AlfalfaGEDB | Msa0944630

M. sativa cultivar zhongmu-4 / Msa0944630

KEGG: K00965
GO: GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005975 GO:0008150 GO:0008152 GO:0008270 GO:0010646 GO:0010647 GO:0016740 GO:0016772 GO:0016779 GO:0017076 GO:0030554 GO:0032101 GO:0032103 GO:0032104 GO:0032106 GO:0032107 GO:0032109 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043531 GO:0044238 GO:0046872 GO:0046914 GO:0047345 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0065007 GO:0070566 GO:0071704 GO:0080040 GO:0080134 GO:0080135 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF01087.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0944630	XP_013451575.1	95.000	340	16	1	5	343	2	341	0.0	660

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0944630	sp\|Q9FK51\|AGLUP_ARATH	62.500	336	122	3	10	343	17	350	1.84e-161	458

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0032470	Msa0944630	-0.810282	1.245739e-50	-8.615850e-47
Msa0140500	Msa0944630	0.815095	1.101643e-51	-8.615850e-47
Msa0217700	Msa0944630	-0.801153	1.029959e-48	-8.615850e-47
Msa0240900	Msa0944630	-0.810497	1.119290e-50	-8.615850e-47
Msa0257520	Msa0944630	-0.824535	7.659816e-54	-8.615850e-47
Msa0317970	Msa0944630	-0.818602	1.799609e-52	-8.615850e-47
Msa0379690	Msa0944630	-0.802236	6.174274e-49	-8.615850e-47
Msa0484720	Msa0944630	-0.810126	1.346164e-50	-8.615850e-47
Msa0518440	Msa0944630	-0.800617	1.325314e-48	-8.615850e-47
Msa0667790	Msa0944630	-0.804915	1.717476e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0944630	MtrunA17_Chr6g0461471	95.000	340	16	1	5	343	2	341	0.0	660
Msa0944630	MtrunA17_Chr6g0461511	62.824	347	127	1	4	350	23	367	1.53e-158	456

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0944630	AT5G18200.1	62.500	336	122	3	10	343	17	350	1.87e-162	458

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Find 112 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCTATCAAATATGTTC+AGG	0.420894	6_3:+21578135	Msa0944630:CDS
AAAGAAAGAATCTAGTTCAA+AGG	0.558489	6_3:+21577572	None:intergenic
AAAGGAAATGAAGCGGCATA+AGG	0.490064	6_3:-21579974	None:intergenic
AAATAGAGCTTCCTCCAAAC+AGG	0.366855	6_3:-21581503	None:intergenic
AAATGAGCAGAGTGATATCG+AGG	0.670405	6_3:-21580013	None:intergenic
AACGGGCAACGAACACCAGT+GGG	0.626515	6_3:-21577824	None:intergenic
AAGACACAATCTTCAACCGT+TGG	0.537507	6_3:+21577729	Msa0944630:CDS
AAGCTCTTCATGATAGCTTA+TGG	0.338510	6_3:+21581597	Msa0944630:three_prime_UTR
AAGGATTATTTCGATCAGAC+CGG	0.566785	6_3:+21579878	Msa0944630:CDS
AATAGAGCTTCCTCCAAACA+GGG	0.643640	6_3:-21581502	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGGATACTATATATTGCACA+TGG	-	chr6_3:21578630-21578649	None:intergenic	30.0%
GTACACGTTCAATATTATTG+TGG	+	chr6_3:21579154-21579173	Msa0944630:intron	30.0%
TGTGGATCTTGGAATTATTA+TGG	+	chr6_3:21579450-21579469	Msa0944630:intron	30.0%
GCTATAACACTATTGTATAG+TGG	+	chr6_3:21579604-21579623	Msa0944630:intron	30.0%
ACATAATGATGACTTGAAAC+AGG	-	chr6_3:21579719-21579738	None:intergenic	30.0%
TGAAACATTAGGTGGAATAA+CGG	-	chr6_3:21579840-21579859	None:intergenic	30.0%
TATTTGTGAAATTCAACGTG+AGG	+	chr6_3:21579910-21579929	Msa0944630:CDS	30.0%
TATCTCAAAAGGAAATGAAG+CGG	-	chr6_3:21579984-21580003	None:intergenic	30.0%
AAAAAAGACCTAGCATCTAA+GGG	-	chr6_3:21580217-21580236	None:intergenic	30.0%
AAAAAAAGACCTAGCATCTA+AGG	-	chr6_3:21580218-21580237	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	21577586	21581906	21577586	ID=Msa0944630;Name=Msa0944630
chr6_3	mRNA	21577586	21581906	21577586	ID=Msa0944630-mRNA-1;Parent=Msa0944630;Name=Msa0944630-mRNA-1;_AED=0.01;_eAED=0.01;_QI=85\|1\|1\|1\|1\|1\|3\|425\|350
chr6_3	exon	21577586	21578156	21577586	ID=Msa0944630-mRNA-1:exon:6410;Parent=Msa0944630-mRNA-1
chr6_3	exon	21579767	21580057	21579767	ID=Msa0944630-mRNA-1:exon:6411;Parent=Msa0944630-mRNA-1
chr6_3	exon	21581206	21581906	21581206	ID=Msa0944630-mRNA-1:exon:6412;Parent=Msa0944630-mRNA-1
chr6_3	five_prime_UTR	21577586	21577670	21577586	ID=Msa0944630-mRNA-1:five_prime_utr;Parent=Msa0944630-mRNA-1
chr6_3	CDS	21577671	21578156	21577671	ID=Msa0944630-mRNA-1:cds;Parent=Msa0944630-mRNA-1
chr6_3	CDS	21579767	21580057	21579767	ID=Msa0944630-mRNA-1:cds;Parent=Msa0944630-mRNA-1
chr6_3	CDS	21581206	21581481	21581206	ID=Msa0944630-mRNA-1:cds;Parent=Msa0944630-mRNA-1
chr6_3	three_prime_UTR	21581482	21581906	21581482	ID=Msa0944630-mRNA-1:three_prime_utr;Parent=Msa0944630-mRNA-1

Gene Sequence

>Msa0944630

ATGTCATCATCTTCAACAACAACAACCTCAAAAAACCAAAACTCACCACAGCTTCGTAAAGACACAATCTTCAACCGTTGGATTATCTTCTCACCAGCAAGATCAAAACGACCCTCCGATTTCAAATCCAAATCATCATCATCATCATCCAATCCCACTGGTGTTCGTTGCCCGTTCTGTATCGGCAACGAACACCAATGTGCACCCGAGATATTTCGGGTGCCAGCTAATAACCCGAACTGGAAAATTCGGGTTATTCAGAATCTTTACCCTGCTCTTTCACGCGAACTTGCGGACCCGGTTGATGAAACGGGGTCTGTAAGTTCGGTGTTGGATGGGTTTGGGTTTCATGATGTTGTTATTGAAACTCCGGATCATGATGTGGTGTTGTCTGATTTGGAGAGGGAGGGGATTGGTGAGGTTTTTGTTGCTTATTGTGATAGGATTCGTGAGCTTGGGAAAAGAAACTCTATCAAATATGTTCAGGTGTTTAAAAACCATGGCGCTGCAGCTGGTGCATCAATGAGTCATTCTCATAGTCAAATGATTGCCCTGCCCGTTATTCCACCTAATGTTTCAGCCCGTCTTGGAAGTATGAAGGATTATTTCGATCAGACCGGAAAATGTTCTATTTGTGAAATTCAACGTGAGGATCTAGTGATTGATTCATCGACATACTTCTTTTCATTGGTTCCTTATGCCGCTTCATTTCCTTTTGAGATATGGATTGTTCCTCGATATCACTCTGCTCATTTCCATGAATTGGATGCTGAAAAGGCAGTTGATCTTGGAGGTTTGTTGAAACAAATGCTAAGGAAGATATCATTGCAGTTGAACGATCCGCCGTTCAACTTTATGATTCACACAAGTCCACTGCATGGCGATGAGTCAGAATTGGCATACAATCATTGGTTTATACAGATAGTGCCTCAACTAATTGGTACAGCGGGTTTCGAGCTCGCAACTGGATGTTACATAAATCCAGTTTTCCCTGAGGATGCTGCAAAGATTCTAAGAGAAGTGAATGTTCCAGAGTCGGAACAAAAAAGGTAG

Protein sequence

>Msa0944630

MSSSSTTTTSKNQNSPQLRKDTIFNRWIIFSPARSKRPSDFKSKSSSSSSNPTGVRCPFCIGNEHQCAPEIFRVPANNPNWKIRVIQNLYPALSRELADPVDETGSVSSVLDGFGFHDVVIETPDHDVVLSDLEREGIGEVFVAYCDRIRELGKRNSIKYVQVFKNHGAAAGASMSHSHSQMIALPVIPPNVSARLGSMKDYFDQTGKCSICEIQREDLVIDSSTYFFSLVPYAASFPFEIWIVPRYHSAHFHELDAEKAVDLGGLLKQMLRKISLQLNDPPFNFMIHTSPLHGDESELAYNHWFIQIVPQLIGTAGFELATGCYINPVFPEDAAKILREVNVPESEQKR*