Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0915530 | XP_013452366.1 | 74.224 | 322 | 12 | 3 | 1 | 276 | 1 | 297 | 2.72e-149 | 429 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0915530 | sp|Q8GXT7|P4H12_ARATH | 36.913 | 298 | 148 | 8 | 6 | 276 | 7 | 291 | 2.91e-50 | 170 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0888800 | Msa0915530 | 0.860292 | 2.285899e-63 | -8.615850e-47 |
Msa0915530 | Msa1082500 | 0.804113 | 2.524249e-49 | -8.615850e-47 |
Msa0915530 | Msa1338200 | 0.876812 | 1.036835e-68 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0915530 | MtrunA17_Chr6g0470551 | 74.224 | 322 | 12 | 3 | 1 | 276 | 1 | 297 | 2.50e-153 | 429 |
Msa0915530 | MtrunA17_Chr4g0066531 | 40.865 | 208 | 80 | 4 | 103 | 276 | 100 | 298 | 1.21e-43 | 150 |
Msa0915530 | MtrunA17_Chr6g0452281 | 38.806 | 201 | 95 | 4 | 102 | 276 | 113 | 311 | 8.05e-43 | 148 |
Msa0915530 | MtrunA17_Chr2g0286811 | 38.537 | 205 | 91 | 4 | 103 | 276 | 103 | 303 | 4.40e-39 | 138 |
Msa0915530 | MtrunA17_Chr3g0143381 | 32.867 | 143 | 69 | 3 | 103 | 218 | 132 | 274 | 8.94e-17 | 78.2 |
Msa0915530 | MtrunA17_Chr8g0371241 | 32.283 | 127 | 75 | 4 | 102 | 217 | 30 | 156 | 1.15e-15 | 73.2 |
Msa0915530 | MtrunA17_Chr8g0371281 | 31.250 | 144 | 72 | 3 | 103 | 219 | 129 | 272 | 1.52e-15 | 74.7 |
Msa0915530 | MtrunA17_Chr5g0406051 | 30.282 | 142 | 72 | 3 | 103 | 217 | 141 | 282 | 4.65e-15 | 73.6 |
Msa0915530 | MtrunA17_Chr3g0143361 | 30.216 | 139 | 76 | 2 | 103 | 220 | 32 | 170 | 5.91e-15 | 71.6 |
Msa0915530 | MtrunA17_Chr1g0213811 | 33.824 | 136 | 65 | 4 | 105 | 217 | 142 | 275 | 8.14e-15 | 72.8 |
Msa0915530 | MtrunA17_Chr8g0371251 | 31.034 | 145 | 73 | 3 | 102 | 219 | 130 | 274 | 1.02e-14 | 72.4 |
Msa0915530 | MtrunA17_Chr8g0371221 | 31.690 | 142 | 70 | 3 | 103 | 217 | 130 | 271 | 2.18e-14 | 71.6 |
Msa0915530 | MtrunA17_Chr8g0371231 | 28.169 | 142 | 75 | 3 | 103 | 217 | 55 | 196 | 1.69e-13 | 67.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0915530 | AT4G25600.1 | 36.913 | 298 | 148 | 8 | 6 | 276 | 7 | 291 | 2.96e-51 | 170 |
Msa0915530 | AT4G25600.2 | 43.299 | 194 | 83 | 3 | 103 | 276 | 53 | 239 | 2.35e-50 | 166 |
Msa0915530 | AT4G25600.4 | 43.299 | 194 | 83 | 3 | 103 | 276 | 41 | 227 | 2.72e-50 | 165 |
Msa0915530 | AT4G25600.3 | 43.299 | 194 | 83 | 3 | 103 | 276 | 44 | 230 | 2.79e-50 | 165 |
Msa0915530 | AT3G28490.1 | 39.303 | 201 | 89 | 3 | 102 | 276 | 95 | 288 | 2.07e-45 | 155 |
Msa0915530 | AT3G28480.2 | 36.667 | 210 | 103 | 3 | 93 | 276 | 117 | 322 | 1.69e-43 | 150 |
Msa0915530 | AT3G28480.1 | 37.313 | 201 | 96 | 3 | 102 | 276 | 118 | 314 | 4.26e-43 | 149 |
Msa0915530 | AT3G06300.1 | 39.901 | 203 | 89 | 5 | 103 | 276 | 101 | 299 | 2.12e-41 | 144 |
Msa0915530 | AT5G18900.1 | 36.946 | 203 | 95 | 4 | 103 | 276 | 100 | 298 | 3.25e-37 | 134 |
Msa0915530 | AT4G35810.1 | 32.192 | 146 | 72 | 3 | 102 | 220 | 142 | 287 | 3.92e-16 | 77.0 |
Msa0915530 | AT4G35810.2 | 32.192 | 146 | 72 | 3 | 102 | 220 | 142 | 287 | 3.92e-16 | 77.0 |
Msa0915530 | AT2G17720.1 | 31.724 | 145 | 72 | 3 | 102 | 219 | 142 | 286 | 1.17e-15 | 75.9 |
Msa0915530 | AT1G20270.1 | 29.861 | 144 | 74 | 3 | 103 | 219 | 139 | 282 | 5.75e-15 | 73.6 |
Msa0915530 | AT5G66060.1 | 29.577 | 142 | 73 | 3 | 103 | 217 | 141 | 282 | 1.94e-13 | 69.3 |
Msa0915530 | AT2G43080.1 | 28.571 | 140 | 79 | 3 | 105 | 223 | 144 | 283 | 3.64e-12 | 65.5 |
Find 65 sgRNAs with CRISPR-Local
Find 392 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGACCACATATCGCCTTTA+AGG | 0.151018 | 6_2:-31953692 | None:intergenic |
CCTTTACAGGTCATGCATTA+TGG | 0.184280 | 6_2:+31953015 | Msa0915530:CDS |
TTTCACAAACAAAACCAAAT+TGG | 0.191233 | 6_2:+31953068 | Msa0915530:CDS |
GCTCGATGCCCTGTCCTTAA+AGG | 0.210672 | 6_2:+31953678 | Msa0915530:CDS |
TCTTGTCAGGAGATGTATTT+AGG | 0.219035 | 6_2:-31953644 | None:intergenic |
AGAGAACAGCAAGCCTTTAC+AGG | 0.299865 | 6_2:+31953002 | Msa0915530:intron |
CTTTACAGGTCATGCATTAT+GGG | 0.305434 | 6_2:+31953016 | Msa0915530:CDS |
AGTGGCCTACATTAAGTAAA+TGG | 0.331369 | 6_2:-31951690 | None:intergenic |
AGAACTGCATTCCCTTTAAC+TGG | 0.334718 | 6_2:-31953606 | None:intergenic |
AGAGGAAACTTCATTGGATA+TGG | 0.342638 | 6_2:+31951430 | Msa0915530:CDS |
TTCACAAACAAAACCAAATT+GGG | 0.356049 | 6_2:+31953069 | Msa0915530:CDS |
AGGTCCGGTTGATCCCAATT+TGG | 0.361801 | 6_2:-31953082 | None:intergenic |
AAAGAAAGAGGAAACTTCAT+TGG | 0.368859 | 6_2:+31951424 | Msa0915530:CDS |
TTAGCAGCAGGAAAGAATTA+AGG | 0.376685 | 6_2:+31948914 | Msa0915530:intron |
GAGGTTCTCCAACCAGTTAA+AGG | 0.393818 | 6_2:+31953594 | Msa0915530:CDS |
TTGAAGAAAGACTTTCGGTT+TGG | 0.401961 | 6_2:+31952872 | Msa0915530:CDS |
AAAACCAAATTGGGATCAAC+CGG | 0.420089 | 6_2:+31953078 | Msa0915530:CDS |
GTTGGATCTCCTGATTACTA+TGG | 0.429222 | 6_2:+31953855 | Msa0915530:CDS |
CGACAAGTACCATAGTAATC+AGG | 0.442588 | 6_2:-31953864 | None:intergenic |
TAGAAGCGAGAGGGTGAAGA+AGG | 0.445042 | 6_2:-31948790 | None:intergenic |
GAGGATTGAAGAAAGACTTT+CGG | 0.449118 | 6_2:+31952867 | Msa0915530:CDS |
GTGAATTAACTGATATTCTC+AGG | 0.462191 | 6_2:+31953986 | Msa0915530:three_prime_UTR |
TCTCCCGTTGCTGCCCAAGC+TGG | 0.465114 | 6_2:-31953807 | None:intergenic |
CTGCATTCCCTTTAACTGGT+TGG | 0.472708 | 6_2:-31953602 | None:intergenic |
AAGAAGGTGTTAGAAGCGAG+AGG | 0.473143 | 6_2:-31948800 | None:intergenic |
AGATGATAGTTGTCCAGCTT+GGG | 0.474954 | 6_2:+31953794 | Msa0915530:CDS |
CACTGTTGCCATCAAAGGTC+CGG | 0.475147 | 6_2:-31953097 | None:intergenic |
TGTCCAGCTTGGGCAGCAAC+GGG | 0.476542 | 6_2:+31953804 | Msa0915530:CDS |
GCGTGTAAGCTACTCTTGTC+AGG | 0.476850 | 6_2:-31953657 | None:intergenic |
AGGTTCTCCAACCAGTTAAA+GGG | 0.477047 | 6_2:+31953595 | Msa0915530:CDS |
CCATAATGCATGACCTGTAA+AGG | 0.487176 | 6_2:-31953015 | None:intergenic |
AAGATGATAGTTGTCCAGCT+TGG | 0.488359 | 6_2:+31953793 | Msa0915530:CDS |
CGGAACCCTGTCTACATGGT+TGG | 0.491604 | 6_2:+31953837 | Msa0915530:CDS |
ATTTGACCAGCTGCTACTCT+TGG | 0.492285 | 6_2:-31953556 | None:intergenic |
GGAGATCCAACCATGTAGAC+AGG | 0.498626 | 6_2:-31953843 | None:intergenic |
AGAGGGTGAAGAAGGTGATG+AGG | 0.510106 | 6_2:-31948782 | None:intergenic |
TAACACCTTCTTTCTCCGAC+AGG | 0.514033 | 6_2:+31948811 | Msa0915530:CDS |
TTGTCCAGCTTGGGCAGCAA+CGG | 0.515020 | 6_2:+31953803 | Msa0915530:CDS |
CACATATCGCCTTTAAGGAC+AGG | 0.515314 | 6_2:-31953687 | None:intergenic |
AATTACCTGTCGGAGAAAGA+AGG | 0.515809 | 6_2:-31948816 | None:intergenic |
ATATATTGCCTAGTTAATTG+AGG | 0.520821 | 6_2:-31954033 | None:intergenic |
ATTCTGAGCTGCATATCAAA+AGG | 0.526949 | 6_2:+31954124 | Msa0915530:three_prime_UTR |
CTGATTACTATGGTACTTGT+CGG | 0.527249 | 6_2:+31953865 | Msa0915530:CDS |
TCAACGGAACCCTGTCTACA+TGG | 0.530423 | 6_2:+31953833 | Msa0915530:CDS |
CATTCAGAAATCTGTCACAT+TGG | 0.537495 | 6_2:-31951660 | None:intergenic |
TGGTGGCTATTCAAAGAAAG+AGG | 0.553698 | 6_2:+31951412 | Msa0915530:CDS |
AGAATCACTGTTGCCATCAA+AGG | 0.553753 | 6_2:-31953102 | None:intergenic |
GAAGAAGGTGATGAGGAGAA+AGG | 0.556142 | 6_2:-31948775 | None:intergenic |
AGAAGGTGTTAGAAGCGAGA+GGG | 0.558813 | 6_2:-31948799 | None:intergenic |
AATGCATGCTGATGAGAAGT+TGG | 0.573489 | 6_2:+31953897 | Msa0915530:exon |
ATGATGTTCCTCAATTAACT+AGG | 0.580542 | 6_2:+31954025 | Msa0915530:three_prime_UTR |
CACAGACCAAGAGTAGCAGC+TGG | 0.591686 | 6_2:+31953550 | Msa0915530:intron |
TGTACATTTCTCAAAAGCAA+AGG | 0.603530 | 6_2:-31954062 | None:intergenic |
CTGTCCTTAAAGGCGATATG+TGG | 0.609635 | 6_2:+31953688 | Msa0915530:CDS |
TATACAAGATCGATCAGTGG+AGG | 0.618199 | 6_2:+31953729 | Msa0915530:CDS |
AGGGAAAGTCTCAACTACGC+TGG | 0.624281 | 6_2:+31953749 | Msa0915530:CDS |
TTTAGGATGATATTGTCAAG+AGG | 0.632824 | 6_2:+31952848 | Msa0915530:intron |
ACTTCAAGAAAACTTACTGT+AGG | 0.640786 | 6_2:+31951637 | Msa0915530:CDS |
ATACAAGATCGATCAGTGGA+GGG | 0.641541 | 6_2:+31953730 | Msa0915530:CDS |
CAGCAACGGGAGAATGTCAA+CGG | 0.647505 | 6_2:+31953817 | Msa0915530:CDS |
TTCTATACAAGATCGATCAG+TGG | 0.652183 | 6_2:+31953726 | Msa0915530:CDS |
GAGATCCAACCATGTAGACA+GGG | 0.668526 | 6_2:-31953842 | None:intergenic |
ACATATCGCCTTTAAGGACA+GGG | 0.680203 | 6_2:-31953686 | None:intergenic |
TTGAAGAAGAAGAATCACGG+TGG | 0.754864 | 6_2:-31948733 | None:intergenic |
AAATTGTAGAAATAACAGTG+AGG | 0.789611 | 6_2:+31953575 | Msa0915530:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATATATATATAATAATAA+AGG | - | chr6_2:31949073-31949092 | None:intergenic | 0.0% |
!! | TATAATAATAAAGGAATAAA+GGG | - | chr6_2:31949064-31949083 | None:intergenic | 10.0% |
!! | ATATAATAATAAAGGAATAA+AGG | - | chr6_2:31949065-31949084 | None:intergenic | 10.0% |
!! | AATATTATTATTATTATGAG+CGG | + | chr6_2:31949184-31949203 | Msa0915530:intron | 10.0% |
!! | TTTAATTATATTATAAGTAG+AGG | + | chr6_2:31951163-31951182 | Msa0915530:intron | 10.0% |
!! | TTAATTATATTATAAGTAGA+GGG | + | chr6_2:31951164-31951183 | Msa0915530:intron | 10.0% |
!!! | TTTTAAATTACAGAAAATTA+TGG | - | chr6_2:31952645-31952664 | None:intergenic | 10.0% |
!! | TAATAATTAGAGTGAAATTA+GGG | - | chr6_2:31948861-31948880 | None:intergenic | 15.0% |
!! | ATAATAATTAGAGTGAAATT+AGG | - | chr6_2:31948862-31948881 | None:intergenic | 15.0% |
!!! | ATTTTTCTATTAGTTTGTTA+TGG | + | chr6_2:31949253-31949272 | Msa0915530:intron | 15.0% |
!!! | TTTTTCTATTAGTTTGTTAT+GGG | + | chr6_2:31949254-31949273 | Msa0915530:intron | 15.0% |
!!! | TTTTAAATTTGAGATAATAG+TGG | + | chr6_2:31949323-31949342 | Msa0915530:intron | 15.0% |
!! | TATGTTCATTAAAGATATAT+CGG | - | chr6_2:31950950-31950969 | None:intergenic | 15.0% |
!! | ATCAATGTAAAACTAATTTA+TGG | + | chr6_2:31951099-31951118 | Msa0915530:intron | 15.0% |
!! | TAATTATATTATAAGTAGAG+GGG | + | chr6_2:31951165-31951184 | Msa0915530:intron | 15.0% |
!! | TTATTGTCGAAAATTAATAT+AGG | + | chr6_2:31952329-31952348 | Msa0915530:intron | 15.0% |
!!! | AAATTTGGAATTAACTAATT+AGG | - | chr6_2:31952428-31952447 | None:intergenic | 15.0% |
!!! | GTAATTTAAAATATCATAAC+CGG | + | chr6_2:31952654-31952673 | Msa0915530:intron | 15.0% |
!! | AAACGGAAAAAAAAAATTAA+GGG | - | chr6_2:31953279-31953298 | None:intergenic | 15.0% |
!!! | TAAATTACACTGTTATTTTT+AGG | - | chr6_2:31953478-31953497 | None:intergenic | 15.0% |
!! | TAAAAATAACAGTGTAATTT+AGG | + | chr6_2:31953477-31953496 | Msa0915530:intron | 15.0% |
!!! | TTTTTTTTAAACTCGGTATT+CGG | + | chr6_2:31949090-31949109 | Msa0915530:intron | 20.0% |
!!! | AATAATATTGAGCTATGTTT+TGG | - | chr6_2:31949173-31949192 | None:intergenic | 20.0% |
!! | AATAAATGTTCATTTCCATT+TGG | + | chr6_2:31949289-31949308 | Msa0915530:intron | 20.0% |
!!! | AATGATATGGTATAGATTTT+TGG | + | chr6_2:31949433-31949452 | Msa0915530:intron | 20.0% |
!! | TTGAAAATTTGCATATGTAA+TGG | - | chr6_2:31949968-31949987 | None:intergenic | 20.0% |
!! | AGTTGTTTATTAGTAGAATT+CGG | + | chr6_2:31950065-31950084 | Msa0915530:intron | 20.0% |
!!! | GTATATTTAAAATGACGATA+TGG | - | chr6_2:31951031-31951050 | None:intergenic | 20.0% |
!! | TAAATATACAGTTACAAATG+TGG | + | chr6_2:31951042-31951061 | Msa0915530:intron | 20.0% |
!! | AAATATACAGTTACAAATGT+GGG | + | chr6_2:31951043-31951062 | Msa0915530:intron | 20.0% |
!! | TTGAAAGTCTTAAATAGAAA+TGG | - | chr6_2:31951207-31951226 | None:intergenic | 20.0% |
!! | ATAAGTATAGAAAAAAGTTC+AGG | - | chr6_2:31951463-31951482 | None:intergenic | 20.0% |
!!! | TATACTTATTTTGATGAACT+AGG | + | chr6_2:31951474-31951493 | Msa0915530:intron | 20.0% |
!! | ATTTACCATTTACTTAATGT+AGG | + | chr6_2:31951685-31951704 | Msa0915530:intron | 20.0% |
!!! | AAAACTGTTTTCATTATTTC+TGG | - | chr6_2:31951903-31951922 | None:intergenic | 20.0% |
!!! | TTTGACATTTTCATTGTTTA+TGG | + | chr6_2:31951923-31951942 | Msa0915530:intron | 20.0% |
!!! | TCTTCTACATTTTCAAAATT+TGG | - | chr6_2:31952443-31952462 | None:intergenic | 20.0% |
!! | TCATTAGTGTTATAAGTTAT+AGG | + | chr6_2:31952779-31952798 | Msa0915530:intron | 20.0% |
!! | AACGGAAAAAAAAAATTAAG+GGG | - | chr6_2:31953278-31953297 | None:intergenic | 20.0% |
!! | GAAACGGAAAAAAAAAATTA+AGG | - | chr6_2:31953280-31953299 | None:intergenic | 20.0% |
!! | AAGTAACATTTATAACTGAA+GGG | - | chr6_2:31953311-31953330 | None:intergenic | 20.0% |
!! | AAAGTAACATTTATAACTGA+AGG | - | chr6_2:31953312-31953331 | None:intergenic | 20.0% |
!! | TGTGTAATGATTGTAATTTA+AGG | + | chr6_2:31953414-31953433 | Msa0915530:intron | 20.0% |
!! | GTGTAATGATTGTAATTTAA+GGG | + | chr6_2:31953415-31953434 | Msa0915530:intron | 20.0% |
!! | CATAATCAAAAAGAAAACAA+AGG | - | chr6_2:31953518-31953537 | None:intergenic | 20.0% |
!!! | TTTTAATTTGATTGGAGAAT+AGG | + | chr6_2:31953950-31953969 | Msa0915530:three_prime_UTR | 20.0% |
!!! | ATTTTGAAGAAGAAGAATCA+CGG | - | chr6_2:31948739-31948758 | None:intergenic | 25.0% |
! | TGTGTAATTTAATTACCTGT+CGG | - | chr6_2:31948829-31948848 | None:intergenic | 25.0% |
! | TTAATATTTGTATTAGCAGC+AGG | + | chr6_2:31948902-31948921 | Msa0915530:intron | 25.0% |
!!! | CTAACTAACTACATTTTAGT+TGG | - | chr6_2:31949371-31949390 | None:intergenic | 25.0% |
! | CAACTAAAATGTAGTTAGTT+AGG | + | chr6_2:31949369-31949388 | Msa0915530:intron | 25.0% |
! | TTTGGATTGTCTTGATATAA+TGG | + | chr6_2:31949403-31949422 | Msa0915530:intron | 25.0% |
! | TAATGGTTTATGCAATGATA+TGG | + | chr6_2:31949420-31949439 | Msa0915530:intron | 25.0% |
! | TGAGTACAATATCAGATATT+AGG | + | chr6_2:31949488-31949507 | Msa0915530:intron | 25.0% |
! | GAGTACAATATCAGATATTA+GGG | + | chr6_2:31949489-31949508 | Msa0915530:intron | 25.0% |
! | ATTAGGGTTTAGTACTATAT+TGG | + | chr6_2:31949505-31949524 | Msa0915530:intron | 25.0% |
! | TATAAATTACCAATGATTCG+AGG | + | chr6_2:31950017-31950036 | Msa0915530:intron | 25.0% |
! | AGTAGAATTCGGTTATAATT+TGG | + | chr6_2:31950076-31950095 | Msa0915530:intron | 25.0% |
! | GTAGAATTCGGTTATAATTT+GGG | + | chr6_2:31950077-31950096 | Msa0915530:intron | 25.0% |
! | GCGAATGTGTTTATAAATTA+GGG | - | chr6_2:31950150-31950169 | None:intergenic | 25.0% |
! | TGCGAATGTGTTTATAAATT+AGG | - | chr6_2:31950151-31950170 | None:intergenic | 25.0% |
! | TCTGACATTTGATGAAAATA+TGG | - | chr6_2:31950176-31950195 | None:intergenic | 25.0% |
!! | TGATTCTGGATAAACATTTT+TGG | + | chr6_2:31950276-31950295 | Msa0915530:intron | 25.0% |
!! | GATTCTGGATAAACATTTTT+GGG | + | chr6_2:31950277-31950296 | Msa0915530:intron | 25.0% |
! | AAACAATGTGGTTATAAGTT+GGG | - | chr6_2:31950383-31950402 | None:intergenic | 25.0% |
! | TTTGGAAGAACTTATGAATA+AGG | - | chr6_2:31950569-31950588 | None:intergenic | 25.0% |
! | TGCAACATACCAAATAAATA+AGG | - | chr6_2:31950866-31950885 | None:intergenic | 25.0% |
! | TTCATTAAAGATATATCGGA+TGG | - | chr6_2:31950946-31950965 | None:intergenic | 25.0% |
!! | GTCAGTGTAAATTAGTTTAA+TGG | + | chr6_2:31950974-31950993 | Msa0915530:intron | 25.0% |
!! | ATTAGTTTAATGGACATTCA+AGG | + | chr6_2:31950984-31951003 | Msa0915530:intron | 25.0% |
!! | TTAGTTTAATGGACATTCAA+GGG | + | chr6_2:31950985-31951004 | Msa0915530:intron | 25.0% |
! | AATATACAGTTACAAATGTG+GGG | + | chr6_2:31951044-31951063 | Msa0915530:intron | 25.0% |
!!! | TGAGTTTTTTTTGCAATTCT+TGG | + | chr6_2:31951251-31951270 | Msa0915530:intron | 25.0% |
!! | GTTTGCATTGTGAAAATTTT+CGG | + | chr6_2:31951543-31951562 | Msa0915530:intron | 25.0% |
!! | TATTAGCTTATTCTTTGTGT+AGG | + | chr6_2:31951612-31951631 | Msa0915530:intron | 25.0% |
! | CTTCAAGAATAACTTAATGT+AGG | + | chr6_2:31951723-31951742 | Msa0915530:intron | 25.0% |
! | TCAGATATAAACCATTCTTA+GGG | + | chr6_2:31951752-31951771 | Msa0915530:intron | 25.0% |
!! | TATGTTTTCACAAAGTAAAC+AGG | + | chr6_2:31952036-31952055 | Msa0915530:intron | 25.0% |
! | AACAAGAACATGTAACATAA+TGG | - | chr6_2:31952220-31952239 | None:intergenic | 25.0% |
! | TTATAGGACAGAAATATTGA+AGG | - | chr6_2:31952250-31952269 | None:intergenic | 25.0% |
! | AGCAGAAAGATATTGAAAAA+CGG | + | chr6_2:31952536-31952555 | Msa0915530:intron | 25.0% |
! | TAACACTAATGAATTGTTCA+TGG | - | chr6_2:31952771-31952790 | None:intergenic | 25.0% |
! | TTGTAGACATTATTATGATG+AGG | + | chr6_2:31952809-31952828 | Msa0915530:intron | 25.0% |
! | TTGATCAAATAGATACCTTT+AGG | - | chr6_2:31952907-31952926 | None:intergenic | 25.0% |
! | TTTCACAAACAAAACCAAAT+TGG | + | chr6_2:31953068-31953087 | Msa0915530:CDS | 25.0% |
! | TTCACAAACAAAACCAAATT+GGG | + | chr6_2:31953069-31953088 | Msa0915530:CDS | 25.0% |
!! | TTGCGTACTATTTATCTTTT+AGG | + | chr6_2:31953204-31953223 | Msa0915530:intron | 25.0% |
! | TTTAGGCTAAATTAAACCTT+TGG | + | chr6_2:31953221-31953240 | Msa0915530:intron | 25.0% |
! | GAAACCTAAAAATGACTTAA+GGG | - | chr6_2:31953248-31953267 | None:intergenic | 25.0% |
! | TGAAACCTAAAAATGACTTA+AGG | - | chr6_2:31953249-31953268 | None:intergenic | 25.0% |
! | ATTACAATCATTACACACTT+TGG | - | chr6_2:31953411-31953430 | None:intergenic | 25.0% |
!! | CAAGTTTTTACGTTTCATTT+TGG | - | chr6_2:31953442-31953461 | None:intergenic | 25.0% |
! | CAAAATGAAACGTAAAAACT+TGG | + | chr6_2:31953440-31953459 | Msa0915530:intron | 25.0% |
!!! | GTTATTTTTAGGTTTCACTT+TGG | - | chr6_2:31953467-31953486 | None:intergenic | 25.0% |
!! | TAATTTAGGATATCTTGTTC+TGG | + | chr6_2:31953491-31953510 | Msa0915530:intron | 25.0% |
! | AAATTGTAGAAATAACAGTG+AGG | + | chr6_2:31953575-31953594 | Msa0915530:CDS | 25.0% |
!!! | TTTGCACAAATTTTTTTACG+TGG | + | chr6_2:31953921-31953940 | Msa0915530:three_prime_UTR | 25.0% |
!!! | GGTTGCTTTTTTAATTTGAT+TGG | + | chr6_2:31953942-31953961 | Msa0915530:three_prime_UTR | 25.0% |
! | ATATATTGCCTAGTTAATTG+AGG | - | chr6_2:31954036-31954055 | None:intergenic | 25.0% |
ATTAGAGTGAAATTAGGGAA+GGG | - | chr6_2:31948856-31948875 | None:intergenic | 30.0% | |
AATTAGAGTGAAATTAGGGA+AGG | - | chr6_2:31948857-31948876 | None:intergenic | 30.0% | |
GATTGAACCATCAAATTAGT+CGG | - | chr6_2:31949120-31949139 | None:intergenic | 30.0% | |
!!! | AGCTATGTTTTGGCTTTAAA+TGG | - | chr6_2:31949163-31949182 | None:intergenic | 30.0% |
TATTATTATGAGCGGAAAGA+TGG | + | chr6_2:31949192-31949211 | Msa0915530:intron | 30.0% | |
AAAACTAAATCTACGCCAAA+TGG | - | chr6_2:31949307-31949326 | None:intergenic | 30.0% | |
CTAAAATGTAGTTAGTTAGG+TGG | + | chr6_2:31949372-31949391 | Msa0915530:intron | 30.0% | |
GGCAAAATGATGAATCTATA+AGG | + | chr6_2:31949795-31949814 | Msa0915530:intron | 30.0% | |
GGTTGATTGTTCATATAAGT+AGG | + | chr6_2:31949816-31949835 | Msa0915530:intron | 30.0% | |
! | TTAAGTTGTTTATCCAAGCA+TGG | - | chr6_2:31950043-31950062 | None:intergenic | 30.0% |
TTGACTCTGACTTACAAAAT+TGG | + | chr6_2:31950106-31950125 | Msa0915530:intron | 30.0% | |
ATGTTTATCCAGAATCAGTT+GGG | - | chr6_2:31950273-31950292 | None:intergenic | 30.0% | |
AATGTTTATCCAGAATCAGT+TGG | - | chr6_2:31950274-31950293 | None:intergenic | 30.0% | |
AGATCTAGGTATTAGAAACT+TGG | + | chr6_2:31950303-31950322 | Msa0915530:intron | 30.0% | |
GATCTAGGTATTAGAAACTT+GGG | + | chr6_2:31950304-31950323 | Msa0915530:intron | 30.0% | |
CAAACAATGTGGTTATAAGT+TGG | - | chr6_2:31950384-31950403 | None:intergenic | 30.0% | |
CAACTTATAACCACATTGTT+TGG | + | chr6_2:31950382-31950401 | Msa0915530:intron | 30.0% | |
TAAAATATGGCCAAACAATG+TGG | - | chr6_2:31950395-31950414 | None:intergenic | 30.0% | |
GTCCAACATTGGATAAAATA+TGG | - | chr6_2:31950408-31950427 | None:intergenic | 30.0% | |
ATTTACATAGCTCTCAATGA+TGG | - | chr6_2:31950527-31950546 | None:intergenic | 30.0% | |
TCATAAGTTCTTCCAAATTG+TGG | + | chr6_2:31950572-31950591 | Msa0915530:intron | 30.0% | |
CTATGCAACAACTACTATTA+AGG | - | chr6_2:31950662-31950681 | None:intergenic | 30.0% | |
GAATCAACTAGCTGTAAAAA+GGG | - | chr6_2:31950743-31950762 | None:intergenic | 30.0% | |
AGAATCAACTAGCTGTAAAA+AGG | - | chr6_2:31950744-31950763 | None:intergenic | 30.0% | |
! | TTTGTACAAAGGCTTTTTGT+CGG | + | chr6_2:31950824-31950843 | Msa0915530:intron | 30.0% |
! | GTGTGACTACCTTATTTATT+TGG | + | chr6_2:31950854-31950873 | Msa0915530:intron | 30.0% |
ATATGGCATGGAAAAATGAA+GGG | - | chr6_2:31951014-31951033 | None:intergenic | 30.0% | |
! | TTTAAAATGACGATATGGCA+TGG | - | chr6_2:31951026-31951045 | None:intergenic | 30.0% |
TGATGAAGTGAATGATGTAA+AGG | - | chr6_2:31951137-31951156 | None:intergenic | 30.0% | |
!!! | TTACTCTATTGTTTTTGCCA+AGG | + | chr6_2:31951367-31951386 | Msa0915530:intron | 30.0% |
CAAGAAAAATCATCTGGAAA+TGG | + | chr6_2:31951392-31951411 | Msa0915530:CDS | 30.0% | |
AAAGAAAGAGGAAACTTCAT+TGG | + | chr6_2:31951424-31951443 | Msa0915530:CDS | 30.0% | |
! | AATAGACAAGATTTTCCCAT+CGG | - | chr6_2:31951596-31951615 | None:intergenic | 30.0% |
ACTTCAAGAAAACTTACTGT+AGG | + | chr6_2:31951637-31951656 | Msa0915530:CDS | 30.0% | |
GTCAGATATAAACCATTCTT+AGG | + | chr6_2:31951751-31951770 | Msa0915530:intron | 30.0% | |
ACAACGTTTCACAAAGTAAA+CGG | - | chr6_2:31951779-31951798 | None:intergenic | 30.0% | |
! | TTTGAAGTGAATCATTGTGA+TGG | + | chr6_2:31951844-31951863 | Msa0915530:intron | 30.0% |
!! | TTTTACTTGTTAACAAGCAC+AGG | - | chr6_2:31951984-31952003 | None:intergenic | 30.0% |
TATGGTTGATTGAGTGTTAT+AGG | - | chr6_2:31952266-31952285 | None:intergenic | 30.0% | |
ACATTTACTTGCAAAACACT+TGG | - | chr6_2:31952298-31952317 | None:intergenic | 30.0% | |
! | AAATTGCCAGGCTTTAATAT+GGG | + | chr6_2:31952367-31952386 | Msa0915530:intron | 30.0% |
TAATTAGTGTCCAAAGTTCA+GGG | - | chr6_2:31952405-31952424 | None:intergenic | 30.0% | |
GCAACTACTCATATATTTGT+AGG | + | chr6_2:31952476-31952495 | Msa0915530:intron | 30.0% | |
CAGAAAATTATGGCCAAATA+TGG | - | chr6_2:31952635-31952654 | None:intergenic | 30.0% | |
! | TATAGTGATAATGATGTCCA+GGG | - | chr6_2:31952704-31952723 | None:intergenic | 30.0% |
AACAAGTAATTGCAACATGT+TGG | - | chr6_2:31952728-31952747 | None:intergenic | 30.0% | |
TAATGAATTGTTCATGGTCA+AGG | - | chr6_2:31952765-31952784 | None:intergenic | 30.0% | |
! | TTTAGGATGATATTGTCAAG+AGG | + | chr6_2:31952848-31952867 | Msa0915530:intron | 30.0% |
!!! | GCTTTTAGAATTTGTATCAC+AGG | - | chr6_2:31952946-31952965 | None:intergenic | 30.0% |
ATTATGGGCTTGAAAAAGAT+AGG | + | chr6_2:31953031-31953050 | Msa0915530:CDS | 30.0% | |
GTGAATTAACTGATATTCTC+AGG | + | chr6_2:31953986-31954005 | Msa0915530:three_prime_UTR | 30.0% | |
ATGATGTTCCTCAATTAACT+AGG | + | chr6_2:31954025-31954044 | Msa0915530:three_prime_UTR | 30.0% | |
TGTACATTTCTCAAAAGCAA+AGG | - | chr6_2:31954065-31954084 | None:intergenic | 30.0% | |
TTAGCAGCAGGAAAGAATTA+AGG | + | chr6_2:31948914-31948933 | Msa0915530:intron | 35.0% | |
AAATGTAGTTAGTTAGGTGG+TGG | + | chr6_2:31949375-31949394 | Msa0915530:intron | 35.0% | |
CACAGCAAGTACATGTAAAA+TGG | - | chr6_2:31949470-31949489 | None:intergenic | 35.0% | |
TGGTATTTATAGCCCTTTGT+GGG | + | chr6_2:31949554-31949573 | Msa0915530:intron | 35.0% | |
GACCGTTAATATATTCCCAA+GGG | - | chr6_2:31949744-31949763 | None:intergenic | 35.0% | |
!!! | ACATTTTTGGGTTGAGATCT+AGG | + | chr6_2:31950289-31950308 | Msa0915530:intron | 35.0% |
TAGGTATTAGAAACTTGGGT+TGG | + | chr6_2:31950308-31950327 | Msa0915530:intron | 35.0% | |
AGGTATTAGAAACTTGGGTT+GGG | + | chr6_2:31950309-31950328 | Msa0915530:intron | 35.0% | |
TATAAGGCTGAGTAAGAGTT+AGG | - | chr6_2:31950335-31950354 | None:intergenic | 35.0% | |
!! | ACCTCAAAGTCGGTTTTATA+AGG | - | chr6_2:31950351-31950370 | None:intergenic | 35.0% |
! | GGCCATATTTTATCCAATGT+TGG | + | chr6_2:31950403-31950422 | Msa0915530:intron | 35.0% |
!! | TTTCTTGTTCCTTTTGCTGT+AGG | + | chr6_2:31950796-31950815 | Msa0915530:intron | 35.0% |
!! | TTCTTGTTCCTTTTGCTGTA+GGG | + | chr6_2:31950797-31950816 | Msa0915530:intron | 35.0% |
! | TGTAGGGTCTTTTTGTACAA+AGG | + | chr6_2:31950813-31950832 | Msa0915530:intron | 35.0% |
GATATGGCATGGAAAAATGA+AGG | - | chr6_2:31951015-31951034 | None:intergenic | 35.0% | |
ACATCATTCACTTCATCACT+TGG | + | chr6_2:31951139-31951158 | Msa0915530:intron | 35.0% | |
! | AGATGATTTTTCTTGTGCCT+TGG | - | chr6_2:31951387-31951406 | None:intergenic | 35.0% |
AAGGCACAAGAAAAATCATC+TGG | + | chr6_2:31951386-31951405 | Msa0915530:intron | 35.0% | |
GAAAAATCATCTGGAAATGG+TGG | + | chr6_2:31951395-31951414 | Msa0915530:CDS | 35.0% | |
AGAGGAAACTTCATTGGATA+TGG | + | chr6_2:31951430-31951449 | Msa0915530:CDS | 35.0% | |
GAACTAGGCACTAGTAAATT+AGG | + | chr6_2:31951489-31951508 | Msa0915530:intron | 35.0% | |
! | TTGTTCATTGTTTTCACCGA+TGG | + | chr6_2:31951577-31951596 | Msa0915530:intron | 35.0% |
! | TGTTCATTGTTTTCACCGAT+GGG | + | chr6_2:31951578-31951597 | Msa0915530:intron | 35.0% |
CATTCAGAAATCTGTCACAT+TGG | - | chr6_2:31951663-31951682 | None:intergenic | 35.0% | |
AGTGGCCTACATTAAGTAAA+TGG | - | chr6_2:31951693-31951712 | None:intergenic | 35.0% | |
TCTTGAAGTTATTCTGACAG+TGG | - | chr6_2:31951711-31951730 | None:intergenic | 35.0% | |
GAATGGTTTATATCTGACAG+TGG | - | chr6_2:31951749-31951768 | None:intergenic | 35.0% | |
AAGAACAAGCTAAACCTATG+AGG | - | chr6_2:31952075-31952094 | None:intergenic | 35.0% | |
!! | ACATGTACTGATTGTGTCTT+AGG | + | chr6_2:31952125-31952144 | Msa0915530:intron | 35.0% |
!! | AGGTTGACTTGGTTCTTAAT+TGG | + | chr6_2:31952145-31952164 | Msa0915530:intron | 35.0% |
ATCAATAACTATTGACCGCT+TGG | - | chr6_2:31952189-31952208 | None:intergenic | 35.0% | |
AACACTTGGCTTACAAGTTA+TGG | - | chr6_2:31952284-31952303 | None:intergenic | 35.0% | |
ACTTGTAAAAGCAAATTGCC+AGG | + | chr6_2:31952355-31952374 | Msa0915530:intron | 35.0% | |
! | CAAATTGCCAGGCTTTAATA+TGG | + | chr6_2:31952366-31952385 | Msa0915530:intron | 35.0% |
GTAATTAGTGTCCAAAGTTC+AGG | - | chr6_2:31952406-31952425 | None:intergenic | 35.0% | |
! | ATAGTGATAATGATGTCCAG+GGG | - | chr6_2:31952703-31952722 | None:intergenic | 35.0% |
! | CTATAGTGATAATGATGTCC+AGG | - | chr6_2:31952705-31952724 | None:intergenic | 35.0% |
! | GTTCTACACTGTTCTGTTTT+AGG | + | chr6_2:31952831-31952850 | Msa0915530:intron | 35.0% |
GAGGATTGAAGAAAGACTTT+CGG | + | chr6_2:31952867-31952886 | Msa0915530:CDS | 35.0% | |
TTGAAGAAAGACTTTCGGTT+TGG | + | chr6_2:31952872-31952891 | Msa0915530:CDS | 35.0% | |
! | GTTTGGACTTTTCTTCCTAA+AGG | + | chr6_2:31952889-31952908 | Msa0915530:CDS | 35.0% |
TTTGTATCACAGGCAAATAC+TGG | - | chr6_2:31952936-31952955 | None:intergenic | 35.0% | |
CTTTACAGGTCATGCATTAT+GGG | + | chr6_2:31953016-31953035 | Msa0915530:CDS | 35.0% | |
AAAACCAAATTGGGATCAAC+CGG | + | chr6_2:31953078-31953097 | Msa0915530:CDS | 35.0% | |
AAAATGACTTAAGGGACCAA+AGG | - | chr6_2:31953240-31953259 | None:intergenic | 35.0% | |
!!! | TGGTCCCTTAAGTCATTTTT+AGG | + | chr6_2:31953241-31953260 | Msa0915530:intron | 35.0% |
CTGAAGGGACTAAAATGAAA+CGG | - | chr6_2:31953296-31953315 | None:intergenic | 35.0% | |
! | CATTTTTCATTCGAGTCCAT+AGG | + | chr6_2:31953344-31953363 | Msa0915530:intron | 35.0% |
AGTTCGTCAAATGTTTCCTA+TGG | - | chr6_2:31953363-31953382 | None:intergenic | 35.0% | |
TCTTGTCAGGAGATGTATTT+AGG | - | chr6_2:31953647-31953666 | None:intergenic | 35.0% | |
TTCTATACAAGATCGATCAG+TGG | + | chr6_2:31953726-31953745 | Msa0915530:CDS | 35.0% | |
CTGATTACTATGGTACTTGT+CGG | + | chr6_2:31953865-31953884 | Msa0915530:CDS | 35.0% | |
ATTCTGAGCTGCATATCAAA+AGG | + | chr6_2:31954124-31954143 | Msa0915530:three_prime_UTR | 35.0% | |
TTGAAGAAGAAGAATCACGG+TGG | - | chr6_2:31948736-31948755 | None:intergenic | 40.0% | |
AATTACCTGTCGGAGAAAGA+AGG | - | chr6_2:31948819-31948838 | None:intergenic | 40.0% | |
!! | TTGAAGAAAGTACCTGACCT+TGG | - | chr6_2:31949033-31949052 | None:intergenic | 40.0% |
! | AGTTAGGTGGTGGTTAACTT+TGG | + | chr6_2:31949385-31949404 | Msa0915530:intron | 40.0% |
CACTCTTGGAATCATTCTCA+AGG | - | chr6_2:31949536-31949555 | None:intergenic | 40.0% | |
CTTGAGAATGATTCCAAGAG+TGG | + | chr6_2:31949534-31949553 | Msa0915530:intron | 40.0% | |
AGGGCTATAAATACCACTCT+TGG | - | chr6_2:31949550-31949569 | None:intergenic | 40.0% | |
GTGGTATTTATAGCCCTTTG+TGG | + | chr6_2:31949553-31949572 | Msa0915530:intron | 40.0% | |
!! | TTCTAGAAGCATCTAGAAGC+AGG | - | chr6_2:31949632-31949651 | None:intergenic | 40.0% |
! | ATGCTTCTAGAAGCTGACTA+AGG | + | chr6_2:31949640-31949659 | Msa0915530:intron | 40.0% |
GGCCCTTGGGAATATATTAA+CGG | + | chr6_2:31949739-31949758 | Msa0915530:intron | 40.0% | |
GGACCGTTAATATATTCCCA+AGG | - | chr6_2:31949745-31949764 | None:intergenic | 40.0% | |
! | GCCTTATAAAACCGACTTTG+AGG | + | chr6_2:31950347-31950366 | Msa0915530:intron | 40.0% |
!! | TAAAACCGACTTTGAGGTGA+AGG | + | chr6_2:31950353-31950372 | Msa0915530:intron | 40.0% |
GAAAACCTTCACCTCAAAGT+CGG | - | chr6_2:31950361-31950380 | None:intergenic | 40.0% | |
AAGTGCTAAGAGTCCAACAT+TGG | - | chr6_2:31950419-31950438 | None:intergenic | 40.0% | |
TCATTGCTGCAACCACAATT+TGG | - | chr6_2:31950587-31950606 | None:intergenic | 40.0% | |
! | GCTTCGTGATTCTTGATAGT+GGG | + | chr6_2:31950615-31950634 | Msa0915530:intron | 40.0% |
!! | CTTCGTGATTCTTGATAGTG+GGG | + | chr6_2:31950616-31950635 | Msa0915530:intron | 40.0% |
CAAAAAGACCCTACAGCAAA+AGG | - | chr6_2:31950808-31950827 | None:intergenic | 40.0% | |
! | CAAAGGCTTTTTGTCGGATA+AGG | + | chr6_2:31950830-31950849 | Msa0915530:intron | 40.0% |
TTGGTATGTTGCAGTCTCAT+TGG | + | chr6_2:31950873-31950892 | Msa0915530:intron | 40.0% | |
! | ATGTTGCAGTCTCATTGGTT+TGG | + | chr6_2:31950878-31950897 | Msa0915530:intron | 40.0% |
TGGTGGCTATTCAAAGAAAG+AGG | + | chr6_2:31951412-31951431 | Msa0915530:CDS | 40.0% | |
AAGTAAACGGACCCTAAGAA+TGG | - | chr6_2:31951766-31951785 | None:intergenic | 40.0% | |
!! | GATTGTGTCTTAGGTTGACT+TGG | + | chr6_2:31952134-31952153 | Msa0915530:intron | 40.0% |
TATTGACCGCTTGGTAGAAA+AGG | - | chr6_2:31952180-31952199 | None:intergenic | 40.0% | |
! | CCAGGCTTTAATATGGGATT+GGG | + | chr6_2:31952373-31952392 | Msa0915530:intron | 40.0% |
TGGGAAAAAACCCTGAACTT+TGG | + | chr6_2:31952392-31952411 | Msa0915530:intron | 40.0% | |
CCATAATGCATGACCTGTAA+AGG | - | chr6_2:31953018-31953037 | None:intergenic | 40.0% | |
CCTTTACAGGTCATGCATTA+TGG | + | chr6_2:31953015-31953034 | Msa0915530:CDS | 40.0% | |
ATGGGCTTGAAAAAGATAGG+CGG | + | chr6_2:31953034-31953053 | Msa0915530:CDS | 40.0% | |
AGAATCACTGTTGCCATCAA+AGG | - | chr6_2:31953105-31953124 | None:intergenic | 40.0% | |
ATCTCTCGAATGCTACTCAA+GGG | + | chr6_2:31953127-31953146 | Msa0915530:intron | 40.0% | |
AGGTTCTCCAACCAGTTAAA+GGG | + | chr6_2:31953595-31953614 | Msa0915530:CDS | 40.0% | |
AGAACTGCATTCCCTTTAAC+TGG | - | chr6_2:31953609-31953628 | None:intergenic | 40.0% | |
! | ACATATCGCCTTTAAGGACA+GGG | - | chr6_2:31953689-31953708 | None:intergenic | 40.0% |
TATACAAGATCGATCAGTGG+AGG | + | chr6_2:31953729-31953748 | Msa0915530:CDS | 40.0% | |
ATACAAGATCGATCAGTGGA+GGG | + | chr6_2:31953730-31953749 | Msa0915530:CDS | 40.0% | |
AAGATGATAGTTGTCCAGCT+TGG | + | chr6_2:31953793-31953812 | Msa0915530:CDS | 40.0% | |
AGATGATAGTTGTCCAGCTT+GGG | + | chr6_2:31953794-31953813 | Msa0915530:CDS | 40.0% | |
GTTGGATCTCCTGATTACTA+TGG | + | chr6_2:31953855-31953874 | Msa0915530:CDS | 40.0% | |
CGACAAGTACCATAGTAATC+AGG | - | chr6_2:31953867-31953886 | None:intergenic | 40.0% | |
AATGCATGCTGATGAGAAGT+TGG | + | chr6_2:31953897-31953916 | Msa0915530:exon | 40.0% | |
GAAGAAGGTGATGAGGAGAA+AGG | - | chr6_2:31948778-31948797 | None:intergenic | 45.0% | |
!! | AGAAGGTGTTAGAAGCGAGA+GGG | - | chr6_2:31948802-31948821 | None:intergenic | 45.0% |
!! | AAGAAGGTGTTAGAAGCGAG+AGG | - | chr6_2:31948803-31948822 | None:intergenic | 45.0% |
TAACACCTTCTTTCTCCGAC+AGG | + | chr6_2:31948811-31948830 | Msa0915530:CDS | 45.0% | |
GAGATTTGGACAACACGTGA+AGG | - | chr6_2:31949003-31949022 | None:intergenic | 45.0% | |
CACGTGTTGTCCAAATCTCT+TGG | + | chr6_2:31949004-31949023 | Msa0915530:intron | 45.0% | |
TCCAAATCTCTTGGCAACCA+AGG | + | chr6_2:31949013-31949032 | Msa0915530:intron | 45.0% | |
ACCTTGGTTGCCAAGAGATT+TGG | - | chr6_2:31949017-31949036 | None:intergenic | 45.0% | |
CTTTAAATGGACCCCTCAAG+TGG | - | chr6_2:31949150-31949169 | None:intergenic | 45.0% | |
ATTTATAGCCCTTTGTGGGC+TGG | + | chr6_2:31949558-31949577 | Msa0915530:intron | 45.0% | |
ACTTAAGCTCCAAGCAAGCT+GGG | + | chr6_2:31949591-31949610 | Msa0915530:intron | 45.0% | |
! | CTTCTAGAAGCTGACTAAGG+CGG | + | chr6_2:31949643-31949662 | Msa0915530:intron | 45.0% |
CATAATGGCTCCAAAGGACT+AGG | - | chr6_2:31949687-31949706 | None:intergenic | 45.0% | |
!! | CTAGTCCTTTGGAGCCATTA+TGG | + | chr6_2:31949685-31949704 | Msa0915530:intron | 45.0% |
!! | TCCTTTGGAGCCATTATGGA+GGG | + | chr6_2:31949689-31949708 | Msa0915530:intron | 45.0% |
! | GTGCTTTCAGATGCTTGCTA+GGG | + | chr6_2:31949863-31949882 | Msa0915530:intron | 45.0% |
! | TGCTTTCAGATGCTTGCTAG+GGG | + | chr6_2:31949864-31949883 | Msa0915530:intron | 45.0% |
! | TGTGCCTTTAGGAATGCAGA+TGG | + | chr6_2:31949941-31949960 | Msa0915530:intron | 45.0% |
TGGACCATCTGCATTCCTAA+AGG | - | chr6_2:31949948-31949967 | None:intergenic | 45.0% | |
CAAGAATCACGAAGCGATTG+TGG | - | chr6_2:31950610-31950629 | None:intergenic | 45.0% | |
CGCTTCGTGATTCTTGATAG+TGG | + | chr6_2:31950614-31950633 | Msa0915530:intron | 45.0% | |
GTTACAAATGTGGGGTGATG+TGG | + | chr6_2:31951052-31951071 | Msa0915530:intron | 45.0% | |
GGGGTGATGTGGCAAAATAA+AGG | + | chr6_2:31951063-31951082 | Msa0915530:intron | 45.0% | |
GCTCTTACGTTTCACCTCAT+AGG | + | chr6_2:31952058-31952077 | Msa0915530:intron | 45.0% | |
! | GCCAGGCTTTAATATGGGAT+TGG | + | chr6_2:31952372-31952391 | Msa0915530:intron | 45.0% |
CCCAATCCCATATTAAAGCC+TGG | - | chr6_2:31952376-31952395 | None:intergenic | 45.0% | |
GTGGTTGCATCAGCCATATT+TGG | + | chr6_2:31952619-31952638 | Msa0915530:intron | 45.0% | |
!!! | GAGGTTTTAAACTGTGGTCG+CGG | - | chr6_2:31952681-31952700 | None:intergenic | 45.0% |
ATCACAGGCAAATACTGGTG+TGG | - | chr6_2:31952931-31952950 | None:intergenic | 45.0% | |
AGAGAACAGCAAGCCTTTAC+AGG | + | chr6_2:31953002-31953021 | Msa0915530:intron | 45.0% | |
CATCTCTCGAATGCTACTCA+AGG | + | chr6_2:31953126-31953145 | Msa0915530:intron | 45.0% | |
TCTCTCGAATGCTACTCAAG+GGG | + | chr6_2:31953128-31953147 | Msa0915530:intron | 45.0% | |
AACCCTCTTTCCTGAATCAG+TGG | + | chr6_2:31953155-31953174 | Msa0915530:intron | 45.0% | |
!! | CACCACTGATTCAGGAAAGA+GGG | - | chr6_2:31953160-31953179 | None:intergenic | 45.0% |
!! | TCACCACTGATTCAGGAAAG+AGG | - | chr6_2:31953161-31953180 | None:intergenic | 45.0% |
TCCTGAATCAGTGGTGAGTA+CGG | + | chr6_2:31953164-31953183 | Msa0915530:intron | 45.0% | |
ATTTGACCAGCTGCTACTCT+TGG | - | chr6_2:31953559-31953578 | None:intergenic | 45.0% | |
GAGGTTCTCCAACCAGTTAA+AGG | + | chr6_2:31953594-31953613 | Msa0915530:CDS | 45.0% | |
CTGCATTCCCTTTAACTGGT+TGG | - | chr6_2:31953605-31953624 | None:intergenic | 45.0% | |
! | CACATATCGCCTTTAAGGAC+AGG | - | chr6_2:31953690-31953709 | None:intergenic | 45.0% |
CTGTCCTTAAAGGCGATATG+TGG | + | chr6_2:31953688-31953707 | Msa0915530:CDS | 45.0% | |
CAGACCACATATCGCCTTTA+AGG | - | chr6_2:31953695-31953714 | None:intergenic | 45.0% | |
GAGATCCAACCATGTAGACA+GGG | - | chr6_2:31953845-31953864 | None:intergenic | 45.0% | |
!!! | ATATATATTTTTTTTAAACT+CGG | + | chr6_2:31949083-31949102 | Msa0915530:intron | 5.0% |
AGAGGGTGAAGAAGGTGATG+AGG | - | chr6_2:31948785-31948804 | None:intergenic | 50.0% | |
TAGAAGCGAGAGGGTGAAGA+AGG | - | chr6_2:31948793-31948812 | None:intergenic | 50.0% | |
ATCTCTTGGCAACCAAGGTC+AGG | + | chr6_2:31949018-31949037 | Msa0915530:intron | 50.0% | |
CGGCGAACCGACTAATTTGA+TGG | + | chr6_2:31949110-31949129 | Msa0915530:intron | 50.0% | |
TCAATCTCACCGTCCACTTG+AGG | + | chr6_2:31949134-31949153 | Msa0915530:intron | 50.0% | |
CAATCTCACCGTCCACTTGA+GGG | + | chr6_2:31949135-31949154 | Msa0915530:intron | 50.0% | |
AATCTCACCGTCCACTTGAG+GGG | + | chr6_2:31949136-31949155 | Msa0915530:intron | 50.0% | |
AAATGGACCCCTCAAGTGGA+CGG | - | chr6_2:31949146-31949165 | None:intergenic | 50.0% | |
GACTTAAGCTCCAAGCAAGC+TGG | + | chr6_2:31949590-31949609 | Msa0915530:intron | 50.0% | |
! | GATCTAAAGCCCAGCTTGCT+TGG | - | chr6_2:31949603-31949622 | None:intergenic | 50.0% |
!! | GTCCTTTGGAGCCATTATGG+AGG | + | chr6_2:31949688-31949707 | Msa0915530:intron | 50.0% |
TGTCCCAAGACTCGTGCTTA+GGG | - | chr6_2:31949774-31949793 | None:intergenic | 50.0% | |
TTGTCCCAAGACTCGTGCTT+AGG | - | chr6_2:31949775-31949794 | None:intergenic | 50.0% | |
TAAGCACGAGTCTTGGGACA+AGG | + | chr6_2:31949774-31949793 | Msa0915530:intron | 50.0% | |
CGTGCTTTCAGATGCTTGCT+AGG | + | chr6_2:31949862-31949881 | Msa0915530:intron | 50.0% | |
! | GCTTTCAGATGCTTGCTAGG+GGG | + | chr6_2:31949865-31949884 | Msa0915530:intron | 50.0% |
AAGGCACAGATGCCTCAAGA+AGG | - | chr6_2:31949929-31949948 | None:intergenic | 50.0% | |
! | CTTGAGGCATCTGTGCCTTT+AGG | + | chr6_2:31949930-31949949 | Msa0915530:intron | 50.0% |
CAAGCATGGCCTCGAATCAT+TGG | - | chr6_2:31950029-31950048 | None:intergenic | 50.0% | |
CAATGATTCGAGGCCATGCT+TGG | + | chr6_2:31950027-31950046 | Msa0915530:intron | 50.0% | |
! | CCAGAGCCTTTTCTACCAAG+CGG | + | chr6_2:31952171-31952190 | Msa0915530:intron | 50.0% |
TGTAGGTCCTAACCTGCTCT+CGG | + | chr6_2:31952493-31952512 | Msa0915530:intron | 50.0% | |
ACGGTCTGCAATCGCAATTG+TGG | + | chr6_2:31952555-31952574 | Msa0915530:intron | 50.0% | |
TGCAATCGCAATTGTGGCTG+CGG | + | chr6_2:31952561-31952580 | Msa0915530:intron | 50.0% | |
TTTCCGTGACTGTGTCAGTG+TGG | + | chr6_2:31952600-31952619 | Msa0915530:intron | 50.0% | |
CAACCACACTGACACAGTCA+CGG | - | chr6_2:31952606-31952625 | None:intergenic | 50.0% | |
TTTAAACTGTGGTCGCGGTC+CGG | - | chr6_2:31952676-31952695 | None:intergenic | 50.0% | |
!!! | CCAGGGGAGGTTTTAAACTG+TGG | - | chr6_2:31952687-31952706 | None:intergenic | 50.0% |
! | CCACAGTTTAAAACCTCCCC+TGG | + | chr6_2:31952684-31952703 | Msa0915530:intron | 50.0% |
! | GTGATAATGATGTCCAGGGG+AGG | - | chr6_2:31952700-31952719 | None:intergenic | 50.0% |
AGGTCCGGTTGATCCCAATT+TGG | - | chr6_2:31953085-31953104 | None:intergenic | 50.0% | |
CACTGTTGCCATCAAAGGTC+CGG | - | chr6_2:31953100-31953119 | None:intergenic | 50.0% | |
CTCTCGAATGCTACTCAAGG+GGG | + | chr6_2:31953129-31953148 | Msa0915530:intron | 50.0% | |
GCGTGTAAGCTACTCTTGTC+AGG | - | chr6_2:31953660-31953679 | None:intergenic | 50.0% | |
AGGGAAAGTCTCAACTACGC+TGG | + | chr6_2:31953749-31953768 | Msa0915530:CDS | 50.0% | |
CAGCAACGGGAGAATGTCAA+CGG | + | chr6_2:31953817-31953836 | Msa0915530:CDS | 50.0% | |
TCAACGGAACCCTGTCTACA+TGG | + | chr6_2:31953833-31953852 | Msa0915530:CDS | 50.0% | |
GGAGATCCAACCATGTAGAC+AGG | - | chr6_2:31953846-31953865 | None:intergenic | 50.0% | |
CGCTGTAACCAGCCCACAAA+GGG | - | chr6_2:31949569-31949588 | None:intergenic | 55.0% | |
ACGCTGTAACCAGCCCACAA+AGG | - | chr6_2:31949570-31949589 | None:intergenic | 55.0% | |
GCCCTCCATAATGGCTCCAA+AGG | - | chr6_2:31949693-31949712 | None:intergenic | 55.0% | |
AAAGCCCTCCAGAAAGGCTC+AGG | - | chr6_2:31949717-31949736 | None:intergenic | 55.0% | |
! | AGCCTTTCTGGAGGGCTTTC+AGG | + | chr6_2:31949718-31949737 | Msa0915530:intron | 55.0% |
TCCCAAGACTCGTGCTTAGG+GGG | - | chr6_2:31949772-31949791 | None:intergenic | 55.0% | |
GTCCCAAGACTCGTGCTTAG+GGG | - | chr6_2:31949773-31949792 | None:intergenic | 55.0% | |
! | TTCAGATGCTTGCTAGGGGG+CGG | + | chr6_2:31949868-31949887 | Msa0915530:intron | 55.0% |
AAGAAGGCTCCCTGAAGCTC+GGG | - | chr6_2:31949913-31949932 | None:intergenic | 55.0% | |
CAAGAAGGCTCCCTGAAGCT+CGG | - | chr6_2:31949914-31949933 | None:intergenic | 55.0% | |
AGCTTCAGGGAGCCTTCTTG+AGG | + | chr6_2:31949914-31949933 | Msa0915530:intron | 55.0% | |
TCACCGCTATCAGACCACTC+GGG | - | chr6_2:31950235-31950254 | None:intergenic | 55.0% | |
GTCACCGCTATCAGACCACT+CGG | - | chr6_2:31950236-31950255 | None:intergenic | 55.0% | |
! | GATAGCGGTGACCTGATAGC+AGG | + | chr6_2:31950244-31950263 | Msa0915530:intron | 55.0% |
CAGTTGGGCAACCTGCTATC+AGG | - | chr6_2:31950258-31950277 | None:intergenic | 55.0% | |
! | GCAGGTTGCCCAACTGATTC+TGG | + | chr6_2:31950262-31950281 | Msa0915530:intron | 55.0% |
CCGCTTGGTAGAAAAGGCTC+TGG | - | chr6_2:31952174-31952193 | None:intergenic | 55.0% | |
GGGATCAACCGGACCTTTGA+TGG | + | chr6_2:31953089-31953108 | Msa0915530:CDS | 55.0% | |
!! | GCCGTACTCACCACTGATTC+AGG | - | chr6_2:31953168-31953187 | None:intergenic | 55.0% |
CAGCTGCTACTCTTGGTCTG+TGG | - | chr6_2:31953552-31953571 | None:intergenic | 55.0% | |
CACAGACCAAGAGTAGCAGC+TGG | + | chr6_2:31953550-31953569 | Msa0915530:intron | 55.0% | |
GCTCGATGCCCTGTCCTTAA+AGG | + | chr6_2:31953678-31953697 | Msa0915530:CDS | 55.0% | |
TTGTCCAGCTTGGGCAGCAA+CGG | + | chr6_2:31953803-31953822 | Msa0915530:CDS | 55.0% | |
CGGAACCCTGTCTACATGGT+TGG | + | chr6_2:31953837-31953856 | Msa0915530:CDS | 55.0% | |
TGAGCGGAAAGATGGACGCG+TGG | + | chr6_2:31949200-31949219 | Msa0915530:intron | 60.0% | |
GAGCGGAAAGATGGACGCGT+GGG | + | chr6_2:31949201-31949220 | Msa0915530:intron | 60.0% | |
GGCCTGAAAGCCCTCCAGAA+AGG | - | chr6_2:31949723-31949742 | None:intergenic | 60.0% | |
TGGAGGGCTTTCAGGCCCTT+GGG | + | chr6_2:31949726-31949745 | Msa0915530:intron | 60.0% | |
AGCCCCCTAAGCACGAGTCT+TGG | + | chr6_2:31949767-31949786 | Msa0915530:intron | 60.0% | |
GCCCCCTAAGCACGAGTCTT+GGG | + | chr6_2:31949768-31949787 | Msa0915530:intron | 60.0% | |
AGGGACACACCCGAGCTTCA+GGG | + | chr6_2:31949901-31949920 | Msa0915530:intron | 60.0% | |
ATGCTCCAGATGGGCGTGAG+GGG | - | chr6_2:31950210-31950229 | None:intergenic | 60.0% | |
CATGCTCCAGATGGGCGTGA+GGG | - | chr6_2:31950211-31950230 | None:intergenic | 60.0% | |
ACTCGGGCCATGCTCCAGAT+GGG | - | chr6_2:31950219-31950238 | None:intergenic | 60.0% | |
TGGCCCGAGTGGTCTGATAG+CGG | + | chr6_2:31950229-31950248 | Msa0915530:intron | 60.0% | |
AGCAGAGCCGAGAGCAGGTT+AGG | - | chr6_2:31952503-31952522 | None:intergenic | 60.0% | |
CAAACAGCAGAGCCGAGAGC+AGG | - | chr6_2:31952508-31952527 | None:intergenic | 60.0% | |
TGTCCAGCTTGGGCAGCAAC+GGG | + | chr6_2:31953804-31953823 | Msa0915530:CDS | 60.0% | |
ACTAAGGCGGCGCCTCTGGA+AGG | + | chr6_2:31949656-31949675 | Msa0915530:intron | 65.0% | |
! | CTAAGGCGGCGCCTCTGGAA+GGG | + | chr6_2:31949657-31949676 | Msa0915530:intron | 65.0% |
! | GAAGGGCGCGCCTAGTCCTT+TGG | + | chr6_2:31949674-31949693 | Msa0915530:intron | 65.0% |
GGCTCAGGCGCCCTCCATAA+TGG | - | chr6_2:31949702-31949721 | None:intergenic | 65.0% | |
GGCGCCTGAGCCTTTCTGGA+GGG | + | chr6_2:31949710-31949729 | Msa0915530:intron | 65.0% | |
CTGGAGGGCTTTCAGGCCCT+TGG | + | chr6_2:31949725-31949744 | Msa0915530:intron | 65.0% | |
GACTCGTGCTTAGGGGGCTG+TGG | - | chr6_2:31949766-31949785 | None:intergenic | 65.0% | |
GAGGGACACACCCGAGCTTC+AGG | + | chr6_2:31949900-31949919 | Msa0915530:intron | 65.0% | |
TACACCCCCTCACGCCCATC+TGG | + | chr6_2:31950202-31950221 | Msa0915530:intron | 65.0% | |
TGCTCCAGATGGGCGTGAGG+GGG | - | chr6_2:31950209-31950228 | None:intergenic | 65.0% | |
CCATGCTCCAGATGGGCGTG+AGG | - | chr6_2:31950212-31950231 | None:intergenic | 65.0% | |
! | CCTCACGCCCATCTGGAGCA+TGG | + | chr6_2:31950209-31950228 | Msa0915530:intron | 65.0% |
CACTCGGGCCATGCTCCAGA+TGG | - | chr6_2:31950220-31950239 | None:intergenic | 65.0% | |
! | CATCTGGAGCATGGCCCGAG+TGG | + | chr6_2:31950218-31950237 | Msa0915530:intron | 65.0% |
TCTCCCGTTGCTGCCCAAGC+TGG | - | chr6_2:31953810-31953829 | None:intergenic | 65.0% | |
GCTGACTAAGGCGGCGCCTC+TGG | + | chr6_2:31949652-31949671 | Msa0915530:intron | 70.0% | |
GACTAGGCGCGCCCTTCCAG+AGG | - | chr6_2:31949671-31949690 | None:intergenic | 70.0% | |
!! | GGAGGGCGCCTGAGCCTTTC+TGG | + | chr6_2:31949706-31949725 | Msa0915530:intron | 70.0% |
GGGCGCCTGAGCCTTTCTGG+AGG | + | chr6_2:31949709-31949728 | Msa0915530:intron | 70.0% | |
TGCTAGGGGGCGGTGCCTCT+CGG | + | chr6_2:31949878-31949897 | Msa0915530:intron | 70.0% | |
CTCGGGTGTGTCCCTCCGAG+AGG | - | chr6_2:31949896-31949915 | None:intergenic | 70.0% | |
TAGGGGGCGGTGCCTCTCGG+AGG | + | chr6_2:31949881-31949900 | Msa0915530:intron | 75.0% | |
AGGGGGCGGTGCCTCTCGGA+GGG | + | chr6_2:31949882-31949901 | Msa0915530:intron | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_2 | gene | 31948691 | 31954183 | 31948691 | ID=Msa0915530;Name=Msa0915530 |
chr6_2 | mRNA | 31948691 | 31954183 | 31948691 | ID=Msa0915530-mRNA-1;Parent=Msa0915530;Name=Msa0915530-mRNA-1;_AED=0.30;_eAED=0.30;_QI=71|0.25|0.44|0.88|1|1|9|275|276 |
chr6_2 | exon | 31948691 | 31948832 | 31948691 | ID=Msa0915530-mRNA-1:exon:5744;Parent=Msa0915530-mRNA-1 |
chr6_2 | exon | 31948921 | 31949006 | 31948921 | ID=Msa0915530-mRNA-1:exon:5745;Parent=Msa0915530-mRNA-1 |
chr6_2 | exon | 31950786 | 31950793 | 31950786 | ID=Msa0915530-mRNA-1:exon:5746;Parent=Msa0915530-mRNA-1 |
chr6_2 | exon | 31951389 | 31951454 | 31951389 | ID=Msa0915530-mRNA-1:exon:5747;Parent=Msa0915530-mRNA-1 |
chr6_2 | exon | 31951496 | 31951501 | 31951496 | ID=Msa0915530-mRNA-1:exon:5748;Parent=Msa0915530-mRNA-1 |
chr6_2 | exon | 31951634 | 31951702 | 31951634 | ID=Msa0915530-mRNA-1:exon:5749;Parent=Msa0915530-mRNA-1 |
chr6_2 | exon | 31952853 | 31952910 | 31952853 | ID=Msa0915530-mRNA-1:exon:5750;Parent=Msa0915530-mRNA-1 |
chr6_2 | exon | 31953004 | 31953116 | 31953004 | ID=Msa0915530-mRNA-1:exon:5751;Parent=Msa0915530-mRNA-1 |
chr6_2 | exon | 31953555 | 31954183 | 31953555 | ID=Msa0915530-mRNA-1:exon:5752;Parent=Msa0915530-mRNA-1 |
chr6_2 | five_prime_UTR | 31948691 | 31948761 | 31948691 | ID=Msa0915530-mRNA-1:five_prime_utr;Parent=Msa0915530-mRNA-1 |
chr6_2 | CDS | 31948762 | 31948832 | 31948762 | ID=Msa0915530-mRNA-1:cds;Parent=Msa0915530-mRNA-1 |
chr6_2 | CDS | 31948921 | 31949006 | 31948921 | ID=Msa0915530-mRNA-1:cds;Parent=Msa0915530-mRNA-1 |
chr6_2 | CDS | 31950786 | 31950793 | 31950786 | ID=Msa0915530-mRNA-1:cds;Parent=Msa0915530-mRNA-1 |
chr6_2 | CDS | 31951389 | 31951454 | 31951389 | ID=Msa0915530-mRNA-1:cds;Parent=Msa0915530-mRNA-1 |
chr6_2 | CDS | 31951496 | 31951501 | 31951496 | ID=Msa0915530-mRNA-1:cds;Parent=Msa0915530-mRNA-1 |
chr6_2 | CDS | 31951634 | 31951702 | 31951634 | ID=Msa0915530-mRNA-1:cds;Parent=Msa0915530-mRNA-1 |
chr6_2 | CDS | 31952853 | 31952910 | 31952853 | ID=Msa0915530-mRNA-1:cds;Parent=Msa0915530-mRNA-1 |
chr6_2 | CDS | 31953004 | 31953116 | 31953004 | ID=Msa0915530-mRNA-1:cds;Parent=Msa0915530-mRNA-1 |
chr6_2 | CDS | 31953555 | 31953908 | 31953555 | ID=Msa0915530-mRNA-1:cds;Parent=Msa0915530-mRNA-1 |
chr6_2 | three_prime_UTR | 31953909 | 31954183 | 31953909 | ID=Msa0915530-mRNA-1:three_prime_utr;Parent=Msa0915530-mRNA-1 |
Gene Sequence |
Protein sequence |