AlfalfaGEDB | Msa0980920

M. sativa cultivar zhongmu-4 / Msa0980920

KEGG: K00965
GO: GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005975 GO:0008150 GO:0008152 GO:0008270 GO:0010646 GO:0010647 GO:0016740 GO:0016772 GO:0016779 GO:0017076 GO:0030554 GO:0032101 GO:0032103 GO:0032104 GO:0032106 GO:0032107 GO:0032109 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043531 GO:0044238 GO:0046872 GO:0046914 GO:0047345 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0065007 GO:0070566 GO:0071704 GO:0080040 GO:0080134 GO:0080135 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF01087.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0980920	XP_013451575.1	94.706	340	16	1	6	343	2	341	0.0	660

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0980920	sp\|Q9FK51\|AGLUP_ARATH	63.284	335	120	2	11	343	17	350	4.23e-165	467

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0980920	A0A072U914	94.706	340	16	1	6	343	2	341	0.0	660

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0140500	Msa0980920	0.817092	3.945765e-52	-8.615850e-47
Msa0240900	Msa0980920	-0.810432	1.156338e-50	-8.615850e-47
Msa0257520	Msa0980920	-0.801989	6.938630e-49	-8.615850e-47
Msa0317970	Msa0980920	-0.812262	4.632807e-51	-8.615850e-47
Msa0381610	Msa0980920	0.820157	7.955215e-53	-8.615850e-47
Msa0510930	Msa0980920	-0.805437	1.335637e-49	-8.615850e-47
Msa0521670	Msa0980920	-0.808326	3.272575e-50	-8.615850e-47
Msa0741440	Msa0980920	-0.801448	8.962115e-49	-8.615850e-47
Msa0790820	Msa0980920	0.801348	9.392700e-49	-8.615850e-47
Msa0822500	Msa0980920	-0.816933	4.283296e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0980920	MtrunA17_Chr6g0461471	94.706	340	16	1	6	343	2	341	0.0	660
Msa0980920	MtrunA17_Chr6g0461511	63.689	347	123	2	5	350	23	367	2.68e-159	457

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0980920	AT5G18200.1	63.284	335	120	2	11	343	17	350	4.30e-166	467

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Find 110 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCTATCAAATATGTTC+AGG	0.420894	6_4:+19575358	Msa0980920:CDS
AAAGAAAGAATCTAGTTCAA+AGG	0.558489	6_4:+19574789	None:intergenic
AAAGGAAATGAAGCGGCATA+AGG	0.490064	6_4:-19577199	None:intergenic
AAAGGGCAACGAACACCAGT+GGG	0.646174	6_4:-19575047	None:intergenic
AAATAGAGCTTCCTCCAAAC+AGG	0.366855	6_4:-19578722	None:intergenic
AAATGAGCAGAGTGATATCG+AGG	0.670405	6_4:-19577238	None:intergenic
AAGACACAATCTTCAACCGT+TGG	0.537507	6_4:+19574955	Msa0980920:CDS
AAGCTCTTCATGATAGCTTA+TGG	0.338510	6_4:+19578816	Msa0980920:three_prime_UTR
AAGGATTATTTCGATCAGAC+CGG	0.566785	6_4:+19577103	Msa0980920:CDS
AATAGAGCTTCCTCCAAACA+GGG	0.643640	6_4:-19578721	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAACCCGAATTGGAAAATT+CGG	+	chr6_4:19575123-19575142	Msa0980920:CDS	30.0%
TGGATACTATATATTGCACA+TGG	-	chr6_4:19575856-19575875	None:intergenic	30.0%
GTACACGTTCAATATTATTG+TGG	+	chr6_4:19576380-19576399	Msa0980920:intron	30.0%
TATTCTGAATCACATCTAAG+AGG	-	chr6_4:19576654-19576673	None:intergenic	30.0%
TGTGGATCTTGGAATTATTA+TGG	+	chr6_4:19576676-19576695	Msa0980920:intron	30.0%
GCTATAACACTATTGTATAG+TGG	+	chr6_4:19576829-19576848	Msa0980920:intron	30.0%
ACATAATGATGACTTGAAAC+AGG	-	chr6_4:19576944-19576963	None:intergenic	30.0%
TGAAACATTAGGTGGAATAA+CGG	-	chr6_4:19577065-19577084	None:intergenic	30.0%
TATTTGTGAAATTCAACGTG+AGG	+	chr6_4:19577135-19577154	Msa0980920:CDS	30.0%
TATCTCAAAAGGAAATGAAG+CGG	-	chr6_4:19577209-19577228	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	19574803	19579125	19574803	ID=Msa0980920;Name=Msa0980920
chr6_4	mRNA	19574803	19579125	19574803	ID=Msa0980920-mRNA-1;Parent=Msa0980920;Name=Msa0980920-mRNA-1;_AED=0.01;_eAED=0.01;_QI=91\|1\|1\|1\|1\|1\|3\|425\|350
chr6_4	exon	19574803	19575379	19574803	ID=Msa0980920-mRNA-1:exon:6080;Parent=Msa0980920-mRNA-1
chr6_4	exon	19576992	19577282	19576992	ID=Msa0980920-mRNA-1:exon:6081;Parent=Msa0980920-mRNA-1
chr6_4	exon	19578425	19579125	19578425	ID=Msa0980920-mRNA-1:exon:6082;Parent=Msa0980920-mRNA-1
chr6_4	five_prime_UTR	19574803	19574893	19574803	ID=Msa0980920-mRNA-1:five_prime_utr;Parent=Msa0980920-mRNA-1
chr6_4	CDS	19574894	19575379	19574894	ID=Msa0980920-mRNA-1:cds;Parent=Msa0980920-mRNA-1
chr6_4	CDS	19576992	19577282	19576992	ID=Msa0980920-mRNA-1:cds;Parent=Msa0980920-mRNA-1
chr6_4	CDS	19578425	19578700	19578425	ID=Msa0980920-mRNA-1:cds;Parent=Msa0980920-mRNA-1
chr6_4	three_prime_UTR	19578701	19579125	19578701	ID=Msa0980920-mRNA-1:three_prime_utr;Parent=Msa0980920-mRNA-1

Gene Sequence

>Msa0980920

ATGTCATCATCTTCAACAACAACAACAACCTCAAAAAACCAAAACTCACCACAACTTCGTAAAGACACAATCTTCAACCGTTGGATTATCTTCTCACCAGCAAGATCAAAACGACCCTCCGATTTCAAATCCAAATCATCATCATCATCCAATCCCACTGGTGTTCGTTGCCCTTTCTGTATCGGCAACGAACACCAATGCGCACCCGAGATATTTCGGGTGCCAGATAATAACCCGAATTGGAAAATTCGGGTTATTGAGAATCTTTACCCTGCTCTTTCACGCGAACTTGCAGACCCTGATGATGAAACGGGGTCTGTAAGTTCAGTGTTGGATGGGTTTGGGTTTCATGATGTTGTTATTGAAACTCCGGATCATGATGTGGTGTTGTCTGATTTGGAGAGGGAGGGGATTGGTGAGGTTTTTGTTGCTTATTGTGATAGGATTCGTGAGCTTGGGAAAAGAAACTCTATCAAATATGTTCAGGTGTTTAAAAACCATGGCGCTGCAGCTGGTGCATCAATGAGTCATTCTCATAGTCAAATGATTGCCCTGCCCGTTATTCCACCTAATGTTTCAGCCCGTCTTGGAAGTATGAAGGATTATTTCGATCAGACCGGAAAATGTTCTATTTGTGAAATTCAACGTGAGGATCTAGTGATTGATTCATCGACATACTTCTTTTCATTGGTTCCTTATGCCGCTTCATTTCCTTTTGAGATATGGATTGTTCCTCGATATCACTCTGCTCATTTCCATGAATTGGATGCTGAAAAGGCAGTTGATCTTGGAGGTTTGTTGAAACAAATGCTAAGGAAGATATCATTGCAGTTGAACGATCCGCCGTTCAACTTTATGATTCACACAAGTCCACTGCATGGCGATGAGTCAGAATTGGCATACAATCATTGGTTTATACAGATAGTGCCTCAACTAATTGGTACAGCGGGTTTCGAGCTCGCAACTGGATGTTACATAAATCCAGTTTTCCCTGAGGATGCTGCAAAGATTCTAAGAGAAGTGAATGTTCCAGAGTCGGAACAAAAAAGGTAG

Protein sequence

>Msa0980920

MSSSSTTTTTSKNQNSPQLRKDTIFNRWIIFSPARSKRPSDFKSKSSSSSNPTGVRCPFCIGNEHQCAPEIFRVPDNNPNWKIRVIENLYPALSRELADPDDETGSVSSVLDGFGFHDVVIETPDHDVVLSDLEREGIGEVFVAYCDRIRELGKRNSIKYVQVFKNHGAAAGASMSHSHSQMIALPVIPPNVSARLGSMKDYFDQTGKCSICEIQREDLVIDSSTYFFSLVPYAASFPFEIWIVPRYHSAHFHELDAEKAVDLGGLLKQMLRKISLQLNDPPFNFMIHTSPLHGDESELAYNHWFIQIVPQLIGTAGFELATGCYINPVFPEDAAKILREVNVPESEQKR*