Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185240 | GAU10961.1 | 86.667 | 60 | 8 | 0 | 59 | 118 | 331 | 390 | 8.99e-27 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185240 | sp|Q66GI4|PRRP1_ARATH | 61.017 | 59 | 23 | 0 | 59 | 117 | 347 | 405 | 7.16e-19 | 84.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1185230 | Msa1185240 | 0.971397 | 4.243831e-133 | -8.615850e-47 |
| Msa1185240 | Msa1185250 | 0.869809 | 2.343638e-66 | -8.615850e-47 |
| Msa0889190 | Msa1185240 | -0.804972 | 1.671086e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185240 | MtrunA17_Chr2g0331251 | 78.788 | 66 | 14 | 0 | 53 | 118 | 325 | 390 | 3.81e-29 | 109 |
| Msa1185240 | MtrunA17_Chr8g0357041 | 54.237 | 59 | 27 | 0 | 59 | 117 | 275 | 333 | 3.55e-16 | 73.2 |
| Msa1185240 | MtrunA17_Chr8g0390401 | 45.455 | 66 | 36 | 0 | 52 | 117 | 447 | 512 | 8.86e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1185240 | AT2G32230.2 | 61.017 | 59 | 23 | 0 | 59 | 117 | 347 | 405 | 7.28e-20 | 84.0 |
| Msa1185240 | AT2G32230.1 | 61.017 | 59 | 23 | 0 | 59 | 117 | 347 | 405 | 7.28e-20 | 84.0 |
Find 20 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCGGCATCATTGTCTAAAT+TGG | 0.142427 | 8_1:-22133009 | Msa1185240:CDS |
| ATGTATGATGTTGTTGTTTA+TGG | 0.198942 | 8_1:-22132724 | Msa1185240:CDS |
| CAGCTGTAAACAGGTGATTA+TGG | 0.287348 | 8_1:-22132670 | Msa1185240:three_prime_UTR |
| TTATAGGACTTTGTTATGAT+TGG | 0.326524 | 8_1:-22133143 | Msa1185240:intron |
| CGCGACACGCCTATTCTTAG+AGG | 0.354213 | 8_1:+22132606 | None:intergenic |
| ATCTCTTCTGTGTTACTCTC+AGG | 0.382840 | 8_1:-22134136 | Msa1185240:intron |
| AGCTGATTTCAGCTGTAAAC+AGG | 0.418900 | 8_1:-22132679 | Msa1185240:exon |
| CAGAAGTGGCTTGAGAAGAA+TGG | 0.454597 | 8_1:-22132748 | Msa1185240:CDS |
| CCATGGACACCTCTAAGAAT+AGG | 0.459016 | 8_1:-22132615 | Msa1185240:three_prime_UTR |
| TCATTCTCGCCGCCGTTCAC+AGG | 0.475453 | 8_1:-22133811 | Msa1185240:intron |
| AAATGATCGAAGTTTGCCTT+AGG | 0.492571 | 8_1:+22132972 | None:intergenic |
| GTTGTTTATGGAGCAAATGT+AGG | 0.518443 | 8_1:-22132712 | Msa1185240:CDS |
| CCTATTCTTAGAGGTGTCCA+TGG | 0.527953 | 8_1:+22132615 | None:intergenic |
| TGTTTACAGCTGAAATCAGC+TGG | 0.533665 | 8_1:+22132681 | None:intergenic |
| AAAAGAGACTGAAAACTTCG+CGG | 0.550959 | 8_1:-22133027 | Msa1185240:CDS |
| CAATGCTCATGAGCTTCTCA+AGG | 0.603399 | 8_1:+22133060 | None:intergenic |
| CTCTAAGAATAGGCGTGTCG+CGG | 0.611181 | 8_1:-22132605 | Msa1185240:three_prime_UTR |
| CAAAAGCAGTTACCTGTGAA+CGG | 0.629108 | 8_1:+22133799 | None:intergenic |
| TCATAACAGTCTATAAACCA+TGG | 0.635600 | 8_1:-22132632 | Msa1185240:three_prime_UTR |
| AAGCAGTTACCTGTGAACGG+CGG | 0.765283 | 8_1:+22133802 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAACATAAGTTTTTATAATA+TGG | + | chr8_1:22133133-22133152 | None:intergenic | 10.0% |
| !! | GATTTATTTATGTAATTTAT+AGG | - | chr8_1:22133591-22133610 | Msa1185240:intron | 10.0% |
| !!! | TAACATAAGTTTTTATAATA+TGG | + | chr8_1:22133133-22133152 | None:intergenic | 10.0% |
| !! | GATTTATTTATGTAATTTAT+AGG | - | chr8_1:22133591-22133610 | Msa1185240:intron | 10.0% |
| !!! | TACAAAATTTTGATTTGTTT+AGG | - | chr8_1:22133031-22133050 | Msa1185240:CDS | 15.0% |
| !! | AAAAATACTAACATAAATTG+TGG | + | chr8_1:22133077-22133096 | None:intergenic | 15.0% |
| !!! | TACAAAATTTTGATTTGTTT+AGG | - | chr8_1:22133031-22133050 | Msa1185240:CDS | 15.0% |
| !! | AAAAATACTAACATAAATTG+TGG | + | chr8_1:22133077-22133096 | None:intergenic | 15.0% |
| !!! | TTCAATTGTATTTGATTTCT+AGG | - | chr8_1:22132673-22132692 | Msa1185240:three_prime_UTR | 20.0% |
| !!! | TAAGTTTTTATAATATGGTG+AGG | + | chr8_1:22133128-22133147 | None:intergenic | 20.0% |
| !! | AACTTATGTTAGTATGAAAT+TGG | - | chr8_1:22133142-22133161 | Msa1185240:intron | 20.0% |
| !! | GATAAATTAGTATAATCAAG+TGG | - | chr8_1:22133483-22133502 | Msa1185240:intron | 20.0% |
| !! | ATAAATATTACTATAGGCAT+AGG | - | chr8_1:22133954-22133973 | Msa1185240:intron | 20.0% |
| !!! | TTCAATTGTATTTGATTTCT+AGG | - | chr8_1:22132673-22132692 | Msa1185240:three_prime_UTR | 20.0% |
| !!! | TAAGTTTTTATAATATGGTG+AGG | + | chr8_1:22133128-22133147 | None:intergenic | 20.0% |
| !! | AACTTATGTTAGTATGAAAT+TGG | - | chr8_1:22133142-22133161 | Msa1185240:intron | 20.0% |
| !! | GATAAATTAGTATAATCAAG+TGG | - | chr8_1:22133483-22133502 | Msa1185240:intron | 20.0% |
| !! | ATAAATATTACTATAGGCAT+AGG | - | chr8_1:22133954-22133973 | Msa1185240:intron | 20.0% |
| !! | TCAAACTCAATTTGAAATGT+TGG | + | chr8_1:22133192-22133211 | None:intergenic | 25.0% |
| ! | CAAACTAGTTACAATTAAAG+GGG | + | chr8_1:22133235-22133254 | None:intergenic | 25.0% |
| ! | CCAAACTAGTTACAATTAAA+GGG | + | chr8_1:22133236-22133255 | None:intergenic | 25.0% |
| ! | TCCAAACTAGTTACAATTAA+AGG | + | chr8_1:22133237-22133256 | None:intergenic | 25.0% |
| ! | TTCTAACCACATTATTTGAA+TGG | + | chr8_1:22133283-22133302 | None:intergenic | 25.0% |
| ! | AGTGGCTATAATTATACATT+TGG | - | chr8_1:22133501-22133520 | Msa1185240:intron | 25.0% |
| !! | TTATAGGACTTTGTTATGAT+TGG | - | chr8_1:22133607-22133626 | Msa1185240:intron | 25.0% |
| ! | ACAAAAAATACATTCTGTCT+CGG | + | chr8_1:22133669-22133688 | None:intergenic | 25.0% |
| ! | TTTAATAACACAGTGAAGAT+TGG | + | chr8_1:22133813-22133832 | None:intergenic | 25.0% |
| !! | TTAAAAGCTGAATTTTGTGA+TGG | - | chr8_1:22133850-22133869 | Msa1185240:CDS | 25.0% |
| ! | AAAGCATAGCTATTATACAA+AGG | + | chr8_1:22133900-22133919 | None:intergenic | 25.0% |
| !!! | ATGTATGATGTTGTTGTTTA+TGG | - | chr8_1:22134026-22134045 | Msa1185240:intron | 25.0% |
| !! | TCAAACTCAATTTGAAATGT+TGG | + | chr8_1:22133192-22133211 | None:intergenic | 25.0% |
| ! | CAAACTAGTTACAATTAAAG+GGG | + | chr8_1:22133235-22133254 | None:intergenic | 25.0% |
| ! | CCAAACTAGTTACAATTAAA+GGG | + | chr8_1:22133236-22133255 | None:intergenic | 25.0% |
| ! | TCCAAACTAGTTACAATTAA+AGG | + | chr8_1:22133237-22133256 | None:intergenic | 25.0% |
| ! | TTCTAACCACATTATTTGAA+TGG | + | chr8_1:22133283-22133302 | None:intergenic | 25.0% |
| ! | AGTGGCTATAATTATACATT+TGG | - | chr8_1:22133501-22133520 | Msa1185240:intron | 25.0% |
| !! | TTATAGGACTTTGTTATGAT+TGG | - | chr8_1:22133607-22133626 | Msa1185240:intron | 25.0% |
| ! | ACAAAAAATACATTCTGTCT+CGG | + | chr8_1:22133669-22133688 | None:intergenic | 25.0% |
| ! | TTTAATAACACAGTGAAGAT+TGG | + | chr8_1:22133813-22133832 | None:intergenic | 25.0% |
| !! | TTAAAAGCTGAATTTTGTGA+TGG | - | chr8_1:22133850-22133869 | Msa1185240:CDS | 25.0% |
| ! | AAAGCATAGCTATTATACAA+AGG | + | chr8_1:22133900-22133919 | None:intergenic | 25.0% |
| !!! | ATGTATGATGTTGTTGTTTA+TGG | - | chr8_1:22134026-22134045 | Msa1185240:intron | 25.0% |
| TCATATGCAATCACAGTAAA+GGG | + | chr8_1:22132729-22132748 | None:intergenic | 30.0% | |
| TTCATATGCAATCACAGTAA+AGG | + | chr8_1:22132730-22132749 | None:intergenic | 30.0% | |
| TGTGATTGCATATGAATTCT+AGG | - | chr8_1:22132734-22132753 | Msa1185240:CDS | 30.0% | |
| ACAGAATTAAGAAATGGTTG+AGG | + | chr8_1:22132782-22132801 | None:intergenic | 30.0% | |
| TCAACCATTTCTTAATTCTG+TGG | - | chr8_1:22132781-22132800 | Msa1185240:intron | 30.0% | |
| !! | ATAATGGTGAGTTGATTCTT+TGG | - | chr8_1:22132864-22132883 | Msa1185240:intron | 30.0% |
| ! | CTTTGGTAATTTATCACACT+AGG | - | chr8_1:22132881-22132900 | Msa1185240:intron | 30.0% |
| CCCTTTAATTGTAACTAGTT+TGG | - | chr8_1:22133233-22133252 | Msa1185240:intron | 30.0% | |
| CTCTAACCATTCAAATAATG+TGG | - | chr8_1:22133274-22133293 | Msa1185240:intron | 30.0% | |
| TCTATATGACATAGTAATGC+TGG | - | chr8_1:22133342-22133361 | Msa1185240:intron | 30.0% | |
| TTCAAGAAATTGTCTTCAGT+TGG | - | chr8_1:22133918-22133937 | Msa1185240:intron | 30.0% | |
| !! | ATGTTTAACTTTTGCAGAAG+TGG | - | chr8_1:22133988-22134007 | Msa1185240:intron | 30.0% |
| TCATAACAGTCTATAAACCA+TGG | - | chr8_1:22134118-22134137 | Msa1185240:intron | 30.0% | |
| TCATATGCAATCACAGTAAA+GGG | + | chr8_1:22132729-22132748 | None:intergenic | 30.0% | |
| TTCATATGCAATCACAGTAA+AGG | + | chr8_1:22132730-22132749 | None:intergenic | 30.0% | |
| TGTGATTGCATATGAATTCT+AGG | - | chr8_1:22132734-22132753 | Msa1185240:CDS | 30.0% | |
| ACAGAATTAAGAAATGGTTG+AGG | + | chr8_1:22132782-22132801 | None:intergenic | 30.0% | |
| TCAACCATTTCTTAATTCTG+TGG | - | chr8_1:22132781-22132800 | Msa1185240:intron | 30.0% | |
| !! | ATAATGGTGAGTTGATTCTT+TGG | - | chr8_1:22132864-22132883 | Msa1185240:intron | 30.0% |
| ! | CTTTGGTAATTTATCACACT+AGG | - | chr8_1:22132881-22132900 | Msa1185240:intron | 30.0% |
| CCCTTTAATTGTAACTAGTT+TGG | - | chr8_1:22133233-22133252 | Msa1185240:intron | 30.0% | |
| CTCTAACCATTCAAATAATG+TGG | - | chr8_1:22133274-22133293 | Msa1185240:intron | 30.0% | |
| TCTATATGACATAGTAATGC+TGG | - | chr8_1:22133342-22133361 | Msa1185240:intron | 30.0% | |
| TTCAAGAAATTGTCTTCAGT+TGG | - | chr8_1:22133918-22133937 | Msa1185240:intron | 30.0% | |
| !! | ATGTTTAACTTTTGCAGAAG+TGG | - | chr8_1:22133988-22134007 | Msa1185240:intron | 30.0% |
| TCATAACAGTCTATAAACCA+TGG | - | chr8_1:22134118-22134137 | Msa1185240:intron | 30.0% | |
| CATATGCAATCACAGTAAAG+GGG | + | chr8_1:22132728-22132747 | None:intergenic | 35.0% | |
| CATTTCTTAATTCTGTGGCT+GGG | - | chr8_1:22132786-22132805 | Msa1185240:intron | 35.0% | |
| ATTTCTTAATTCTGTGGCTG+GGG | - | chr8_1:22132787-22132806 | Msa1185240:intron | 35.0% | |
| AGTCTGTTGCTGAAACATAA+TGG | - | chr8_1:22132848-22132867 | Msa1185240:intron | 35.0% | |
| AGAGTCATATGCTTAAGATG+TGG | - | chr8_1:22133312-22133331 | Msa1185240:intron | 35.0% | |
| TTGTAAACTAACCCATGCAA+AGG | + | chr8_1:22133403-22133422 | None:intergenic | 35.0% | |
| ATCCATATGCATCACACATA+AGG | + | chr8_1:22133560-22133579 | None:intergenic | 35.0% | |
| TGCATATGGATTTCAAACTG+TGG | - | chr8_1:22133569-22133588 | Msa1185240:intron | 35.0% | |
| AAAAGAGACTGAAAACTTCG+CGG | - | chr8_1:22133723-22133742 | Msa1185240:intron | 35.0% | |
| ! | AGTTTGCCTTAGGATGTTTT+TGG | + | chr8_1:22133771-22133790 | None:intergenic | 35.0% |
| AAATGATCGAAGTTTGCCTT+AGG | + | chr8_1:22133781-22133800 | None:intergenic | 35.0% | |
| GTTGTTTATGGAGCAAATGT+AGG | - | chr8_1:22134038-22134057 | Msa1185240:intron | 35.0% | |
| CATATGCAATCACAGTAAAG+GGG | + | chr8_1:22132728-22132747 | None:intergenic | 35.0% | |
| CATTTCTTAATTCTGTGGCT+GGG | - | chr8_1:22132786-22132805 | Msa1185240:intron | 35.0% | |
| ATTTCTTAATTCTGTGGCTG+GGG | - | chr8_1:22132787-22132806 | Msa1185240:intron | 35.0% | |
| AGTCTGTTGCTGAAACATAA+TGG | - | chr8_1:22132848-22132867 | Msa1185240:intron | 35.0% | |
| AGAGTCATATGCTTAAGATG+TGG | - | chr8_1:22133312-22133331 | Msa1185240:intron | 35.0% | |
| TTGTAAACTAACCCATGCAA+AGG | + | chr8_1:22133403-22133422 | None:intergenic | 35.0% | |
| ATCCATATGCATCACACATA+AGG | + | chr8_1:22133560-22133579 | None:intergenic | 35.0% | |
| TGCATATGGATTTCAAACTG+TGG | - | chr8_1:22133569-22133588 | Msa1185240:intron | 35.0% | |
| AAAAGAGACTGAAAACTTCG+CGG | - | chr8_1:22133723-22133742 | Msa1185240:intron | 35.0% | |
| ! | AGTTTGCCTTAGGATGTTTT+TGG | + | chr8_1:22133771-22133790 | None:intergenic | 35.0% |
| AAATGATCGAAGTTTGCCTT+AGG | + | chr8_1:22133781-22133800 | None:intergenic | 35.0% | |
| GTTGTTTATGGAGCAAATGT+AGG | - | chr8_1:22134038-22134057 | Msa1185240:intron | 35.0% | |
| ! | ATCTCTTCTGTGTTACTCTC+AGG | - | chr8_1:22132614-22132633 | Msa1185240:three_prime_UTR | 40.0% |
| CACAGTAAAGGGGAATTCAA+CGG | + | chr8_1:22132718-22132737 | None:intergenic | 40.0% | |
| CCAGCCACAGAATTAAGAAA+TGG | + | chr8_1:22132788-22132807 | None:intergenic | 40.0% | |
| CCATTTCTTAATTCTGTGGC+TGG | - | chr8_1:22132785-22132804 | Msa1185240:intron | 40.0% | |
| CAAAAGCAGTTACCTGTGAA+CGG | + | chr8_1:22132954-22132973 | None:intergenic | 40.0% | |
| AGTCATCTTGAACCTTTGCA+TGG | - | chr8_1:22133388-22133407 | Msa1185240:intron | 40.0% | |
| GTCATCTTGAACCTTTGCAT+GGG | - | chr8_1:22133389-22133408 | Msa1185240:intron | 40.0% | |
| TGCCTTATGTGTGATGCATA+TGG | - | chr8_1:22133555-22133574 | Msa1185240:intron | 40.0% | |
| ! | GCGAAGTTTTCAGTCTCTTT+TGG | + | chr8_1:22133724-22133743 | None:intergenic | 40.0% |
| ! | GGCAAACTTCGATCATTTTC+AGG | - | chr8_1:22133783-22133802 | Msa1185240:intron | 40.0% |
| TGTTTACAGCTGAAATCAGC+TGG | + | chr8_1:22134072-22134091 | None:intergenic | 40.0% | |
| ! | AGCTGATTTCAGCTGTAAAC+AGG | - | chr8_1:22134071-22134090 | Msa1185240:intron | 40.0% |
| CAGCTGTAAACAGGTGATTA+TGG | - | chr8_1:22134080-22134099 | Msa1185240:intron | 40.0% | |
| ! | ATCTCTTCTGTGTTACTCTC+AGG | - | chr8_1:22132614-22132633 | Msa1185240:three_prime_UTR | 40.0% |
| CACAGTAAAGGGGAATTCAA+CGG | + | chr8_1:22132718-22132737 | None:intergenic | 40.0% | |
| CCAGCCACAGAATTAAGAAA+TGG | + | chr8_1:22132788-22132807 | None:intergenic | 40.0% | |
| CCATTTCTTAATTCTGTGGC+TGG | - | chr8_1:22132785-22132804 | Msa1185240:intron | 40.0% | |
| CAAAAGCAGTTACCTGTGAA+CGG | + | chr8_1:22132954-22132973 | None:intergenic | 40.0% | |
| AGTCATCTTGAACCTTTGCA+TGG | - | chr8_1:22133388-22133407 | Msa1185240:intron | 40.0% | |
| GTCATCTTGAACCTTTGCAT+GGG | - | chr8_1:22133389-22133408 | Msa1185240:intron | 40.0% | |
| TGCCTTATGTGTGATGCATA+TGG | - | chr8_1:22133555-22133574 | Msa1185240:intron | 40.0% | |
| ! | GCGAAGTTTTCAGTCTCTTT+TGG | + | chr8_1:22133724-22133743 | None:intergenic | 40.0% |
| ! | GGCAAACTTCGATCATTTTC+AGG | - | chr8_1:22133783-22133802 | Msa1185240:intron | 40.0% |
| TGTTTACAGCTGAAATCAGC+TGG | + | chr8_1:22134072-22134091 | None:intergenic | 40.0% | |
| ! | AGCTGATTTCAGCTGTAAAC+AGG | - | chr8_1:22134071-22134090 | Msa1185240:intron | 40.0% |
| CAGCTGTAAACAGGTGATTA+TGG | - | chr8_1:22134080-22134099 | Msa1185240:intron | 40.0% | |
| CAATGCTCATGAGCTTCTCA+AGG | + | chr8_1:22133693-22133712 | None:intergenic | 45.0% | |
| CGCGGCATCATTGTCTAAAT+TGG | - | chr8_1:22133741-22133760 | Msa1185240:intron | 45.0% | |
| GGCTTGCCAAAAACATCCTA+AGG | - | chr8_1:22133762-22133781 | Msa1185240:intron | 45.0% | |
| CAGAAGTGGCTTGAGAAGAA+TGG | - | chr8_1:22134002-22134021 | Msa1185240:intron | 45.0% | |
| !! | CCTATTCTTAGAGGTGTCCA+TGG | + | chr8_1:22134138-22134157 | None:intergenic | 45.0% |
| ! | CCATGGACACCTCTAAGAAT+AGG | - | chr8_1:22134135-22134154 | Msa1185240:intron | 45.0% |
| CAATGCTCATGAGCTTCTCA+AGG | + | chr8_1:22133693-22133712 | None:intergenic | 45.0% | |
| CGCGGCATCATTGTCTAAAT+TGG | - | chr8_1:22133741-22133760 | Msa1185240:intron | 45.0% | |
| GGCTTGCCAAAAACATCCTA+AGG | - | chr8_1:22133762-22133781 | Msa1185240:intron | 45.0% | |
| CAGAAGTGGCTTGAGAAGAA+TGG | - | chr8_1:22134002-22134021 | Msa1185240:intron | 45.0% | |
| !! | CCTATTCTTAGAGGTGTCCA+TGG | + | chr8_1:22134138-22134157 | None:intergenic | 45.0% |
| ! | CCATGGACACCTCTAAGAAT+AGG | - | chr8_1:22134135-22134154 | Msa1185240:intron | 45.0% |
| !! | TAATATATAAATATTACTAT+AGG | - | chr8_1:22133948-22133967 | Msa1185240:intron | 5.0% |
| !! | TAATATATAAATATTACTAT+AGG | - | chr8_1:22133948-22133967 | Msa1185240:intron | 5.0% |
| AAGCAGTTACCTGTGAACGG+CGG | + | chr8_1:22132951-22132970 | None:intergenic | 50.0% | |
| ! | CTCTAAGAATAGGCGTGTCG+CGG | - | chr8_1:22134145-22134164 | Msa1185240:CDS | 50.0% |
| AAGCAGTTACCTGTGAACGG+CGG | + | chr8_1:22132951-22132970 | None:intergenic | 50.0% | |
| ! | CTCTAAGAATAGGCGTGTCG+CGG | - | chr8_1:22134145-22134164 | Msa1185240:CDS | 50.0% |
| CGCGACACGCCTATTCTTAG+AGG | + | chr8_1:22134147-22134166 | None:intergenic | 55.0% | |
| CGCGACACGCCTATTCTTAG+AGG | + | chr8_1:22134147-22134166 | None:intergenic | 55.0% | |
| TCATTCTCGCCGCCGTTCAC+AGG | - | chr8_1:22132939-22132958 | Msa1185240:intron | 60.0% | |
| TCATTCTCGCCGCCGTTCAC+AGG | - | chr8_1:22132939-22132958 | Msa1185240:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 22132595 | 22134177 | 22132595 | ID=Msa1185240;Name=Msa1185240 |
| chr8_1 | mRNA | 22132595 | 22134177 | 22132595 | ID=Msa1185240-mRNA-1;Parent=Msa1185240;Name=Msa1185240-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.33|0.25|0.5|1|0.75|4|101|120 |
| chr8_1 | exon | 22132595 | 22132767 | 22132595 | ID=Msa1185240-mRNA-1:exon:8214;Parent=Msa1185240-mRNA-1 |
| chr8_1 | exon | 22132968 | 22133159 | 22132968 | ID=Msa1185240-mRNA-1:exon:8213;Parent=Msa1185240-mRNA-1 |
| chr8_1 | exon | 22133812 | 22133869 | 22133812 | ID=Msa1185240-mRNA-1:exon:8212;Parent=Msa1185240-mRNA-1 |
| chr8_1 | exon | 22134137 | 22134177 | 22134137 | ID=Msa1185240-mRNA-1:exon:8211;Parent=Msa1185240-mRNA-1 |
| chr8_1 | CDS | 22134137 | 22134177 | 22134137 | ID=Msa1185240-mRNA-1:cds;Parent=Msa1185240-mRNA-1 |
| chr8_1 | CDS | 22133812 | 22133869 | 22133812 | ID=Msa1185240-mRNA-1:cds;Parent=Msa1185240-mRNA-1 |
| chr8_1 | CDS | 22132968 | 22133159 | 22132968 | ID=Msa1185240-mRNA-1:cds;Parent=Msa1185240-mRNA-1 |
| chr8_1 | CDS | 22132696 | 22132767 | 22132696 | ID=Msa1185240-mRNA-1:cds;Parent=Msa1185240-mRNA-1 |
| chr8_1 | three_prime_UTR | 22132595 | 22132695 | 22132595 | ID=Msa1185240-mRNA-1:three_prime_utr;Parent=Msa1185240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
