Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0889190 | XP_020206700.1 | 69.355 | 186 | 15 | 3 | 289 | 432 | 244 | 429 | 6.26e-70 | 247 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0889190 | sp|Q8L6Y1|UBP14_ARATH | 61.798 | 178 | 32 | 3 | 289 | 430 | 239 | 416 | 2.70e-59 | 210 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0889190 | A0A151QXE0 | 69.355 | 186 | 15 | 3 | 289 | 432 | 244 | 429 | 2.99e-70 | 247 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0401230 | Msa0889190 | 0.871676 | 5.701171e-67 | -8.615850e-47 |
| Msa0889190 | Msa1185240 | -0.804972 | 1.671086e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0889190 | MtrunA17_Chr1g0211411 | 83.333 | 132 | 14 | 2 | 146 | 272 | 51 | 179 | 1.54e-69 | 220 |
| Msa0889190 | MtrunA17_Chr2g0318671 | 62.366 | 186 | 28 | 3 | 289 | 432 | 239 | 424 | 7.60e-65 | 223 |
| Msa0889190 | MtrunA17_Chr5g0410931 | 92.079 | 101 | 8 | 0 | 1 | 101 | 1 | 101 | 1.76e-56 | 183 |
| Msa0889190 | MtrunA17_Chr5g0410951 | 92.079 | 101 | 8 | 0 | 1 | 101 | 1 | 101 | 1.76e-56 | 183 |
| Msa0889190 | MtrunA17_Chr8g0383851 | 92.079 | 101 | 8 | 0 | 1 | 101 | 1 | 101 | 1.76e-56 | 183 |
| Msa0889190 | MtrunA17_Chr8g0383781 | 92.079 | 101 | 8 | 0 | 1 | 101 | 1 | 101 | 1.76e-56 | 183 |
| Msa0889190 | MtrunA17_Chr8g0390361 | 92.079 | 101 | 8 | 0 | 1 | 101 | 1 | 101 | 1.76e-56 | 183 |
| Msa0889190 | MtrunA17_Chr2g0295191 | 92.079 | 101 | 8 | 0 | 1 | 101 | 1 | 101 | 1.76e-56 | 183 |
| Msa0889190 | MtrunA17_Chr7g0237661 | 92.079 | 101 | 8 | 0 | 1 | 101 | 1 | 101 | 1.76e-56 | 183 |
| Msa0889190 | MtrunA17_Chr4g0033041 | 92.079 | 101 | 8 | 0 | 1 | 101 | 1 | 101 | 1.76e-56 | 183 |
| Msa0889190 | MtrunA17_Chr7g0218971 | 92.079 | 101 | 8 | 0 | 1 | 101 | 1 | 101 | 1.76e-56 | 183 |
| Msa0889190 | MtrunA17_Chr4g0046301 | 92.079 | 101 | 8 | 0 | 1 | 101 | 1 | 101 | 1.76e-56 | 183 |
| Msa0889190 | MtrunA17_Chr8g0364801 | 92.079 | 101 | 8 | 0 | 1 | 101 | 1 | 101 | 1.76e-56 | 183 |
| Msa0889190 | MtrunA17_Chr4g0054151 | 88.119 | 101 | 12 | 0 | 1 | 101 | 4 | 104 | 5.90e-52 | 171 |
| Msa0889190 | MtrunA17_Chr4g0054161 | 88.119 | 101 | 12 | 0 | 1 | 101 | 1 | 101 | 6.50e-52 | 171 |
| Msa0889190 | MtrunA17_Chr8g0363741 | 88.119 | 101 | 12 | 0 | 1 | 101 | 1 | 101 | 6.50e-52 | 171 |
| Msa0889190 | MtrunA17_Chr1g0156021 | 88.119 | 101 | 12 | 0 | 1 | 101 | 1 | 101 | 6.50e-52 | 171 |
| Msa0889190 | MtrunA17_Chr8g0388121 | 87.129 | 101 | 13 | 0 | 1 | 101 | 1 | 101 | 1.92e-51 | 170 |
| Msa0889190 | MtrunA17_Chr2g0319141 | 86.316 | 95 | 13 | 0 | 1 | 95 | 1 | 95 | 1.45e-48 | 162 |
| Msa0889190 | MtrunA17_Chr2g0319151 | 86.316 | 95 | 13 | 0 | 1 | 95 | 1 | 95 | 1.45e-48 | 162 |
| Msa0889190 | MtrunA17_Chr2g0319131 | 74.775 | 111 | 18 | 1 | 1 | 101 | 1 | 111 | 4.28e-44 | 151 |
| Msa0889190 | MtrunA17_Chr2g0319121 | 72.549 | 102 | 26 | 2 | 1 | 101 | 1 | 101 | 2.18e-38 | 135 |
| Msa0889190 | MtrunA17_Chr7g0218961 | 88.732 | 71 | 8 | 0 | 25 | 95 | 2 | 72 | 1.01e-36 | 130 |
| Msa0889190 | MtrunA17_Chr7g0240791 | 96.970 | 66 | 2 | 0 | 1 | 66 | 1 | 66 | 2.01e-34 | 125 |
| Msa0889190 | MtrunA17_Chr5g0407311 | 65.263 | 95 | 30 | 2 | 1 | 95 | 1 | 92 | 1.08e-27 | 106 |
| Msa0889190 | MtrunA17_Chr7g0222991 | 62.766 | 94 | 34 | 1 | 1 | 94 | 10 | 102 | 4.80e-27 | 105 |
| Msa0889190 | MtrunA17_Chr7g0223001 | 48.148 | 108 | 47 | 5 | 1 | 102 | 10 | 114 | 1.93e-16 | 76.6 |
| Msa0889190 | MtrunA17_Chr8g0347231 | 39.216 | 102 | 52 | 3 | 1 | 101 | 1 | 93 | 9.86e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0889190 | AT3G20630.1 | 61.798 | 178 | 32 | 3 | 289 | 430 | 239 | 416 | 2.74e-60 | 210 |
| Msa0889190 | AT1G09200.1 | 91.089 | 101 | 9 | 0 | 1 | 101 | 1 | 101 | 1.31e-53 | 176 |
| Msa0889190 | AT5G65360.1 | 91.089 | 101 | 9 | 0 | 1 | 101 | 1 | 101 | 1.31e-53 | 176 |
| Msa0889190 | AT5G10390.1 | 91.089 | 101 | 9 | 0 | 1 | 101 | 1 | 101 | 1.31e-53 | 176 |
| Msa0889190 | AT5G10400.1 | 91.089 | 101 | 9 | 0 | 1 | 101 | 1 | 101 | 1.31e-53 | 176 |
| Msa0889190 | AT3G27360.1 | 91.089 | 101 | 9 | 0 | 1 | 101 | 1 | 101 | 1.31e-53 | 176 |
| Msa0889190 | AT4G40030.2 | 88.119 | 101 | 12 | 0 | 1 | 101 | 29 | 129 | 6.17e-53 | 175 |
| Msa0889190 | AT4G40030.3 | 88.119 | 101 | 12 | 0 | 1 | 101 | 1 | 101 | 8.97e-52 | 171 |
| Msa0889190 | AT4G40030.1 | 88.119 | 101 | 12 | 0 | 1 | 101 | 1 | 101 | 8.97e-52 | 171 |
| Msa0889190 | AT4G40030.4 | 88.119 | 101 | 12 | 0 | 1 | 101 | 1 | 101 | 8.97e-52 | 171 |
| Msa0889190 | AT5G10980.1 | 88.119 | 101 | 12 | 0 | 1 | 101 | 1 | 101 | 8.97e-52 | 171 |
| Msa0889190 | AT4G40040.2 | 88.119 | 101 | 12 | 0 | 1 | 101 | 1 | 101 | 8.97e-52 | 171 |
| Msa0889190 | AT4G40040.3 | 88.119 | 101 | 12 | 0 | 1 | 101 | 1 | 101 | 8.97e-52 | 171 |
| Msa0889190 | AT4G40040.1 | 88.119 | 101 | 12 | 0 | 1 | 101 | 1 | 101 | 8.97e-52 | 171 |
| Msa0889190 | AT5G65350.1 | 86.139 | 101 | 14 | 0 | 1 | 101 | 1 | 101 | 1.65e-50 | 168 |
| Msa0889190 | AT1G75600.1 | 84.158 | 101 | 16 | 0 | 1 | 101 | 1 | 101 | 7.31e-49 | 164 |
| Msa0889190 | AT1G13370.1 | 85.149 | 101 | 15 | 0 | 1 | 101 | 1 | 101 | 3.67e-48 | 162 |
| Msa0889190 | AT1G19890.1 | 79.412 | 102 | 20 | 1 | 1 | 101 | 1 | 102 | 6.55e-45 | 153 |
| Msa0889190 | AT5G27280.1 | 68.571 | 105 | 28 | 1 | 168 | 272 | 57 | 156 | 1.45e-41 | 147 |
| Msa0889190 | AT5G12910.1 | 65.263 | 95 | 28 | 1 | 1 | 95 | 1 | 90 | 1.12e-31 | 118 |
Find 136 sgRNAs with CRISPR-Local
Find 331 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACACTTGAAATGAAAATT+TGG | 0.141025 | 6_1:-56201687 | None:intergenic |
| TCAAATTTAGGTACCATATT+TGG | 0.197714 | 6_1:+56207037 | Msa0889190:three_prime_UTR |
| TTGGCGCGTGGTCTACTTTC+TGG | 0.199366 | 6_1:+56206007 | Msa0889190:CDS |
| ATTACAGCTTTGAACATATT+TGG | 0.200839 | 6_1:-56206306 | None:intergenic |
| CTTTGGTGGCGAGCTGCTTC+CGG | 0.226952 | 6_1:-56201890 | None:intergenic |
| TTCATCTGACTTTGCCCATT+TGG | 0.245081 | 6_1:+56201645 | Msa0889190:five_prime_UTR |
| ATTTGTTGACAGGACAAAAT+TGG | 0.248332 | 6_1:+56205988 | Msa0889190:intron |
| TTTGGTGGCGAGCTGCTTCC+GGG | 0.248437 | 6_1:-56201889 | None:intergenic |
| AGCTGATTTCCGGGCGGCTT+TGG | 0.278168 | 6_1:-56201907 | None:intergenic |
| CAGTCGCCAGAGCTGATTTC+CGG | 0.283620 | 6_1:-56201917 | None:intergenic |
| TAAATTTATAAAACCAAATA+TGG | 0.295857 | 6_1:-56207050 | None:intergenic |
| CAGATGAAGAATTGAATAAT+TGG | 0.297458 | 6_1:-56201630 | None:intergenic |
| AACATAACTAGATCAAATTT+AGG | 0.301558 | 6_1:+56207025 | Msa0889190:three_prime_UTR |
| AGAGGATGGACAACAGGTTC+TGG | 0.304476 | 6_1:+56202541 | Msa0889190:CDS |
| TGTACTGTTCCGATTGTTGC+TGG | 0.325102 | 6_1:-56203794 | None:intergenic |
| TCTCTCAAAGCAACTGTTCC+AGG | 0.333816 | 6_1:-56201969 | None:intergenic |
| TTACAATTTAGTGTTAAATC+TGG | 0.334140 | 6_1:-56206730 | None:intergenic |
| ACACTACAAGAAATCTAATA+TGG | 0.352207 | 6_1:-56207146 | None:intergenic |
| GTATGGTTCAGATCTGAAAA+TGG | 0.353006 | 6_1:-56201743 | None:intergenic |
| GCTTCTTCACTGTTCCGATT+TGG | 0.360640 | 6_1:-56203820 | None:intergenic |
| GATTGGTCAACATTGGAAAT+AGG | 0.374998 | 6_1:+56204993 | Msa0889190:CDS |
| GAGCGGAAACGGCACTGCTC+TGG | 0.378623 | 6_1:-56202094 | None:intergenic |
| GTTCCGATTGTTGCTGGAAT+CGG | 0.383649 | 6_1:-56203788 | None:intergenic |
| TCAGGATGGGGCGATGGGGC+TGG | 0.388308 | 6_1:+56202498 | Msa0889190:intron |
| AGTCGCCAGAGCTGATTTCC+GGG | 0.389485 | 6_1:-56201916 | None:intergenic |
| TCCACATTTAGCACAACATT+TGG | 0.402176 | 6_1:+56204102 | Msa0889190:CDS |
| GTGGGATCAGGATGGGGCGA+TGG | 0.402200 | 6_1:+56202492 | Msa0889190:intron |
| TGGCGCGTGGTCTACTTTCT+GGG | 0.403666 | 6_1:+56206008 | Msa0889190:CDS |
| TGGGATCAGGATGGGGCGAT+GGG | 0.403846 | 6_1:+56202493 | Msa0889190:intron |
| CAAATGCCTTCTTTAGACTT+TGG | 0.406071 | 6_1:-56205249 | None:intergenic |
| CGGAAATCAGCTCTGGCGAC+TGG | 0.414881 | 6_1:+56201918 | Msa0889190:CDS |
| AGTTGAAAGAGGAGAGTGAC+AGG | 0.430076 | 6_1:+56206969 | Msa0889190:three_prime_UTR |
| AAGGTTGAAGTTGAGTTCGT+TGG | 0.430732 | 6_1:-56202324 | None:intergenic |
| TGATTTCCGGGCGGCTTTGG+TGG | 0.433306 | 6_1:-56201904 | None:intergenic |
| TGCCGAATAGATGAAAATTC+AGG | 0.434190 | 6_1:-56206342 | None:intergenic |
| TTGCAGGTTGCTAAGGAGAT+TGG | 0.434372 | 6_1:+56206603 | Msa0889190:intron |
| GTGCCATCGAGAGAAGCTTC+TGG | 0.439702 | 6_1:-56201824 | None:intergenic |
| ATACTCTGTTCCTGCATTCA+AGG | 0.442838 | 6_1:+56206033 | Msa0889190:CDS |
| ATGGGTACAAAGAAGCCAAA+TGG | 0.443282 | 6_1:-56201660 | None:intergenic |
| TTCTTGTTGAAGAGCGGAAA+CGG | 0.456061 | 6_1:-56202105 | None:intergenic |
| ACTCAACTTCAACCTTTCTC+AGG | 0.458754 | 6_1:+56202331 | Msa0889190:CDS |
| GACGTTGGAATGGAAGTTTA+CGG | 0.460970 | 6_1:-56202028 | None:intergenic |
| CTGTGACTGTGATTGTGAAA+TGG | 0.464093 | 6_1:-56201785 | None:intergenic |
| TGGAATCAAATTCAAGAAAG+TGG | 0.465747 | 6_1:+56204932 | Msa0889190:CDS |
| AGCCGCCCGGAAATCAGCTC+TGG | 0.469829 | 6_1:+56201911 | Msa0889190:CDS |
| ACGATAGAGAGGAAGAGATA+AGG | 0.473893 | 6_1:-56201564 | None:intergenic |
| TGGACCTGGTTATACAGGAT+TGG | 0.474300 | 6_1:+56204976 | Msa0889190:CDS |
| GAGGATGGACAACAGGTTCT+GGG | 0.476565 | 6_1:+56202542 | Msa0889190:CDS |
| TTAGCAAGGATGGCCAATCT+AGG | 0.479871 | 6_1:+56202590 | Msa0889190:CDS |
| AATAATAGTAAAATTAATGA+TGG | 0.479957 | 6_1:-56202237 | None:intergenic |
| CCACCGGCGGCAAGGCTCCC+CGG | 0.480154 | 6_1:+56201871 | Msa0889190:CDS |
| ATTTCTATTGCAGGTTGCTA+AGG | 0.481522 | 6_1:+56206596 | Msa0889190:intron |
| ACAGGTAGAGGATGGACAAC+AGG | 0.485934 | 6_1:+56202535 | Msa0889190:CDS |
| AGGTCTACAGTTGGATCAGC+AGG | 0.486223 | 6_1:-56205280 | None:intergenic |
| AGATGAAAATTCAGGATGGC+TGG | 0.486516 | 6_1:-56206334 | None:intergenic |
| TTTGGCTTCTTTGTACCCAT+CGG | 0.486540 | 6_1:+56201663 | Msa0889190:five_prime_UTR |
| ATTAGAAACAAGAAGGAATA+CGG | 0.486941 | 6_1:+56206283 | Msa0889190:intron |
| ACACTTACAACTGCATATTC+AGG | 0.488171 | 6_1:-56205300 | None:intergenic |
| TCGCAAGTCCACCGGCGGCA+AGG | 0.488583 | 6_1:+56201863 | Msa0889190:CDS |
| AGCTCGCCACCAAAGCCGCC+CGG | 0.493101 | 6_1:+56201898 | Msa0889190:CDS |
| GGGATCAGGATGGGGCGATG+GGG | 0.493525 | 6_1:+56202494 | Msa0889190:intron |
| AATGGAGAAACAACGATTAG+TGG | 0.502582 | 6_1:-56202357 | None:intergenic |
| GAAATGAAAATTTGGACCGA+TGG | 0.502813 | 6_1:-56201679 | None:intergenic |
| CTAGGCTCCTACTGTTGGTA+AGG | 0.504325 | 6_1:+56206940 | Msa0889190:three_prime_UTR |
| GTTCCTGCTGTTAGCAAGGA+TGG | 0.505839 | 6_1:+56202580 | Msa0889190:CDS |
| CTTCCGGGGAGCCTTGCCGC+CGG | 0.507682 | 6_1:-56201874 | None:intergenic |
| AAATATTGTCAGTCCTAGAT+TGG | 0.508600 | 6_1:-56202603 | None:intergenic |
| TGCATATTCAGGTCTACAGT+TGG | 0.508855 | 6_1:-56205289 | None:intergenic |
| TCCAGAGGATAATAGTGTCT+TGG | 0.510277 | 6_1:+56204078 | Msa0889190:CDS |
| GATTGATCGAGAAGAGAATA+CGG | 0.514542 | 6_1:-56202190 | None:intergenic |
| TCTAGTTCCTGCTGTTAGCA+AGG | 0.515650 | 6_1:+56202576 | Msa0889190:CDS |
| CTGGTGTTGAGTGCAGCAAC+AGG | 0.516115 | 6_1:+56202517 | Msa0889190:CDS |
| TCTGGATAAGTGACCAGAGC+TGG | 0.518009 | 6_1:-56206712 | None:intergenic |
| TTGAGTGCAGCAACAGGTAG+AGG | 0.519099 | 6_1:+56202523 | Msa0889190:CDS |
| TATACAGGATTGGTCAACAT+TGG | 0.520849 | 6_1:+56204986 | Msa0889190:CDS |
| TGGGTACAAAGAAGCCAAAT+GGG | 0.521154 | 6_1:-56201659 | None:intergenic |
| TCCAAGACACTATTATCCTC+TGG | 0.521863 | 6_1:-56204079 | None:intergenic |
| GGAACAGTACAGAACCAAAT+CGG | 0.522105 | 6_1:+56203806 | Msa0889190:CDS |
| GGATCACGACAAACCAGCTC+TGG | 0.523313 | 6_1:+56206699 | Msa0889190:three_prime_UTR |
| TTATGTATTTGATTTGATGA+CGG | 0.523469 | 6_1:+56207070 | Msa0889190:three_prime_UTR |
| GATCTAGTTATGTTAAACTC+TGG | 0.527506 | 6_1:-56207016 | None:intergenic |
| AGGCCGATTCCAGCAACAAT+CGG | 0.528355 | 6_1:+56203785 | Msa0889190:intron |
| AGAGGGTAGACGAAAGTGGA+AGG | 0.528636 | 6_1:-56202158 | None:intergenic |
| TAAGGCAGAGAAGTTGAAAG+AGG | 0.537111 | 6_1:+56206958 | Msa0889190:three_prime_UTR |
| TGGCCATCCTTGCTAACAGC+AGG | 0.539363 | 6_1:-56202583 | None:intergenic |
| ACAACAGGTTCTGGGATGGA+AGG | 0.540621 | 6_1:+56202550 | Msa0889190:CDS |
| AATCCTCATGCTTACACTGA+TGG | 0.541011 | 6_1:+56202724 | Msa0889190:CDS |
| CACTCTTCACTAAATCTCGC+AGG | 0.541282 | 6_1:+56202641 | Msa0889190:CDS |
| AAATGAAAATTTGGACCGAT+GGG | 0.544221 | 6_1:-56201678 | None:intergenic |
| TATGGTTCAGATCTGAAAAT+GGG | 0.544665 | 6_1:-56201742 | None:intergenic |
| TAGAAGAGGGTAGACGAAAG+TGG | 0.546563 | 6_1:-56202162 | None:intergenic |
| ATGAAGAATTGAATAATTGG+AGG | 0.548246 | 6_1:-56201627 | None:intergenic |
| CTTGAACCAAAGTCTAAAGA+AGG | 0.548290 | 6_1:+56205243 | Msa0889190:CDS |
| CCGGGGAGCCTTGCCGCCGG+TGG | 0.548377 | 6_1:-56201871 | None:intergenic |
| GGACTTGCGAGCAGTCTGCT+TGG | 0.551577 | 6_1:-56201850 | None:intergenic |
| TTTGGGAACAACTCTAGTTG+TGG | 0.551730 | 6_1:+56206652 | Msa0889190:exon |
| ATGGAGAAACAACGATTAGT+GGG | 0.553949 | 6_1:-56202356 | None:intergenic |
| CTTCCAGAAGCTTCTCTCGA+TGG | 0.554027 | 6_1:+56201821 | Msa0889190:exon |
| CAACAGGTTCTGGGATGGAA+GGG | 0.554555 | 6_1:+56202551 | Msa0889190:CDS |
| TTCAAACATTAGAAACAAGA+AGG | 0.556304 | 6_1:+56206276 | Msa0889190:intron |
| TAGGACTAGGCTCCTACTGT+TGG | 0.557420 | 6_1:+56206935 | Msa0889190:intron |
| GATTAGTGGGAACCTGAGAA+AGG | 0.560549 | 6_1:-56202343 | None:intergenic |
| CAGACTGCTCGCAAGTCCAC+CGG | 0.562052 | 6_1:+56201855 | Msa0889190:CDS |
| TCACTAAATCTCGCAGGCGA+AGG | 0.566237 | 6_1:+56202647 | Msa0889190:CDS |
| GAGATACATACCTTGAATGC+AGG | 0.569384 | 6_1:-56206043 | None:intergenic |
| TTGGTGGCGAGCTGCTTCCG+GGG | 0.573559 | 6_1:-56201888 | None:intergenic |
| GAAGAGTGACCATGGGAAAG+TGG | 0.574914 | 6_1:-56202626 | None:intergenic |
| ACAATATTTCCACTTTCCCA+TGG | 0.577693 | 6_1:+56202617 | Msa0889190:CDS |
| TTGCTAACAGCAGGAACTAG+AGG | 0.586920 | 6_1:-56202574 | None:intergenic |
| TCACGAACAAGACGTTGGAA+TGG | 0.591294 | 6_1:-56202038 | None:intergenic |
| GTGCAGCAACAGGTAGAGGA+TGG | 0.602472 | 6_1:+56202527 | Msa0889190:CDS |
| GCCAAATGTTGTGCTAAATG+TGG | 0.603092 | 6_1:-56204103 | None:intergenic |
| ATTTAGTGAAGAGTGACCAT+GGG | 0.605907 | 6_1:-56202633 | None:intergenic |
| ATCGGAACAGTGAAGAAGCA+AGG | 0.606962 | 6_1:+56203824 | Msa0889190:CDS |
| ATGGACAACAGGTTCTGGGA+TGG | 0.609246 | 6_1:+56202546 | Msa0889190:CDS |
| GATTTAGTGAAGAGTGACCA+TGG | 0.612252 | 6_1:-56202634 | None:intergenic |
| TAATAGCGCGAGTAGTTCGC+TGG | 0.613634 | 6_1:-56202702 | None:intergenic |
| AGAATACGGACGCTTAGAAG+AGG | 0.614308 | 6_1:-56202176 | None:intergenic |
| CAATTTCACGAACAAGACGT+TGG | 0.614742 | 6_1:-56202043 | None:intergenic |
| GAATACGGACGCTTAGAAGA+GGG | 0.616215 | 6_1:-56202175 | None:intergenic |
| AGTAGTTCGCTGGCCACACA+TGG | 0.624678 | 6_1:-56202692 | None:intergenic |
| GACACTATTATCCTCTGGAT+AGG | 0.627186 | 6_1:-56204074 | None:intergenic |
| AAATCAGCTCTGGCGACTGG+AGG | 0.633757 | 6_1:+56201921 | Msa0889190:CDS |
| TTGACCAATCCTGTATAACC+AGG | 0.634222 | 6_1:-56204980 | None:intergenic |
| ACTGCTCGCAAGTCCACCGG+CGG | 0.647164 | 6_1:+56201858 | Msa0889190:CDS |
| GTGCCATCAGTGTAAGCATG+AGG | 0.652803 | 6_1:-56202727 | None:intergenic |
| AACGAAGAACTGAGAAAGTG+AGG | 0.655894 | 6_1:-56201604 | None:intergenic |
| ATGATGTTCTTGTTGAAGAG+CGG | 0.661430 | 6_1:-56202111 | None:intergenic |
| TGTGTTTGTCATAGTGTACG+AGG | 0.667460 | 6_1:+56206678 | Msa0889190:three_prime_UTR |
| GACAGGACAAAATTGGCGCG+TGG | 0.667471 | 6_1:+56205995 | Msa0889190:intron |
| AAGCCACACAGATTCAGACC+TGG | 0.672238 | 6_1:+56201951 | Msa0889190:CDS |
| TTCTCTGCCTTACCAACAGT+AGG | 0.685066 | 6_1:-56206947 | None:intergenic |
| GTTCCAGGTCTGAATCTGTG+TGG | 0.688220 | 6_1:-56201954 | None:intergenic |
| AGATGTTTACTCCTATCCAG+AGG | 0.692074 | 6_1:+56204063 | Msa0889190:CDS |
| GAATAGATGAAAATTCAGGA+TGG | 0.699038 | 6_1:-56206338 | None:intergenic |
| CGCCAGAGCTGATTTCCGGG+CGG | 0.701307 | 6_1:-56201913 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAGTAAAATTAATGA+TGG | - | chr6_1:56202240-56202259 | None:intergenic | 10.0% |
| !! | ATATAAAAATAAGGAAATTA+GGG | - | chr6_1:56202404-56202423 | None:intergenic | 10.0% |
| !! | TATATAAAAATAAGGAAATT+AGG | - | chr6_1:56202405-56202424 | None:intergenic | 10.0% |
| !!! | ATAAATTTAAATTTTCTTTG+TGG | + | chr6_1:56203970-56203989 | Msa0889190:intron | 10.0% |
| !!! | TTATATATTTTACTGATTAA+TGG | + | chr6_1:56204354-56204373 | Msa0889190:intron | 10.0% |
| !!! | ATACTCAATTTTATAATTAT+CGG | - | chr6_1:56204595-56204614 | None:intergenic | 10.0% |
| !! | TAATTATAAAATTGAGTATT+TGG | + | chr6_1:56204596-56204615 | Msa0889190:intron | 10.0% |
| !! | TAAATTTATAAAACCAAATA+TGG | - | chr6_1:56207053-56207072 | None:intergenic | 10.0% |
| !!! | AATTCATGTTTTATAAATTT+AGG | + | chr6_1:56207121-56207140 | Msa0889190:three_prime_UTR | 10.0% |
| !! | TAAATTCTGATTATAATTTG+TGG | + | chr6_1:56202473-56202492 | Msa0889190:intron | 15.0% |
| !!! | AAATTCTGATTATAATTTGT+GGG | + | chr6_1:56202474-56202493 | Msa0889190:intron | 15.0% |
| !! | GATCATGTTTAAATTATAAA+TGG | - | chr6_1:56203004-56203023 | None:intergenic | 15.0% |
| !! | TTATAATTTAAACATGATCT+TGG | + | chr6_1:56203005-56203024 | Msa0889190:intron | 15.0% |
| !! | TATAATTTAAACATGATCTT+GGG | + | chr6_1:56203006-56203025 | Msa0889190:intron | 15.0% |
| !!! | ATGTTATTTTATCTTCTTTT+AGG | + | chr6_1:56203265-56203284 | Msa0889190:intron | 15.0% |
| !!! | TTAGTTTAAATTATTTGTTG+AGG | - | chr6_1:56203950-56203969 | None:intergenic | 15.0% |
| !! | TAATTATGCTTATTGTATTA+TGG | + | chr6_1:56204034-56204053 | Msa0889190:intron | 15.0% |
| !!! | TTTATTGTTTTTCCTTATTA+TGG | + | chr6_1:56204391-56204410 | Msa0889190:intron | 15.0% |
| !! | CAAATCTAAACAAAATAATA+TGG | - | chr6_1:56204721-56204740 | None:intergenic | 15.0% |
| !! | TTGATATATAATTTATGGTA+TGG | - | chr6_1:56204850-56204869 | None:intergenic | 15.0% |
| !!! | AAATGATTACAAATTTTGAT+TGG | + | chr6_1:56204912-56204931 | Msa0889190:CDS | 15.0% |
| !!! | ACAAATGTTTTCTTTTATAT+GGG | - | chr6_1:56205904-56205923 | None:intergenic | 15.0% |
| !!! | AACAAATGTTTTCTTTTATA+TGG | - | chr6_1:56205905-56205924 | None:intergenic | 15.0% |
| !! | ATATTATAAGAAATCAAACA+TGG | + | chr6_1:56206388-56206407 | Msa0889190:intron | 15.0% |
| !! | TTTAATCTATTTATCCAAAA+GGG | - | chr6_1:56206767-56206786 | None:intergenic | 15.0% |
| !!! | TTTTAATCTATTTATCCAAA+AGG | - | chr6_1:56206768-56206787 | None:intergenic | 15.0% |
| !! | GATAAATAGATTAAAATGTT+TGG | + | chr6_1:56206772-56206791 | Msa0889190:intron | 15.0% |
| !!! | TTCCTTATTTTTATATACGA+TGG | + | chr6_1:56202408-56202427 | Msa0889190:intron | 20.0% |
| !! | ATCCATCGTATATAAAAATA+AGG | - | chr6_1:56202413-56202432 | None:intergenic | 20.0% |
| !! | ATTATTTATGTGAAATGTCA+TGG | + | chr6_1:56202898-56202917 | Msa0889190:intron | 20.0% |
| !! | GATGTTATAAACAAAATAGT+TGG | - | chr6_1:56203231-56203250 | None:intergenic | 20.0% |
| !!! | CTATTTTGTTTATAACATCT+TGG | + | chr6_1:56203232-56203251 | Msa0889190:intron | 20.0% |
| !!! | AATTTTGGGAAAGAAAAAAA+AGG | - | chr6_1:56203693-56203712 | None:intergenic | 20.0% |
| !!! | CAAAACAACAAAATTAGTTT+CGG | + | chr6_1:56203747-56203766 | Msa0889190:intron | 20.0% |
| !!! | TTTGAGTTTTAAGTTTTAAC+AGG | - | chr6_1:56204252-56204271 | None:intergenic | 20.0% |
| !! | GTCACTTGATATATAATTTA+TGG | - | chr6_1:56204855-56204874 | None:intergenic | 20.0% |
| !! | TCTGTTATAATTTCTTTCTT+AGG | + | chr6_1:56205215-56205234 | Msa0889190:intron | 20.0% |
| !! | AGATTATACACTTAATTACA+AGG | - | chr6_1:56205470-56205489 | None:intergenic | 20.0% |
| !! | TAATTATCTAACCATTTGAT+TGG | + | chr6_1:56205740-56205759 | Msa0889190:intron | 20.0% |
| !!! | GGTAACATTAAATTTTACAA+AGG | - | chr6_1:56206108-56206127 | None:intergenic | 20.0% |
| !! | ATAGAAATCTTATCTAACAT+AGG | + | chr6_1:56206411-56206430 | Msa0889190:intron | 20.0% |
| !! | AAACAAACAGAAAAATTACA+AGG | + | chr6_1:56206461-56206480 | Msa0889190:intron | 20.0% |
| !! | TTACAATTTAGTGTTAAATC+TGG | - | chr6_1:56206733-56206752 | None:intergenic | 20.0% |
| !! | ATTTAACACTAAATTGTAAG+TGG | + | chr6_1:56206734-56206753 | Msa0889190:intron | 20.0% |
| !!! | TTGTGATTATGTGTTTTTTT+AGG | + | chr6_1:56206916-56206935 | Msa0889190:intron | 20.0% |
| !! | AACATAACTAGATCAAATTT+AGG | + | chr6_1:56207025-56207044 | Msa0889190:three_prime_UTR | 20.0% |
| !!! | TTATGTATTTGATTTGATGA+CGG | + | chr6_1:56207070-56207089 | Msa0889190:three_prime_UTR | 20.0% |
| ! | ATGAAGAATTGAATAATTGG+AGG | - | chr6_1:56201630-56201649 | None:intergenic | 25.0% |
| ! | CAGATGAAGAATTGAATAAT+TGG | - | chr6_1:56201633-56201652 | None:intergenic | 25.0% |
| ! | CAACACTTGAAATGAAAATT+TGG | - | chr6_1:56201690-56201709 | None:intergenic | 25.0% |
| !!! | TGTTTTTGTTCAGGTAATTA+TGG | + | chr6_1:56202750-56202769 | Msa0889190:intron | 25.0% |
| !! | TCAGGTAATTATGGTTTTTA+AGG | + | chr6_1:56202759-56202778 | Msa0889190:intron | 25.0% |
| !!! | ATTATGGTTTTTAAGGAAGT+AGG | + | chr6_1:56202766-56202785 | Msa0889190:intron | 25.0% |
| !!! | AAATTTTACCGTTTGAGTTT+CGG | - | chr6_1:56202836-56202855 | None:intergenic | 25.0% |
| ! | TAAATTATAAATGGCATGTC+CGG | - | chr6_1:56202995-56203014 | None:intergenic | 25.0% |
| ! | GATTCAAGTCTAATGTATAT+GGG | - | chr6_1:56203182-56203201 | None:intergenic | 25.0% |
| ! | TGATTCAAGTCTAATGTATA+TGG | - | chr6_1:56203183-56203202 | None:intergenic | 25.0% |
| !! | AGCTTTTATTGTAATAGTGT+GGG | - | chr6_1:56203375-56203394 | None:intergenic | 25.0% |
| !! | AAGCTTTTATTGTAATAGTG+TGG | - | chr6_1:56203376-56203395 | None:intergenic | 25.0% |
| ! | TGAATGTAATTAGACCTATT+GGG | - | chr6_1:56203597-56203616 | None:intergenic | 25.0% |
| ! | ATGAATGTAATTAGACCTAT+TGG | - | chr6_1:56203598-56203617 | None:intergenic | 25.0% |
| ! | ATAGGTCTAATTACATTCAT+TGG | + | chr6_1:56203598-56203617 | Msa0889190:intron | 25.0% |
| !!! | GAATTGGTGTTGATAATTTT+GGG | - | chr6_1:56203707-56203726 | None:intergenic | 25.0% |
| !!! | ATTTTGTTGTTTTGTTGTTG+TGG | - | chr6_1:56203741-56203760 | None:intergenic | 25.0% |
| ! | AAAACAAGATACGAAACAAA+AGG | - | chr6_1:56203897-56203916 | None:intergenic | 25.0% |
| ! | TATCATATTGCTTTCCTTTA+TGG | + | chr6_1:56204287-56204306 | Msa0889190:intron | 25.0% |
| ! | ATCATATTGCTTTCCTTTAT+GGG | + | chr6_1:56204288-56204307 | Msa0889190:intron | 25.0% |
| ! | ATCCATGAAAACATATTTGT+TGG | + | chr6_1:56204424-56204443 | Msa0889190:intron | 25.0% |
| ! | TCCATGAAAACATATTTGTT+GGG | + | chr6_1:56204425-56204444 | Msa0889190:intron | 25.0% |
| ! | ATATTTAATCCAGCAAACAA+GGG | - | chr6_1:56204469-56204488 | None:intergenic | 25.0% |
| ! | TATATTTAATCCAGCAAACA+AGG | - | chr6_1:56204470-56204489 | None:intergenic | 25.0% |
| !!! | TTGATAATGTTGAGATTAGA+AGG | + | chr6_1:56204511-56204530 | Msa0889190:intron | 25.0% |
| !! | TGATAATGTTGAGATTAGAA+GGG | + | chr6_1:56204512-56204531 | Msa0889190:intron | 25.0% |
| ! | AATTCATAAGAACCAACATA+TGG | - | chr6_1:56205035-56205054 | None:intergenic | 25.0% |
| ! | ATAGAGATACAAATAGCTAA+TGG | - | chr6_1:56205633-56205652 | None:intergenic | 25.0% |
| ! | GTTTATACATACACTCAAAA+TGG | + | chr6_1:56205665-56205684 | Msa0889190:intron | 25.0% |
| ! | TTCTAATGTTTGAAGGATAA+TGG | - | chr6_1:56206270-56206289 | None:intergenic | 25.0% |
| !!! | TTCTTGTTTCTAATGTTTGA+AGG | - | chr6_1:56206277-56206296 | None:intergenic | 25.0% |
| ! | TTCAAACATTAGAAACAAGA+AGG | + | chr6_1:56206276-56206295 | Msa0889190:intron | 25.0% |
| ! | ATTAGAAACAAGAAGGAATA+CGG | + | chr6_1:56206283-56206302 | Msa0889190:intron | 25.0% |
| !!! | ATTACAGCTTTGAACATATT+TGG | - | chr6_1:56206309-56206328 | None:intergenic | 25.0% |
| !! | ATCCTGAATTTTCATCTATT+CGG | + | chr6_1:56206340-56206359 | Msa0889190:CDS | 25.0% |
| ! | CAAAGTTATATGACAACATT+AGG | - | chr6_1:56206573-56206592 | None:intergenic | 25.0% |
| !!! | ACTAAATTGTAAGTGGATTA+TGG | + | chr6_1:56206741-56206760 | Msa0889190:intron | 25.0% |
| ! | AAAAACACATAATCACAACA+AGG | - | chr6_1:56206914-56206933 | None:intergenic | 25.0% |
| !!! | TTATGTGTTTTTTTAGGACT+AGG | + | chr6_1:56206922-56206941 | Msa0889190:intron | 25.0% |
| ! | TCAAATTTAGGTACCATATT+TGG | + | chr6_1:56207037-56207056 | Msa0889190:three_prime_UTR | 25.0% |
| ! | ACACTACAAGAAATCTAATA+TGG | - | chr6_1:56207149-56207168 | None:intergenic | 25.0% |
| AAATGAAAATTTGGACCGAT+GGG | - | chr6_1:56201681-56201700 | None:intergenic | 30.0% | |
| TATGGTTCAGATCTGAAAAT+GGG | - | chr6_1:56201745-56201764 | None:intergenic | 30.0% | |
| ! | TGTGAGATTTTAGATGTGTA+TGG | - | chr6_1:56201763-56201782 | None:intergenic | 30.0% |
| !! | TTTTTCATTTCAAGTGACGA+TGG | + | chr6_1:56202260-56202279 | Msa0889190:CDS | 30.0% |
| GAGAGAAACATTACATACAA+TGG | - | chr6_1:56202378-56202397 | None:intergenic | 30.0% | |
| ! | TGATTATAATTTGTGGGATC+AGG | + | chr6_1:56202480-56202499 | Msa0889190:intron | 30.0% |
| AAATATTGTCAGTCCTAGAT+TGG | - | chr6_1:56202606-56202625 | None:intergenic | 30.0% | |
| TATAATGCAACATTCGTAAC+AGG | - | chr6_1:56202808-56202827 | None:intergenic | 30.0% | |
| CTGATAGTTGTCATGAATAA+GGG | + | chr6_1:56202964-56202983 | Msa0889190:intron | 30.0% | |
| TGATAGTTGTCATGAATAAG+GGG | + | chr6_1:56202965-56202984 | Msa0889190:intron | 30.0% | |
| AGTTAAGTTTCAAACTCCAA+TGG | - | chr6_1:56203044-56203063 | None:intergenic | 30.0% | |
| ! | CTCAAAGTCATGATTCTTTT+TGG | - | chr6_1:56203319-56203338 | None:intergenic | 30.0% |
| ! | TTTTATTGTAATAGTGTGGG+GGG | - | chr6_1:56203372-56203391 | None:intergenic | 30.0% |
| ! | CTTTTATTGTAATAGTGTGG+GGG | - | chr6_1:56203373-56203392 | None:intergenic | 30.0% |
| ! | GCTTTTATTGTAATAGTGTG+GGG | - | chr6_1:56203374-56203393 | None:intergenic | 30.0% |
| TTTGTAATACGTGTACTTTG+AGG | + | chr6_1:56203485-56203504 | Msa0889190:intron | 30.0% | |
| CAAGAAGTTGAAATCGTATT+TGG | - | chr6_1:56203654-56203673 | None:intergenic | 30.0% | |
| CAAATACGATTTCAACTTCT+TGG | + | chr6_1:56203652-56203671 | Msa0889190:intron | 30.0% | |
| !!! | CGAATTGGTGTTGATAATTT+TGG | - | chr6_1:56203708-56203727 | None:intergenic | 30.0% |
| AGCATAATTAGTACATAGTG+AGG | - | chr6_1:56204024-56204043 | None:intergenic | 30.0% | |
| AAGGGAAATTGTATCATTGA+AGG | - | chr6_1:56204175-56204194 | None:intergenic | 30.0% | |
| ! | TCCCAACAAATATGTTTTCA+TGG | - | chr6_1:56204429-56204448 | None:intergenic | 30.0% |
| TTGCATTTCTCAAAGATCTA+AGG | + | chr6_1:56204535-56204554 | Msa0889190:intron | 30.0% | |
| AAGAGCTTAAGATGTTATGT+TGG | + | chr6_1:56204695-56204714 | Msa0889190:intron | 30.0% | |
| TGGAATCAAATTCAAGAAAG+TGG | + | chr6_1:56204932-56204951 | Msa0889190:CDS | 30.0% | |
| !! | CAAGAAGTTGATCCAATTTT+TGG | + | chr6_1:56204956-56204975 | Msa0889190:CDS | 30.0% |
| ATAAGAACCAACATATGGTA+GGG | - | chr6_1:56205030-56205049 | None:intergenic | 30.0% | |
| GCTGCTATATAACAACTAAA+AGG | - | chr6_1:56205094-56205113 | None:intergenic | 30.0% | |
| CAACAAGATCATTCATATCA+CGG | + | chr6_1:56205134-56205153 | Msa0889190:intron | 30.0% | |
| GATTATCTAAGTTTGTGTGT+AGG | + | chr6_1:56205332-56205351 | Msa0889190:intron | 30.0% | |
| ! | AATTTTGTCCTGTCAACAAA+TGG | - | chr6_1:56205989-56206008 | None:intergenic | 30.0% |
| ! | ATTTGTTGACAGGACAAAAT+TGG | + | chr6_1:56205988-56206007 | Msa0889190:intron | 30.0% |
| !! | CGTAGTTGATGAATTTACAA+AGG | - | chr6_1:56206129-56206148 | None:intergenic | 30.0% |
| !! | ATATATTGATTCAGCTCATC+TGG | + | chr6_1:56206192-56206211 | Msa0889190:intron | 30.0% |
| GAATAGATGAAAATTCAGGA+TGG | - | chr6_1:56206341-56206360 | None:intergenic | 30.0% | |
| GAAAAATTACAAGGAGATTG+TGG | + | chr6_1:56206470-56206489 | Msa0889190:intron | 30.0% | |
| TCAATAGTGTATATATGCTC+TGG | + | chr6_1:56206506-56206525 | Msa0889190:intron | 30.0% | |
| ACTTTGTACATTTCTATTGC+AGG | + | chr6_1:56206587-56206606 | Msa0889190:intron | 30.0% | |
| ! | AAACCTCTTGAGAGATTTTT+GGG | + | chr6_1:56206879-56206898 | Msa0889190:intron | 30.0% |
| GATCTAGTTATGTTAAACTC+TGG | - | chr6_1:56207019-56207038 | None:intergenic | 30.0% | |
| !! | GAAGTGTTTTTACGATAGAG+AGG | - | chr6_1:56201578-56201597 | None:intergenic | 35.0% |
| GAAATGAAAATTTGGACCGA+TGG | - | chr6_1:56201682-56201701 | None:intergenic | 35.0% | |
| GTATGGTTCAGATCTGAAAA+TGG | - | chr6_1:56201746-56201765 | None:intergenic | 35.0% | |
| ATGATGTTCTTGTTGAAGAG+CGG | - | chr6_1:56202114-56202133 | None:intergenic | 35.0% | |
| GATTGATCGAGAAGAGAATA+CGG | - | chr6_1:56202193-56202212 | None:intergenic | 35.0% | |
| ATGGAGAAACAACGATTAGT+GGG | - | chr6_1:56202359-56202378 | None:intergenic | 35.0% | |
| AATGGAGAAACAACGATTAG+TGG | - | chr6_1:56202360-56202379 | None:intergenic | 35.0% | |
| ! | TATAATTTGTGGGATCAGGA+TGG | + | chr6_1:56202484-56202503 | Msa0889190:intron | 35.0% |
| ! | ATAATTTGTGGGATCAGGAT+GGG | + | chr6_1:56202485-56202504 | Msa0889190:intron | 35.0% |
| ACAATATTTCCACTTTCCCA+TGG | + | chr6_1:56202617-56202636 | Msa0889190:CDS | 35.0% | |
| ATTTAGTGAAGAGTGACCAT+GGG | - | chr6_1:56202636-56202655 | None:intergenic | 35.0% | |
| ATATCTGACCGAAACTCAAA+CGG | + | chr6_1:56202825-56202844 | Msa0889190:intron | 35.0% | |
| GCTGATAGTTGTCATGAATA+AGG | + | chr6_1:56202963-56202982 | Msa0889190:intron | 35.0% | |
| ATCAGCTTTCCTAATTCTCA+GGG | - | chr6_1:56203117-56203136 | None:intergenic | 35.0% | |
| TATCAGCTTTCCTAATTCTC+AGG | - | chr6_1:56203118-56203137 | None:intergenic | 35.0% | |
| TGAGAATTAGGAAAGCTGAT+AGG | + | chr6_1:56203117-56203136 | Msa0889190:intron | 35.0% | |
| ! | ATCAACACCAATTCGTTTTC+TGG | + | chr6_1:56203713-56203732 | Msa0889190:intron | 35.0% |
| TTCGGAATTTGTAACAACAC+AGG | + | chr6_1:56203765-56203784 | Msa0889190:intron | 35.0% | |
| TCCACATTTAGCACAACATT+TGG | + | chr6_1:56204102-56204121 | Msa0889190:CDS | 35.0% | |
| !!! | GCACAACATTTGGCATTTTT+TGG | + | chr6_1:56204112-56204131 | Msa0889190:CDS | 35.0% |
| ! | TGACTTTTCATCGCTTCAAA+AGG | + | chr6_1:56204138-56204157 | Msa0889190:CDS | 35.0% |
| !! | CAATTTCCCTTTAGAGTACT+TGG | + | chr6_1:56204184-56204203 | Msa0889190:intron | 35.0% |
| TAGCAAAAGTAAACGCTCAA+GGG | - | chr6_1:56204320-56204339 | None:intergenic | 35.0% | |
| ATAGCAAAAGTAAACGCTCA+AGG | - | chr6_1:56204321-56204340 | None:intergenic | 35.0% | |
| ATCTCATCACAGCCATAATA+AGG | - | chr6_1:56204406-56204425 | None:intergenic | 35.0% | |
| ! | TTTTGTCTTTCTACTCTGCT+AGG | + | chr6_1:56204809-56204828 | Msa0889190:intron | 35.0% |
| GTATAACCAGGTCCAAAAAT+TGG | - | chr6_1:56204971-56204990 | None:intergenic | 35.0% | |
| !! | ATTTTTGGACCTGGTTATAC+AGG | + | chr6_1:56204971-56204990 | Msa0889190:CDS | 35.0% |
| !! | TATACAGGATTGGTCAACAT+TGG | + | chr6_1:56204986-56205005 | Msa0889190:CDS | 35.0% |
| ! | GATTGGTCAACATTGGAAAT+AGG | + | chr6_1:56204993-56205012 | Msa0889190:CDS | 35.0% |
| TAAGAACCAACATATGGTAG+GGG | - | chr6_1:56205029-56205048 | None:intergenic | 35.0% | |
| CATAAGAACCAACATATGGT+AGG | - | chr6_1:56205031-56205050 | None:intergenic | 35.0% | |
| CTTGAACCAAAGTCTAAAGA+AGG | + | chr6_1:56205243-56205262 | Msa0889190:CDS | 35.0% | |
| CAAATGCCTTCTTTAGACTT+TGG | - | chr6_1:56205252-56205271 | None:intergenic | 35.0% | |
| ACACTTACAACTGCATATTC+AGG | - | chr6_1:56205303-56205322 | None:intergenic | 35.0% | |
| ! | CTACGGAAGGTCTTTTATAT+AGG | - | chr6_1:56205493-56205512 | None:intergenic | 35.0% |
| ! | CTTTTCTCTCTTACTCAACA+CGG | + | chr6_1:56205549-56205568 | Msa0889190:intron | 35.0% |
| ACTCAAAATGGTGTATGTCA+TGG | + | chr6_1:56205677-56205696 | Msa0889190:intron | 35.0% | |
| CTCAAGAACTTCCAATCAAA+TGG | - | chr6_1:56205754-56205773 | None:intergenic | 35.0% | |
| AGTGAAGATGATGTTCTTCA+AGG | + | chr6_1:56205925-56205944 | Msa0889190:intron | 35.0% | |
| GTGAAGATGATGTTCTTCAA+GGG | + | chr6_1:56205926-56205945 | Msa0889190:intron | 35.0% | |
| ! | ATAAGCATCCATTTGTTGAC+AGG | + | chr6_1:56205978-56205997 | Msa0889190:intron | 35.0% |
| CAGATGAATTTACTACGCTA+TGG | - | chr6_1:56206070-56206089 | None:intergenic | 35.0% | |
| TGCCGAATAGATGAAAATTC+AGG | - | chr6_1:56206345-56206364 | None:intergenic | 35.0% | |
| ATTTCTATTGCAGGTTGCTA+AGG | + | chr6_1:56206596-56206615 | Msa0889190:intron | 35.0% | |
| ! | TCAAGTCTTCGAACGATTTT+TGG | + | chr6_1:56206634-56206653 | Msa0889190:CDS | 35.0% |
| ! | CAAGTCTTCGAACGATTTTT+GGG | + | chr6_1:56206635-56206654 | Msa0889190:CDS | 35.0% |
| ! | GAAACCTCTTGAGAGATTTT+TGG | + | chr6_1:56206878-56206897 | Msa0889190:intron | 35.0% |
| AAACCCAAAAATCTCTCAAG+AGG | - | chr6_1:56206885-56206904 | None:intergenic | 35.0% | |
| ACGATAGAGAGGAAGAGATA+AGG | - | chr6_1:56201567-56201586 | None:intergenic | 40.0% | |
| AACGAAGAACTGAGAAAGTG+AGG | - | chr6_1:56201607-56201626 | None:intergenic | 40.0% | |
| TTCATCTGACTTTGCCCATT+TGG | + | chr6_1:56201645-56201664 | Msa0889190:five_prime_UTR | 40.0% | |
| TGGGTACAAAGAAGCCAAAT+GGG | - | chr6_1:56201662-56201681 | None:intergenic | 40.0% | |
| ATGGGTACAAAGAAGCCAAA+TGG | - | chr6_1:56201663-56201682 | None:intergenic | 40.0% | |
| ! | TTTGGCTTCTTTGTACCCAT+CGG | + | chr6_1:56201663-56201682 | Msa0889190:five_prime_UTR | 40.0% |
| CTGTGACTGTGATTGTGAAA+TGG | - | chr6_1:56201788-56201807 | None:intergenic | 40.0% | |
| GACGTTGGAATGGAAGTTTA+CGG | - | chr6_1:56202031-56202050 | None:intergenic | 40.0% | |
| CAATTTCACGAACAAGACGT+TGG | - | chr6_1:56202046-56202065 | None:intergenic | 40.0% | |
| TTCTTGTTGAAGAGCGGAAA+CGG | - | chr6_1:56202108-56202127 | None:intergenic | 40.0% | |
| ! | ACGAAAGTGGAAGGTTTTCT+TGG | - | chr6_1:56202152-56202171 | None:intergenic | 40.0% |
| AAGGTTGAAGTTGAGTTCGT+TGG | - | chr6_1:56202327-56202346 | None:intergenic | 40.0% | |
| ACTCAACTTCAACCTTTCTC+AGG | + | chr6_1:56202331-56202350 | Msa0889190:CDS | 40.0% | |
| ! | TAATTTGTGGGATCAGGATG+GGG | + | chr6_1:56202486-56202505 | Msa0889190:intron | 40.0% |
| GATTTAGTGAAGAGTGACCA+TGG | - | chr6_1:56202637-56202656 | None:intergenic | 40.0% | |
| ! | GCTTTTACTTGTACCATGTG+TGG | + | chr6_1:56202679-56202698 | Msa0889190:CDS | 40.0% |
| AATCCTCATGCTTACACTGA+TGG | + | chr6_1:56202724-56202743 | Msa0889190:CDS | 40.0% | |
| !!! | TGATGGCACTGTTTTTGTTC+AGG | + | chr6_1:56202741-56202760 | Msa0889190:CDS | 40.0% |
| TGCAACATTCGTAACAGGTT+TGG | - | chr6_1:56202803-56202822 | None:intergenic | 40.0% | |
| TAGCTTAGCTGCTCAAAGTT+TGG | + | chr6_1:56202871-56202890 | Msa0889190:intron | 40.0% | |
| ! | TGTCATGGATTGCATAAGAC+AGG | + | chr6_1:56202913-56202932 | Msa0889190:intron | 40.0% |
| GTCATGAATAAGGGGAAATC+CGG | + | chr6_1:56202973-56202992 | Msa0889190:intron | 40.0% | |
| ACTCGAAGTCTAGCATCATA+TGG | - | chr6_1:56203091-56203110 | None:intergenic | 40.0% | |
| TATGATGCTAGACTTCGAGT+TGG | + | chr6_1:56203091-56203110 | Msa0889190:intron | 40.0% | |
| TTAGACCTATTGGGTACAGT+TGG | - | chr6_1:56203588-56203607 | None:intergenic | 40.0% | |
| TGTGGATCCAGAAAACGAAT+TGG | - | chr6_1:56203723-56203742 | None:intergenic | 40.0% | |
| GGAACAGTACAGAACCAAAT+CGG | + | chr6_1:56203806-56203825 | Msa0889190:CDS | 40.0% | |
| TCGCAAAAACAGTGAGAGAT+CGG | + | chr6_1:56203858-56203877 | Msa0889190:intron | 40.0% | |
| AGATGTTTACTCCTATCCAG+AGG | + | chr6_1:56204063-56204082 | Msa0889190:CDS | 40.0% | |
| GACACTATTATCCTCTGGAT+AGG | - | chr6_1:56204077-56204096 | None:intergenic | 40.0% | |
| TCCAGAGGATAATAGTGTCT+TGG | + | chr6_1:56204078-56204097 | Msa0889190:CDS | 40.0% | |
| TCCAAGACACTATTATCCTC+TGG | - | chr6_1:56204082-56204101 | None:intergenic | 40.0% | |
| GCCAAATGTTGTGCTAAATG+TGG | - | chr6_1:56204106-56204125 | None:intergenic | 40.0% | |
| GCGTAACCAAGTACTCTAAA+GGG | - | chr6_1:56204193-56204212 | None:intergenic | 40.0% | |
| AACAAATGCAGGTCTCATAG+AGG | - | chr6_1:56204220-56204239 | None:intergenic | 40.0% | |
| GGCATCAAGTTAACAAATGC+AGG | - | chr6_1:56204231-56204250 | None:intergenic | 40.0% | |
| TTGCTTTCCTTTATGGGACA+CGG | + | chr6_1:56204294-56204313 | Msa0889190:intron | 40.0% | |
| !! | GTTGATCCAATTTTTGGACC+TGG | + | chr6_1:56204962-56204981 | Msa0889190:CDS | 40.0% |
| TTGACCAATCCTGTATAACC+AGG | - | chr6_1:56204983-56205002 | None:intergenic | 40.0% | |
| CATTGGAAATAGGTGAGAGT+TGG | + | chr6_1:56205003-56205022 | Msa0889190:intron | 40.0% | |
| GAATTGAGCTGAATGCAAAC+TGG | - | chr6_1:56205197-56205216 | None:intergenic | 40.0% | |
| TGCATATTCAGGTCTACAGT+TGG | - | chr6_1:56205292-56205311 | None:intergenic | 40.0% | |
| CAGTTGTAAGTGTGCTTGTT+TGG | + | chr6_1:56205310-56205329 | Msa0889190:intron | 40.0% | |
| TTACTGAATAGCACTACGGA+AGG | - | chr6_1:56205506-56205525 | None:intergenic | 40.0% | |
| ! | CGTGTTACTGAATAGCACTA+CGG | - | chr6_1:56205510-56205529 | None:intergenic | 40.0% |
| ! | CGTAGTGCTATTCAGTAACA+CGG | + | chr6_1:56205508-56205527 | Msa0889190:intron | 40.0% |
| ATACTCTGTTCCTGCATTCA+AGG | + | chr6_1:56206033-56206052 | Msa0889190:CDS | 40.0% | |
| GAGATACATACCTTGAATGC+AGG | - | chr6_1:56206046-56206065 | None:intergenic | 40.0% | |
| TACGACTGCTGTAAGATTTC+TGG | + | chr6_1:56206145-56206164 | Msa0889190:intron | 40.0% | |
| GATGCACGTACAGATAAGTT+GGG | - | chr6_1:56206248-56206267 | None:intergenic | 40.0% | |
| AGATGAAAATTCAGGATGGC+TGG | - | chr6_1:56206337-56206356 | None:intergenic | 40.0% | |
| TTACAAGGAGATTGTGGTAC+TGG | + | chr6_1:56206476-56206495 | Msa0889190:intron | 40.0% | |
| ! | TATATATGCTCTGGTAGTGC+TGG | + | chr6_1:56206515-56206534 | Msa0889190:intron | 40.0% |
| TTTGGGAACAACTCTAGTTG+TGG | + | chr6_1:56206652-56206671 | Msa0889190:exon | 40.0% | |
| TGTGTTTGTCATAGTGTACG+AGG | + | chr6_1:56206678-56206697 | Msa0889190:three_prime_UTR | 40.0% | |
| !!! | TAAGTGGATTATGGCCCTTT+TGG | + | chr6_1:56206750-56206769 | Msa0889190:intron | 40.0% |
| TAAGGCAGAGAAGTTGAAAG+AGG | + | chr6_1:56206958-56206977 | Msa0889190:three_prime_UTR | 40.0% | |
| TCTCTCAAAGCAACTGTTCC+AGG | - | chr6_1:56201972-56201991 | None:intergenic | 45.0% | |
| TCACGAACAAGACGTTGGAA+TGG | - | chr6_1:56202041-56202060 | None:intergenic | 45.0% | |
| TAGAAGAGGGTAGACGAAAG+TGG | - | chr6_1:56202165-56202184 | None:intergenic | 45.0% | |
| GAATACGGACGCTTAGAAGA+GGG | - | chr6_1:56202178-56202197 | None:intergenic | 45.0% | |
| AGAATACGGACGCTTAGAAG+AGG | - | chr6_1:56202179-56202198 | None:intergenic | 45.0% | |
| GATTAGTGGGAACCTGAGAA+AGG | - | chr6_1:56202346-56202365 | None:intergenic | 45.0% | |
| TTGCTAACAGCAGGAACTAG+AGG | - | chr6_1:56202577-56202596 | None:intergenic | 45.0% | |
| ! | TCTAGTTCCTGCTGTTAGCA+AGG | + | chr6_1:56202576-56202595 | Msa0889190:CDS | 45.0% |
| TTAGCAAGGATGGCCAATCT+AGG | + | chr6_1:56202590-56202609 | Msa0889190:CDS | 45.0% | |
| CACTCTTCACTAAATCTCGC+AGG | + | chr6_1:56202641-56202660 | Msa0889190:CDS | 45.0% | |
| TGGGATAACGAGCTAACCAT+TGG | + | chr6_1:56203025-56203044 | Msa0889190:intron | 45.0% | |
| TTGTGATACGTGTACTGTGC+TGG | + | chr6_1:56203429-56203448 | Msa0889190:intron | 45.0% | |
| AGTTGAGAGAATGGTCATGG+TGG | - | chr6_1:56203539-56203558 | None:intergenic | 45.0% | |
| ACCATGACCATTCTCTCAAC+TGG | + | chr6_1:56203538-56203557 | Msa0889190:intron | 45.0% | |
| ACCAGTTGAGAGAATGGTCA+TGG | - | chr6_1:56203542-56203561 | None:intergenic | 45.0% | |
| ATGACCATTCTCTCAACTGG+TGG | + | chr6_1:56203541-56203560 | Msa0889190:intron | 45.0% | |
| GAATCCACCAGTTGAGAGAA+TGG | - | chr6_1:56203548-56203567 | None:intergenic | 45.0% | |
| !! | CTCAACTGGTGGATTCCTAA+TGG | + | chr6_1:56203552-56203571 | Msa0889190:intron | 45.0% |
| TCTGTCCAACTGTACCCAAT+AGG | + | chr6_1:56203580-56203599 | Msa0889190:intron | 45.0% | |
| GTTCCGATTGTTGCTGGAAT+CGG | - | chr6_1:56203791-56203810 | None:intergenic | 45.0% | |
| TGTACTGTTCCGATTGTTGC+TGG | - | chr6_1:56203797-56203816 | None:intergenic | 45.0% | |
| GCTTCTTCACTGTTCCGATT+TGG | - | chr6_1:56203823-56203842 | None:intergenic | 45.0% | |
| ATCGGAACAGTGAAGAAGCA+AGG | + | chr6_1:56203824-56203843 | Msa0889190:CDS | 45.0% | |
| CGCGTAACCAAGTACTCTAA+AGG | - | chr6_1:56204194-56204213 | None:intergenic | 45.0% | |
| ! | TTAGAGTACTTGGTTACGCG+TGG | + | chr6_1:56204194-56204213 | Msa0889190:intron | 45.0% |
| ! | CATGTTGAACCCTTGTTTGC+TGG | + | chr6_1:56204457-56204476 | Msa0889190:intron | 45.0% |
| TGGACCTGGTTATACAGGAT+TGG | + | chr6_1:56204976-56204995 | Msa0889190:CDS | 45.0% | |
| ATACTGCACACACACATGAC+TGG | - | chr6_1:56205864-56205883 | None:intergenic | 45.0% | |
| GTCATGTGTGTGTGCAGTAT+AGG | + | chr6_1:56205864-56205883 | Msa0889190:intron | 45.0% | |
| GGATGCACGTACAGATAAGT+TGG | - | chr6_1:56206249-56206268 | None:intergenic | 45.0% | |
| TTGCAGGTTGCTAAGGAGAT+TGG | + | chr6_1:56206603-56206622 | Msa0889190:intron | 45.0% | |
| TTCTCTGCCTTACCAACAGT+AGG | - | chr6_1:56206950-56206969 | None:intergenic | 45.0% | |
| AGTTGAAAGAGGAGAGTGAC+AGG | + | chr6_1:56206969-56206988 | Msa0889190:three_prime_UTR | 45.0% | |
| !!! | TTTTGATAATTTTTTTATTT+TGG | + | chr6_1:56205712-56205731 | Msa0889190:intron | 5.0% |
| CTTCCAGAAGCTTCTCTCGA+TGG | + | chr6_1:56201821-56201840 | Msa0889190:exon | 50.0% | |
| AAGCCACACAGATTCAGACC+TGG | + | chr6_1:56201951-56201970 | Msa0889190:CDS | 50.0% | |
| GTTCCAGGTCTGAATCTGTG+TGG | - | chr6_1:56201957-56201976 | None:intergenic | 50.0% | |
| AGAGGGTAGACGAAAGTGGA+AGG | - | chr6_1:56202161-56202180 | None:intergenic | 50.0% | |
| TTGAGTGCAGCAACAGGTAG+AGG | + | chr6_1:56202523-56202542 | Msa0889190:CDS | 50.0% | |
| ACAGGTAGAGGATGGACAAC+AGG | + | chr6_1:56202535-56202554 | Msa0889190:CDS | 50.0% | |
| AGAGGATGGACAACAGGTTC+TGG | + | chr6_1:56202541-56202560 | Msa0889190:CDS | 50.0% | |
| GAGGATGGACAACAGGTTCT+GGG | + | chr6_1:56202542-56202561 | Msa0889190:CDS | 50.0% | |
| !! | ATGGACAACAGGTTCTGGGA+TGG | + | chr6_1:56202546-56202565 | Msa0889190:CDS | 50.0% |
| !! | ACAACAGGTTCTGGGATGGA+AGG | + | chr6_1:56202550-56202569 | Msa0889190:CDS | 50.0% |
| !! | CAACAGGTTCTGGGATGGAA+GGG | + | chr6_1:56202551-56202570 | Msa0889190:CDS | 50.0% |
| GTTCCTGCTGTTAGCAAGGA+TGG | + | chr6_1:56202580-56202599 | Msa0889190:CDS | 50.0% | |
| GAAGAGTGACCATGGGAAAG+TGG | - | chr6_1:56202629-56202648 | None:intergenic | 50.0% | |
| TCACTAAATCTCGCAGGCGA+AGG | + | chr6_1:56202647-56202666 | Msa0889190:CDS | 50.0% | |
| TAATAGCGCGAGTAGTTCGC+TGG | - | chr6_1:56202705-56202724 | None:intergenic | 50.0% | |
| GTGCCATCAGTGTAAGCATG+AGG | - | chr6_1:56202730-56202749 | None:intergenic | 50.0% | |
| !! | TCGAGTTGGCCCTGAGAATT+AGG | + | chr6_1:56203105-56203124 | Msa0889190:intron | 50.0% |
| ! | GATACGTGTACTGTGCTGGT+AGG | + | chr6_1:56203433-56203452 | Msa0889190:intron | 50.0% |
| GTTGGACAGAGTTGGCCATT+AGG | - | chr6_1:56203570-56203589 | None:intergenic | 50.0% | |
| TGGGTACAGTTGGACAGAGT+TGG | - | chr6_1:56203578-56203597 | None:intergenic | 50.0% | |
| ! | AGGCCGATTCCAGCAACAAT+CGG | + | chr6_1:56203785-56203804 | Msa0889190:intron | 50.0% |
| AGTTGGCCCCTACCATATGT+TGG | + | chr6_1:56205020-56205039 | Msa0889190:intron | 50.0% | |
| AGGTCTACAGTTGGATCAGC+AGG | - | chr6_1:56205283-56205302 | None:intergenic | 50.0% | |
| TCTGGATAAGTGACCAGAGC+TGG | - | chr6_1:56206715-56206734 | None:intergenic | 50.0% | |
| TAGGACTAGGCTCCTACTGT+TGG | + | chr6_1:56206935-56206954 | Msa0889190:intron | 50.0% | |
| CTAGGCTCCTACTGTTGGTA+AGG | + | chr6_1:56206940-56206959 | Msa0889190:three_prime_UTR | 50.0% | |
| GTGCCATCGAGAGAAGCTTC+TGG | - | chr6_1:56201827-56201846 | None:intergenic | 55.0% | |
| ! | AGTCGCCAGAGCTGATTTCC+GGG | - | chr6_1:56201919-56201938 | None:intergenic | 55.0% |
| ! | CAGTCGCCAGAGCTGATTTC+CGG | - | chr6_1:56201920-56201939 | None:intergenic | 55.0% |
| ! | AAATCAGCTCTGGCGACTGG+AGG | + | chr6_1:56201921-56201940 | Msa0889190:CDS | 55.0% |
| ! | CTGGTGTTGAGTGCAGCAAC+AGG | + | chr6_1:56202517-56202536 | Msa0889190:CDS | 55.0% |
| GTGCAGCAACAGGTAGAGGA+TGG | + | chr6_1:56202527-56202546 | Msa0889190:CDS | 55.0% | |
| TGGCCATCCTTGCTAACAGC+AGG | - | chr6_1:56202586-56202605 | None:intergenic | 55.0% | |
| AGTAGTTCGCTGGCCACACA+TGG | - | chr6_1:56202695-56202714 | None:intergenic | 55.0% | |
| ! | GTCATGGTGGAGCAAGACAC+GGG | - | chr6_1:56203526-56203545 | None:intergenic | 55.0% |
| ! | GGTCATGGTGGAGCAAGACA+CGG | - | chr6_1:56203527-56203546 | None:intergenic | 55.0% |
| ACAGTGAGAGATCGGCGAAG+AGG | + | chr6_1:56203866-56203885 | Msa0889190:intron | 55.0% | |
| TCAAGGGCCGTGTCCCATAA+AGG | - | chr6_1:56204304-56204323 | None:intergenic | 55.0% | |
| GACAGGACAAAATTGGCGCG+TGG | + | chr6_1:56205995-56206014 | Msa0889190:intron | 55.0% | |
| TTGGCGCGTGGTCTACTTTC+TGG | + | chr6_1:56206007-56206026 | Msa0889190:CDS | 55.0% | |
| TGGCGCGTGGTCTACTTTCT+GGG | + | chr6_1:56206008-56206027 | Msa0889190:CDS | 55.0% | |
| GGATCACGACAAACCAGCTC+TGG | + | chr6_1:56206699-56206718 | Msa0889190:three_prime_UTR | 55.0% | |
| GGACTTGCGAGCAGTCTGCT+TGG | - | chr6_1:56201853-56201872 | None:intergenic | 60.0% | |
| CAGACTGCTCGCAAGTCCAC+CGG | + | chr6_1:56201855-56201874 | Msa0889190:CDS | 60.0% | |
| !! | TTTGGTGGCGAGCTGCTTCC+GGG | - | chr6_1:56201892-56201911 | None:intergenic | 60.0% |
| !! | CTTTGGTGGCGAGCTGCTTC+CGG | - | chr6_1:56201893-56201912 | None:intergenic | 60.0% |
| ! | TGATTTCCGGGCGGCTTTGG+TGG | - | chr6_1:56201907-56201926 | None:intergenic | 60.0% |
| ! | AGCTGATTTCCGGGCGGCTT+TGG | - | chr6_1:56201910-56201929 | None:intergenic | 60.0% |
| ! | CGGAAATCAGCTCTGGCGAC+TGG | + | chr6_1:56201918-56201937 | Msa0889190:CDS | 60.0% |
| TGGGATCAGGATGGGGCGAT+GGG | + | chr6_1:56202493-56202512 | Msa0889190:intron | 60.0% | |
| ACTGCTCGCAAGTCCACCGG+CGG | + | chr6_1:56201858-56201877 | Msa0889190:CDS | 65.0% | |
| !! | TTGGTGGCGAGCTGCTTCCG+GGG | - | chr6_1:56201891-56201910 | None:intergenic | 65.0% |
| AGCCGCCCGGAAATCAGCTC+TGG | + | chr6_1:56201911-56201930 | Msa0889190:CDS | 65.0% | |
| ! | CGCCAGAGCTGATTTCCGGG+CGG | - | chr6_1:56201916-56201935 | None:intergenic | 65.0% |
| GAGCGGAAACGGCACTGCTC+TGG | - | chr6_1:56202097-56202116 | None:intergenic | 65.0% | |
| GTGGGATCAGGATGGGGCGA+TGG | + | chr6_1:56202492-56202511 | Msa0889190:intron | 65.0% | |
| GGGATCAGGATGGGGCGATG+GGG | + | chr6_1:56202494-56202513 | Msa0889190:intron | 65.0% | |
| TCGCAAGTCCACCGGCGGCA+AGG | + | chr6_1:56201863-56201882 | Msa0889190:CDS | 70.0% | |
| AGCTCGCCACCAAAGCCGCC+CGG | + | chr6_1:56201898-56201917 | Msa0889190:CDS | 70.0% | |
| TCAGGATGGGGCGATGGGGC+TGG | + | chr6_1:56202498-56202517 | Msa0889190:intron | 70.0% | |
| CTTCCGGGGAGCCTTGCCGC+CGG | - | chr6_1:56201877-56201896 | None:intergenic | 75.0% | |
| ! | CCACCGGCGGCAAGGCTCCC+CGG | + | chr6_1:56201871-56201890 | Msa0889190:CDS | 80.0% |
| ! | CCGGGGAGCCTTGCCGCCGG+TGG | - | chr6_1:56201874-56201893 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 56201554 | 56207236 | 56201554 | ID=Msa0889190;Name=Msa0889190 |
| chr6_1 | mRNA | 56201554 | 56207236 | 56201554 | ID=Msa0889190-mRNA-1;Parent=Msa0889190;Name=Msa0889190-mRNA-1;_AED=0.24;_eAED=0.24;_QI=286|0.55|0.8|0.9|0.88|0.8|10|379|447 |
| chr6_1 | exon | 56201554 | 56202379 | 56201554 | ID=Msa0889190-mRNA-1:exon:11074;Parent=Msa0889190-mRNA-1 |
| chr6_1 | exon | 56202502 | 56202762 | 56202502 | ID=Msa0889190-mRNA-1:exon:11075;Parent=Msa0889190-mRNA-1 |
| chr6_1 | exon | 56203787 | 56203848 | 56203787 | ID=Msa0889190-mRNA-1:exon:11076;Parent=Msa0889190-mRNA-1 |
| chr6_1 | exon | 56204060 | 56204159 | 56204060 | ID=Msa0889190-mRNA-1:exon:11077;Parent=Msa0889190-mRNA-1 |
| chr6_1 | exon | 56204908 | 56205014 | 56204908 | ID=Msa0889190-mRNA-1:exon:11078;Parent=Msa0889190-mRNA-1 |
| chr6_1 | exon | 56205237 | 56205314 | 56205237 | ID=Msa0889190-mRNA-1:exon:11079;Parent=Msa0889190-mRNA-1 |
| chr6_1 | exon | 56206000 | 56206054 | 56206000 | ID=Msa0889190-mRNA-1:exon:11080;Parent=Msa0889190-mRNA-1 |
| chr6_1 | exon | 56206288 | 56206368 | 56206288 | ID=Msa0889190-mRNA-1:exon:11081;Parent=Msa0889190-mRNA-1 |
| chr6_1 | exon | 56206609 | 56206748 | 56206609 | ID=Msa0889190-mRNA-1:exon:11082;Parent=Msa0889190-mRNA-1 |
| chr6_1 | exon | 56206938 | 56207236 | 56206938 | ID=Msa0889190-mRNA-1:exon:11083;Parent=Msa0889190-mRNA-1 |
| chr6_1 | five_prime_UTR | 56201554 | 56201839 | 56201554 | ID=Msa0889190-mRNA-1:five_prime_utr;Parent=Msa0889190-mRNA-1 |
| chr6_1 | CDS | 56201840 | 56202379 | 56201840 | ID=Msa0889190-mRNA-1:cds;Parent=Msa0889190-mRNA-1 |
| chr6_1 | CDS | 56202502 | 56202762 | 56202502 | ID=Msa0889190-mRNA-1:cds;Parent=Msa0889190-mRNA-1 |
| chr6_1 | CDS | 56203787 | 56203848 | 56203787 | ID=Msa0889190-mRNA-1:cds;Parent=Msa0889190-mRNA-1 |
| chr6_1 | CDS | 56204060 | 56204159 | 56204060 | ID=Msa0889190-mRNA-1:cds;Parent=Msa0889190-mRNA-1 |
| chr6_1 | CDS | 56204908 | 56205014 | 56204908 | ID=Msa0889190-mRNA-1:cds;Parent=Msa0889190-mRNA-1 |
| chr6_1 | CDS | 56205237 | 56205314 | 56205237 | ID=Msa0889190-mRNA-1:cds;Parent=Msa0889190-mRNA-1 |
| chr6_1 | CDS | 56206000 | 56206054 | 56206000 | ID=Msa0889190-mRNA-1:cds;Parent=Msa0889190-mRNA-1 |
| chr6_1 | CDS | 56206288 | 56206368 | 56206288 | ID=Msa0889190-mRNA-1:cds;Parent=Msa0889190-mRNA-1 |
| chr6_1 | CDS | 56206609 | 56206668 | 56206609 | ID=Msa0889190-mRNA-1:cds;Parent=Msa0889190-mRNA-1 |
| chr6_1 | three_prime_UTR | 56206669 | 56206748 | 56206669 | ID=Msa0889190-mRNA-1:three_prime_utr;Parent=Msa0889190-mRNA-1 |
| chr6_1 | three_prime_UTR | 56206938 | 56207236 | 56206938 | ID=Msa0889190-mRNA-1:three_prime_utr;Parent=Msa0889190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
