AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0888970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0888970 MtrunA17_Chr6g0461471 95.588 340 14 1 5 343 2 341 0.0 664
Msa0888970 MtrunA17_Chr6g0461511 63.112 347 126 1 4 350 23 367 1.21e-158 456
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0888970 AT5G18200.1 63.095 336 120 3 10 343 17 350 4.96e-164 462

Find 110 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGCTCATTTCCATGAAT+TGG 0.232171 6_1:-54522835 Msa0888970:CDS
AATGCGCACCCGAGATATTT+CGG 0.252180 6_1:-54524994 Msa0888970:CDS
AGTTCGGTGTTGGATGGGTT+TGG 0.297896 6_1:-54524869 Msa0888970:CDS
TACGAAGCTGTGGTGAGTTT+TGG 0.306156 6_1:+54525155 None:intergenic
TTCCAGTTCGGATTATTATC+TGG 0.319831 6_1:+54524968 None:intergenic
CACAATTGCTTAAGTTTGTA+TGG 0.322472 6_1:-54521079 Msa0888970:three_prime_UTR
GTTCGGTGTTGGATGGGTTT+GGG 0.323185 6_1:-54524868 Msa0888970:CDS
CAGATAGTGCCTCAACTAAT+TGG 0.326472 6_1:-54521510 Msa0888970:CDS
CAGAATTGGCATACAATCAT+TGG 0.328541 6_1:-54521539 Msa0888970:CDS
GCAGCATCCTCAGGGAAAAC+TGG 0.337155 6_1:+54521447 None:intergenic
AAGCTCTTCATGATAGCTTA+TGG 0.338510 6_1:-54521260 Msa0888970:three_prime_UTR
TGATGTGGTGTTGTCTGATT+TGG 0.356261 6_1:-54524813 Msa0888970:CDS
CTTATACAGAAGCACTTATA+TGG 0.359670 6_1:-54521185 Msa0888970:three_prime_UTR
ATGCGCACCCGAGATATTTC+GGG 0.359923 6_1:-54524993 Msa0888970:CDS
AAATAGAGCTTCCTCCAAAC+AGG 0.366855 6_1:+54521354 None:intergenic
ATAATCCGAACTGGAAGATT+CGG 0.378938 6_1:-54524961 Msa0888970:CDS
ACAGACCCCGTTTCATCAAC+CGG 0.379743 6_1:+54524893 None:intergenic
CCATGAATTGGATGCTGAAA+AGG 0.387668 6_1:-54522823 Msa0888970:intron
TCTGTAAGTTCGGTGTTGGA+TGG 0.389513 6_1:-54524875 Msa0888970:CDS
AGAATCTTTGCAGCATCCTC+AGG 0.393557 6_1:+54521438 None:intergenic
CGTTGGGAACTAACTTCACT+TGG 0.401320 6_1:+54525254 None:intergenic
CTGTTAACCTAGGCCCTGTT+TGG 0.404263 6_1:-54521368 Msa0888970:three_prime_UTR
GCGGGTTTCGAGCTCGCAAC+TGG 0.404379 6_1:-54521483 Msa0888970:CDS
GCAGACCCGGTTGATGAAAC+GGG 0.404547 6_1:-54524899 Msa0888970:CDS
TGATGATTTGGATTTGAAAT+CGG 0.408535 6_1:+54525075 None:intergenic
GGCTTGAGCTTCTATACTGT+TGG 0.412288 6_1:-54520999 Msa0888970:three_prime_UTR
GTTCGTTGCCCTTTCTGTAT+CGG 0.415234 6_1:-54525028 Msa0888970:CDS
ATGTTACAGGCAGTTGATCT+TGG 0.417966 6_1:-54521660 Msa0888970:intron
TGTCTGATTTGGAGAGGGAG+GGG 0.419011 6_1:-54524802 Msa0888970:CDS
AAACTCTATCAAATATGTTC+AGG 0.420894 6_1:-54524726 Msa0888970:intron
CCAAGACGGGCTGAAACATT+AGG 0.431537 6_1:+54523011 None:intergenic
TGCAGACCCGGTTGATGAAA+CGG 0.436349 6_1:-54524900 Msa0888970:CDS
GTGATAGGATTCGTGAGCTT+GGG 0.442215 6_1:-54524754 Msa0888970:CDS
GACTTAAGTCCCTCTTAAGA+TGG 0.446531 6_1:-54521052 Msa0888970:three_prime_UTR
GCATGGCGATGAGTCAGAAT+TGG 0.451891 6_1:-54521553 Msa0888970:CDS
TGTGATAGGATTCGTGAGCT+TGG 0.455222 6_1:-54524755 Msa0888970:CDS
TAATCCGAACTGGAAGATTC+GGG 0.459200 6_1:-54524960 Msa0888970:CDS
CTACTGTTTGAGAGAACCTA+TGG 0.460131 6_1:-54521320 Msa0888970:three_prime_UTR
ATCTGGCACCCGAAATATCT+CGG 0.460463 6_1:+54524985 None:intergenic
GGAACAATCCATATCTCAAA+AGG 0.462175 6_1:+54522867 None:intergenic
CTGTAAGTTCGGTGTTGGAT+GGG 0.462541 6_1:-54524874 Msa0888970:CDS
GCAACGAACACCAGTGGGAT+TGG 0.472736 6_1:+54525042 None:intergenic
TTGTCTGATTTGGAGAGGGA+GGG 0.478640 6_1:-54524803 Msa0888970:CDS
AGCCCGTCTTGGAAGTATGA+AGG 0.481150 6_1:-54523000 Msa0888970:CDS
GACTAGGATGATTGTTGCGT+TGG 0.483292 6_1:+54525237 None:intergenic
GATTTGGAGAGGGAGGGGAT+TGG 0.483449 6_1:-54524797 Msa0888970:CDS
TTAACCTAGGCCCTGTTTGG+AGG 0.487202 6_1:-54521365 Msa0888970:three_prime_UTR
TGCCAGATAATAATCCGAAC+TGG 0.487552 6_1:-54524970 Msa0888970:CDS
CCTAATGTTTCAGCCCGTCT+TGG 0.487742 6_1:-54523011 Msa0888970:CDS
GTTGTCTGATTTGGAGAGGG+AGG 0.487874 6_1:-54524804 Msa0888970:CDS
AAAGGAAATGAAGCGGCATA+AGG 0.490064 6_1:+54522885 None:intergenic
GCTTCCTCCAAACAGGGCCT+AGG 0.492163 6_1:+54521361 None:intergenic
TGATGTTGTTATTGAAACTC+CGG 0.499632 6_1:-54524840 Msa0888970:CDS
TGAAACGGGGTCTGTAAGTT+CGG 0.506441 6_1:-54524885 Msa0888970:CDS
GAAACATTAGGTGGAATAAC+GGG 0.507381 6_1:+54523023 None:intergenic
ATAACCCGAATCTTCCAGTT+CGG 0.507418 6_1:+54524956 None:intergenic
CTTACACAAGTTGTTTCCAT+AGG 0.510556 6_1:+54521304 None:intergenic
TGAAACATTAGGTGGAATAA+CGG 0.515108 6_1:+54523022 None:intergenic
ATCCTTCATACTTCCAAGAC+GGG 0.518956 6_1:+54522998 None:intergenic
TTACAGGCAGTTGATCTTGG+AGG 0.526027 6_1:-54521657 Msa0888970:intron
TGTTCGTTGCCGATACAGAA+AGG 0.529073 6_1:+54525019 None:intergenic
GACAACACCACATCATGATC+CGG 0.530034 6_1:+54524821 None:intergenic
ATCACGCGAACTTGCAGACC+CGG 0.531989 6_1:-54524912 Msa0888970:CDS
AAGACACAATCTTCAACCGT+TGG 0.537507 6_1:-54525132 Msa0888970:CDS
GGAGAGGGAGGGGATTGGTG+AGG 0.538006 6_1:-54524792 Msa0888970:CDS
CTGACATGATGACATCTCCT+TGG 0.538865 6_1:-54521020 Msa0888970:three_prime_UTR
GTTTGTTGAAACAAATGCTA+AGG 0.542952 6_1:-54521635 Msa0888970:CDS
GATGTGCAATCCATCTTAAG+AGG 0.545567 6_1:+54521042 None:intergenic
GCAAGTTCGCGTGATAGAGC+AGG 0.548770 6_1:+54524920 None:intergenic
GGGGTCTGTAAGTTCGGTGT+TGG 0.549390 6_1:-54524879 Msa0888970:CDS
CATTAGGTGGAATAACGGGC+AGG 0.552079 6_1:+54523027 None:intergenic
ATGCACCAGCTGCAGCGCCA+TGG 0.552085 6_1:+54523081 None:intergenic
AAAGAAAGAATCAAGTTCAA+AGG 0.556549 6_1:-54525286 None:intergenic
CCTCAACTAATTGGTACAGC+GGG 0.556856 6_1:-54521501 Msa0888970:CDS
TGGTGTTGTCTGATTTGGAG+AGG 0.557175 6_1:-54524808 Msa0888970:CDS
ACTAGGATGATTGTTGCGTT+GGG 0.561528 6_1:+54525238 None:intergenic
TCTGGCACCCGAAATATCTC+GGG 0.564075 6_1:+54524986 None:intergenic
AAGGATTATTTCGATCAGAC+CGG 0.566785 6_1:-54522981 Msa0888970:CDS
GGTGTTGTCTGATTTGGAGA+GGG 0.570255 6_1:-54524807 Msa0888970:CDS
GTTCGTTGCCGATACAGAAA+GGG 0.571106 6_1:+54525020 None:intergenic
TATTTGTGAAATTCAACGTG+AGG 0.580301 6_1:-54522949 Msa0888970:CDS
TGATTTGGATTTGAAATCGG+AGG 0.586303 6_1:+54525078 None:intergenic
AATCCTTCATACTTCCAAGA+CGG 0.586376 6_1:+54522997 None:intergenic
TCTGACTCATCGCCATGCAG+TGG 0.591121 6_1:+54521558 None:intergenic
CAGTATAGAAGCTCAAGCCA+AGG 0.591350 6_1:+54521003 None:intergenic
GTTGTTGTTTGTGACTGACT+AGG 0.593640 6_1:+54525221 None:intergenic
AGAAGTGAATGTTCCAGAGT+CGG 0.601184 6_1:-54521412 Msa0888970:CDS
GATTTGGATTTGAAATCGGA+GGG 0.602181 6_1:+54525079 None:intergenic
CAGACCCCGTTTCATCAACC+GGG 0.602311 6_1:+54524894 None:intergenic
GAATCTTTGCAGCATCCTCA+GGG 0.604054 6_1:+54521439 None:intergenic
TCATCATCATCCAATCCCAC+TGG 0.604692 6_1:-54525052 Msa0888970:CDS
TAAAGTAGTTTATCCAAACA+AGG 0.610736 6_1:-54521136 Msa0888970:three_prime_UTR
TAGAAACATACTGTTAACCT+AGG 0.611828 6_1:-54521378 Msa0888970:three_prime_UTR
GTGTGAATCATAAAGTTGAA+CGG 0.626973 6_1:+54521585 None:intergenic
ATTAGGTGGAATAACGGGCA+GGG 0.632534 6_1:+54523028 None:intergenic
ATGTGCAATCCATCTTAAGA+GGG 0.634367 6_1:+54521043 None:intergenic
GAAAGGGCAACGAACACCAG+TGG 0.640523 6_1:+54525036 None:intergenic
AATAGAGCTTCCTCCAAACA+GGG 0.643640 6_1:+54521355 None:intergenic
AAAGGGCAACGAACACCAGT+GGG 0.646174 6_1:+54525037 None:intergenic
AGACGGGCTGAAACATTAGG+TGG 0.656037 6_1:+54523014 None:intergenic
GCCTCAACTAATTGGTACAG+CGG 0.656139 6_1:-54521502 Msa0888970:CDS
CCCGCTGTACCAATTAGTTG+AGG 0.663084 6_1:+54521501 None:intergenic
TATCTCAAAAGGAAATGAAG+CGG 0.665656 6_1:+54522878 None:intergenic
ATTCACACAAGTCCACTGCA+TGG 0.668804 6_1:-54521570 Msa0888970:CDS
AAATGAGCAGAGTGATATCG+AGG 0.670405 6_1:+54522846 None:intergenic
ATTGTGTCTTTACGAAGCTG+TGG 0.677891 6_1:+54525145 None:intergenic
CAGACCCGGTTGATGAAACG+GGG 0.683416 6_1:-54524898 Msa0888970:CDS
TGAAACTCCGGATCATGATG+TGG 0.686786 6_1:-54524828 Msa0888970:CDS
CTGGTGAGAAGATAATCCAA+CGG 0.693199 6_1:+54525116 None:intergenic
TGAATCATAAAGTTGAACGG+CGG 0.737571 6_1:+54521588 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAGAATGAAGTATATT+AGG - chr6_1:54524132-54524151 Msa0888970:intron 15.0%
!! ATATAGAATGAAGTATATTA+GGG - chr6_1:54524133-54524152 Msa0888970:intron 15.0%
!! GCTTATAACTTATATAAAAA+CGG - chr6_1:54525013-54525032 Msa0888970:CDS 15.0%
!!! TTTATTAGCTTATAAAAACA+AGG + chr6_1:54525135-54525154 None:intergenic 15.0%
!!! GAATATAGTTGTAATGATTT+TGG - chr6_1:54521551-54521570 Msa0888970:CDS 20.0%
!! AAAAATGAATGAAAACTGTA+TGG - chr6_1:54521618-54521637 Msa0888970:CDS 20.0%
!!! TGTAGTTTTTTTATGCTATT+TGG - chr6_1:54521692-54521711 Msa0888970:intron 20.0%
!! TTTGTTTAATCTATATCCAA+CGG + chr6_1:54522196-54522215 None:intergenic 20.0%
!!! AAATTTCAAGCTTAGTATTT+TGG + chr6_1:54522253-54522272 None:intergenic 20.0%
!! AAAATACTAAGCTTGAAATT+TGG - chr6_1:54522252-54522271 Msa0888970:intron 20.0%
!!! TAATTTTAGTGTGGTAATTT+TGG - chr6_1:54522517-54522536 Msa0888970:intron 20.0%
!!! CTGAAAATCTTATATTTTCA+AGG + chr6_1:54522577-54522596 None:intergenic 20.0%
!!! AGATTTTCAGTTCTTAAAAT+TGG - chr6_1:54522587-54522606 Msa0888970:intron 20.0%
!! GACTTAACAAAATATATTTC+TGG - chr6_1:54522649-54522668 Msa0888970:intron 20.0%
!! TATAAAATGTTGTCAAATAG+CGG - chr6_1:54522968-54522987 Msa0888970:CDS 20.0%
!!! TTGACTTAATTTTATCGAAA+CGG - chr6_1:54525037-54525056 Msa0888970:CDS 20.0%
!! TGATGATTTGGATTTGAAAT+CGG + chr6_1:54521173-54521192 None:intergenic 25.0%
!!! TTTTTGTTGCTTATTGTGAT+AGG - chr6_1:54521476-54521495 Msa0888970:CDS 25.0%
! AAACTCTATCAAATATGTTC+AGG - chr6_1:54521519-54521538 Msa0888970:CDS 25.0%
!! TATAGTTGTAATGATTTTGG+TGG - chr6_1:54521554-54521573 Msa0888970:CDS 25.0%
! TGCTCAATTTGAATATTGTA+AGG - chr6_1:54521664-54521683 Msa0888970:intron 25.0%
!! TGCATTGATATTGAATTGAA+AGG - chr6_1:54521885-54521904 Msa0888970:intron 25.0%
! TATTGAATTGAAAGGATGTT+TGG - chr6_1:54521893-54521912 Msa0888970:intron 25.0%
! ATGGAGTATATACATATTAG+TGG - chr6_1:54522061-54522080 Msa0888970:intron 25.0%
!! AATCAAGATTCTTTGAAGAT+GGG + chr6_1:54522337-54522356 None:intergenic 25.0%
!! AAATCAAGATTCTTTGAAGA+TGG + chr6_1:54522338-54522357 None:intergenic 25.0%
!!! CACTATACATAATTTTAGTG+TGG - chr6_1:54522508-54522527 Msa0888970:intron 25.0%
!!! AATATATTTCTGGTATGAGA+TGG - chr6_1:54522659-54522678 Msa0888970:intron 25.0%
! TTGAGTTCATTAATCTTTGA+AGG - chr6_1:54523131-54523150 Msa0888970:intron 25.0%
!! TTCACAAATAGAACATTTTC+CGG + chr6_1:54523286-54523305 None:intergenic 25.0%
! TTAAGCATTAATAGGACTTT+GGG + chr6_1:54523468-54523487 None:intergenic 25.0%
! TTTAAGCATTAATAGGACTT+TGG + chr6_1:54523469-54523488 None:intergenic 25.0%
! CTTTGCATTTAAGCATTAAT+AGG + chr6_1:54523476-54523495 None:intergenic 25.0%
! TTGAATACTTAGATCTGAAA+TGG - chr6_1:54523636-54523655 Msa0888970:intron 25.0%
! AGAAATAATAAGAGCTAGAA+AGG + chr6_1:54523727-54523746 None:intergenic 25.0%
!! TATTATTTCTCTACATAGCT+CGG - chr6_1:54523737-54523756 Msa0888970:intron 25.0%
! AGAATTCTGAATAATACAGA+GGG + chr6_1:54524169-54524188 None:intergenic 25.0%
! TAGACATTCGGTAATAAAAA+GGG + chr6_1:54524374-54524393 None:intergenic 25.0%
! ATAGACATTCGGTAATAAAA+AGG + chr6_1:54524375-54524394 None:intergenic 25.0%
! CTATGATTATGATAGACATT+CGG + chr6_1:54524386-54524405 None:intergenic 25.0%
! TAAAGTAGTTTATCCAAACA+AGG - chr6_1:54525109-54525128 Msa0888970:CDS 25.0%
! TGATGTTGTTATTGAAACTC+CGG - chr6_1:54521405-54521424 Msa0888970:CDS 30.0%
TGGATACTATATATTGCACA+TGG + chr6_1:54522017-54522036 None:intergenic 30.0%
! ATGACAAAATGTGCAGATTT+TGG - chr6_1:54522215-54522234 Msa0888970:intron 30.0%
!!! AATGTGCAGATTTTGGTTTT+TGG - chr6_1:54522222-54522241 Msa0888970:intron 30.0%
GTACACGTTCAATATTATTG+TGG - chr6_1:54522541-54522560 Msa0888970:intron 30.0%
TCTGCAACTCTTAGTTTAAT+AGG + chr6_1:54522703-54522722 None:intergenic 30.0%
!!! GAGAGTTTTATTCTCTTGAA+TGG + chr6_1:54522727-54522746 None:intergenic 30.0%
TAATCTGAATCACATCTAAG+AGG + chr6_1:54522815-54522834 None:intergenic 30.0%
TGTGGATCTTGGAATTATTA+TGG - chr6_1:54522837-54522856 Msa0888970:CDS 30.0%
! GCATTAGTGTTGTTAAATAG+CGG - chr6_1:54522888-54522907 Msa0888970:CDS 30.0%
GCTATAACACTATTGTATAG+TGG - chr6_1:54522990-54523009 Msa0888970:CDS 30.0%
ACATAATGATGACTTGAAAC+AGG + chr6_1:54523105-54523124 None:intergenic 30.0%
!! TTGAAGGTGTTTAAAAACCA+TGG - chr6_1:54523147-54523166 Msa0888970:intron 30.0%
TGAAACATTAGGTGGAATAA+CGG + chr6_1:54523226-54523245 None:intergenic 30.0%
TATTTGTGAAATTCAACGTG+AGG - chr6_1:54523296-54523315 Msa0888970:intron 30.0%
! ATCGACATACTTCTTTTCAT+TGG - chr6_1:54523335-54523354 Msa0888970:intron 30.0%
TATCTCAAAAGGAAATGAAG+CGG + chr6_1:54523370-54523389 None:intergenic 30.0%
!!! CTTCATTTCCTTTTGAGATA+TGG - chr6_1:54523370-54523389 Msa0888970:intron 30.0%
! GAAGATGAGTGTTATGATTT+TGG - chr6_1:54523574-54523593 Msa0888970:intron 30.0%
AAAAAAGACCTAGCATCTAA+GGG + chr6_1:54523603-54523622 None:intergenic 30.0%
AAAAAAAGACCTAGCATCTA+AGG + chr6_1:54523604-54523623 None:intergenic 30.0%
!!! TAGATGCTAGGTCTTTTTTT+AGG - chr6_1:54523604-54523623 Msa0888970:intron 30.0%
!!! AGATGCTAGGTCTTTTTTTA+GGG - chr6_1:54523605-54523624 Msa0888970:intron 30.0%
! GCTATTCTTTTGACAAAGAA+CGG + chr6_1:54523686-54523705 None:intergenic 30.0%
CCAGAACTACTATAAATATG+GGG + chr6_1:54523849-54523868 None:intergenic 30.0%
CCCAGAACTACTATAAATAT+GGG + chr6_1:54523850-54523869 None:intergenic 30.0%
CCCATATTTATAGTAGTTCT+GGG - chr6_1:54523847-54523866 Msa0888970:intron 30.0%
TCCCAGAACTACTATAAATA+TGG + chr6_1:54523851-54523870 None:intergenic 30.0%
AGTACAACTGTTATCAGATA+AGG + chr6_1:54524032-54524051 None:intergenic 30.0%
GAATTCTGAATAATACAGAG+GGG + chr6_1:54524168-54524187 None:intergenic 30.0%
GAGAATTCTGAATAATACAG+AGG + chr6_1:54524170-54524189 None:intergenic 30.0%
GTATTCCTTCTTTGATTACA+CGG + chr6_1:54524197-54524216 None:intergenic 30.0%
GTGTAATCAAAGAAGGAATA+CGG - chr6_1:54524196-54524215 Msa0888970:intron 30.0%
!! AACAGAAGCATAAAAGTATC+AGG + chr6_1:54524284-54524303 None:intergenic 30.0%
ATAAAAAGGGATCTATGCAA+GGG + chr6_1:54524361-54524380 None:intergenic 30.0%
AATAAAAAGGGATCTATGCA+AGG + chr6_1:54524362-54524381 None:intergenic 30.0%
TAATCATAGTAGATTGCTAC+AGG - chr6_1:54524397-54524416 Msa0888970:intron 30.0%
! GTTTGTTGAAACAAATGCTA+AGG - chr6_1:54524610-54524629 Msa0888970:intron 30.0%
GTGTGAATCATAAAGTTGAA+CGG + chr6_1:54524663-54524682 None:intergenic 30.0%
TAGAAACATACTGTTAACCT+AGG - chr6_1:54524867-54524886 Msa0888970:CDS 30.0%
!! CTTATACAGAAGCACTTATA+TGG - chr6_1:54525060-54525079 Msa0888970:CDS 30.0%
!! TATAAAAACAAGGCCTTGTT+TGG + chr6_1:54525125-54525144 None:intergenic 30.0%
CACAATTGCTTAAGTTTGTA+TGG - chr6_1:54525166-54525185 Msa0888970:CDS 30.0%
!!! TGGTGAGTTTTGGTTTTTTG+AGG + chr6_1:54521083-54521102 None:intergenic 35.0%
! GATTTGGATTTGAAATCGGA+GGG + chr6_1:54521169-54521188 None:intergenic 35.0%
! TGATTTGGATTTGAAATCGG+AGG + chr6_1:54521170-54521189 None:intergenic 35.0%
! GGATGATGATGATGATGATT+TGG + chr6_1:54521185-54521204 None:intergenic 35.0%
TTCCAGTTCGGATTATTATC+TGG + chr6_1:54521280-54521299 None:intergenic 35.0%
ATAATCCGAACTGGAAGATT+CGG - chr6_1:54521284-54521303 Msa0888970:three_prime_UTR 35.0%
TATAGTATCCATGTTTGTGC+CGG - chr6_1:54522026-54522045 Msa0888970:intron 35.0%
ACTCCATATCTATTGAACAC+CGG + chr6_1:54522048-54522067 None:intergenic 35.0%
AATTCAAGATGTCTGTGCAT+TGG - chr6_1:54522167-54522186 Msa0888970:intron 35.0%
CACAATACATGGGTAAACAT+TGG + chr6_1:54522294-54522313 None:intergenic 35.0%
TTAATGAAACCACGTATGTC+CGG + chr6_1:54522386-54522405 None:intergenic 35.0%
!! GTCATTTTGAGTGTCATATC+CGG - chr6_1:54522456-54522475 Msa0888970:intron 35.0%
TGTGCATATAAATGAAGCAC+AGG + chr6_1:54522490-54522509 None:intergenic 35.0%
TTGTTAAGCTTGACACTGTT+TGG - chr6_1:54522618-54522637 Msa0888970:intron 35.0%
! GATGTGATTCAGATTAGTTG+TGG - chr6_1:54522819-54522838 Msa0888970:intron 35.0%
! TTCAGATTAGTTGTGGATCT+TGG - chr6_1:54522826-54522845 Msa0888970:CDS 35.0%
TTAACAACACTAATGCGCAA+TGG + chr6_1:54522884-54522903 None:intergenic 35.0%
TTGCAGATCACAGAAAATAG+CGG + chr6_1:54523028-54523047 None:intergenic 35.0%
GAAACATTAGGTGGAATAAC+GGG + chr6_1:54523225-54523244 None:intergenic 35.0%
AATCCTTCATACTTCCAAGA+CGG + chr6_1:54523251-54523270 None:intergenic 35.0%
AAGGATTATTTCGATCAGAC+CGG - chr6_1:54523264-54523283 Msa0888970:intron 35.0%
GGAACAATCCATATCTCAAA+AGG + chr6_1:54523381-54523400 None:intergenic 35.0%
!!! GATGCTAGGTCTTTTTTTAG+GGG - chr6_1:54523606-54523625 Msa0888970:intron 35.0%
! ACTTAGATCTGAAATGGTGT+TGG - chr6_1:54523642-54523661 Msa0888970:intron 35.0%
TAAGAGCTAGAAAGGAGAAA+AGG + chr6_1:54523719-54523738 None:intergenic 35.0%
CCCCATATTTATAGTAGTTC+TGG - chr6_1:54523846-54523865 Msa0888970:intron 35.0%
TCAACCATAGCATTCTTCTT+CGG + chr6_1:54523875-54523894 None:intergenic 35.0%
! TATGGTTGAAGCATTCTGAT+TGG - chr6_1:54523886-54523905 Msa0888970:intron 35.0%
ATAACGACATGTTCAAACTC+AGG + chr6_1:54523930-54523949 None:intergenic 35.0%
TCAAAGGTGAAACCATAACT+CGG + chr6_1:54524004-54524023 None:intergenic 35.0%
ATCAGATAAGGAGAACTCAA+AGG + chr6_1:54524020-54524039 None:intergenic 35.0%
! TTCTGGTTAGGAGAGAAAAA+GGG + chr6_1:54524239-54524258 None:intergenic 35.0%
!! TTTCTGGTTAGGAGAGAAAA+AGG + chr6_1:54524240-54524259 None:intergenic 35.0%
!! AGAAGCATAAAAGTATCAGG+AGG + chr6_1:54524281-54524300 None:intergenic 35.0%
TATCCTATAGCAATACCAGA+AGG + chr6_1:54524469-54524488 None:intergenic 35.0%
TATCTCGACATCTATGTTAC+AGG - chr6_1:54524572-54524591 Msa0888970:intron 35.0%
TGAATCATAAAGTTGAACGG+CGG + chr6_1:54524660-54524679 None:intergenic 35.0%
CAGAATTGGCATACAATCAT+TGG - chr6_1:54524706-54524725 Msa0888970:intron 35.0%
! CTTACACAAGTTGTTTCCAT+AGG + chr6_1:54524944-54524963 None:intergenic 35.0%
AAGCTCTTCATGATAGCTTA+TGG - chr6_1:54524985-54525004 Msa0888970:CDS 35.0%
ATGTGCAATCCATCTTAAGA+GGG + chr6_1:54525205-54525224 None:intergenic 35.0%
ACTAGGATGATTGTTGCGTT+GGG + chr6_1:54521010-54521029 None:intergenic 40.0%
!! GTTGTTGTTTGTGACTGACT+AGG + chr6_1:54521027-54521046 None:intergenic 40.0%
ATTGTGTCTTTACGAAGCTG+TGG + chr6_1:54521103-54521122 None:intergenic 40.0%
AAGACACAATCTTCAACCGT+TGG - chr6_1:54521113-54521132 Msa0888970:three_prime_UTR 40.0%
CTGGTGAGAAGATAATCCAA+CGG + chr6_1:54521132-54521151 None:intergenic 40.0%
TGCCAGATAATAATCCGAAC+TGG - chr6_1:54521275-54521294 Msa0888970:three_prime_UTR 40.0%
TAATCCGAACTGGAAGATTC+GGG - chr6_1:54521285-54521304 Msa0888970:three_prime_UTR 40.0%
ATAACCCGAATCTTCCAGTT+CGG + chr6_1:54521292-54521311 None:intergenic 40.0%
!! TGATGTGGTGTTGTCTGATT+TGG - chr6_1:54521432-54521451 Msa0888970:CDS 40.0%
! ACACCTTTGCTCAAAAGTGT+AGG + chr6_1:54521739-54521758 None:intergenic 40.0%
!! CTTTTGAGCAAAGGTGTGTT+TGG - chr6_1:54521742-54521761 Msa0888970:intron 40.0%
!! GTTTGGTGTACGAAATGTGT+TGG - chr6_1:54521910-54521929 Msa0888970:intron 40.0%
TTCGTCTTGAAGACGAATAG+TGG - chr6_1:54522119-54522138 Msa0888970:intron 40.0%
GCACAGACATCTTGAATTCA+GGG + chr6_1:54522165-54522184 None:intergenic 40.0%
TGCACAGACATCTTGAATTC+AGG + chr6_1:54522166-54522185 None:intergenic 40.0%
CTCATGCAGTCACAATACAT+GGG + chr6_1:54522304-54522323 None:intergenic 40.0%
ACTCATGCAGTCACAATACA+TGG + chr6_1:54522305-54522324 None:intergenic 40.0%
TATTGTGACTGCATGAGTTC+AGG - chr6_1:54522307-54522326 Msa0888970:intron 40.0%
ATTGTGACTGCATGAGTTCA+GGG - chr6_1:54522308-54522327 Msa0888970:intron 40.0%
! CAAGATTCTTTGAAGATGGG+AGG + chr6_1:54522334-54522353 None:intergenic 40.0%
TGTCTAACATGTATCTGTGC+CGG - chr6_1:54522364-54522383 Msa0888970:intron 40.0%
! TAGAGTGTCAGTGATAAGCT+GGG + chr6_1:54522751-54522770 None:intergenic 40.0%
! TTAGAGTGTCAGTGATAAGC+TGG + chr6_1:54522752-54522771 None:intergenic 40.0%
CACTAATGCGCAATGGAAAT+AGG + chr6_1:54522877-54522896 None:intergenic 40.0%
TGATCTGCAATTGACAACAC+TGG - chr6_1:54523038-54523057 Msa0888970:CDS 40.0%
ATGATGACTTGAAACAGGTG+CGG + chr6_1:54523100-54523119 None:intergenic 40.0%
ATCCTTCATACTTCCAAGAC+GGG + chr6_1:54523250-54523269 None:intergenic 40.0%
AAAGGAAATGAAGCGGCATA+AGG + chr6_1:54523363-54523382 None:intergenic 40.0%
AAATGAGCAGAGTGATATCG+AGG + chr6_1:54523402-54523421 None:intergenic 40.0%
CTCTGCTCATTTCCATGAAT+TGG - chr6_1:54523410-54523429 Msa0888970:intron 40.0%
! CCTTTTCAGCATCCAATTCA+TGG + chr6_1:54523425-54523444 None:intergenic 40.0%
CCATGAATTGGATGCTGAAA+AGG - chr6_1:54523422-54523441 Msa0888970:intron 40.0%
CCTTAATCTATGCGTGACAT+GGG + chr6_1:54523527-54523546 None:intergenic 40.0%
AAGGAGAAAAGGAGGAAGAA+AGG + chr6_1:54523708-54523727 None:intergenic 40.0%
AGAGTTCTCCAATCAATGTG+AGG - chr6_1:54523770-54523789 Msa0888970:intron 40.0%
GAGTTCTCCAATCAATGTGA+GGG - chr6_1:54523771-54523790 Msa0888970:intron 40.0%
AAATATGGGGAAAAACTCCC+AGG + chr6_1:54523836-54523855 None:intergenic 40.0%
GTATCAACCCACATATCAAG+GGG + chr6_1:54523982-54524001 None:intergenic 40.0%
GGTATCAACCCACATATCAA+GGG + chr6_1:54523983-54524002 None:intergenic 40.0%
TTGAATCTACCGAACTGTAC+CGG + chr6_1:54524088-54524107 None:intergenic 40.0%
CAGTTCGGTAGATTCAAAAC+TGG - chr6_1:54524091-54524110 Msa0888970:intron 40.0%
CAAAACTGGCACAGAAAAGA+AGG - chr6_1:54524105-54524124 Msa0888970:intron 40.0%
CTGATCCGTGTAATCAAAGA+AGG - chr6_1:54524189-54524208 Msa0888970:intron 40.0%
!! GAACTCACTCATTTCTGGTT+AGG + chr6_1:54524251-54524270 None:intergenic 40.0%
!! AAAAGTATCAGGAGGTAGCT+AGG + chr6_1:54524273-54524292 None:intergenic 40.0%
TAGTAGATTGCTACAGGTTG+TGG - chr6_1:54524403-54524422 Msa0888970:intron 40.0%
! TTGTGGATTTTGCAAAGCTC+TGG - chr6_1:54524420-54524439 Msa0888970:intron 40.0%
! TGTGGATTTTGCAAAGCTCT+GGG - chr6_1:54524421-54524440 Msa0888970:intron 40.0%
GAACCTTCTGGTATTGCTAT+AGG - chr6_1:54524463-54524482 Msa0888970:intron 40.0%
ATGTTACAGGCAGTTGATCT+TGG - chr6_1:54524585-54524604 Msa0888970:intron 40.0%
CAGATAGTGCCTCAACTAAT+TGG - chr6_1:54524735-54524754 Msa0888970:CDS 40.0%
! CATAAATCCAGTTTTCCCTG+AGG - chr6_1:54524791-54524810 Msa0888970:CDS 40.0%
AGAAGTGAATGTTCCAGAGT+CGG - chr6_1:54524833-54524852 Msa0888970:CDS 40.0%
TTCCAGAGTCGGAACAAAAA+AGG - chr6_1:54524844-54524863 Msa0888970:CDS 40.0%
!!! TACCTTTTTTGTTCCGACTC+TGG + chr6_1:54524849-54524868 None:intergenic 40.0%
AATAGAGCTTCCTCCAAACA+GGG + chr6_1:54524893-54524912 None:intergenic 40.0%
AAATAGAGCTTCCTCCAAAC+AGG + chr6_1:54524894-54524913 None:intergenic 40.0%
CTACTGTTTGAGAGAACCTA+TGG - chr6_1:54524925-54524944 Msa0888970:CDS 40.0%
GACTTAAGTCCCTCTTAAGA+TGG - chr6_1:54525193-54525212 Msa0888970:CDS 40.0%
GATGTGCAATCCATCTTAAG+AGG + chr6_1:54525206-54525225 None:intergenic 40.0%
CGTTGGGAACTAACTTCACT+TGG + chr6_1:54520994-54521013 None:intergenic 45.0%
GACTAGGATGATTGTTGCGT+TGG + chr6_1:54521011-54521030 None:intergenic 45.0%
! TACGAAGCTGTGGTGAGTTT+TGG + chr6_1:54521093-54521112 None:intergenic 45.0%
TCATCATCATCCAATCCCAC+TGG - chr6_1:54521193-54521212 Msa0888970:three_prime_UTR 45.0%
GTTCGTTGCCCTTTCTGTAT+CGG - chr6_1:54521217-54521236 Msa0888970:three_prime_UTR 45.0%
GTTCGTTGCCGATACAGAAA+GGG + chr6_1:54521228-54521247 None:intergenic 45.0%
TGTTCGTTGCCGATACAGAA+AGG + chr6_1:54521229-54521248 None:intergenic 45.0%
AATGCGCACCCGAGATATTT+CGG - chr6_1:54521251-54521270 Msa0888970:three_prime_UTR 45.0%
ATCTGGCACCCGAAATATCT+CGG + chr6_1:54521263-54521282 None:intergenic 45.0%
TGAAACGGGGTCTGTAAGTT+CGG - chr6_1:54521360-54521379 Msa0888970:three_prime_UTR 45.0%
!! TCTGTAAGTTCGGTGTTGGA+TGG - chr6_1:54521370-54521389 Msa0888970:three_prime_UTR 45.0%
!! CTGTAAGTTCGGTGTTGGAT+GGG - chr6_1:54521371-54521390 Msa0888970:three_prime_UTR 45.0%
TGAAACTCCGGATCATGATG+TGG - chr6_1:54521417-54521436 Msa0888970:CDS 45.0%
GACAACACCACATCATGATC+CGG + chr6_1:54521427-54521446 None:intergenic 45.0%
!! TGGTGTTGTCTGATTTGGAG+AGG - chr6_1:54521437-54521456 Msa0888970:CDS 45.0%
!! GGTGTTGTCTGATTTGGAGA+GGG - chr6_1:54521438-54521457 Msa0888970:CDS 45.0%
!! TTGTCTGATTTGGAGAGGGA+GGG - chr6_1:54521442-54521461 Msa0888970:CDS 45.0%
TGTGATAGGATTCGTGAGCT+TGG - chr6_1:54521490-54521509 Msa0888970:CDS 45.0%
GTGATAGGATTCGTGAGCTT+GGG - chr6_1:54521491-54521510 Msa0888970:CDS 45.0%
! GCACCTACACTTTTGAGCAA+AGG - chr6_1:54521733-54521752 Msa0888970:intron 45.0%
! GTCGAGTCTGTTGTTTGTGT+CGG - chr6_1:54521807-54521826 Msa0888970:intron 45.0%
! TGTTTGTGTCGGTGCTTCAT+AGG - chr6_1:54521818-54521837 Msa0888970:intron 45.0%
ATTGAACACCGGCACAAACA+TGG + chr6_1:54522037-54522056 None:intergenic 45.0%
! GTGCCGGTGTTCAATAGATA+TGG - chr6_1:54522042-54522061 Msa0888970:intron 45.0%
TCGTCTTCAAGACGAAGTGT+CGG + chr6_1:54522115-54522134 None:intergenic 45.0%
!! ATTAGGTGGAATAACGGGCA+GGG + chr6_1:54523220-54523239 None:intergenic 45.0%
CCCATGTCACGCATAGATTA+AGG - chr6_1:54523524-54523543 Msa0888970:intron 45.0%
GCCTTAATCTATGCGTGACA+TGG + chr6_1:54523528-54523547 None:intergenic 45.0%
GTCACGCATAGATTAAGGCT+CGG - chr6_1:54523529-54523548 Msa0888970:intron 45.0%
TTTGGCAACCCTTAGATGCT+AGG - chr6_1:54523592-54523611 Msa0888970:intron 45.0%
GAGCTAGAAAGGAGAAAAGG+AGG + chr6_1:54523716-54523735 None:intergenic 45.0%
TCCAATCAATGTGAGGGAGA+GGG - chr6_1:54523777-54523796 Msa0888970:intron 45.0%
! ATGAAGTGTCAGTCTGTACC+TGG - chr6_1:54523815-54523834 Msa0888970:intron 45.0%
! TGAAGTGTCAGTCTGTACCT+GGG - chr6_1:54523816-54523835 Msa0888970:intron 45.0%
GGATCCGAAGAAGAATGCTA+TGG - chr6_1:54523868-54523887 Msa0888970:intron 45.0%
AGCACTTTCCCCTTGATATG+TGG - chr6_1:54523971-54523990 Msa0888970:intron 45.0%
GCACTTTCCCCTTGATATGT+GGG - chr6_1:54523972-54523991 Msa0888970:intron 45.0%
CGGTATCAACCCACATATCA+AGG + chr6_1:54523984-54524003 None:intergenic 45.0%
!! TGTGGGTTGATACCGAGTTA+TGG - chr6_1:54523989-54524008 Msa0888970:intron 45.0%
TGATAAGAGGGAGCTCTCAT+TGG + chr6_1:54524057-54524076 None:intergenic 45.0%
AATGAGAGCTCCCTCTTATC+AGG - chr6_1:54524056-54524075 Msa0888970:intron 45.0%
TGAATCTACCGAACTGTACC+GGG + chr6_1:54524087-54524106 None:intergenic 45.0%
GCTAGGAACTCACTCATTTC+TGG + chr6_1:54524256-54524275 None:intergenic 45.0%
ATCATCGTAGGCGAGTAGAA+GGG + chr6_1:54524338-54524357 None:intergenic 45.0%
TCTATGCAAGGGATCATCGT+AGG + chr6_1:54524350-54524369 None:intergenic 45.0%
! TAGCATAGCACTGAACCTTC+TGG - chr6_1:54524451-54524470 Msa0888970:intron 45.0%
TTTCTCCAATTCTGCGCTTC+TGG - chr6_1:54524530-54524549 Msa0888970:intron 45.0%
TTACAGGCAGTTGATCTTGG+AGG - chr6_1:54524588-54524607 Msa0888970:intron 45.0%
ATTCACACAAGTCCACTGCA+TGG - chr6_1:54524675-54524694 Msa0888970:intron 45.0%
GCCTCAACTAATTGGTACAG+CGG - chr6_1:54524743-54524762 Msa0888970:CDS 45.0%
CCTCAACTAATTGGTACAGC+GGG - chr6_1:54524744-54524763 Msa0888970:CDS 45.0%
GAATCTTTGCAGCATCCTCA+GGG + chr6_1:54524809-54524828 None:intergenic 45.0%
AGAATCTTTGCAGCATCCTC+AGG + chr6_1:54524810-54524829 None:intergenic 45.0%
CTGACATGATGACATCTCCT+TGG - chr6_1:54525225-54525244 Msa0888970:five_prime_UTR 45.0%
CAGTATAGAAGCTCAAGCCA+AGG + chr6_1:54525245-54525264 None:intergenic 45.0%
GGCTTGAGCTTCTATACTGT+TGG - chr6_1:54525246-54525265 Msa0888970:five_prime_UTR 45.0%
!! GAGGGTCGTTTTGATCTTGC+TGG + chr6_1:54521151-54521170 None:intergenic 50.0%
AAAGGGCAACGAACACCAGT+GGG + chr6_1:54521211-54521230 None:intergenic 50.0%
ATGCGCACCCGAGATATTTC+GGG - chr6_1:54521252-54521271 Msa0888970:three_prime_UTR 50.0%
TCTGGCACCCGAAATATCTC+GGG + chr6_1:54521262-54521281 None:intergenic 50.0%
!! TGCAGACCCGGTTGATGAAA+CGG - chr6_1:54521345-54521364 Msa0888970:three_prime_UTR 50.0%
ACAGACCCCGTTTCATCAAC+CGG + chr6_1:54521355-54521374 None:intergenic 50.0%
!! AGTTCGGTGTTGGATGGGTT+TGG - chr6_1:54521376-54521395 Msa0888970:three_prime_UTR 50.0%
!! GTTCGGTGTTGGATGGGTTT+GGG - chr6_1:54521377-54521396 Msa0888970:three_prime_UTR 50.0%
!! GTTGTCTGATTTGGAGAGGG+AGG - chr6_1:54521441-54521460 Msa0888970:CDS 50.0%
!! TGTCTGATTTGGAGAGGGAG+GGG - chr6_1:54521443-54521462 Msa0888970:CDS 50.0%
TGAAGCACAGGCACATACAC+CGG + chr6_1:54522478-54522497 None:intergenic 50.0%
!! CATTAGGTGGAATAACGGGC+AGG + chr6_1:54523221-54523240 None:intergenic 50.0%
!! AGACGGGCTGAAACATTAGG+TGG + chr6_1:54523234-54523253 None:intergenic 50.0%
!! CCAAGACGGGCTGAAACATT+AGG + chr6_1:54523237-54523256 None:intergenic 50.0%
CCTAATGTTTCAGCCCGTCT+TGG - chr6_1:54523234-54523253 Msa0888970:intron 50.0%
! AGCCCGTCTTGGAAGTATGA+AGG - chr6_1:54523245-54523264 Msa0888970:intron 50.0%
CTCCAATCAATGTGAGGGAG+AGG - chr6_1:54523776-54523795 Msa0888970:intron 50.0%
CCAATCAATGTGAGGGAGAG+GGG - chr6_1:54523778-54523797 Msa0888970:intron 50.0%
CAATCAATGTGAGGGAGAGG+GGG - chr6_1:54523779-54523798 Msa0888970:intron 50.0%
TCATCGTAGGCGAGTAGAAG+GGG + chr6_1:54524337-54524356 None:intergenic 50.0%
GATCATCGTAGGCGAGTAGA+AGG + chr6_1:54524339-54524358 None:intergenic 50.0%
! TCAGACCAGAAGCGCAGAAT+TGG + chr6_1:54524538-54524557 None:intergenic 50.0%
GCATGGCGATGAGTCAGAAT+TGG - chr6_1:54524692-54524711 Msa0888970:intron 50.0%
CCCGCTGTACCAATTAGTTG+AGG + chr6_1:54524747-54524766 None:intergenic 50.0%
CTGTTAACCTAGGCCCTGTT+TGG - chr6_1:54524877-54524896 Msa0888970:CDS 50.0%
TTAACCTAGGCCCTGTTTGG+AGG - chr6_1:54524880-54524899 Msa0888970:CDS 50.0%
GCAACGAACACCAGTGGGAT+TGG + chr6_1:54521206-54521225 None:intergenic 55.0%
GAAAGGGCAACGAACACCAG+TGG + chr6_1:54521212-54521231 None:intergenic 55.0%
GCAAGTTCGCGTGATAGAGC+AGG + chr6_1:54521328-54521347 None:intergenic 55.0%
ATCACGCGAACTTGCAGACC+CGG - chr6_1:54521333-54521352 Msa0888970:three_prime_UTR 55.0%
!! GCAGACCCGGTTGATGAAAC+GGG - chr6_1:54521346-54521365 Msa0888970:three_prime_UTR 55.0%
!! CAGACCCGGTTGATGAAACG+GGG - chr6_1:54521347-54521366 Msa0888970:three_prime_UTR 55.0%
CAGACCCCGTTTCATCAACC+GGG + chr6_1:54521354-54521373 None:intergenic 55.0%
!! GGGGTCTGTAAGTTCGGTGT+TGG - chr6_1:54521366-54521385 Msa0888970:three_prime_UTR 55.0%
GATTTGGAGAGGGAGGGGAT+TGG - chr6_1:54521448-54521467 Msa0888970:CDS 55.0%
! GTCTGTGCATTGGTGACCGT+TGG - chr6_1:54522177-54522196 Msa0888970:intron 55.0%
GTATCTGTGCCGGACATACG+TGG - chr6_1:54522374-54522393 Msa0888970:intron 55.0%
AAAAACCATGGCGCTGCAGC+TGG - chr6_1:54523159-54523178 Msa0888970:intron 55.0%
CCCCTCTCCCTCACATTGAT+TGG + chr6_1:54523781-54523800 None:intergenic 55.0%
CCGGGATGGACCTGATAAGA+GGG + chr6_1:54524069-54524088 None:intergenic 55.0%
CCCTCTTATCAGGTCCATCC+CGG - chr6_1:54524066-54524085 Msa0888970:intron 55.0%
ACCGGGATGGACCTGATAAG+AGG + chr6_1:54524070-54524089 None:intergenic 55.0%
AGGTCCATCCCGGTACAGTT+CGG - chr6_1:54524076-54524095 Msa0888970:intron 55.0%
TCTACCGAACTGTACCGGGA+TGG + chr6_1:54524083-54524102 None:intergenic 55.0%
CATCGTAGGCGAGTAGAAGG+GGG + chr6_1:54524336-54524355 None:intergenic 55.0%
TCTGACTCATCGCCATGCAG+TGG + chr6_1:54524690-54524709 None:intergenic 55.0%
GCAGCATCCTCAGGGAAAAC+TGG + chr6_1:54524801-54524820 None:intergenic 55.0%
GCTTCCTCCAAACAGGGCCT+AGG + chr6_1:54524887-54524906 None:intergenic 60.0%
! GGAGAGGGAGGGGATTGGTG+AGG - chr6_1:54521453-54521472 Msa0888970:CDS 65.0%
ATGCACCAGCTGCAGCGCCA+TGG + chr6_1:54523167-54523186 None:intergenic 65.0%
GCGGGTTTCGAGCTCGCAAC+TGG - chr6_1:54524762-54524781 Msa0888970:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 54520973 54525294 54520973 ID=Msa0888970;Name=Msa0888970
chr6_1 mRNA 54520973 54525294 54520973 ID=Msa0888970-mRNA-1;Parent=Msa0888970;Name=Msa0888970-mRNA-1;_AED=0.01;_eAED=0.01;_QI=82|1|1|1|1|1|3|425|350
chr6_1 exon 54520973 54521673 54520973 ID=Msa0888970-mRNA-1:exon:10986;Parent=Msa0888970-mRNA-1
chr6_1 exon 54522824 54523114 54522824 ID=Msa0888970-mRNA-1:exon:10985;Parent=Msa0888970-mRNA-1
chr6_1 exon 54524727 54525294 54524727 ID=Msa0888970-mRNA-1:exon:10984;Parent=Msa0888970-mRNA-1
chr6_1 five_prime_UTR 54525213 54525294 54525213 ID=Msa0888970-mRNA-1:five_prime_utr;Parent=Msa0888970-mRNA-1
chr6_1 CDS 54524727 54525212 54524727 ID=Msa0888970-mRNA-1:cds;Parent=Msa0888970-mRNA-1
chr6_1 CDS 54522824 54523114 54522824 ID=Msa0888970-mRNA-1:cds;Parent=Msa0888970-mRNA-1
chr6_1 CDS 54521398 54521673 54521398 ID=Msa0888970-mRNA-1:cds;Parent=Msa0888970-mRNA-1
chr6_1 three_prime_UTR 54520973 54521397 54520973 ID=Msa0888970-mRNA-1:three_prime_utr;Parent=Msa0888970-mRNA-1
Gene Sequence

>Msa0888970

ATGTCATCATCTTCAACAACAACAACCTCAAAAAACCAAAACTCACCACAGCTTCGTAAAGACACAATCTTCAACCGTTGGATTATCTTCTCACCAGCAAGATCAAAACGACCCTCCGATTTCAAATCCAAATCATCATCATCATCATCCAATCCCACTGGTGTTCGTTGCCCTTTCTGTATCGGCAACGAACATCAATGCGCACCCGAGATATTTCGGGTGCCAGATAATAATCCGAACTGGAAGATTCGGGTTATTGAGAATCTTTATCCTGCTCTATCACGCGAACTTGCAGACCCGGTTGATGAAACGGGGTCTGTAAGTTCGGTGTTGGATGGGTTTGGGTTTCATGATGTTGTTATTGAAACTCCGGATCATGATGTGGTGTTGTCTGATTTGGAGAGGGAGGGGATTGGTGAGGTTTTTGTTGCTTATTGTGATAGGATTCGTGAGCTTGGGAAAAGAAACTCTATCAAATATGTTCAGGTGTTTAAAAACCATGGCGCTGCAGCTGGTGCATCAATGAGTCATTCTCATAGTCAAATGATTGCCCTGCCCGTTATTCCACCTAATGTTTCAGCCCGTCTTGGAAGTATGAAGGATTATTTCGATCAGACCGGAAAATGTTCTATTTGTGAAATTCAACGTGAGGATCTAGTGATTGATTCATCGACATACTTCTTTTCATTGGTTCCTTATGCCGCTTCATTTCCTTTTGAGATATGGATTGTTCCTCGATATCACTCTGCTCATTTCCATGAATTGGATGCTGAAAAGGCAGTTGATCTTGGAGGTTTGTTGAAACAAATGCTAAGGAAGATATCATTGCAGTTGAACGATCCGCCGTTCAACTTTATGATTCACACAAGTCCACTGCATGGCGATGAGTCAGAATTGGCATACAATCATTGGTTTATACAGATAGTGCCTCAACTAATTGGTACAGCGGGTTTCGAGCTCGCAACTGGATGTTACATAAATCCAGTTTTCCCTGAGGATGCTGCAAAGATTCTAAGAGAAGTGAATGTTCCAGAGTCGGAACAAAAAAGGTAG
Protein sequence

>Msa0888970

MSSSSTTTTSKNQNSPQLRKDTIFNRWIIFSPARSKRPSDFKSKSSSSSSNPTGVRCPFCIGNEHQCAPEIFRVPDNNPNWKIRVIENLYPALSRELADPVDETGSVSSVLDGFGFHDVVIETPDHDVVLSDLEREGIGEVFVAYCDRIRELGKRNSIKYVQVFKNHGAAAGASMSHSHSQMIALPVIPPNVSARLGSMKDYFDQTGKCSICEIQREDLVIDSSTYFFSLVPYAASFPFEIWIVPRYHSAHFHELDAEKAVDLGGLLKQMLRKISLQLNDPPFNFMIHTSPLHGDESELAYNHWFIQIVPQLIGTAGFELATGCYINPVFPEDAAKILREVNVPESEQKR*