Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0892370 | XP_024630580.1 | 79.581 | 191 | 8 | 1 | 1 | 160 | 2 | 192 | 2.64e-101 | 299 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0892370 | sp|Q9FLI1|BH036_ARATH | 46.364 | 110 | 53 | 2 | 5 | 109 | 2 | 110 | 5.79e-25 | 97.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0892370 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0892370 | Msa0892380 | 0.959764 | 8.399083e-118 | -8.615850e-47 |
| Msa0892370 | Msa0957630 | 0.986806 | 4.936374e-168 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0892370 | MtrunA17_Chr6g0474681 | 79.581 | 191 | 8 | 1 | 1 | 160 | 2 | 192 | 2.43e-105 | 299 |
| Msa0892370 | MtrunA17_Chr1g0204351 | 38.150 | 173 | 78 | 6 | 1 | 144 | 71 | 243 | 1.59e-25 | 97.8 |
| Msa0892370 | MtrunA17_Chr6g0474671 | 49.515 | 103 | 49 | 2 | 5 | 104 | 71 | 173 | 2.63e-25 | 97.1 |
| Msa0892370 | MtrunA17_Chr1g0204361 | 43.750 | 112 | 55 | 4 | 3 | 109 | 17 | 125 | 1.29e-22 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0892370 | AT5G51780.1 | 46.364 | 110 | 53 | 2 | 5 | 109 | 2 | 110 | 5.88e-26 | 97.4 |
| Msa0892370 | AT5G51780.2 | 46.364 | 110 | 53 | 2 | 5 | 109 | 25 | 133 | 1.65e-25 | 97.1 |
| Msa0892370 | AT4G25410.1 | 40.678 | 118 | 65 | 3 | 9 | 121 | 47 | 164 | 3.89e-23 | 91.3 |
| Msa0892370 | AT4G25400.2 | 45.455 | 110 | 55 | 3 | 2 | 109 | 21 | 127 | 1.08e-22 | 89.4 |
| Msa0892370 | AT4G25400.1 | 44.037 | 109 | 58 | 2 | 2 | 109 | 21 | 127 | 1.12e-22 | 89.4 |
| Msa0892370 | AT5G51790.4 | 43.548 | 124 | 65 | 4 | 2 | 121 | 24 | 146 | 1.48e-21 | 86.7 |
| Msa0892370 | AT5G51790.1 | 43.548 | 124 | 65 | 4 | 2 | 121 | 24 | 146 | 2.11e-21 | 86.3 |
| Msa0892370 | AT5G51790.2 | 43.548 | 124 | 65 | 4 | 2 | 121 | 89 | 211 | 6.46e-21 | 86.3 |
| Msa0892370 | AT5G51790.3 | 43.548 | 124 | 65 | 4 | 2 | 121 | 89 | 211 | 6.89e-21 | 86.3 |
| Msa0892370 | AT1G12540.1 | 43.651 | 126 | 57 | 3 | 3 | 116 | 73 | 196 | 7.23e-21 | 86.3 |
| Msa0892370 | AT1G62975.2 | 49.398 | 83 | 40 | 1 | 3 | 85 | 72 | 152 | 3.01e-20 | 84.3 |
| Msa0892370 | AT1G62975.1 | 49.398 | 83 | 40 | 1 | 3 | 85 | 72 | 152 | 4.75e-20 | 84.0 |
Find 49 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGGAAATTGAAGTATATT+TGG | 0.176459 | 6_1:+72075623 | None:intergenic |
| CTCAAGATATTGTCGATTTC+AGG | 0.181886 | 6_1:+72071585 | None:intergenic |
| GTTTCACCACTTGTGGGATT+TGG | 0.215430 | 6_1:-72071308 | Msa0892370:three_prime_UTR |
| TTGAAGTATATTTGGTTGTT+AGG | 0.250422 | 6_1:+72075631 | None:intergenic |
| TTTCACCACTTGTGGGATTT+GGG | 0.284053 | 6_1:-72071307 | None:intergenic |
| ATTTGGGAGACAAAGATTAT+AGG | 0.305099 | 6_1:-72075389 | Msa0892370:five_prime_UTR |
| TCTTCCTATAGAATATATTA+AGG | 0.316735 | 6_1:-72075266 | Msa0892370:intron |
| TTACATTTGCCAGATATGTT+TGG | 0.363977 | 6_1:+72075667 | None:intergenic |
| TAATCAATTCCAGTCATTAT+CGG | 0.381800 | 6_1:+72071776 | None:intergenic |
| TCTGAGAATCCAAACATATC+TGG | 0.381962 | 6_1:-72075676 | Msa0892370:five_prime_UTR |
| TGAAGTATATTTGGTTGTTA+GGG | 0.384471 | 6_1:+72075632 | None:intergenic |
| ATTATAGGATATTGTTATCA+TGG | 0.391937 | 6_1:-72075374 | Msa0892370:exon |
| ATGTCTAACACTCTTGATAA+AGG | 0.395077 | 6_1:+72074022 | None:intergenic |
| TTTCCAAGGTTGTATTTCAA+TGG | 0.407577 | 6_1:+72075480 | None:intergenic |
| CTATAGGAAGAAGCGATCTA+AGG | 0.415824 | 6_1:+72075278 | None:intergenic |
| TCATGGAAGAAAACAAGAAA+TGG | 0.438064 | 6_1:-72075357 | Msa0892370:CDS |
| ATCTCAAGTCCTCCAGGAAA+AGG | 0.460588 | 6_1:+72074079 | None:intergenic |
| AATGAGGTTTCACCACTTGT+GGG | 0.464388 | 6_1:-72071314 | Msa0892370:three_prime_UTR |
| ACTTGAGCATGATATTGCTT+CGG | 0.469019 | 6_1:+72071730 | None:intergenic |
| AGAGCGTATACTATCTTTGT+GGG | 0.473483 | 6_1:+72075581 | None:intergenic |
| CTAACCTTAATATATTCTAT+AGG | 0.474465 | 6_1:+72075262 | None:intergenic |
| GAATGAGGTTTCACCACTTG+TGG | 0.479464 | 6_1:-72071315 | Msa0892370:three_prime_UTR |
| GAAGCAATTACAAGATAAGA+AGG | 0.481546 | 6_1:-72074194 | Msa0892370:CDS |
| GAGAGCGTATACTATCTTTG+TGG | 0.506519 | 6_1:+72075580 | None:intergenic |
| TAAGAAGGAAGAGTTAATGA+AGG | 0.514489 | 6_1:-72074179 | Msa0892370:CDS |
| TGATGATCTTCTAATTTCCA+AGG | 0.516391 | 6_1:+72075466 | None:intergenic |
| TTGAAGATTCAAATTCATAG+TGG | 0.521469 | 6_1:-72071514 | Msa0892370:three_prime_UTR |
| CACACAATCTCAAGTCCTCC+AGG | 0.527587 | 6_1:+72074073 | None:intergenic |
| AATTTCTGATCATGTGAATG+AGG | 0.530841 | 6_1:-72074251 | Msa0892370:CDS |
| CATGATACTTGTGAGTCAAA+TGG | 0.531228 | 6_1:-72075436 | Msa0892370:five_prime_UTR |
| TTGAAGGAACCGATAATGAC+TGG | 0.537483 | 6_1:-72071785 | Msa0892370:intron |
| TCTAAGGTTGGTGCAGAGGT+TGG | 0.539114 | 6_1:+72075294 | None:intergenic |
| TGCATGTGTGGACTTGAATG+AGG | 0.542338 | 6_1:-72071330 | Msa0892370:three_prime_UTR |
| TTTGTTGTAGTTAGAAACAA+TGG | 0.544147 | 6_1:-72071454 | Msa0892370:three_prime_UTR |
| AAAGGTTGAACAATAACAAA+GGG | 0.545126 | 6_1:+72074097 | None:intergenic |
| GCGATCTAAGGTTGGTGCAG+AGG | 0.557780 | 6_1:+72075290 | None:intergenic |
| AAGAGACAGAAAGACAAAGA+AGG | 0.564940 | 6_1:-72075327 | Msa0892370:CDS |
| TGATCTTATCTTATATGTGA+AGG | 0.566527 | 6_1:-72075701 | Msa0892370:five_prime_UTR |
| CTTGTGAGTCAAATGGTGAA+GGG | 0.569536 | 6_1:-72075429 | Msa0892370:five_prime_UTR |
| CCAAGGTTGTATTTCAATGG+TGG | 0.574419 | 6_1:+72075483 | None:intergenic |
| CCACCATTGAAATACAACCT+TGG | 0.577393 | 6_1:-72075483 | Msa0892370:five_prime_UTR |
| ACAAATGCCACTACTCAAGA+TGG | 0.579156 | 6_1:-72074142 | Msa0892370:CDS |
| AGGAAGAAGCGATCTAAGGT+TGG | 0.595316 | 6_1:+72075282 | None:intergenic |
| AAAAGGTTGAACAATAACAA+AGG | 0.600268 | 6_1:+72074096 | None:intergenic |
| ACTTGTGAGTCAAATGGTGA+AGG | 0.611143 | 6_1:-72075430 | Msa0892370:five_prime_UTR |
| CTGAACCCAAATCCCACAAG+TGG | 0.621804 | 6_1:+72071302 | None:intergenic |
| ACTAGAGCCATCTTGAGTAG+TGG | 0.645479 | 6_1:+72074135 | None:intergenic |
| TTGACAAAGATACTATACAA+AGG | 0.681733 | 6_1:+72075605 | None:intergenic |
| GAGCGTATACTATCTTTGTG+GGG | 0.690864 | 6_1:+72075582 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGTAGAATTTTTATTATT+TGG | - | chr6_1:72071602-72071621 | Msa0892370:CDS | 10.0% |
| !!! | AAGTAGAATTTTTATTATTT+GGG | - | chr6_1:72071603-72071622 | Msa0892370:CDS | 10.0% |
| !!! | TGGAAATATTTAATTTTTTA+TGG | - | chr6_1:72073404-72073423 | Msa0892370:intron | 10.0% |
| !! | AAAATTAATAATCTCAAAAT+AGG | - | chr6_1:72074163-72074182 | Msa0892370:CDS | 10.0% |
| !! | AAAATTAAAAATACAAAAGA+AGG | + | chr6_1:72074684-72074703 | None:intergenic | 10.0% |
| !!! | TAATATATTATCTTTTTTGT+TGG | - | chr6_1:72074745-72074764 | Msa0892370:intron | 10.0% |
| !! | CTATGTAATAAAAAAAAAAA+AGG | + | chr6_1:72074837-72074856 | None:intergenic | 10.0% |
| !! | ACAAGAAAATAAATAATCTT+GGG | + | chr6_1:72072631-72072650 | None:intergenic | 15.0% |
| !! | AACAAGAAAATAAATAATCT+TGG | + | chr6_1:72072632-72072651 | None:intergenic | 15.0% |
| !!! | TTTATTTGAAATTTGAAATC+TGG | - | chr6_1:72072664-72072683 | Msa0892370:intron | 15.0% |
| !! | TAGAAAAAAAAAATAATGCA+TGG | + | chr6_1:72073123-72073142 | None:intergenic | 15.0% |
| !! | TATAATAGTTGCAATATTTA+AGG | - | chr6_1:72073294-72073313 | Msa0892370:intron | 15.0% |
| !! | TATGGAAATATTTCTTATTA+TGG | - | chr6_1:72073422-72073441 | Msa0892370:intron | 15.0% |
| !! | ATCTATAAAACTAAACAATT+AGG | + | chr6_1:72074425-72074444 | None:intergenic | 15.0% |
| !!! | GTATTTTTAATTTTTTGTGT+CGG | - | chr6_1:72074690-72074709 | Msa0892370:intron | 15.0% |
| !!! | ACTTATTTTTGCTATATATA+AGG | + | chr6_1:72074974-72074993 | None:intergenic | 15.0% |
| !! | TGTTAATTGGTTAATTTATT+AGG | + | chr6_1:72075132-72075151 | None:intergenic | 15.0% |
| !! | TAATCAAATTTACAACATAT+GGG | + | chr6_1:72075183-72075202 | None:intergenic | 15.0% |
| !! | AAAGGAAATTGAAGTATATT+TGG | + | chr6_1:72071388-72071407 | None:intergenic | 20.0% |
| !!! | TTTTAATTATTTGGCTATAG+AGG | + | chr6_1:72071460-72071479 | None:intergenic | 20.0% |
| !!! | GAACTCAACTTTTAATTATT+TGG | + | chr6_1:72071469-72071488 | None:intergenic | 20.0% |
| !! | ATTATAGGATATTGTTATCA+TGG | - | chr6_1:72071634-72071653 | Msa0892370:intron | 20.0% |
| !! | TCTTCCTATAGAATATATTA+AGG | - | chr6_1:72071742-72071761 | Msa0892370:CDS | 20.0% |
| !! | CTAACCTTAATATATTCTAT+AGG | + | chr6_1:72071749-72071768 | None:intergenic | 20.0% |
| !! | ATATGAATCTCATTTAAATG+TGG | + | chr6_1:72071957-72071976 | None:intergenic | 20.0% |
| !!! | TACGTTTATACTCTTTTATT+AGG | + | chr6_1:72072053-72072072 | None:intergenic | 20.0% |
| !!! | AACAACAAGGTTTTATAAAT+CGG | + | chr6_1:72072164-72072183 | None:intergenic | 20.0% |
| !!! | GTAACATAATGTTTTCTTAT+AGG | + | chr6_1:72072356-72072375 | None:intergenic | 20.0% |
| !! | AAGAAAATAAATAATCTTGG+GGG | + | chr6_1:72072629-72072648 | None:intergenic | 20.0% |
| !! | CAAGAAAATAAATAATCTTG+GGG | + | chr6_1:72072630-72072649 | None:intergenic | 20.0% |
| !!! | GCATTATTTTTTTTTTCTAG+TGG | - | chr6_1:72073124-72073143 | Msa0892370:intron | 20.0% |
| !!! | CATAAATAGTTGTTACTTAA+AGG | + | chr6_1:72073356-72073375 | None:intergenic | 20.0% |
| !! | ATTTCTCTTATAAATAGGAT+CGG | + | chr6_1:72073680-72073699 | None:intergenic | 20.0% |
| !! | TCCTATTTATAAGAGAAATT+TGG | - | chr6_1:72073681-72073700 | Msa0892370:intron | 20.0% |
| !! | CCTATTTATAAGAGAAATTT+GGG | - | chr6_1:72073682-72073701 | Msa0892370:intron | 20.0% |
| !! | TAGAAGTTTACATTATTACA+AGG | + | chr6_1:72073811-72073830 | None:intergenic | 20.0% |
| !! | GTAATAATGTAAACTTCTAA+TGG | - | chr6_1:72073812-72073831 | Msa0892370:intron | 20.0% |
| !!! | GAAAATTAACCAATTTGTTA+AGG | - | chr6_1:72073921-72073940 | Msa0892370:intron | 20.0% |
| !!! | CATCTATAAGGATTTTTTTA+TGG | + | chr6_1:72074225-72074244 | None:intergenic | 20.0% |
| !! | TAAAAAAATCCTTATAGATG+AGG | - | chr6_1:72074225-72074244 | Msa0892370:CDS | 20.0% |
| !! | TATCAAATGATGAATTGTTT+AGG | + | chr6_1:72074382-72074401 | None:intergenic | 20.0% |
| !!! | ATTGTTTAGTTTTATAGATG+AGG | - | chr6_1:72074426-72074445 | Msa0892370:intron | 20.0% |
| !! | TAAAAGTTATTCCTTAGAAA+TGG | - | chr6_1:72074463-72074482 | Msa0892370:intron | 20.0% |
| !! | AGGAAGTGAATAAAATATTA+TGG | + | chr6_1:72074664-72074683 | None:intergenic | 20.0% |
| !!! | TTTTTTATTACATAGTCTAG+TGG | - | chr6_1:72074842-72074861 | Msa0892370:intron | 20.0% |
| !!! | CTCATTTTTGCTTATAATTA+AGG | - | chr6_1:72075052-72075071 | Msa0892370:intron | 20.0% |
| !! | ATAATTAAGGAAGAAGTAAA+AGG | - | chr6_1:72075065-72075084 | Msa0892370:intron | 20.0% |
| !! | TAATTAAGGAAGAAGTAAAA+GGG | - | chr6_1:72075066-72075085 | Msa0892370:intron | 20.0% |
| !! | GTAATCAAATTTACAACATA+TGG | + | chr6_1:72075184-72075203 | None:intergenic | 20.0% |
| !!! | TATTTTATTTTTTGCATGTG+TGG | - | chr6_1:72075666-72075685 | Msa0892370:five_prime_UTR | 20.0% |
| ! | TGAAGTATATTTGGTTGTTA+GGG | + | chr6_1:72071379-72071398 | None:intergenic | 25.0% |
| ! | TTGAAGTATATTTGGTTGTT+AGG | + | chr6_1:72071380-72071399 | None:intergenic | 25.0% |
| ! | TTGACAAAGATACTATACAA+AGG | + | chr6_1:72071406-72071425 | None:intergenic | 25.0% |
| !!! | TCTTGATAGGATTGTTATTT+TGG | + | chr6_1:72071922-72071941 | None:intergenic | 25.0% |
| ! | ATATTGAAAGAAATGCGTAT+GGG | - | chr6_1:72071973-72071992 | Msa0892370:intron | 25.0% |
| ! | GTAATGTTACACTTTAGATA+TGG | + | chr6_1:72072020-72072039 | None:intergenic | 25.0% |
| !!! | ACAACAAGGTTTTATAAATC+GGG | + | chr6_1:72072163-72072182 | None:intergenic | 25.0% |
| ! | ATAATATGAATTGTCAGTAG+CGG | + | chr6_1:72072330-72072349 | None:intergenic | 25.0% |
| !! | GAAATTTGAAATCTGGTATA+TGG | - | chr6_1:72072671-72072690 | Msa0892370:intron | 25.0% |
| ! | GGTATATGGTTAGTATTAAT+CGG | - | chr6_1:72072685-72072704 | Msa0892370:intron | 25.0% |
| ! | GTATATGGTTAGTATTAATC+GGG | - | chr6_1:72072686-72072705 | Msa0892370:intron | 25.0% |
| ! | TATATGGTTAGTATTAATCG+GGG | - | chr6_1:72072687-72072706 | Msa0892370:intron | 25.0% |
| ! | TGATTAATGTCATCATGATT+AGG | - | chr6_1:72072724-72072743 | Msa0892370:intron | 25.0% |
| ! | GATTAATGTCATCATGATTA+GGG | - | chr6_1:72072725-72072744 | Msa0892370:intron | 25.0% |
| !!! | ATTGCTTCACTTTATTTTGT+AGG | + | chr6_1:72072802-72072821 | None:intergenic | 25.0% |
| ! | AAAGGTTGAACAATAACAAA+GGG | + | chr6_1:72072914-72072933 | None:intergenic | 25.0% |
| ! | AAAAGGTTGAACAATAACAA+AGG | + | chr6_1:72072915-72072934 | None:intergenic | 25.0% |
| ! | ACAATGCATTATTATATGCA+GGG | + | chr6_1:72073205-72073224 | None:intergenic | 25.0% |
| ! | TAAGCATAATTAATACTCCA+TGG | + | chr6_1:72073258-72073277 | None:intergenic | 25.0% |
| ! | TTTATGAAAAATTGTGCGAT+CGG | - | chr6_1:72073370-72073389 | Msa0892370:intron | 25.0% |
| !!! | TTTGTTATTAGAGATGTGTT+TGG | - | chr6_1:72073567-72073586 | Msa0892370:intron | 25.0% |
| ! | CCCAAATTTCTCTTATAAAT+AGG | + | chr6_1:72073685-72073704 | None:intergenic | 25.0% |
| ! | TCAACAAAAGTGAATGTATT+TGG | + | chr6_1:72073744-72073763 | None:intergenic | 25.0% |
| ! | CCTATTTATAAGAGAAAGTT+AGG | + | chr6_1:72073767-72073786 | None:intergenic | 25.0% |
| ! | CCTAACTTTCTCTTATAAAT+AGG | - | chr6_1:72073764-72073783 | Msa0892370:intron | 25.0% |
| ! | TAAACTTCTAATGGTCTATA+TGG | - | chr6_1:72073821-72073840 | Msa0892370:intron | 25.0% |
| !! | GTATCATATAGAACATGTTT+TGG | - | chr6_1:72073960-72073979 | Msa0892370:intron | 25.0% |
| ! | AAAAAACATCCTCATCTATA+AGG | + | chr6_1:72074237-72074256 | None:intergenic | 25.0% |
| ! | GTCATAGTTTATATAATGAG+TGG | - | chr6_1:72074508-72074527 | Msa0892370:intron | 25.0% |
| !!! | GTTTTTTAATGCAAGTACAA+GGG | + | chr6_1:72074592-72074611 | None:intergenic | 25.0% |
| !!! | TGTTTTTTAATGCAAGTACA+AGG | + | chr6_1:72074593-72074612 | None:intergenic | 25.0% |
| ! | AGAAAGATTTGTAATTGCAA+TGG | - | chr6_1:72074778-72074797 | Msa0892370:intron | 25.0% |
| ! | GACATTGCATAATATATACA+GGG | + | chr6_1:72074919-72074938 | None:intergenic | 25.0% |
| ! | AGACATTGCATAATATATAC+AGG | + | chr6_1:72074920-72074939 | None:intergenic | 25.0% |
| !! | TTTAGAGTTTGATGTTTGAT+AGG | - | chr6_1:72075089-72075108 | Msa0892370:intron | 25.0% |
| ! | ATATGGACAAAACTGTTAAT+TGG | + | chr6_1:72075145-72075164 | None:intergenic | 25.0% |
| !! | GGATACTCTTTTATTACATA+TGG | + | chr6_1:72075162-72075181 | None:intergenic | 25.0% |
| ! | TAATCAATTCCAGTCATTAT+CGG | + | chr6_1:72075235-72075254 | None:intergenic | 25.0% |
| !! | ATTGAATTGAATCATTTTGC+AGG | - | chr6_1:72075378-72075397 | Msa0892370:five_prime_UTR | 25.0% |
| ! | TTGAAGATTCAAATTCATAG+TGG | - | chr6_1:72075494-72075513 | Msa0892370:five_prime_UTR | 25.0% |
| !! | TTTGTTGTAGTTAGAAACAA+TGG | - | chr6_1:72075554-72075573 | Msa0892370:five_prime_UTR | 25.0% |
| TTACATTTGCCAGATATGTT+TGG | + | chr6_1:72071344-72071363 | None:intergenic | 30.0% | |
| !! | GAGTTCGTCTTCTTTTATTT+TGG | - | chr6_1:72071483-72071502 | Msa0892370:three_prime_UTR | 30.0% |
| TTTCCAAGGTTGTATTTCAA+TGG | + | chr6_1:72071531-72071550 | None:intergenic | 30.0% | |
| TGATGATCTTCTAATTTCCA+AGG | + | chr6_1:72071545-72071564 | None:intergenic | 30.0% | |
| ATTTGGGAGACAAAGATTAT+AGG | - | chr6_1:72071619-72071638 | Msa0892370:intron | 30.0% | |
| TCATGGAAGAAAACAAGAAA+TGG | - | chr6_1:72071651-72071670 | Msa0892370:intron | 30.0% | |
| ATAAATTCACATGTCTCCTA+AGG | - | chr6_1:72071823-72071842 | Msa0892370:intron | 30.0% | |
| GCAACACTTTAAATCTTGAT+AGG | + | chr6_1:72071935-72071954 | None:intergenic | 30.0% | |
| CATATTGAAAGAAATGCGTA+TGG | - | chr6_1:72071972-72071991 | Msa0892370:intron | 30.0% | |
| GATATGGATCACATATAAAC+TGG | + | chr6_1:72072004-72072023 | None:intergenic | 30.0% | |
| TTCTCTTATCGACAATATCA+AGG | - | chr6_1:72072107-72072126 | Msa0892370:intron | 30.0% | |
| AAAGCTAAACTCATACCATT+GGG | + | chr6_1:72072270-72072289 | None:intergenic | 30.0% | |
| AAAAGCTAAACTCATACCAT+TGG | + | chr6_1:72072271-72072290 | None:intergenic | 30.0% | |
| AATAAATAATCTTGGGGGAT+GGG | + | chr6_1:72072624-72072643 | None:intergenic | 30.0% | |
| AAATAAATAATCTTGGGGGA+TGG | + | chr6_1:72072625-72072644 | None:intergenic | 30.0% | |
| AATTTCTGATCATGTGAATG+AGG | - | chr6_1:72072757-72072776 | Msa0892370:intron | 30.0% | |
| GAAGCAATTACAAGATAAGA+AGG | - | chr6_1:72072814-72072833 | Msa0892370:intron | 30.0% | |
| TAAGAAGGAAGAGTTAATGA+AGG | - | chr6_1:72072829-72072848 | Msa0892370:intron | 30.0% | |
| ATGTCTAACACTCTTGATAA+AGG | + | chr6_1:72072989-72073008 | None:intergenic | 30.0% | |
| CATATACACTATAAGATCTG+AGG | - | chr6_1:72073069-72073088 | Msa0892370:intron | 30.0% | |
| ACCTTATAAGGTGAATAAGT+GGG | - | chr6_1:72073156-72073175 | Msa0892370:intron | 30.0% | |
| CAATGCATTATTATATGCAG+GGG | + | chr6_1:72073204-72073223 | None:intergenic | 30.0% | |
| GACAATGCATTATTATATGC+AGG | + | chr6_1:72073206-72073225 | None:intergenic | 30.0% | |
| CTTTCTCTTATAAATAGGAC+CGG | - | chr6_1:72073769-72073788 | Msa0892370:intron | 30.0% | |
| !! | TACTACATGGATTACTGTTT+TGG | - | chr6_1:72073853-72073872 | Msa0892370:intron | 30.0% |
| !!! | AGATGAGGATGTTTTTTTTG+TGG | - | chr6_1:72074240-72074259 | Msa0892370:CDS | 30.0% |
| CTAATAAGGAACCATTTCTA+AGG | + | chr6_1:72074477-72074496 | None:intergenic | 30.0% | |
| CTTAGAAATGGTTCCTTATT+AGG | - | chr6_1:72074475-72074494 | Msa0892370:intron | 30.0% | |
| !! | GACTCTCATTTTTCCTAATA+AGG | + | chr6_1:72074491-72074510 | None:intergenic | 30.0% |
| GAGAATATTACAAGTTGTCT+GGG | + | chr6_1:72074541-72074560 | None:intergenic | 30.0% | |
| TGAGAATATTACAAGTTGTC+TGG | + | chr6_1:72074542-72074561 | None:intergenic | 30.0% | |
| TAAAAAACACTGTACTCAGA+AGG | - | chr6_1:72074604-72074623 | Msa0892370:intron | 30.0% | |
| AAAAAACACTGTACTCAGAA+GGG | - | chr6_1:72074605-72074624 | Msa0892370:intron | 30.0% | |
| AGAAAGGTAGTACAAACATA+TGG | + | chr6_1:72074810-72074829 | None:intergenic | 30.0% | |
| AAAAAAAAAAGGACGCAGAA+AGG | + | chr6_1:72074826-72074845 | None:intergenic | 30.0% | |
| CATTCAATTTATTGCCTTGA+AGG | - | chr6_1:72075207-72075226 | Msa0892370:intron | 30.0% | |
| TCTGAGAATCCAAACATATC+TGG | - | chr6_1:72071332-72071351 | Msa0892370:three_prime_UTR | 35.0% | |
| AGAGCGTATACTATCTTTGT+GGG | + | chr6_1:72071430-72071449 | None:intergenic | 35.0% | |
| CATGATACTTGTGAGTCAAA+TGG | - | chr6_1:72071572-72071591 | Msa0892370:exon | 35.0% | |
| AAGAGACAGAAAGACAAAGA+AGG | - | chr6_1:72071681-72071700 | Msa0892370:intron | 35.0% | |
| AACAACAATATTGCCTCCTT+AGG | + | chr6_1:72071842-72071861 | None:intergenic | 35.0% | |
| ! | GGAGGCAATATTGTTGTTAA+CGG | - | chr6_1:72071844-72071863 | Msa0892370:intron | 35.0% |
| AAACTCAGCATCAAACAACA+AGG | + | chr6_1:72072177-72072196 | None:intergenic | 35.0% | |
| !!! | GGTATGAGTTTAGCTTTTGA+AGG | - | chr6_1:72072273-72072292 | Msa0892370:intron | 35.0% |
| ! | TTGAAGGAGTACGAATAAAG+AGG | - | chr6_1:72072289-72072308 | Msa0892370:intron | 35.0% |
| TGAACTAAGGGATTAAAGGA+GGG | + | chr6_1:72072584-72072603 | None:intergenic | 35.0% | |
| TTGAACTAAGGGATTAAAGG+AGG | + | chr6_1:72072585-72072604 | None:intergenic | 35.0% | |
| TGGTTGAACTAAGGGATTAA+AGG | + | chr6_1:72072588-72072607 | None:intergenic | 35.0% | |
| AACTCACATGGTTGAACTAA+GGG | + | chr6_1:72072596-72072615 | None:intergenic | 35.0% | |
| TAACTCACATGGTTGAACTA+AGG | + | chr6_1:72072597-72072616 | None:intergenic | 35.0% | |
| !!! | GCTTCACTTTATTTTGTAGG+TGG | + | chr6_1:72072799-72072818 | None:intergenic | 35.0% |
| ! | GTTATTGTTCAACCTTTTCC+TGG | - | chr6_1:72072917-72072936 | Msa0892370:intron | 35.0% |
| ! | TTAGACATGCTGCTTAAAGA+AGG | - | chr6_1:72073001-72073020 | Msa0892370:intron | 35.0% |
| ! | TAGACATGCTGCTTAAAGAA+GGG | - | chr6_1:72073002-72073021 | Msa0892370:intron | 35.0% |
| TGTACTTCCAACATGATAGA+AGG | - | chr6_1:72073040-72073059 | Msa0892370:intron | 35.0% | |
| GAATCTTCCTTCTATCATGT+TGG | + | chr6_1:72073050-72073069 | None:intergenic | 35.0% | |
| TGGCTAGAATTCACCTTATA+AGG | - | chr6_1:72073144-72073163 | Msa0892370:intron | 35.0% | |
| CACCTTATAAGGTGAATAAG+TGG | - | chr6_1:72073155-72073174 | Msa0892370:intron | 35.0% | |
| CCTTATAAGGTGAATAAGTG+GGG | - | chr6_1:72073157-72073176 | Msa0892370:intron | 35.0% | |
| GCATAATTAATACTCCATGG+TGG | + | chr6_1:72073255-72073274 | None:intergenic | 35.0% | |
| AAATTGTGCGATCGGTATAT+TGG | - | chr6_1:72073378-72073397 | Msa0892370:intron | 35.0% | |
| ATGAACGTGTGAAATGAGAA+AGG | + | chr6_1:72073531-72073550 | None:intergenic | 35.0% | |
| AAGCTGTAGTCTGATGATAT+GGG | - | chr6_1:72073598-72073617 | Msa0892370:intron | 35.0% | |
| ! | AGTCTGATGATATGGGTTAT+TGG | - | chr6_1:72073605-72073624 | Msa0892370:intron | 35.0% |
| ! | GTCTGATGATATGGGTTATT+GGG | - | chr6_1:72073606-72073625 | Msa0892370:intron | 35.0% |
| GGGACATTGAATGAGTATTA+AGG | - | chr6_1:72073626-72073645 | Msa0892370:intron | 35.0% | |
| CTCTTATAAATAGGATCGGA+GGG | + | chr6_1:72073676-72073695 | None:intergenic | 35.0% | |
| TCTCTTATAAATAGGATCGG+AGG | + | chr6_1:72073677-72073696 | None:intergenic | 35.0% | |
| CTCACAAGTCCTTAACAAAT+TGG | + | chr6_1:72073933-72073952 | None:intergenic | 35.0% | |
| !!! | ATCGTCTAGTTTTCAAGAGA+AGG | - | chr6_1:72074265-72074284 | Msa0892370:CDS | 35.0% |
| !!! | TCGTCTAGTTTTCAAGAGAA+GGG | - | chr6_1:72074266-72074285 | Msa0892370:intron | 35.0% |
| CAACAGAACTCTAATAACTC+TGG | + | chr6_1:72074303-72074322 | None:intergenic | 35.0% | |
| GTTATTAGAGTTCTGTTGAG+AGG | - | chr6_1:72074305-72074324 | Msa0892370:intron | 35.0% | |
| !! | CTAGTGGCTTCGTTTTTATA+CGG | - | chr6_1:72074858-72074877 | Msa0892370:intron | 35.0% |
| TGCATAATATATACAGGGTC+TGG | + | chr6_1:72074914-72074933 | None:intergenic | 35.0% | |
| ACTTGAGCATGATATTGCTT+CGG | + | chr6_1:72075281-72075300 | None:intergenic | 35.0% | |
| !! | CTCAAGATATTGTCGATTTC+AGG | + | chr6_1:72075426-72075445 | None:intergenic | 35.0% |
| AAAAAAGATCAACGAGCTCA+TGG | + | chr6_1:72075535-72075554 | None:intergenic | 35.0% | |
| GAGCGTATACTATCTTTGTG+GGG | + | chr6_1:72071429-72071448 | None:intergenic | 40.0% | |
| ! | GAGAGCGTATACTATCTTTG+TGG | + | chr6_1:72071431-72071450 | None:intergenic | 40.0% |
| CCAAGGTTGTATTTCAATGG+TGG | + | chr6_1:72071528-72071547 | None:intergenic | 40.0% | |
| CCACCATTGAAATACAACCT+TGG | - | chr6_1:72071525-72071544 | Msa0892370:three_prime_UTR | 40.0% | |
| ACTTGTGAGTCAAATGGTGA+AGG | - | chr6_1:72071578-72071597 | Msa0892370:exon | 40.0% | |
| CTTGTGAGTCAAATGGTGAA+GGG | - | chr6_1:72071579-72071598 | Msa0892370:exon | 40.0% | |
| CTATAGGAAGAAGCGATCTA+AGG | + | chr6_1:72071733-72071752 | None:intergenic | 40.0% | |
| AATTCACATGTCTCCTAAGG+AGG | - | chr6_1:72071826-72071845 | Msa0892370:intron | 40.0% | |
| AGGGAAGGAATAAAGATCCA+GGG | + | chr6_1:72072565-72072584 | None:intergenic | 40.0% | |
| ACAAATGCCACTACTCAAGA+TGG | - | chr6_1:72072866-72072885 | Msa0892370:intron | 40.0% | |
| ! | ATTGTTCAACCTTTTCCTGG+AGG | - | chr6_1:72072920-72072939 | Msa0892370:intron | 40.0% |
| CCCCACTTATTCACCTTATA+AGG | + | chr6_1:72073160-72073179 | None:intergenic | 40.0% | |
| !! | TGCCTCAAGAGCATTCTTTA+AGG | - | chr6_1:72073330-72073349 | Msa0892370:intron | 40.0% |
| TGCGATCGGTATATTGGAAA+TGG | - | chr6_1:72073384-72073403 | Msa0892370:intron | 40.0% | |
| CAAGCTGTAGTCTGATGATA+TGG | - | chr6_1:72073597-72073616 | Msa0892370:intron | 40.0% | |
| TCTCTTATAAATAGGACCGG+AGG | - | chr6_1:72073772-72073791 | Msa0892370:intron | 40.0% | |
| CTCTTATAAATAGGACCGGA+GGG | - | chr6_1:72073773-72073792 | Msa0892370:intron | 40.0% | |
| AGGAAAACATATACTCCCTC+CGG | + | chr6_1:72073791-72073810 | None:intergenic | 40.0% | |
| ATGGCATGTCTTGTACTACA+TGG | - | chr6_1:72073840-72073859 | Msa0892370:intron | 40.0% | |
| ! | ATCAGCTTTGACAAATCCAG+TGG | + | chr6_1:72074017-72074036 | None:intergenic | 40.0% |
| AATCTGAGTTCGATTCTTGG+TGG | + | chr6_1:72074357-72074376 | None:intergenic | 40.0% | |
| GAGAATCTGAGTTCGATTCT+TGG | + | chr6_1:72074360-72074379 | None:intergenic | 40.0% | |
| ATATTCTCATGACCGTCTAG+TGG | - | chr6_1:72074553-72074572 | Msa0892370:intron | 40.0% | |
| TATTCTCATGACCGTCTAGT+GGG | - | chr6_1:72074554-72074573 | Msa0892370:intron | 40.0% | |
| ! | AAGTACAAGGGTACACTAAC+CGG | + | chr6_1:72074580-72074599 | None:intergenic | 40.0% |
| GTGAATAAGTGACGTGTTTG+AGG | - | chr6_1:72074880-72074899 | Msa0892370:intron | 40.0% | |
| !! | AGTCATTATCGGTTCCTTCA+AGG | + | chr6_1:72075224-72075243 | None:intergenic | 40.0% |
| TTGAAGGAACCGATAATGAC+TGG | - | chr6_1:72075223-72075242 | Msa0892370:intron | 40.0% | |
| AATGAGGTTTCACCACTTGT+GGG | - | chr6_1:72075694-72075713 | Msa0892370:five_prime_UTR | 40.0% | |
| ! | AGGAAGAAGCGATCTAAGGT+TGG | + | chr6_1:72071729-72071748 | None:intergenic | 45.0% |
| CTTTGACAAGATTCGAACCC+TGG | - | chr6_1:72072545-72072564 | Msa0892370:intron | 45.0% | |
| GAGGGAAGGAATAAAGATCC+AGG | + | chr6_1:72072566-72072585 | None:intergenic | 45.0% | |
| CTAAGGGATTAAAGGAGGGA+AGG | + | chr6_1:72072580-72072599 | None:intergenic | 45.0% | |
| ACTAGAGCCATCTTGAGTAG+TGG | + | chr6_1:72072876-72072895 | None:intergenic | 45.0% | |
| ATCTCAAGTCCTCCAGGAAA+AGG | + | chr6_1:72072932-72072951 | None:intergenic | 45.0% | |
| ATTATTATATGCAGGGGCCG+AGG | + | chr6_1:72073198-72073217 | None:intergenic | 45.0% | |
| TACCAACTGAGCTATGCTCA+CGG | - | chr6_1:72073227-72073246 | Msa0892370:intron | 45.0% | |
| GGCCTTAAAGAATGCTCTTG+AGG | + | chr6_1:72073335-72073354 | None:intergenic | 45.0% | |
| TGGAATCCTTCAAGAGTCTC+CGG | - | chr6_1:72073442-72073461 | Msa0892370:intron | 45.0% | |
| GCTTTGACAAATCCAGTGGA+GGG | + | chr6_1:72074013-72074032 | None:intergenic | 45.0% | |
| ! | AGCTTTGACAAATCCAGTGG+AGG | + | chr6_1:72074014-72074033 | None:intergenic | 45.0% |
| TGCATGTGTGGACTTGAATG+AGG | - | chr6_1:72075678-72075697 | Msa0892370:five_prime_UTR | 45.0% | |
| GAATGAGGTTTCACCACTTG+TGG | - | chr6_1:72075693-72075712 | Msa0892370:five_prime_UTR | 45.0% | |
| !! | AAAAAGATAATATATTAATA+AGG | + | chr6_1:72074742-72074761 | None:intergenic | 5.0% |
| !! | TCTAAGGTTGGTGCAGAGGT+TGG | + | chr6_1:72071717-72071736 | None:intergenic | 50.0% |
| GGATGGGTACGTAACTCACA+TGG | + | chr6_1:72072608-72072627 | None:intergenic | 50.0% | |
| CACACAATCTCAAGTCCTCC+AGG | + | chr6_1:72072938-72072957 | None:intergenic | 50.0% | |
| ! | AGGTGAATAAGTGGGGTGTC+CGG | - | chr6_1:72073164-72073183 | Msa0892370:intron | 50.0% |
| GTGAGCATAGCTCAGTTGGT+AGG | + | chr6_1:72073228-72073247 | None:intergenic | 50.0% | |
| ACCAACTGAGCTATGCTCAC+GGG | - | chr6_1:72073228-72073247 | Msa0892370:intron | 50.0% | |
| GGAATCCTTCAAGAGTCTCC+GGG | - | chr6_1:72073443-72073462 | Msa0892370:intron | 50.0% | |
| GAATCCTTCAAGAGTCTCCG+GGG | - | chr6_1:72073444-72073463 | Msa0892370:intron | 50.0% | |
| AATCCTTCAAGAGTCTCCGG+GGG | - | chr6_1:72073445-72073464 | Msa0892370:intron | 50.0% | |
| GTCATAATAACGAGTGCCCC+CGG | + | chr6_1:72073464-72073483 | None:intergenic | 50.0% | |
| GGGTGGCGACAGATATTTAG+TGG | + | chr6_1:72073993-72074012 | None:intergenic | 50.0% | |
| TTGACAAATCCAGTGGAGGG+TGG | + | chr6_1:72074010-72074029 | None:intergenic | 50.0% | |
| ACACTGTACTCAGAAGGGCT+TGG | - | chr6_1:72074610-72074629 | Msa0892370:intron | 50.0% | |
| CACTGTACTCAGAAGGGCTT+GGG | - | chr6_1:72074611-72074630 | Msa0892370:intron | 50.0% | |
| !! | GCGATCTAAGGTTGGTGCAG+AGG | + | chr6_1:72071721-72071740 | None:intergenic | 55.0% |
| TCGTCGAAGATGCAGCCCAA+TGG | - | chr6_1:72072252-72072271 | Msa0892370:intron | 55.0% | |
| ! | GGTGAATAAGTGGGGTGTCC+GGG | - | chr6_1:72073165-72073184 | Msa0892370:intron | 55.0% |
| ! | GTGAATAAGTGGGGTGTCCG+GGG | - | chr6_1:72073166-72073185 | Msa0892370:intron | 55.0% |
| TCCCGTGAGCATAGCTCAGT+TGG | + | chr6_1:72073232-72073251 | None:intergenic | 55.0% | |
| ACACTAACCGGCCCACTAGA+CGG | + | chr6_1:72074568-72074587 | None:intergenic | 55.0% | |
| ACTCAGAAGGGCTTGGGTGT+TGG | - | chr6_1:72074617-72074636 | Msa0892370:intron | 55.0% | |
| CTATGCTCACGGGACCACCA+TGG | - | chr6_1:72073238-72073257 | Msa0892370:intron | 60.0% | |
| TATCTGTCGCCACCCTCCAC+TGG | - | chr6_1:72073998-72074017 | Msa0892370:intron | 60.0% | |
| ! | CTCATGACCGTCTAGTGGGC+CGG | - | chr6_1:72074558-72074577 | Msa0892370:intron | 60.0% |
| !! | CAGAAGGGCTTGGGTGTTGG+TGG | - | chr6_1:72074620-72074639 | Msa0892370:intron | 60.0% |
| !! | GGCTTGGGTGTTGGTGGTGT+GGG | - | chr6_1:72074626-72074645 | Msa0892370:intron | 60.0% |
| !! | TTGGGTGTTGGTGGTGTGGG+TGG | - | chr6_1:72074629-72074648 | Msa0892370:intron | 60.0% |
| !! | GTTGGTGGTGTGGGTGGCTT+AGG | - | chr6_1:72074635-72074654 | Msa0892370:intron | 60.0% |
| GGTGTCCGGGGTTCGAACCT+CGG | - | chr6_1:72073178-72073197 | Msa0892370:intron | 65.0% | |
| GTGCCCCCGGAGACTCTTGA+AGG | + | chr6_1:72073451-72073470 | None:intergenic | 65.0% | |
| !! | GGGCTTGGGTGTTGGTGGTG+TGG | - | chr6_1:72074625-72074644 | Msa0892370:intron | 65.0% |
| AGGGGCCGAGGTTCGAACCC+CGG | + | chr6_1:72073186-72073205 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 72071308 | 72075722 | 72071308 | ID=Msa0892370;Name=Msa0892370 |
| chr6_1 | mRNA | 72071308 | 72075722 | 72071308 | ID=Msa0892370-mRNA-1;Parent=Msa0892370;Name=Msa0892370-mRNA-1;_AED=0.05;_eAED=0.05;_QI=345|0.66|0.75|1|1|1|4|273|160 |
| chr6_1 | exon | 72071308 | 72071630 | 72071308 | ID=Msa0892370-mRNA-1:exon:12350;Parent=Msa0892370-mRNA-1 |
| chr6_1 | exon | 72071732 | 72071801 | 72071732 | ID=Msa0892370-mRNA-1:exon:12349;Parent=Msa0892370-mRNA-1 |
| chr6_1 | exon | 72074033 | 72074284 | 72074033 | ID=Msa0892370-mRNA-1:exon:12348;Parent=Msa0892370-mRNA-1 |
| chr6_1 | exon | 72075267 | 72075722 | 72075267 | ID=Msa0892370-mRNA-1:exon:12347;Parent=Msa0892370-mRNA-1 |
| chr6_1 | five_prime_UTR | 72075378 | 72075722 | 72075378 | ID=Msa0892370-mRNA-1:five_prime_utr;Parent=Msa0892370-mRNA-1 |
| chr6_1 | CDS | 72075267 | 72075377 | 72075267 | ID=Msa0892370-mRNA-1:cds;Parent=Msa0892370-mRNA-1 |
| chr6_1 | CDS | 72074033 | 72074284 | 72074033 | ID=Msa0892370-mRNA-1:cds;Parent=Msa0892370-mRNA-1 |
| chr6_1 | CDS | 72071732 | 72071801 | 72071732 | ID=Msa0892370-mRNA-1:cds;Parent=Msa0892370-mRNA-1 |
| chr6_1 | CDS | 72071581 | 72071630 | 72071581 | ID=Msa0892370-mRNA-1:cds;Parent=Msa0892370-mRNA-1 |
| chr6_1 | three_prime_UTR | 72071308 | 72071580 | 72071308 | ID=Msa0892370-mRNA-1:three_prime_utr;Parent=Msa0892370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
