1
chr6_2 exon 31951389 31951454 31951389 ID=Msa0915530-mRNA-1:exon:5747;Parent=Msa0915530-mRNA-1
chr6_2 exon 31951496 31951501 31951496 ID=Msa0915530-mRNA-1:exon:5748;Parent=Msa0915530-mRNA-1
chr6_2 exon 31951634 31951702 31951634 ID=Msa0915530-mRNA-1:exon:5749;Parent=Msa0915530-mRNA-1
chr6_2 exon 31952853 31952910 31952853 ID=Msa0915530-mRNA-1:exon:5750;Parent=Msa0915530-mRNA-1
chr6_2 exon 31953004 31953116 31953004 ID=Msa0915530-mRNA-1:exon:5751;Parent=Msa0915530-mRNA-1
chr6_2 exon 31953555 31954183 31953555 ID=Msa0915530-mRNA-1:exon:5752;Parent=Msa0915530-mRNA-1
chr6_2 five_prime_UTR 31948691 31948761 31948691 ID=Msa0915530-mRNA-1:five_prime_utr;Parent=Msa0915530-mRNA-1
chr6_2 CDS 31948762 31948832 31948762 ID=Msa0915530-mRNA-1:cds;Parent=Msa0915530-mRNA-1
chr6_2 CDS 31948921 31949006 31948921 ID=Msa0915530-mRNA-1:cds;Parent=Msa0915530-mRNA-1
chr6_2 CDS 31950786 31950793 31950786 ID=Msa0915530-mRNA-1:cds;Parent=Msa0915530-mRNA-1
chr6_2 CDS 31951389 31951454 31951389 ID=Msa0915530-mRNA-1:cds;Parent=Msa0915530-mRNA-1
chr6_2 CDS 31951496 31951501 31951496 ID=Msa0915530-mRNA-1:cds;Parent=Msa0915530-mRNA-1
chr6_2 CDS 31951634 31951702 31951634 ID=Msa0915530-mRNA-1:cds;Parent=Msa0915530-mRNA-1
chr6_2 CDS 31952853 31952910 31952853 ID=Msa0915530-mRNA-1:cds;Parent=Msa0915530-mRNA-1
chr6_2 CDS 31953004 31953116 31953004 ID=Msa0915530-mRNA-1:cds;Parent=Msa0915530-mRNA-1
chr6_2 CDS 31953555 31953908 31953555 ID=Msa0915530-mRNA-1:cds;Parent=Msa0915530-mRNA-1
chr6_2 three_prime_UTR 31953909 31954183 31953909 ID=Msa0915530-mRNA-1:three_prime_utr;Parent=Msa0915530-mRNA-1
Gene Sequence

>Msa0915530

ATGTCTTTACTTACCTTTCTCCTCATCACCTTCTTCACCCTCTCGCTTCTAACACCTTCTTTCTCCGACAGCAGGAAAGAATTAAGGAACAAAAATGAAAATGTGTTAAAGCAGTTAAGAAATTCTGTTTATTATTCAAACAGAATTGATCCTTCACACTTTGATGCACAAGAAAAATCATCTGGAAATGGTGGCTATTCAAAGAAAGAGGAAACTTCATTGGATATGGATGCACTAGTCACTTCAAGAAAACTTACTGTAGGCCAATGTGACAGATTTCTGAATGATATTTACCATTTACTTAATGATGATATTGTCAAGAGGATTGAAGAAAGACTTTCGGTTTGGACTTTTCTTCCTAAAGAGAACAGCAAGCCTTTACAGGTCATGCATTATGGGCTTGAAAAAGATAGGCGGAACTTAGATTATTTCACAAACAAAACCAAATTGGGATCAACCGGACCTTTGATGGCAACAACCAAGAGTAGCAGCTGGTCAAATTGTAGAAATAACAGTGAGGTTCTCCAACCAGTTAAAGGGAATGCAGTTCTGTTTTTCTCTCTTAACCTAAATACATCTCCTGACAAGAGTAGCTTACACGCTCGATGCCCTGTCCTTAAAGGCGATATGTGGTCTGCAATTAAATTCTTCTATACAAGATCGATCAGTGGAGGGAAAGTCTCAACTACGCTGGAAGATGAAGATTGTACTGATGAAGATGATAGTTGTCCAGCTTGGGCAGCAACGGGAGAATGTCAACGGAACCCTGTCTACATGGTTGGATCTCCTGATTACTATGGTACTTGTCGGAAAAGCTGCAATGCATGCTGA

Protein sequence

>Msa0915530

MSLLTFLLITFFTLSLLTPSFSDSRKELRNKNENVLKQLRNSVYYSNRIDPSHFDAQEKSSGNGGYSKKEETSLDMDALVTSRKLTVGQCDRFLNDIYHLLNDDIVKRIEERLSVWTFLPKENSKPLQVMHYGLEKDRRNLDYFTNKTKLGSTGPLMATTKSSSWSNCRNNSEVLQPVKGNAVLFFSLNLNTSPDKSSLHARCPVLKGDMWSAIKFFYTRSISGGKVSTTLEDEDCTDEDDSCPAWAATGECQRNPVYMVGSPDYYGTCRKSCNAC*