Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0889340 | XP_004503722.1 | 87.143 | 280 | 36 | 0 | 1 | 280 | 178 | 457 | 4.79e-177 | 508 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0889340 | sp|Q9ZNX6|GSH1_MEDTR | 85.714 | 280 | 40 | 0 | 1 | 280 | 182 | 461 | 1.18e-177 | 503 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0889340 | A0A1S2YFV5 | 87.143 | 280 | 36 | 0 | 1 | 280 | 178 | 457 | 2.29e-177 | 508 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0883050 | Msa0889340 | 0.826891 | 2.115348e-54 | -8.615850e-47 |
| Msa0889340 | Msa0910410 | 0.818819 | 1.606743e-52 | -8.615850e-47 |
| Msa0889340 | Msa0910420 | 0.849484 | 3.140290e-60 | -8.615850e-47 |
| Msa0889340 | Msa0948280 | 0.858178 | 9.845352e-63 | -8.615850e-47 |
| Msa0889340 | Msa0984680 | 0.837459 | 5.133178e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0889340 | MtrunA17_Chr8g0386791 | 85.714 | 280 | 40 | 0 | 1 | 280 | 182 | 461 | 8.69e-179 | 503 |
| Msa0889340 | MtrunA17_Chr5g0397471 | 65.957 | 282 | 96 | 0 | 1 | 282 | 186 | 467 | 4.80e-137 | 397 |
| Msa0889340 | MtrunA17_Chr5g0397441 | 66.667 | 120 | 40 | 0 | 163 | 282 | 1 | 120 | 4.56e-52 | 168 |
| Msa0889340 | MtrunA17_Chr5g0397431 | 60.976 | 123 | 48 | 0 | 8 | 130 | 1 | 123 | 1.54e-49 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0889340 | AT4G23100.2 | 83.696 | 276 | 45 | 0 | 1 | 276 | 196 | 471 | 5.86e-172 | 484 |
| Msa0889340 | AT4G23100.3 | 81.979 | 283 | 51 | 0 | 1 | 283 | 196 | 478 | 2.99e-171 | 484 |
| Msa0889340 | AT4G23100.1 | 81.979 | 283 | 51 | 0 | 1 | 283 | 196 | 478 | 2.99e-171 | 484 |
Find 72 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAAGCTGTTGCTGAGAAAA+TGG | 0.218963 | 6_1:+56479692 | Msa0889340:CDS |
| GATAAGTTTATGTGCTTTAC+CGG | 0.296378 | 6_1:+56483220 | Msa0889340:CDS |
| TAATGATTGGGAGAATCATT+TGG | 0.297841 | 6_1:+56483021 | Msa0889340:CDS |
| GGTCAGGCTAAAGAGATATT+TGG | 0.302209 | 6_1:+56483169 | Msa0889340:intron |
| CCACACCGAACCACCTTTGC+TGG | 0.317688 | 6_1:-56484129 | None:intergenic |
| TATGTGCTTTACCGGCATTT+TGG | 0.317971 | 6_1:+56483228 | Msa0889340:CDS |
| CTCTGGCAGGCTACCAAAAC+TGG | 0.342219 | 6_1:+56484013 | Msa0889340:intron |
| TGGTGTCTTTAGACCAGTTT+TGG | 0.362938 | 6_1:-56484026 | None:intergenic |
| AATTACCATCTCTTAATGAT+TGG | 0.363029 | 6_1:+56483008 | Msa0889340:CDS |
| AAAACTACCTTTGGTATCAT+AGG | 0.367052 | 6_1:-56479768 | None:intergenic |
| AAGACAAATGCTGAGGAATA+AGG | 0.371420 | 6_1:+56483544 | Msa0889340:CDS |
| CTTTGAGTCCAGACTTTGGC+TGG | 0.374549 | 6_1:-56479740 | None:intergenic |
| ACTGTACTGGAATGACCTTC+AGG | 0.375014 | 6_1:+56482816 | Msa0889340:CDS |
| AATGATTGGGAGAATCATTT+GGG | 0.394541 | 6_1:+56483022 | Msa0889340:CDS |
| CAAGGCTAGCACGAAACTTC+CGG | 0.407747 | 6_1:-56482208 | None:intergenic |
| ATAGGTTTCCAGCCAAAGTC+TGG | 0.408156 | 6_1:+56479732 | Msa0889340:CDS |
| GTTGCTGAGAAAATGGGAAT+TGG | 0.415295 | 6_1:+56479699 | Msa0889340:CDS |
| TAAACTCTTACAGGTCAATC+TGG | 0.415633 | 6_1:+56482160 | Msa0889340:intron |
| GCAAATTCACCCTTCACAAA+TGG | 0.427211 | 6_1:+56482342 | Msa0889340:CDS |
| ATTACCATCTCTTAATGATT+GGG | 0.431120 | 6_1:+56483009 | Msa0889340:CDS |
| GGAAAACTACCTTGTATTCC+CGG | 0.450166 | 6_1:+56482983 | Msa0889340:CDS |
| TATTAGATTTGACAGCAGAT+TGG | 0.463933 | 6_1:+56483510 | Msa0889340:CDS |
| AGCCCACGAGAACCAACTTT+GGG | 0.464046 | 6_1:-56481997 | None:intergenic |
| AAGAAACACATCGACTGTAC+TGG | 0.468991 | 6_1:+56482803 | Msa0889340:CDS |
| CTCATACTGACAAACCCATT+GGG | 0.474705 | 6_1:-56482369 | None:intergenic |
| AAAGCTGTTGCTGAGAAAAT+GGG | 0.478931 | 6_1:+56479693 | Msa0889340:CDS |
| AACAAATACATGCCCAAAGT+TGG | 0.479007 | 6_1:+56481985 | Msa0889340:CDS |
| TATTGCCAGCAAAGGTGGTT+CGG | 0.483521 | 6_1:+56484124 | Msa0889340:CDS |
| ACTGAAGCATGTTGCTGAAG+AGG | 0.484682 | 6_1:+56484063 | Msa0889340:CDS |
| TCACAAATGGAAAGCCCAAT+GGG | 0.491400 | 6_1:+56482355 | Msa0889340:CDS |
| ATTGGGCTTTCCATTTGTGA+AGG | 0.492044 | 6_1:-56482352 | None:intergenic |
| AAGCCCACGAGAACCAACTT+TGG | 0.494264 | 6_1:-56481998 | None:intergenic |
| TTCAGTAAACCATCTCGAAA+TGG | 0.494326 | 6_1:-56484046 | None:intergenic |
| AAAGAATCATCGAAAACAAA+AGG | 0.495048 | 6_1:-56482523 | None:intergenic |
| TGCTGAAGAGGTTCTAAAGT+TGG | 0.497850 | 6_1:+56484075 | Msa0889340:CDS |
| CACCTGTACAGTGCATGTCC+TGG | 0.499549 | 6_1:-56482031 | None:intergenic |
| GTGGGCTTGACGTGATGTCC+AGG | 0.504094 | 6_1:+56482013 | Msa0889340:CDS |
| GTTCTGAAGCTGACATGATC+CGG | 0.509031 | 6_1:+56482189 | Msa0889340:CDS |
| ATGTCTTTGAGTCCAGACTT+TGG | 0.514374 | 6_1:-56479744 | None:intergenic |
| ATGCCCAAAGTTGGTTCTCG+TGG | 0.516817 | 6_1:+56481994 | Msa0889340:CDS |
| TTGGAGATGAGAGGTGCTGA+TGG | 0.517199 | 6_1:+56483188 | Msa0889340:CDS |
| TCTCATACTGACAAACCCAT+TGG | 0.521795 | 6_1:-56482370 | None:intergenic |
| TTGGGCTTTCCATTTGTGAA+GGG | 0.523652 | 6_1:-56482351 | None:intergenic |
| ATTAAGAGATGGTAATTCAC+CGG | 0.524008 | 6_1:-56483002 | None:intergenic |
| TTCTTACGGGCTGCAATGCA+AGG | 0.524114 | 6_1:-56482226 | None:intergenic |
| GGTAATTCACCGGGAATACA+AGG | 0.526372 | 6_1:-56482992 | None:intergenic |
| TTTGCTGTAGGACTTCTTGG+CGG | 0.529779 | 6_1:+56482961 | Msa0889340:intron |
| CTGTACTGGAATGACCTTCA+GGG | 0.536065 | 6_1:+56482817 | Msa0889340:CDS |
| TTGCTGTAGGACTTCTTGGC+GGG | 0.540519 | 6_1:+56482962 | Msa0889340:intron |
| TTCACAAATGGAAAGCCCAA+TGG | 0.543962 | 6_1:+56482354 | Msa0889340:CDS |
| TTTGTTATTGCCAGCAAAGG+TGG | 0.547859 | 6_1:+56484119 | Msa0889340:CDS |
| TGCCCAAAGTTGGTTCTCGT+GGG | 0.557825 | 6_1:+56481995 | Msa0889340:CDS |
| CTAAAGACACCATTTCGAGA+TGG | 0.568445 | 6_1:+56484037 | Msa0889340:CDS |
| AAGATAGATGGGAACCCTGA+AGG | 0.577010 | 6_1:-56482831 | None:intergenic |
| GTCCAGGACATGCACTGTAC+AGG | 0.579109 | 6_1:+56482029 | Msa0889340:CDS |
| CCGCCACTTACCCAAAATGC+CGG | 0.585206 | 6_1:-56483239 | None:intergenic |
| TTTGGGCACTATATTTCCTG+AGG | 0.591776 | 6_1:+56483039 | Msa0889340:CDS |
| TTCCGATAGACAAAACACAT+TGG | 0.593142 | 6_1:-56482779 | None:intergenic |
| AAAGCACATAAACTTATCAT+CGG | 0.603787 | 6_1:-56483215 | None:intergenic |
| GATGTTGATGAGGACCGCAC+AGG | 0.611065 | 6_1:+56482493 | Msa0889340:CDS |
| TTAAGAGATGGTAATTCACC+GGG | 0.614513 | 6_1:-56483001 | None:intergenic |
| TTCTCCCAATCATTAAGAGA+TGG | 0.617147 | 6_1:-56483013 | None:intergenic |
| AAGAGATATTTGGAGATGAG+AGG | 0.618382 | 6_1:+56483179 | Msa0889340:CDS |
| GAGATGAGAGGTGCTGATGG+AGG | 0.629565 | 6_1:+56483191 | Msa0889340:CDS |
| ATGGGTTTGTCAGTATGAGA+AGG | 0.631446 | 6_1:+56482373 | Msa0889340:CDS |
| AGAGGTTCTAAAGTTGGCAA+AGG | 0.632714 | 6_1:+56484081 | Msa0889340:CDS |
| AGATGAGAGGTGCTGATGGA+GGG | 0.642357 | 6_1:+56483192 | Msa0889340:CDS |
| CAAAAGGCAGCATGCCTGTG+CGG | 0.646851 | 6_1:-56482507 | None:intergenic |
| AGACATGCCTATGATACCAA+AGG | 0.648416 | 6_1:+56479761 | Msa0889340:CDS |
| TATTTGGACTGATGTTGATG+AGG | 0.655732 | 6_1:+56482483 | Msa0889340:CDS |
| CCAGCAAAGGTGGTTCGGTG+TGG | 0.661414 | 6_1:+56484129 | Msa0889340:CDS |
| CAGAAGAAAGACAAATGCTG+AGG | 0.668955 | 6_1:+56483537 | Msa0889340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTAAAATTTAAGAAAAT+GGG | - | chr6_1:56482459-56482478 | None:intergenic | 10.0% |
| !! | TTATATTTCTTATTCAACAA+GGG | - | chr6_1:56480651-56480670 | None:intergenic | 15.0% |
| !!! | TCTAATTTAAGATTGTATTT+TGG | + | chr6_1:56482095-56482114 | Msa0889340:intron | 15.0% |
| !!! | AAATATATCATTGTTTCTTA+CGG | - | chr6_1:56482243-56482262 | None:intergenic | 15.0% |
| !!! | CTGTTTAAAATTTAAGAAAA+TGG | - | chr6_1:56482460-56482479 | None:intergenic | 15.0% |
| !!! | AAATTTTAAACAGTCATATT+TGG | + | chr6_1:56482467-56482486 | Msa0889340:intron | 15.0% |
| !!! | ATAAAAATAAAACCGTTTTT+GGG | - | chr6_1:56483640-56483659 | None:intergenic | 15.0% |
| !!! | AATAAAAATAAAACCGTTTT+TGG | - | chr6_1:56483641-56483660 | None:intergenic | 15.0% |
| !! | AAATATTAAATTAATGCTAC+TGG | - | chr6_1:56483953-56483972 | None:intergenic | 15.0% |
| !! | AAGTTTCTTAATACAATTCA+AGG | - | chr6_1:56479817-56479836 | None:intergenic | 20.0% |
| !!! | ATGATTTCAAAATGAAGTTT+TGG | - | chr6_1:56480225-56480244 | None:intergenic | 20.0% |
| !! | TCTTTCAAAAAAAAGAAGTA+AGG | + | chr6_1:56480564-56480583 | Msa0889340:intron | 20.0% |
| !! | GTTATATTTCTTATTCAACA+AGG | - | chr6_1:56480652-56480671 | None:intergenic | 20.0% |
| !!! | TGATTCATTTTTAGCTTTAA+TGG | + | chr6_1:56481902-56481921 | Msa0889340:intron | 20.0% |
| !!! | AATATATCATTGTTTCTTAC+GGG | - | chr6_1:56482242-56482261 | None:intergenic | 20.0% |
| !!! | TATTTGATGATCCTAATATT+AGG | + | chr6_1:56482560-56482579 | Msa0889340:intron | 20.0% |
| !! | CAAGAATATTAAAGATAGAT+GGG | - | chr6_1:56482845-56482864 | None:intergenic | 20.0% |
| !! | ACAAGAATATTAAAGATAGA+TGG | - | chr6_1:56482846-56482865 | None:intergenic | 20.0% |
| !! | ATATTCTTGTCATCTTAATT+AGG | + | chr6_1:56482856-56482875 | Msa0889340:intron | 20.0% |
| !! | TTGTGTTTATAGTAACAAAA+TGG | - | chr6_1:56483134-56483153 | None:intergenic | 20.0% |
| !!! | AACTAACTTAATCTTTAAGA+CGG | - | chr6_1:56483906-56483925 | None:intergenic | 20.0% |
| !! | AAAATGGGAATTGGATTTTT+GGG | + | chr6_1:56479708-56479727 | Msa0889340:CDS | 25.0% |
| !! | TATTGATAACTTAGAAGTGA+CGG | - | chr6_1:56480025-56480044 | None:intergenic | 25.0% |
| ! | AAGTTATCAATAACTACTAG+TGG | + | chr6_1:56480033-56480052 | Msa0889340:intron | 25.0% |
| ! | ATTCCACTTTCACAATTAAT+AGG | - | chr6_1:56480458-56480477 | None:intergenic | 25.0% |
| !!! | ATCTAGGATAACTTCTATTT+TGG | + | chr6_1:56480476-56480495 | Msa0889340:intron | 25.0% |
| !!! | AACTTCTATTTTGGTAATCT+CGG | + | chr6_1:56480485-56480504 | Msa0889340:intron | 25.0% |
| !!! | TATGTTGATGATGACATTTT+CGG | - | chr6_1:56480525-56480544 | None:intergenic | 25.0% |
| ! | AAAAAAAAGAAGTAAGGTTG+TGG | + | chr6_1:56480570-56480589 | Msa0889340:intron | 25.0% |
| ! | TAAAACAGGAAAGTTAGAAA+TGG | - | chr6_1:56480687-56480706 | None:intergenic | 25.0% |
| !!! | TTCCTGTTTTAAACGATATA+AGG | + | chr6_1:56480696-56480715 | Msa0889340:intron | 25.0% |
| !! | ATCCTTATATCGTTTAAAAC+AGG | - | chr6_1:56480701-56480720 | None:intergenic | 25.0% |
| ! | GTATATGGTAACAAATATCA+AGG | - | chr6_1:56480899-56480918 | None:intergenic | 25.0% |
| ! | GAGGAAAAAAAAAATTCAAG+AGG | + | chr6_1:56481010-56481029 | Msa0889340:intron | 25.0% |
| !! | TTGTTATTATCATGTCACTT+CGG | + | chr6_1:56481612-56481631 | Msa0889340:intron | 25.0% |
| ! | CAAAATACTAGTATAAAGAG+TGG | - | chr6_1:56481764-56481783 | None:intergenic | 25.0% |
| ! | ATATTAACCTAAACTCTTAC+AGG | + | chr6_1:56482151-56482170 | Msa0889340:intron | 25.0% |
| ! | AAAGAATCATCGAAAACAAA+AGG | - | chr6_1:56482526-56482545 | None:intergenic | 25.0% |
| !!! | TTTGTTTTCGATGATTCTTT+CGG | + | chr6_1:56482526-56482545 | Msa0889340:CDS | 25.0% |
| !! | TCTTAGATCTTTTATCCTTT+TGG | + | chr6_1:56482595-56482614 | Msa0889340:intron | 25.0% |
| ! | ATTCAGTGATCTTTCATATA+AGG | + | chr6_1:56482620-56482639 | Msa0889340:intron | 25.0% |
| ! | TTCAGTGATCTTTCATATAA+GGG | + | chr6_1:56482621-56482640 | Msa0889340:intron | 25.0% |
| !!! | TTTGTTTTTGTTTTTGCTGT+AGG | + | chr6_1:56482949-56482968 | Msa0889340:intron | 25.0% |
| ! | AATTACCATCTCTTAATGAT+TGG | + | chr6_1:56483008-56483027 | Msa0889340:CDS | 25.0% |
| ! | ATTACCATCTCTTAATGATT+GGG | + | chr6_1:56483009-56483028 | Msa0889340:CDS | 25.0% |
| ! | AAAGCACATAAACTTATCAT+CGG | - | chr6_1:56483218-56483237 | None:intergenic | 25.0% |
| ! | TACAAAAATCATGTAGTAGA+AGG | - | chr6_1:56483265-56483284 | None:intergenic | 25.0% |
| ! | TACAAATGAAAGATATTGCA+AGG | - | chr6_1:56483580-56483599 | None:intergenic | 25.0% |
| ! | TAAATTTGTAAACTGACAAC+TGG | + | chr6_1:56483985-56484004 | Msa0889340:intron | 25.0% |
| ! | GAAAATGGGAATTGGATTTT+TGG | + | chr6_1:56479707-56479726 | Msa0889340:CDS | 30.0% |
| ! | AAATGGGAATTGGATTTTTG+GGG | + | chr6_1:56479709-56479728 | Msa0889340:CDS | 30.0% |
| AAAACTACCTTTGGTATCAT+AGG | - | chr6_1:56479771-56479790 | None:intergenic | 30.0% | |
| GGAGAAATAAAAACTACCTT+TGG | - | chr6_1:56479780-56479799 | None:intergenic | 30.0% | |
| CAAAGTGACAATATATCTCA+AGG | + | chr6_1:56480121-56480140 | Msa0889340:intron | 30.0% | |
| TAGCAATATGTAATGCACTT+TGG | + | chr6_1:56480175-56480194 | Msa0889340:intron | 30.0% | |
| !!! | TTGCAGCTTTTGAAATGAAA+TGG | - | chr6_1:56480264-56480283 | None:intergenic | 30.0% |
| !! | AGAAACAAAGCATTGATTCA+AGG | - | chr6_1:56480321-56480340 | None:intergenic | 30.0% |
| TTGCCTATTAATTGTGAAAG+TGG | + | chr6_1:56480452-56480471 | Msa0889340:intron | 30.0% | |
| TAATTGTGAAAGTGGAATCT+AGG | + | chr6_1:56480460-56480479 | Msa0889340:intron | 30.0% | |
| ATCATCAACATACACAAGTA+AGG | + | chr6_1:56480533-56480552 | Msa0889340:intron | 30.0% | |
| CTCAGTTTACATACTTGATT+AGG | + | chr6_1:56480724-56480743 | Msa0889340:intron | 30.0% | |
| CTTGAGAAGAGTTTATATAG+AGG | + | chr6_1:56480828-56480847 | Msa0889340:intron | 30.0% | |
| TCAATCTCAATCATCTCAAT+CGG | + | chr6_1:56481239-56481258 | Msa0889340:intron | 30.0% | |
| AATCATTCATTTCGTCACTT+CGG | + | chr6_1:56481390-56481409 | Msa0889340:intron | 30.0% | |
| AATCATTCATTTCGTCACTT+CGG | + | chr6_1:56481390-56481409 | Msa0889340:intron | 30.0% | |
| AATCATTCATTTCGTCACTT+CGG | + | chr6_1:56481390-56481409 | Msa0889340:intron | 30.0% | |
| !! | CGGTTGTTATGTTGTTATTT+CGG | + | chr6_1:56481632-56481651 | Msa0889340:intron | 30.0% |
| AATCATTCATTTCGTCACTT+CGG | + | chr6_1:56481390-56481409 | Msa0889340:intron | 30.0% | |
| ATACTAGTATAAAGAGTGGT+GGG | - | chr6_1:56481760-56481779 | None:intergenic | 30.0% | |
| AATACTAGTATAAAGAGTGG+TGG | - | chr6_1:56481761-56481780 | None:intergenic | 30.0% | |
| CACTTCTATGCTGTTAAAAA+AGG | - | chr6_1:56481818-56481837 | None:intergenic | 30.0% | |
| !!! | CTTTTTTAACAGCATAGAAG+TGG | + | chr6_1:56481816-56481835 | Msa0889340:intron | 30.0% |
| CTTTAATGGTTCAATTCAAC+TGG | + | chr6_1:56481916-56481935 | Msa0889340:intron | 30.0% | |
| TCTCTAACTTTGCTTGATTA+AGG | + | chr6_1:56482425-56482444 | Msa0889340:intron | 30.0% | |
| ! | TTGTTTTCGATGATTCTTTC+GGG | + | chr6_1:56482527-56482546 | Msa0889340:CDS | 30.0% |
| TTTCCAAACTCTCTAATTGT+AGG | + | chr6_1:56482723-56482742 | Msa0889340:intron | 30.0% | |
| AAACCTACAATTAGAGAGTT+TGG | - | chr6_1:56482729-56482748 | None:intergenic | 30.0% | |
| ! | TTCCAATGTGTTTTGTCTAT+CGG | + | chr6_1:56482777-56482796 | Msa0889340:CDS | 30.0% |
| ATTAAGAGATGGTAATTCAC+CGG | - | chr6_1:56483005-56483024 | None:intergenic | 30.0% | |
| TAATGATTGGGAGAATCATT+TGG | + | chr6_1:56483021-56483040 | Msa0889340:CDS | 30.0% | |
| AATGATTGGGAGAATCATTT+GGG | + | chr6_1:56483022-56483041 | Msa0889340:CDS | 30.0% | |
| !!! | TCCTGAGGTTTGTTTTATAT+TGG | + | chr6_1:56483054-56483073 | Msa0889340:intron | 30.0% |
| ACCAATATAAAACAAACCTC+AGG | - | chr6_1:56483058-56483077 | None:intergenic | 30.0% | |
| GATAAGTTTATGTGCTTTAC+CGG | + | chr6_1:56483220-56483239 | Msa0889340:CDS | 30.0% | |
| TTCTATGAACTGCTTCAATT+TGG | + | chr6_1:56483413-56483432 | Msa0889340:intron | 30.0% | |
| ! | GTAATTTTTCTGATTGTTCC+AGG | + | chr6_1:56483451-56483470 | Msa0889340:intron | 30.0% |
| TATTAGATTTGACAGCAGAT+TGG | + | chr6_1:56483510-56483529 | Msa0889340:CDS | 30.0% | |
| ATTAAATACAACAGTCAAGC+AGG | + | chr6_1:56483658-56483677 | Msa0889340:intron | 30.0% | |
| !!! | ATTGGTTTTGTAATCGAGAA+AGG | - | chr6_1:56483704-56483723 | None:intergenic | 30.0% |
| AACGTTGTATTTAAGAGGAT+TGG | - | chr6_1:56483722-56483741 | None:intergenic | 30.0% | |
| CTATGAACGTTGTATTTAAG+AGG | - | chr6_1:56483727-56483746 | None:intergenic | 30.0% | |
| ! | CCATTTTCATTTGACACTTT+TGG | - | chr6_1:56483828-56483847 | None:intergenic | 30.0% |
| !! | CCAAAAGTGTCAAATGAAAA+TGG | + | chr6_1:56483825-56483844 | Msa0889340:intron | 30.0% |
| TAAAGCTGTTGCTGAGAAAA+TGG | + | chr6_1:56479692-56479711 | Msa0889340:CDS | 35.0% | |
| AAAGCTGTTGCTGAGAAAAT+GGG | + | chr6_1:56479693-56479712 | Msa0889340:CDS | 35.0% | |
| !! | TTGTCACTTTGTACGAAACA+AGG | - | chr6_1:56480112-56480131 | None:intergenic | 35.0% |
| TGGTTGTCAATCTAAAAGAC+TGG | + | chr6_1:56480195-56480214 | Msa0889340:intron | 35.0% | |
| GGTTGTCAATCTAAAAGACT+GGG | + | chr6_1:56480196-56480215 | Msa0889340:intron | 35.0% | |
| ! | TTGGCTCTTCTCAAATATCA+TGG | - | chr6_1:56480351-56480370 | None:intergenic | 35.0% |
| ACTGGCATATGTTTCATTCT+TGG | - | chr6_1:56480370-56480389 | None:intergenic | 35.0% | |
| GATAACAGAAGATCTATCAC+TGG | - | chr6_1:56480388-56480407 | None:intergenic | 35.0% | |
| GGCAAGTTAAAATGCTTTCT+TGG | - | chr6_1:56480437-56480456 | None:intergenic | 35.0% | |
| !!! | TATTTTGGTAATCTCGGCAA+GGG | + | chr6_1:56480491-56480510 | Msa0889340:intron | 35.0% |
| AACATACACAAGTAAGGTTG+TGG | + | chr6_1:56480539-56480558 | Msa0889340:intron | 35.0% | |
| CATACTTGATTAGGTTTCTG+AGG | + | chr6_1:56480733-56480752 | Msa0889340:intron | 35.0% | |
| AACCCTATGGTATATGTTAG+CGG | + | chr6_1:56480761-56480780 | Msa0889340:intron | 35.0% | |
| GAATCATATCTATCCGATGT+GGG | - | chr6_1:56480809-56480828 | None:intergenic | 35.0% | |
| AGAATCATATCTATCCGATG+TGG | - | chr6_1:56480810-56480829 | None:intergenic | 35.0% | |
| GAGAAGAGTTTATATAGAGG+AGG | + | chr6_1:56480831-56480850 | Msa0889340:intron | 35.0% | |
| TTCAGCAGAAGATGTGTATA+TGG | - | chr6_1:56480914-56480933 | None:intergenic | 35.0% | |
| AAAATTCAAGAGGAGTCAAG+AGG | + | chr6_1:56481020-56481039 | Msa0889340:intron | 35.0% | |
| TATATGGAGCAAGTCATGTT+AGG | + | chr6_1:56481874-56481893 | Msa0889340:intron | 35.0% | |
| !! | TCTGAATTTTTGTTGTGCTC+AGG | + | chr6_1:56481945-56481964 | Msa0889340:intron | 35.0% |
| AACAAATACATGCCCAAAGT+TGG | + | chr6_1:56481985-56482004 | Msa0889340:CDS | 35.0% | |
| AGATTGACCTGTAAGAGTTT+AGG | - | chr6_1:56482161-56482180 | None:intergenic | 35.0% | |
| TAAACTCTTACAGGTCAATC+TGG | + | chr6_1:56482160-56482179 | Msa0889340:intron | 35.0% | |
| TATTTGGACTGATGTTGATG+AGG | + | chr6_1:56482483-56482502 | Msa0889340:CDS | 35.0% | |
| AAGATCTAAGAAAAGCCATG+AGG | - | chr6_1:56482586-56482605 | None:intergenic | 35.0% | |
| AAGATCACTGAATCACCAAA+AGG | - | chr6_1:56482613-56482632 | None:intergenic | 35.0% | |
| TTCCGATAGACAAAACACAT+TGG | - | chr6_1:56482782-56482801 | None:intergenic | 35.0% | |
| AAACAAACAGTCAATTCGCT+CGG | - | chr6_1:56482936-56482955 | None:intergenic | 35.0% | |
| TTAAGAGATGGTAATTCACC+GGG | - | chr6_1:56483004-56483023 | None:intergenic | 35.0% | |
| TTCTCCCAATCATTAAGAGA+TGG | - | chr6_1:56483016-56483035 | None:intergenic | 35.0% | |
| ACACAAACATTACTCTATCC+AGG | + | chr6_1:56483148-56483167 | Msa0889340:intron | 35.0% | |
| AAGAGATATTTGGAGATGAG+AGG | + | chr6_1:56483179-56483198 | Msa0889340:CDS | 35.0% | |
| GATATAGATCCTCTCAGAAT+AGG | - | chr6_1:56483319-56483338 | None:intergenic | 35.0% | |
| ACTAAGAAGGATCGGATATA+TGG | - | chr6_1:56483346-56483365 | None:intergenic | 35.0% | |
| ATATATCCGATCCTTCTTAG+TGG | + | chr6_1:56483345-56483364 | Msa0889340:intron | 35.0% | |
| ! | TTTTTCTGATTGTTCCAGGT+AGG | + | chr6_1:56483455-56483474 | Msa0889340:intron | 35.0% |
| ! | TTTTCTGATTGTTCCAGGTA+GGG | + | chr6_1:56483456-56483475 | Msa0889340:intron | 35.0% |
| CATCATATAATAACCCTACC+TGG | - | chr6_1:56483472-56483491 | None:intergenic | 35.0% | |
| AAGACAAATGCTGAGGAATA+AGG | + | chr6_1:56483544-56483563 | Msa0889340:CDS | 35.0% | |
| !!! | TCTAGCTTGCTTAAGCTTTT+AGG | - | chr6_1:56483611-56483630 | None:intergenic | 35.0% |
| TGTAATCGAGAAAGGATTAG+TGG | - | chr6_1:56483696-56483715 | None:intergenic | 35.0% | |
| CCTTCTACAAAGAGTTCAAA+GGG | - | chr6_1:56483781-56483800 | None:intergenic | 35.0% | |
| ACCTTCTACAAAGAGTTCAA+AGG | - | chr6_1:56483782-56483801 | None:intergenic | 35.0% | |
| TTCAGTAAACCATCTCGAAA+TGG | - | chr6_1:56484049-56484068 | None:intergenic | 35.0% | |
| !!! | GTTTTTGTTATTGCCAGCAA+AGG | + | chr6_1:56484116-56484135 | Msa0889340:CDS | 35.0% |
| GTTGCTGAGAAAATGGGAAT+TGG | + | chr6_1:56479699-56479718 | Msa0889340:CDS | 40.0% | |
| !! | GGAATTGGATTTTTGGGGAT+AGG | + | chr6_1:56479714-56479733 | Msa0889340:CDS | 40.0% |
| ATGTCTTTGAGTCCAGACTT+TGG | - | chr6_1:56479747-56479766 | None:intergenic | 40.0% | |
| AGACATGCCTATGATACCAA+AGG | + | chr6_1:56479761-56479780 | Msa0889340:CDS | 40.0% | |
| TTCAAGGACATGCAACAATG+AGG | - | chr6_1:56479801-56479820 | None:intergenic | 40.0% | |
| TGATCTTCTGTGGATCAACA+TGG | - | chr6_1:56479959-56479978 | None:intergenic | 40.0% | |
| ! | GGTTAGGAAACAGTTAGCTT+AGG | - | chr6_1:56479985-56480004 | None:intergenic | 40.0% |
| TATGACTGTTAGAGGTGGTT+AGG | - | chr6_1:56480001-56480020 | None:intergenic | 40.0% | |
| !!! | GCTTGTTTTGCACTTGAAAC+TGG | + | chr6_1:56480060-56480079 | Msa0889340:intron | 40.0% |
| TGATTCAAGGTCATCAAGTG+TGG | - | chr6_1:56480308-56480327 | None:intergenic | 40.0% | |
| GATCTTCTGTTATCCATGAC+TGG | + | chr6_1:56480394-56480413 | Msa0889340:intron | 40.0% | |
| GAAGTAGCATATTCCAGTCA+TGG | - | chr6_1:56480410-56480429 | None:intergenic | 40.0% | |
| !!! | CTATTTTGGTAATCTCGGCA+AGG | + | chr6_1:56480490-56480509 | Msa0889340:intron | 40.0% |
| !!! | GTTGATGATGACATTTTCGG+TGG | - | chr6_1:56480522-56480541 | None:intergenic | 40.0% |
| ! | AAAGAGAGTGTGATCATGAG+AGG | + | chr6_1:56480615-56480634 | Msa0889340:intron | 40.0% |
| ATATGTTAGCGGCCAAAACT+CGG | + | chr6_1:56480772-56480791 | Msa0889340:intron | 40.0% | |
| CCTTACAAAACCAGCTTGTA+TGG | - | chr6_1:56480866-56480885 | None:intergenic | 40.0% | |
| !!! | CCATACAAGCTGGTTTTGTA+AGG | + | chr6_1:56480863-56480882 | Msa0889340:intron | 40.0% |
| !!! | ACAAGCTGGTTTTGTAAGGA+TGG | + | chr6_1:56480867-56480886 | Msa0889340:intron | 40.0% |
| !!! | CAAGCTGGTTTTGTAAGGAT+GGG | + | chr6_1:56480868-56480887 | Msa0889340:intron | 40.0% |
| !!! | TGGTTTTGTAAGGATGGGTT+AGG | + | chr6_1:56480873-56480892 | Msa0889340:intron | 40.0% |
| CATCTCACATTTCGTCACTT+CGG | + | chr6_1:56481189-56481208 | Msa0889340:intron | 40.0% | |
| ATGATGAGTGCAGAGTCAAT+AGG | - | chr6_1:56481293-56481312 | None:intergenic | 40.0% | |
| CATCTCACATTTCGTCACTT+CGG | + | chr6_1:56481189-56481208 | Msa0889340:intron | 40.0% | |
| CATCTCACATTTCGTCACTT+CGG | + | chr6_1:56481189-56481208 | Msa0889340:intron | 40.0% | |
| GCTGTTGCTATCTGTTATGA+AGG | - | chr6_1:56482315-56482334 | None:intergenic | 40.0% | |
| GCAAATTCACCCTTCACAAA+TGG | + | chr6_1:56482342-56482361 | Msa0889340:CDS | 40.0% | |
| TTGGGCTTTCCATTTGTGAA+GGG | - | chr6_1:56482354-56482373 | None:intergenic | 40.0% | |
| ATTGGGCTTTCCATTTGTGA+AGG | - | chr6_1:56482355-56482374 | None:intergenic | 40.0% | |
| TTCACAAATGGAAAGCCCAA+TGG | + | chr6_1:56482354-56482373 | Msa0889340:CDS | 40.0% | |
| TCACAAATGGAAAGCCCAAT+GGG | + | chr6_1:56482355-56482374 | Msa0889340:CDS | 40.0% | |
| CTCATACTGACAAACCCATT+GGG | - | chr6_1:56482372-56482391 | None:intergenic | 40.0% | |
| TCTCATACTGACAAACCCAT+TGG | - | chr6_1:56482373-56482392 | None:intergenic | 40.0% | |
| ATGGGTTTGTCAGTATGAGA+AGG | + | chr6_1:56482373-56482392 | Msa0889340:CDS | 40.0% | |
| GATCCTAATATTAGGCCTCA+TGG | + | chr6_1:56482568-56482587 | Msa0889340:intron | 40.0% | |
| AAGCCATGAGGCCTAATATT+AGG | - | chr6_1:56482574-56482593 | None:intergenic | 40.0% | |
| ! | AAGAAACACATCGACTGTAC+TGG | + | chr6_1:56482803-56482822 | Msa0889340:CDS | 40.0% |
| !! | GTTTTTGCTGTAGGACTTCT+TGG | + | chr6_1:56482958-56482977 | Msa0889340:intron | 40.0% |
| GGAAAACTACCTTGTATTCC+CGG | + | chr6_1:56482983-56483002 | Msa0889340:CDS | 40.0% | |
| TTTGGGCACTATATTTCCTG+AGG | + | chr6_1:56483039-56483058 | Msa0889340:CDS | 40.0% | |
| AACATTACTCTATCCAGGTC+AGG | + | chr6_1:56483153-56483172 | Msa0889340:intron | 40.0% | |
| AATATCTCTTTAGCCTGACC+TGG | - | chr6_1:56483169-56483188 | None:intergenic | 40.0% | |
| GGTCAGGCTAAAGAGATATT+TGG | + | chr6_1:56483169-56483188 | Msa0889340:intron | 40.0% | |
| ! | TATGTGCTTTACCGGCATTT+TGG | + | chr6_1:56483228-56483247 | Msa0889340:CDS | 40.0% |
| ! | ATGTGCTTTACCGGCATTTT+GGG | + | chr6_1:56483229-56483248 | Msa0889340:CDS | 40.0% |
| GTCACATAACCTATTCTGAG+AGG | + | chr6_1:56483307-56483326 | Msa0889340:intron | 40.0% | |
| GAAGGATCGGATATATGGAT+CGG | - | chr6_1:56483341-56483360 | None:intergenic | 40.0% | |
| CCTTATCCACTAAGAAGGAT+CGG | - | chr6_1:56483354-56483373 | None:intergenic | 40.0% | |
| ! | CTAAGCCTTATCCACTAAGA+AGG | - | chr6_1:56483359-56483378 | None:intergenic | 40.0% |
| CAGAAGAAAGACAAATGCTG+AGG | + | chr6_1:56483537-56483556 | Msa0889340:CDS | 40.0% | |
| GCTAGATAGAGTCCCAAAAA+CGG | + | chr6_1:56483625-56483644 | Msa0889340:intron | 40.0% | |
| CCCTTTGAACTCTTTGTAGA+AGG | + | chr6_1:56483778-56483797 | Msa0889340:intron | 40.0% | |
| !!! | TTTTGGTTTCCTAGCACTAG+AGG | - | chr6_1:56483811-56483830 | None:intergenic | 40.0% |
| ! | TGGTGTCTTTAGACCAGTTT+TGG | - | chr6_1:56484029-56484048 | None:intergenic | 40.0% |
| CTAAAGACACCATTTCGAGA+TGG | + | chr6_1:56484037-56484056 | Msa0889340:CDS | 40.0% | |
| !! | TGCTGAAGAGGTTCTAAAGT+TGG | + | chr6_1:56484075-56484094 | Msa0889340:CDS | 40.0% |
| !! | AGAGGTTCTAAAGTTGGCAA+AGG | + | chr6_1:56484081-56484100 | Msa0889340:CDS | 40.0% |
| !! | TTTGTTATTGCCAGCAAAGG+TGG | + | chr6_1:56484119-56484138 | Msa0889340:CDS | 40.0% |
| ATAGGTTTCCAGCCAAAGTC+TGG | + | chr6_1:56479732-56479751 | Msa0889340:CDS | 45.0% | |
| ! | GCTTAGGCTTTGATCTTCTG+TGG | - | chr6_1:56479969-56479988 | None:intergenic | 45.0% |
| ACGGTTATGACTGTTAGAGG+TGG | - | chr6_1:56480006-56480025 | None:intergenic | 45.0% | |
| GTGACGGTTATGACTGTTAG+AGG | - | chr6_1:56480009-56480028 | None:intergenic | 45.0% | |
| ! | TTCTGAGGAGTGAAACCCTA+TGG | + | chr6_1:56480748-56480767 | Msa0889340:intron | 45.0% |
| GGCCGCTAACATATACCATA+GGG | - | chr6_1:56480766-56480785 | None:intergenic | 45.0% | |
| TGGCCGCTAACATATACCAT+AGG | - | chr6_1:56480767-56480786 | None:intergenic | 45.0% | |
| ! | GACTAAATCCCACCGAGTTT+TGG | - | chr6_1:56480787-56480806 | None:intergenic | 45.0% |
| CAAAACCAGCTTGTATGGTG+AGG | - | chr6_1:56480861-56480880 | None:intergenic | 45.0% | |
| GAATGATGTGCAGAGTCAAG+AGG | + | chr6_1:56480951-56480970 | Msa0889340:intron | 45.0% | |
| TGCAGAGTCAAGAGGAATGA+TGG | + | chr6_1:56480959-56480978 | Msa0889340:intron | 45.0% | |
| GAATGATGTGCAGAGTCAAG+AGG | + | chr6_1:56480951-56480970 | Msa0889340:intron | 45.0% | |
| AGAGGAGTCAAGAGGAATGA+TGG | + | chr6_1:56481028-56481047 | Msa0889340:intron | 45.0% | |
| ATGGAATGATGTGCAGAGTC+AGG | + | chr6_1:56480948-56480967 | Msa0889340:intron | 45.0% | |
| ATGATGAGTGCAGAGTCAAG+AGG | - | chr6_1:56481110-56481129 | None:intergenic | 45.0% | |
| ATGATGAGTGCAGAGTCAAG+AGG | - | chr6_1:56481110-56481129 | None:intergenic | 45.0% | |
| GTCACTTCGGTCATCTCAAT+CGG | + | chr6_1:56481202-56481221 | Msa0889340:intron | 45.0% | |
| GTCACTTCGGTCATCTCAAT+CGG | + | chr6_1:56481202-56481221 | Msa0889340:intron | 45.0% | |
| ATGATGAGTGCAGAGTCAAG+AGG | - | chr6_1:56481110-56481129 | None:intergenic | 45.0% | |
| GTCACTTCGGTCATCTCAAT+CGG | + | chr6_1:56481202-56481221 | Msa0889340:intron | 45.0% | |
| AGGTGATCGTGTTAGCATCA+CGG | - | chr6_1:56481798-56481817 | None:intergenic | 45.0% | |
| !! | GTTCTGAAGCTGACATGATC+CGG | + | chr6_1:56482189-56482208 | Msa0889340:CDS | 45.0% |
| ACTGTACTGGAATGACCTTC+AGG | + | chr6_1:56482816-56482835 | Msa0889340:CDS | 45.0% | |
| CTGTACTGGAATGACCTTCA+GGG | + | chr6_1:56482817-56482836 | Msa0889340:CDS | 45.0% | |
| AAGATAGATGGGAACCCTGA+AGG | - | chr6_1:56482834-56482853 | None:intergenic | 45.0% | |
| ! | GCTCGGTACTGAATTAAGCA+AGG | - | chr6_1:56482919-56482938 | None:intergenic | 45.0% |
| ! | TTTGCTGTAGGACTTCTTGG+CGG | + | chr6_1:56482961-56482980 | Msa0889340:intron | 45.0% |
| GGTAATTCACCGGGAATACA+AGG | - | chr6_1:56482995-56483014 | None:intergenic | 45.0% | |
| !! | TTACCGGCATTTTGGGTAAG+TGG | + | chr6_1:56483236-56483255 | Msa0889340:intron | 45.0% |
| ! | CCGATCCTTCTTAGTGGATA+AGG | + | chr6_1:56483351-56483370 | Msa0889340:intron | 45.0% |
| ACTGACAACTGGATTCTCTC+TGG | + | chr6_1:56483996-56484015 | Msa0889340:intron | 45.0% | |
| ACTGAAGCATGTTGCTGAAG+AGG | + | chr6_1:56484063-56484082 | Msa0889340:CDS | 45.0% | |
| TATTGCCAGCAAAGGTGGTT+CGG | + | chr6_1:56484124-56484143 | Msa0889340:CDS | 45.0% | |
| !!! | TATTTTTTTTAATCTATATA+TGG | + | chr6_1:56481858-56481877 | Msa0889340:intron | 5.0% |
| !!! | GATATATTTTTTTTTTATTA+CGG | + | chr6_1:56482254-56482273 | Msa0889340:intron | 5.0% |
| CTTTGAGTCCAGACTTTGGC+TGG | - | chr6_1:56479743-56479762 | None:intergenic | 50.0% | |
| GGTGGGATTTAGTCCCACAT+CGG | + | chr6_1:56480793-56480812 | Msa0889340:intron | 50.0% | |
| TCATTCCATTTCAGCCAGCG+TGG | - | chr6_1:56480937-56480956 | None:intergenic | 50.0% | |
| CAGAGTCAAGAGGAGTCAAG+AGG | + | chr6_1:56480991-56481010 | Msa0889340:intron | 50.0% | |
| GAATGATGTGCAGAGTCAGG+AGG | + | chr6_1:56481050-56481069 | Msa0889340:intron | 50.0% | |
| ! | ATGCCCAAAGTTGGTTCTCG+TGG | + | chr6_1:56481994-56482013 | Msa0889340:CDS | 50.0% |
| ! | TGCCCAAAGTTGGTTCTCGT+GGG | + | chr6_1:56481995-56482014 | Msa0889340:CDS | 50.0% |
| AGCCCACGAGAACCAACTTT+GGG | - | chr6_1:56482000-56482019 | None:intergenic | 50.0% | |
| AAGCCCACGAGAACCAACTT+TGG | - | chr6_1:56482001-56482020 | None:intergenic | 50.0% | |
| CAAGGCTAGCACGAAACTTC+CGG | - | chr6_1:56482211-56482230 | None:intergenic | 50.0% | |
| ! | TTCTTACGGGCTGCAATGCA+AGG | - | chr6_1:56482229-56482248 | None:intergenic | 50.0% |
| TTGCTGTAGGACTTCTTGGC+GGG | + | chr6_1:56482962-56482981 | Msa0889340:intron | 50.0% | |
| !! | TTGGAGATGAGAGGTGCTGA+TGG | + | chr6_1:56483188-56483207 | Msa0889340:CDS | 50.0% |
| !! | AGATGAGAGGTGCTGATGGA+GGG | + | chr6_1:56483192-56483211 | Msa0889340:CDS | 50.0% |
| TAGCAATGCAGTGCGCACTT+AGG | - | chr6_1:56483751-56483770 | None:intergenic | 50.0% | |
| GGTCAACAACCTCTAGTGCT+AGG | + | chr6_1:56483799-56483818 | Msa0889340:intron | 50.0% | |
| ACAACTGGATTCTCTCTGGC+AGG | + | chr6_1:56484000-56484019 | Msa0889340:intron | 50.0% | |
| TGTTAGCGGCCAAAACTCGG+TGG | + | chr6_1:56480775-56480794 | Msa0889340:intron | 55.0% | |
| GTTAGCGGCCAAAACTCGGT+GGG | + | chr6_1:56480776-56480795 | Msa0889340:intron | 55.0% | |
| GCACTCCTCACCATACAAGC+TGG | + | chr6_1:56480853-56480872 | Msa0889340:intron | 55.0% | |
| CATCTTCTGCTGAACCACGC+TGG | + | chr6_1:56480920-56480939 | Msa0889340:intron | 55.0% | |
| ! | CTGAACCACGCTGGCTGAAA+TGG | + | chr6_1:56480929-56480948 | Msa0889340:intron | 55.0% |
| CAGAGTCAGGAGGAGTCAAG+AGG | + | chr6_1:56481060-56481079 | Msa0889340:intron | 55.0% | |
| GTCCAGGACATGCACTGTAC+AGG | + | chr6_1:56482029-56482048 | Msa0889340:CDS | 55.0% | |
| CACCTGTACAGTGCATGTCC+TGG | - | chr6_1:56482034-56482053 | None:intergenic | 55.0% | |
| ! | GATGTTGATGAGGACCGCAC+AGG | + | chr6_1:56482493-56482512 | Msa0889340:CDS | 55.0% |
| CAAAAGGCAGCATGCCTGTG+CGG | - | chr6_1:56482510-56482529 | None:intergenic | 55.0% | |
| AAGGGTTGTGTCGTCTGCTG+CGG | + | chr6_1:56482639-56482658 | Msa0889340:intron | 55.0% | |
| !! | GAGATGAGAGGTGCTGATGG+AGG | + | chr6_1:56483191-56483210 | Msa0889340:CDS | 55.0% |
| CCGCCACTTACCCAAAATGC+CGG | - | chr6_1:56483242-56483261 | None:intergenic | 55.0% | |
| !! | CCGGCATTTTGGGTAAGTGG+CGG | + | chr6_1:56483239-56483258 | Msa0889340:intron | 55.0% |
| CTCTGGCAGGCTACCAAAAC+TGG | + | chr6_1:56484013-56484032 | Msa0889340:intron | 55.0% | |
| ! | GAGTGGTGGGAGAGTCAGAG+TGG | - | chr6_1:56481747-56481766 | None:intergenic | 60.0% |
| GTGGGCTTGACGTGATGTCC+AGG | + | chr6_1:56482013-56482032 | Msa0889340:CDS | 60.0% | |
| CCACACCGAACCACCTTTGC+TGG | - | chr6_1:56484132-56484151 | None:intergenic | 60.0% | |
| !! | CCAGCAAAGGTGGTTCGGTG+TGG | + | chr6_1:56484129-56484148 | Msa0889340:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 56479690 | 56484162 | 56479690 | ID=Msa0889340;Name=Msa0889340 |
| chr6_1 | mRNA | 56479690 | 56484162 | 56479690 | ID=Msa0889340-mRNA-1;Parent=Msa0889340;Name=Msa0889340-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0.88|0.8|1|1|1|10|0|294 |
| chr6_1 | exon | 56479690 | 56479782 | 56479690 | ID=Msa0889340-mRNA-1:exon:11124;Parent=Msa0889340-mRNA-1 |
| chr6_1 | exon | 56481967 | 56482050 | 56481967 | ID=Msa0889340-mRNA-1:exon:11125;Parent=Msa0889340-mRNA-1 |
| chr6_1 | exon | 56482173 | 56482241 | 56482173 | ID=Msa0889340-mRNA-1:exon:11126;Parent=Msa0889340-mRNA-1 |
| chr6_1 | exon | 56482324 | 56482394 | 56482324 | ID=Msa0889340-mRNA-1:exon:11127;Parent=Msa0889340-mRNA-1 |
| chr6_1 | exon | 56482480 | 56482548 | 56482480 | ID=Msa0889340-mRNA-1:exon:11128;Parent=Msa0889340-mRNA-1 |
| chr6_1 | exon | 56482745 | 56482838 | 56482745 | ID=Msa0889340-mRNA-1:exon:11129;Parent=Msa0889340-mRNA-1 |
| chr6_1 | exon | 56482971 | 56483060 | 56482971 | ID=Msa0889340-mRNA-1:exon:11130;Parent=Msa0889340-mRNA-1 |
| chr6_1 | exon | 56483170 | 56483250 | 56483170 | ID=Msa0889340-mRNA-1:exon:11131;Parent=Msa0889340-mRNA-1 |
| chr6_1 | exon | 56483473 | 56483565 | 56483473 | ID=Msa0889340-mRNA-1:exon:11132;Parent=Msa0889340-mRNA-1 |
| chr6_1 | exon | 56484022 | 56484162 | 56484022 | ID=Msa0889340-mRNA-1:exon:11133;Parent=Msa0889340-mRNA-1 |
| chr6_1 | CDS | 56479690 | 56479782 | 56479690 | ID=Msa0889340-mRNA-1:cds;Parent=Msa0889340-mRNA-1 |
| chr6_1 | CDS | 56481967 | 56482050 | 56481967 | ID=Msa0889340-mRNA-1:cds;Parent=Msa0889340-mRNA-1 |
| chr6_1 | CDS | 56482173 | 56482241 | 56482173 | ID=Msa0889340-mRNA-1:cds;Parent=Msa0889340-mRNA-1 |
| chr6_1 | CDS | 56482324 | 56482394 | 56482324 | ID=Msa0889340-mRNA-1:cds;Parent=Msa0889340-mRNA-1 |
| chr6_1 | CDS | 56482480 | 56482548 | 56482480 | ID=Msa0889340-mRNA-1:cds;Parent=Msa0889340-mRNA-1 |
| chr6_1 | CDS | 56482745 | 56482838 | 56482745 | ID=Msa0889340-mRNA-1:cds;Parent=Msa0889340-mRNA-1 |
| chr6_1 | CDS | 56482971 | 56483060 | 56482971 | ID=Msa0889340-mRNA-1:cds;Parent=Msa0889340-mRNA-1 |
| chr6_1 | CDS | 56483170 | 56483250 | 56483170 | ID=Msa0889340-mRNA-1:cds;Parent=Msa0889340-mRNA-1 |
| chr6_1 | CDS | 56483473 | 56483565 | 56483473 | ID=Msa0889340-mRNA-1:cds;Parent=Msa0889340-mRNA-1 |
| chr6_1 | CDS | 56484022 | 56484162 | 56484022 | ID=Msa0889340-mRNA-1:cds;Parent=Msa0889340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
