AlfalfaGEDB | Msa0948280

M. sativa cultivar zhongmu-4 / Msa0948280

KEGG: K01919
GO: GO:0000003 GO:0000302 GO:0001101 GO:0002213 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004357 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006518 GO:0006575 GO:0006725 GO:0006749 GO:0006750 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009403 GO:0009404 GO:0009408 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009700 GO:0009719 GO:0009725 GO:0009753 GO:0009791 GO:0009814 GO:0009816 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010193 GO:0016043 GO:0016143 GO:0016144 GO:0016874 GO:0016879 GO:0016881 GO:0018130 GO:0019184 GO:0019438 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0022414 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042398 GO:0042430 GO:0042435 GO:0042493 GO:0042545 GO:0042742 GO:0043043 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0045087 GO:0045229 GO:0046217 GO:0046483 GO:0046677 GO:0046686 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052314 GO:0052315 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0061458 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0090567 GO:0098542 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700
PFAM: PF04107.16

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0948280	XP_004503722.1	78.639	529	88	3	1	529	1	504	0.0	845

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0948280	sp\|Q9ZNX6\|GSH1_MEDTR	77.358	530	94	3	2	529	3	508	0.0	833

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0304570	Msa0948280	0.808264	3.373574e-50	-8.615850e-47
Msa0304680	Msa0948280	0.807636	4.588660e-50	-8.615850e-47
Msa0883040	Msa0948280	0.837707	4.435028e-57	-8.615850e-47
Msa0889340	Msa0948280	0.858178	9.845352e-63	-8.615850e-47
Msa0910410	Msa0948280	0.817308	3.527286e-52	-8.615850e-47
Msa0910420	Msa0948280	0.927702	8.127667e-92	-8.615850e-47
Msa0948270	Msa0948280	0.800763	1.237316e-48	-8.615850e-47
Msa0948280	Msa0984680	0.907932	2.967285e-81	-8.615850e-47
Msa0948280	Msa1314190	0.802945	4.409618e-49	-8.615850e-47

Showing 1 to 9 of 9 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0948280	MtrunA17_Chr8g0386791	77.358	530	94	3	2	529	3	508	0.0	833
Msa0948280	MtrunA17_Chr5g0397471	63.992	486	153	1	44	529	49	512	0.0	650
Msa0948280	MtrunA17_Chr5g0397441	56.684	187	59	1	343	529	1	165	7.72e-65	208
Msa0948280	MtrunA17_Chr5g0397431	60.163	123	49	0	188	310	1	123	1.12e-46	159
Msa0948280	MtrunA17_Chr5g0397421	75.000	88	22	0	94	181	10	97	6.74e-43	148

Showing 1 to 5 of 5 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0948280	AT4G23100.3	77.215	474	86	1	56	529	71	522	762
Msa0948280	AT4G23100.1	77.215	474	86	1	56	529	71	522	762
Msa0948280	AT4G23100.2	82.294	401	71	0	56	456	71	471	696

Showing 1 to 3 of 3 entries

Previous1Next

Find 120 sgRNAs with CRISPR-Local

Find 478 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTACCTTTGGTATCAT+AGG	0.367052	6_3:-32253017	None:intergenic
AAAGAATCATCGAAAACAAA+AGG	0.495048	6_3:-32254824	None:intergenic
AAAGCACATAAACTTATCAT+TGG	0.495697	6_3:-32255517	None:intergenic
AAAGCTGTTGCTGAGAAAAT+GGG	0.478931	6_3:+32252942	Msa0948280:CDS
AACAAATACATGCCCAAAGT+TGG	0.479007	6_3:+32254284	Msa0948280:CDS
AACATATCATTGGAGCCAGG+TGG	0.701443	6_3:+32252411	Msa0948280:CDS
AAGAAACACATCGACTGTAC+TGG	0.468991	6_3:+32255105	Msa0948280:CDS
AAGACAAATGCTGAGGAATA+AGG	0.371420	6_3:+32255877	Msa0948280:CDS
AAGAGATATTTGGAGATGAG+AGG	0.618382	6_3:+32255481	Msa0948280:CDS
AAGATAGATGGGAACCCTGA+AGG	0.577010	6_3:-32255133	None:intergenic

Showing 1 to 10 of 120 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GTAAAACTAAGGATAAATGG+AGG	+	chr6_3:32250634-32250653	Msa0948280:CDS	30.0%
ATCTGTTTCGAAAACTTTGT+GGG	-	chr6_3:32250706-32250725	None:intergenic	30.0%
AATCTGTTTCGAAAACTTTG+TGG	-	chr6_3:32250707-32250726	None:intergenic	30.0%
ACTATCAATTCCTTATGTCA+TGG	-	chr6_3:32250919-32250938	None:intergenic	30.0%
ATATCTGGTCCATACTATTT+GGG	-	chr6_3:32251102-32251121	None:intergenic	30.0%
AATATCTGGTCCATACTATT+TGG	-	chr6_3:32251103-32251122	None:intergenic	30.0%
GAGGGTAAAATAATGACTAA+TGG	-	chr6_3:32251288-32251307	None:intergenic	30.0%
CATTTCATTTCGATGTGATT+CGG	-	chr6_3:32251434-32251453	None:intergenic	30.0%
AAGATCCATCTTGTTGATAT+AGG	-	chr6_3:32251523-32251542	None:intergenic	30.0%
CATTTGTCTATGACTAAATG+AGG	+	chr6_3:32252060-32252079	Msa0948280:intron	30.0%

Showing 1 to 10 of 478 entries

Previous1 2 3 4 5…48Next

Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	32250375	32257570	32250375	ID=Msa0948280;Name=Msa0948280
chr6_3	mRNA	32250375	32257570	32250375	ID=Msa0948280-mRNA-1;Parent=Msa0948280;Name=Msa0948280-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0\|0.85\|0.73\|1\|1\|1\|15\|51\|529
chr6_3	exon	32250375	32250655	32250375	ID=Msa0948280-mRNA-1:exon:8394;Parent=Msa0948280-mRNA-1
chr6_3	exon	32252108	32252258	32252108	ID=Msa0948280-mRNA-1:exon:8395;Parent=Msa0948280-mRNA-1
chr6_3	exon	32252402	32252509	32252402	ID=Msa0948280-mRNA-1:exon:8396;Parent=Msa0948280-mRNA-1
chr6_3	exon	32252939	32253031	32252939	ID=Msa0948280-mRNA-1:exon:8397;Parent=Msa0948280-mRNA-1
chr6_3	exon	32254266	32254349	32254266	ID=Msa0948280-mRNA-1:exon:8398;Parent=Msa0948280-mRNA-1
chr6_3	exon	32254472	32254540	32254472	ID=Msa0948280-mRNA-1:exon:8399;Parent=Msa0948280-mRNA-1
chr6_3	exon	32254625	32254695	32254625	ID=Msa0948280-mRNA-1:exon:8400;Parent=Msa0948280-mRNA-1
chr6_3	exon	32254781	32254849	32254781	ID=Msa0948280-mRNA-1:exon:8401;Parent=Msa0948280-mRNA-1
chr6_3	exon	32255047	32255140	32255047	ID=Msa0948280-mRNA-1:exon:8402;Parent=Msa0948280-mRNA-1
chr6_3	exon	32255273	32255362	32255273	ID=Msa0948280-mRNA-1:exon:8403;Parent=Msa0948280-mRNA-1
chr6_3	exon	32255472	32255552	32255472	ID=Msa0948280-mRNA-1:exon:8404;Parent=Msa0948280-mRNA-1
chr6_3	exon	32255806	32255898	32255806	ID=Msa0948280-mRNA-1:exon:8405;Parent=Msa0948280-mRNA-1
chr6_3	exon	32256326	32256441	32256326	ID=Msa0948280-mRNA-1:exon:8406;Parent=Msa0948280-mRNA-1
chr6_3	exon	32256944	32257044	32256944	ID=Msa0948280-mRNA-1:exon:8407;Parent=Msa0948280-mRNA-1
chr6_3	exon	32257431	32257570	32257431	ID=Msa0948280-mRNA-1:exon:8408;Parent=Msa0948280-mRNA-1
chr6_3	CDS	32250375	32250655	32250375	ID=Msa0948280-mRNA-1:cds;Parent=Msa0948280-mRNA-1
chr6_3	CDS	32252108	32252258	32252108	ID=Msa0948280-mRNA-1:cds;Parent=Msa0948280-mRNA-1
chr6_3	CDS	32252402	32252509	32252402	ID=Msa0948280-mRNA-1:cds;Parent=Msa0948280-mRNA-1
chr6_3	CDS	32252939	32253031	32252939	ID=Msa0948280-mRNA-1:cds;Parent=Msa0948280-mRNA-1
chr6_3	CDS	32254266	32254349	32254266	ID=Msa0948280-mRNA-1:cds;Parent=Msa0948280-mRNA-1
chr6_3	CDS	32254472	32254540	32254472	ID=Msa0948280-mRNA-1:cds;Parent=Msa0948280-mRNA-1
chr6_3	CDS	32254625	32254695	32254625	ID=Msa0948280-mRNA-1:cds;Parent=Msa0948280-mRNA-1
chr6_3	CDS	32254781	32254849	32254781	ID=Msa0948280-mRNA-1:cds;Parent=Msa0948280-mRNA-1
chr6_3	CDS	32255047	32255140	32255047	ID=Msa0948280-mRNA-1:cds;Parent=Msa0948280-mRNA-1
chr6_3	CDS	32255273	32255362	32255273	ID=Msa0948280-mRNA-1:cds;Parent=Msa0948280-mRNA-1
chr6_3	CDS	32255472	32255552	32255472	ID=Msa0948280-mRNA-1:cds;Parent=Msa0948280-mRNA-1
chr6_3	CDS	32255806	32255898	32255806	ID=Msa0948280-mRNA-1:cds;Parent=Msa0948280-mRNA-1
chr6_3	CDS	32256326	32256441	32256326	ID=Msa0948280-mRNA-1:cds;Parent=Msa0948280-mRNA-1
chr6_3	CDS	32256944	32257044	32256944	ID=Msa0948280-mRNA-1:cds;Parent=Msa0948280-mRNA-1
chr6_3	CDS	32257431	32257519	32257431	ID=Msa0948280-mRNA-1:cds;Parent=Msa0948280-mRNA-1
chr6_3	three_prime_UTR	32257520	32257570	32257520	ID=Msa0948280-mRNA-1:three_prime_utr;Parent=Msa0948280-mRNA-1

Gene Sequence

>Msa0948280

ATGACTATCATCTCTCAAGTCACTTCCCCCTCTTGCTCTATGCACCACAACACAATATCACATAATAGATTCCTTCTGCAGCAGAAAACCTCCATTTCAAACACCCTCTCTTTATCTTCAACCAACTCAAACAAAAGAATTGTTAGTTTCAATGACCGTAGGGTAGTCATTGTTGCCGCTAGTCCTCCAACTGAAGCTGTTGTTGTTGCTACTCATCCACTTACAAAACAGGATCTCATCGATTATTTTGTCTCTGGTTGTAAAACTAAGGATAAATGGAGAATAGGTACTGAACATGAAAAGTTTGGTTTTGAGTTTAAAAACTTGCAACCTATTAAGTATGAGCAAATAGCAGAATTGCTAAATGGCATTGCTGAGAGATTTTTCTGGGATAAAGTAATGGAAGGTGATAAAATTATCGGACTCAAACAAGGCAAGCAAAACATATCATTGGAGCCAGGTGGTCAGTTAGAACTTAGTGGAGCCCCTGTTGAAACCCTGCATCAGACTTATGAAGAAATTGATTTGCACCTCTATCAAGTTAAAGCTGTTGCTGAGAAAATGGGAATTGGATTTTTGGGGATAGGTTTCCAGCCAAAGTCTGGACTCAAAGACATGCCTATGATACCAAAGGAAAGAAATGACATTATGAACAAATACATGCCCAAAGTTGGTTCTCGTGGGCTTGACGTGATGTCCAGGACATGCACTGTACAGGTCAATCTGGACTATAGTTCTGAAGCTGACATGATCCGGAAGTTTCGTGCTAGCCTTGCATTGCAGCCCATAGCAACAGCTCTTTTTGCAAATTCACCCTTCACAAATGGAAAGCCCAATGGGTTTGTCAGTATGAGAAGTTATATTTGGACTGATGTTGATAAGGACCGCACAGGCATGCTGCCTTTTGTTTTCGATGATTCTTTCGGGTTTGAGAAGTATGTTGATTATGCTCTTGATGTTCCAATGTGTTTTGTCTATCGGAAAAAGAAACACATCGACTGTACTGGAATGACCTTCAGGGACTTCTTGGCGGGAAAGCTACCTTGTATTCCGGGTGAATTACCATCTCTTAATGATTGGGAGAATCATTTGGGCACTATATTTCCTGAGGTCAGGCTAAAGAGATATTTGGAGATGAGAGGTGCTGACGGAGGGCCAATGATAAGTTTATGTGCTTTACCGGCATTTTGGGTAGGGTTATTATATGATGAGATTTCTTTGCAAAGTGTATTAGATTTGACAGCAGATTGGACTACAGAAGAAAGACAAATGCTGAGGAATAAGGCTACCAAAACTGGTCTAAAGACACCATTTCGAGATGGTTTACTGAAGCATGTTGCTGAAGAGGTTCTAAAGTTGGCAAAGGTGAGTTGTAATCGTTTTTGTTATTGCCAGCAGAGGACTCTAATCTTCCATCAACAATATCTACTGGATGGCTTGGAAAGAAGAGGCTTTAACGAATCCAGATTTTTGAATGTAGTAGCTGAGGTGGCAAGAACAGGTGTCACTCCAGCTGAGCGGCTTTTGGAATTGTATCATGGAAAGTGGAAGCAATCTATTGATCATGTATATGAGGAATTGCTTTATTAA

Protein sequence

>Msa0948280

MTIISQVTSPSCSMHHNTISHNRFLLQQKTSISNTLSLSSTNSNKRIVSFNDRRVVIVAASPPTEAVVVATHPLTKQDLIDYFVSGCKTKDKWRIGTEHEKFGFEFKNLQPIKYEQIAELLNGIAERFFWDKVMEGDKIIGLKQGKQNISLEPGGQLELSGAPVETLHQTYEEIDLHLYQVKAVAEKMGIGFLGIGFQPKSGLKDMPMIPKERNDIMNKYMPKVGSRGLDVMSRTCTVQVNLDYSSEADMIRKFRASLALQPIATALFANSPFTNGKPNGFVSMRSYIWTDVDKDRTGMLPFVFDDSFGFEKYVDYALDVPMCFVYRKKKHIDCTGMTFRDFLAGKLPCIPGELPSLNDWENHLGTIFPEVRLKRYLEMRGADGGPMISLCALPAFWVGLLYDEISLQSVLDLTADWTTEERQMLRNKATKTGLKTPFRDGLLKHVAEEVLKLAKVSCNRFCYCQQRTLIFHQQYLLDGLERRGFNESRFLNVVAEVARTGVTPAERLLELYHGKWKQSIDHVYEELLY*