Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0957630 | XP_024630580.1 | 79.581 | 191 | 8 | 1 | 1 | 160 | 2 | 192 | 2.64e-101 | 299 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0957630 | sp|Q9FLI1|BH036_ARATH | 46.364 | 110 | 53 | 2 | 5 | 109 | 2 | 110 | 5.79e-25 | 97.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0957630 | A0A396HJA8 | 79.581 | 191 | 8 | 1 | 1 | 160 | 2 | 192 | 1.26e-101 | 299 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0957630 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0892370 | Msa0957630 | 0.986806 | 4.936374e-168 | -8.615850e-47 |
| Msa0892380 | Msa0957630 | 0.952463 | 2.297280e-110 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0957630 | MtrunA17_Chr6g0474681 | 79.581 | 191 | 8 | 1 | 1 | 160 | 2 | 192 | 2.43e-105 | 299 |
| Msa0957630 | MtrunA17_Chr1g0204351 | 38.150 | 173 | 78 | 6 | 1 | 144 | 71 | 243 | 1.59e-25 | 97.8 |
| Msa0957630 | MtrunA17_Chr6g0474671 | 49.515 | 103 | 49 | 2 | 5 | 104 | 71 | 173 | 2.63e-25 | 97.1 |
| Msa0957630 | MtrunA17_Chr1g0204361 | 43.750 | 112 | 55 | 4 | 3 | 109 | 17 | 125 | 1.29e-22 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0957630 | AT5G51780.1 | 46.364 | 110 | 53 | 2 | 5 | 109 | 2 | 110 | 5.88e-26 | 97.4 |
| Msa0957630 | AT5G51780.2 | 46.364 | 110 | 53 | 2 | 5 | 109 | 25 | 133 | 1.65e-25 | 97.1 |
| Msa0957630 | AT4G25410.1 | 40.678 | 118 | 65 | 3 | 9 | 121 | 47 | 164 | 3.89e-23 | 91.3 |
| Msa0957630 | AT4G25400.2 | 45.455 | 110 | 55 | 3 | 2 | 109 | 21 | 127 | 1.08e-22 | 89.4 |
| Msa0957630 | AT4G25400.1 | 44.037 | 109 | 58 | 2 | 2 | 109 | 21 | 127 | 1.12e-22 | 89.4 |
| Msa0957630 | AT5G51790.4 | 43.548 | 124 | 65 | 4 | 2 | 121 | 24 | 146 | 1.48e-21 | 86.7 |
| Msa0957630 | AT5G51790.1 | 43.548 | 124 | 65 | 4 | 2 | 121 | 24 | 146 | 2.11e-21 | 86.3 |
| Msa0957630 | AT5G51790.2 | 43.548 | 124 | 65 | 4 | 2 | 121 | 89 | 211 | 6.46e-21 | 86.3 |
| Msa0957630 | AT5G51790.3 | 43.548 | 124 | 65 | 4 | 2 | 121 | 89 | 211 | 6.89e-21 | 86.3 |
| Msa0957630 | AT1G12540.1 | 43.651 | 126 | 57 | 3 | 3 | 116 | 73 | 196 | 7.23e-21 | 86.3 |
| Msa0957630 | AT1G62975.2 | 49.398 | 83 | 40 | 1 | 3 | 85 | 72 | 152 | 3.01e-20 | 84.3 |
| Msa0957630 | AT1G62975.1 | 49.398 | 83 | 40 | 1 | 3 | 85 | 72 | 152 | 4.75e-20 | 84.0 |
Find 49 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGGAAATTGAAGTATATT+TGG | 0.176459 | 6_3:+69495152 | None:intergenic |
| CTCAAGATATTGTCGATTTC+AGG | 0.181886 | 6_3:+69491113 | None:intergenic |
| GTTTCACCACTTGTGGGATT+TGG | 0.215430 | 6_3:-69490836 | Msa0957630:three_prime_UTR |
| TTGAAGTATATTTGGTTGTT+AGG | 0.250422 | 6_3:+69495160 | None:intergenic |
| TTTCACCACTTGTGGGATTT+GGG | 0.284053 | 6_3:-69490835 | None:intergenic |
| ATTTGGGAGACAAAGATTAT+AGG | 0.305099 | 6_3:-69494918 | Msa0957630:five_prime_UTR |
| TCTTCCTATAGAATATATTA+AGG | 0.316735 | 6_3:-69494795 | Msa0957630:intron |
| TTACATTTGCCAGATATGTT+TGG | 0.363977 | 6_3:+69495196 | None:intergenic |
| TAATCAATTCCAGTCATTAT+CGG | 0.381800 | 6_3:+69491304 | None:intergenic |
| TCTGAGAATCCAAACATATC+TGG | 0.381962 | 6_3:-69495205 | Msa0957630:five_prime_UTR |
| TGAAGTATATTTGGTTGTTA+GGG | 0.384471 | 6_3:+69495161 | None:intergenic |
| ATTATAGGATATTGTTATCA+TGG | 0.391937 | 6_3:-69494903 | Msa0957630:exon |
| ATGTCTAACACTCTTGATAA+AGG | 0.395077 | 6_3:+69493551 | None:intergenic |
| TTTCCAAGGTTGTATTTCAA+TGG | 0.407577 | 6_3:+69495009 | None:intergenic |
| CTATAGGAAGAAGCGATCTA+AGG | 0.415824 | 6_3:+69494807 | None:intergenic |
| TCATGGAAGAAAACAAGAAA+TGG | 0.438064 | 6_3:-69494886 | Msa0957630:CDS |
| ATCTCAAGTCCTCCAGGAAA+AGG | 0.460588 | 6_3:+69493608 | None:intergenic |
| AATGAGGTTTCACCACTTGT+GGG | 0.464388 | 6_3:-69490842 | Msa0957630:three_prime_UTR |
| ACTTGAGCATGATATTGCTT+CGG | 0.469019 | 6_3:+69491258 | None:intergenic |
| AGAGCGTATACTATCTTTGT+GGG | 0.473483 | 6_3:+69495110 | None:intergenic |
| CTAACCTTAATATATTCTAT+AGG | 0.474465 | 6_3:+69494791 | None:intergenic |
| GAATGAGGTTTCACCACTTG+TGG | 0.479464 | 6_3:-69490843 | Msa0957630:three_prime_UTR |
| GAAGCAATTACAAGATAAGA+AGG | 0.481546 | 6_3:-69493723 | Msa0957630:CDS |
| GAGAGCGTATACTATCTTTG+TGG | 0.506519 | 6_3:+69495109 | None:intergenic |
| TAAGAAGGAAGAGTTAATGA+AGG | 0.514489 | 6_3:-69493708 | Msa0957630:CDS |
| TGATGATCTTCTAATTTCCA+AGG | 0.516391 | 6_3:+69494995 | None:intergenic |
| TTGAAGATTCAAATTCATAG+TGG | 0.521469 | 6_3:-69491042 | Msa0957630:three_prime_UTR |
| CACACAATCTCAAGTCCTCC+AGG | 0.527587 | 6_3:+69493602 | None:intergenic |
| AATTTCTGATCATGTGAATG+AGG | 0.530841 | 6_3:-69493780 | Msa0957630:CDS |
| CATGATACTTGTGAGTCAAA+TGG | 0.531228 | 6_3:-69494965 | Msa0957630:five_prime_UTR |
| TTGAAGGAACCGATAATGAC+TGG | 0.537483 | 6_3:-69491313 | Msa0957630:intron |
| TCTAAGGTTGGTGCAGAGGT+TGG | 0.539114 | 6_3:+69494823 | None:intergenic |
| TGCATGTGTGGACTTGAATG+AGG | 0.542338 | 6_3:-69490858 | Msa0957630:three_prime_UTR |
| TTTGTTGTAGTTAGAAACAA+TGG | 0.544147 | 6_3:-69490982 | Msa0957630:three_prime_UTR |
| AAAGGTTGAACAATAACAAA+GGG | 0.545126 | 6_3:+69493626 | None:intergenic |
| GCGATCTAAGGTTGGTGCAG+AGG | 0.557780 | 6_3:+69494819 | None:intergenic |
| AAGAGACAGAAAGACAAAGA+AGG | 0.564940 | 6_3:-69494856 | Msa0957630:CDS |
| TGATCTTATCTTATATGTGA+AGG | 0.566527 | 6_3:-69495230 | Msa0957630:five_prime_UTR |
| CTTGTGAGTCAAATGGTGAA+GGG | 0.569536 | 6_3:-69494958 | Msa0957630:five_prime_UTR |
| CCAAGGTTGTATTTCAATGG+TGG | 0.574419 | 6_3:+69495012 | None:intergenic |
| CCACCATTGAAATACAACCT+TGG | 0.577393 | 6_3:-69495012 | Msa0957630:five_prime_UTR |
| ACAAATGCCACTACTCAAGA+TGG | 0.579156 | 6_3:-69493671 | Msa0957630:CDS |
| AGGAAGAAGCGATCTAAGGT+TGG | 0.595316 | 6_3:+69494811 | None:intergenic |
| AAAAGGTTGAACAATAACAA+AGG | 0.600268 | 6_3:+69493625 | None:intergenic |
| ACTTGTGAGTCAAATGGTGA+AGG | 0.611143 | 6_3:-69494959 | Msa0957630:five_prime_UTR |
| CTGAACCCAAATCCCACAAG+TGG | 0.621804 | 6_3:+69490830 | None:intergenic |
| ACTAGAGCCATCTTGAGTAG+TGG | 0.645479 | 6_3:+69493664 | None:intergenic |
| TTGACAAAGATACTATACAA+AGG | 0.681733 | 6_3:+69495134 | None:intergenic |
| GAGCGTATACTATCTTTGTG+GGG | 0.690864 | 6_3:+69495111 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGTAGAATTTTTATTATT+TGG | - | chr6_3:69491130-69491149 | Msa0957630:CDS | 10.0% |
| !!! | AAGTAGAATTTTTATTATTT+GGG | - | chr6_3:69491131-69491150 | Msa0957630:CDS | 10.0% |
| !!! | TGGAAATATTTAATTTTTTA+TGG | - | chr6_3:69492932-69492951 | Msa0957630:intron | 10.0% |
| !! | AAAATTAATAATCTCAAAAT+AGG | - | chr6_3:69493691-69493710 | Msa0957630:CDS | 10.0% |
| !! | AAAATTAAAAATACAAAAGA+AGG | + | chr6_3:69494212-69494231 | None:intergenic | 10.0% |
| !!! | TAATATATTATCTTTTTTGT+TGG | - | chr6_3:69494273-69494292 | Msa0957630:intron | 10.0% |
| !! | ACAAGAAAATAAATAATCTT+GGG | + | chr6_3:69492159-69492178 | None:intergenic | 15.0% |
| !! | AACAAGAAAATAAATAATCT+TGG | + | chr6_3:69492160-69492179 | None:intergenic | 15.0% |
| !!! | TTTATTTGAAATTTGAAATC+TGG | - | chr6_3:69492192-69492211 | Msa0957630:intron | 15.0% |
| !! | TATAATAGTTGCAATATTTA+AGG | - | chr6_3:69492822-69492841 | Msa0957630:intron | 15.0% |
| !! | TATGGAAAAATTTCTTATTA+TGG | - | chr6_3:69492950-69492969 | Msa0957630:intron | 15.0% |
| !! | ATCTATAAAACTAAACAATT+AGG | + | chr6_3:69493953-69493972 | None:intergenic | 15.0% |
| !!! | GTATTTTTAATTTTTTGTGT+CGG | - | chr6_3:69494218-69494237 | Msa0957630:intron | 15.0% |
| !!! | ACTTATTTTTGCTATATATA+AGG | + | chr6_3:69494503-69494522 | None:intergenic | 15.0% |
| !! | TGTTAATTGGTTAATTTATT+AGG | + | chr6_3:69494661-69494680 | None:intergenic | 15.0% |
| !! | TAATCAAATTTACAACATAT+GGG | + | chr6_3:69494712-69494731 | None:intergenic | 15.0% |
| !! | AAAGGAAATTGAAGTATATT+TGG | + | chr6_3:69490916-69490935 | None:intergenic | 20.0% |
| !!! | TTTTAATTATTTGGCTATAG+AGG | + | chr6_3:69490988-69491007 | None:intergenic | 20.0% |
| !!! | GAACTCAACTTTTAATTATT+TGG | + | chr6_3:69490997-69491016 | None:intergenic | 20.0% |
| !! | ATTATAGGATATTGTTATCA+TGG | - | chr6_3:69491162-69491181 | Msa0957630:intron | 20.0% |
| !! | TCTTCCTATAGAATATATTA+AGG | - | chr6_3:69491270-69491289 | Msa0957630:CDS | 20.0% |
| !! | CTAACCTTAATATATTCTAT+AGG | + | chr6_3:69491277-69491296 | None:intergenic | 20.0% |
| !! | ATATGAATCTCATTTAAATG+TGG | + | chr6_3:69491485-69491504 | None:intergenic | 20.0% |
| !!! | TACGTTTATACTCTTTTATT+AGG | + | chr6_3:69491581-69491600 | None:intergenic | 20.0% |
| !!! | AACAACAAGGTTTTATAAAT+CGG | + | chr6_3:69491692-69491711 | None:intergenic | 20.0% |
| !!! | GTAACATAATGTTTTCTTAT+AGG | + | chr6_3:69491884-69491903 | None:intergenic | 20.0% |
| !! | AAGAAAATAAATAATCTTGG+GGG | + | chr6_3:69492157-69492176 | None:intergenic | 20.0% |
| !! | CAAGAAAATAAATAATCTTG+GGG | + | chr6_3:69492158-69492177 | None:intergenic | 20.0% |
| !! | TAGGAAAAAAAAATAATGCA+TGG | + | chr6_3:69492651-69492670 | None:intergenic | 20.0% |
| !!! | CATAAATAGTTGTTACTTAA+AGG | + | chr6_3:69492884-69492903 | None:intergenic | 20.0% |
| !! | ATTTCTCTTATAAATAGGAT+CGG | + | chr6_3:69493208-69493227 | None:intergenic | 20.0% |
| !! | TCCTATTTATAAGAGAAATT+TGG | - | chr6_3:69493209-69493228 | Msa0957630:intron | 20.0% |
| !! | CCTATTTATAAGAGAAATTT+GGG | - | chr6_3:69493210-69493229 | Msa0957630:intron | 20.0% |
| !! | TAGAAGTTTACATTATTACA+AGG | + | chr6_3:69493339-69493358 | None:intergenic | 20.0% |
| !! | GTAATAATGTAAACTTCTAA+TGG | - | chr6_3:69493340-69493359 | Msa0957630:intron | 20.0% |
| !!! | GAAAATTAACCAATTTGTTA+AGG | - | chr6_3:69493449-69493468 | Msa0957630:intron | 20.0% |
| !!! | CATCTATAAGGATTTTTTTA+TGG | + | chr6_3:69493753-69493772 | None:intergenic | 20.0% |
| !! | TAAAAAAATCCTTATAGATG+AGG | - | chr6_3:69493753-69493772 | Msa0957630:CDS | 20.0% |
| !! | TATCAAATGATGAATTGTTT+AGG | + | chr6_3:69493910-69493929 | None:intergenic | 20.0% |
| !!! | ATTGTTTAGTTTTATAGATG+AGG | - | chr6_3:69493954-69493973 | Msa0957630:intron | 20.0% |
| !! | TAAAAGTTATTCCTTAGAAA+TGG | - | chr6_3:69493991-69494010 | Msa0957630:intron | 20.0% |
| !! | AGGAAGTGAATAAAATATTA+TGG | + | chr6_3:69494192-69494211 | None:intergenic | 20.0% |
| !!! | TTTTTTATTACATAGTCTAG+TGG | - | chr6_3:69494371-69494390 | Msa0957630:intron | 20.0% |
| !!! | CTCATTTTTGCTTATAATTA+AGG | - | chr6_3:69494581-69494600 | Msa0957630:intron | 20.0% |
| !! | ATAATTAAGGAAGAAGTAAA+AGG | - | chr6_3:69494594-69494613 | Msa0957630:intron | 20.0% |
| !! | TAATTAAGGAAGAAGTAAAA+GGG | - | chr6_3:69494595-69494614 | Msa0957630:intron | 20.0% |
| !! | GTAATCAAATTTACAACATA+TGG | + | chr6_3:69494713-69494732 | None:intergenic | 20.0% |
| !!! | TATTTTATTTTTTGCATGTG+TGG | - | chr6_3:69495195-69495214 | Msa0957630:five_prime_UTR | 20.0% |
| ! | TGAAGTATATTTGGTTGTTA+GGG | + | chr6_3:69490907-69490926 | None:intergenic | 25.0% |
| ! | TTGAAGTATATTTGGTTGTT+AGG | + | chr6_3:69490908-69490927 | None:intergenic | 25.0% |
| ! | TTGACAAAGATACTATACAA+AGG | + | chr6_3:69490934-69490953 | None:intergenic | 25.0% |
| !!! | TCTTGATAGGATTGTTATTT+TGG | + | chr6_3:69491450-69491469 | None:intergenic | 25.0% |
| ! | ATATTGAAAGAAATGCGTAT+GGG | - | chr6_3:69491501-69491520 | Msa0957630:intron | 25.0% |
| ! | GTAATGTTACACTTTAGATA+TGG | + | chr6_3:69491548-69491567 | None:intergenic | 25.0% |
| !!! | ACAACAAGGTTTTATAAATC+GGG | + | chr6_3:69491691-69491710 | None:intergenic | 25.0% |
| ! | ATAATATGAATTGTCAGTAG+CGG | + | chr6_3:69491858-69491877 | None:intergenic | 25.0% |
| !! | GAAATTTGAAATCTGGTATA+TGG | - | chr6_3:69492199-69492218 | Msa0957630:intron | 25.0% |
| ! | GGTATATGGTTAGTATTAAT+CGG | - | chr6_3:69492213-69492232 | Msa0957630:intron | 25.0% |
| ! | GTATATGGTTAGTATTAATC+GGG | - | chr6_3:69492214-69492233 | Msa0957630:intron | 25.0% |
| ! | TATATGGTTAGTATTAATCG+GGG | - | chr6_3:69492215-69492234 | Msa0957630:intron | 25.0% |
| ! | TGATTAATGTCATCATGATT+AGG | - | chr6_3:69492252-69492271 | Msa0957630:intron | 25.0% |
| ! | GATTAATGTCATCATGATTA+GGG | - | chr6_3:69492253-69492272 | Msa0957630:intron | 25.0% |
| !!! | ATTGCTTCACTTTATTTTGT+AGG | + | chr6_3:69492330-69492349 | None:intergenic | 25.0% |
| ! | AAAGGTTGAACAATAACAAA+GGG | + | chr6_3:69492442-69492461 | None:intergenic | 25.0% |
| ! | AAAAGGTTGAACAATAACAA+AGG | + | chr6_3:69492443-69492462 | None:intergenic | 25.0% |
| !!! | GCATTATTTTTTTTTCCTAG+TGG | - | chr6_3:69492652-69492671 | Msa0957630:intron | 25.0% |
| ! | ACAATGCATTATTATATGCA+GGG | + | chr6_3:69492733-69492752 | None:intergenic | 25.0% |
| ! | TAAGCATAATTAATACTCCA+TGG | + | chr6_3:69492786-69492805 | None:intergenic | 25.0% |
| ! | TTTATGAAAAATTGTGCGAT+CGG | - | chr6_3:69492898-69492917 | Msa0957630:intron | 25.0% |
| !!! | TTTGTTATTAGAGATGTGTT+TGG | - | chr6_3:69493095-69493114 | Msa0957630:intron | 25.0% |
| ! | CCCAAATTTCTCTTATAAAT+AGG | + | chr6_3:69493213-69493232 | None:intergenic | 25.0% |
| ! | TCAACAAAAGTGAATGTATT+TGG | + | chr6_3:69493272-69493291 | None:intergenic | 25.0% |
| ! | CCTATTTATAAGAGAAAGTT+AGG | + | chr6_3:69493295-69493314 | None:intergenic | 25.0% |
| ! | CCTAACTTTCTCTTATAAAT+AGG | - | chr6_3:69493292-69493311 | Msa0957630:intron | 25.0% |
| ! | TAAACTTCTAATGGTCTATA+TGG | - | chr6_3:69493349-69493368 | Msa0957630:intron | 25.0% |
| !! | GTATCATATAGAACATGTTT+TGG | - | chr6_3:69493488-69493507 | Msa0957630:intron | 25.0% |
| ! | AAAAAACATCCTCATCTATA+AGG | + | chr6_3:69493765-69493784 | None:intergenic | 25.0% |
| ! | GTCATAGTTTATATAATGAG+TGG | - | chr6_3:69494036-69494055 | Msa0957630:intron | 25.0% |
| !!! | GTTTTTTAATGCAAGTACAA+GGG | + | chr6_3:69494120-69494139 | None:intergenic | 25.0% |
| !!! | TGTTTTTTAATGCAAGTACA+AGG | + | chr6_3:69494121-69494140 | None:intergenic | 25.0% |
| ! | AGAAAGATTTGTAATTGCAA+TGG | - | chr6_3:69494306-69494325 | Msa0957630:intron | 25.0% |
| ! | GACATTGCATAATATATACA+GGG | + | chr6_3:69494448-69494467 | None:intergenic | 25.0% |
| ! | AGACATTGCATAATATATAC+AGG | + | chr6_3:69494449-69494468 | None:intergenic | 25.0% |
| !! | TTTAGAGTTTGATGTTTGAT+AGG | - | chr6_3:69494618-69494637 | Msa0957630:intron | 25.0% |
| ! | ATATGGACAAAACTGTTAAT+TGG | + | chr6_3:69494674-69494693 | None:intergenic | 25.0% |
| !! | GGATACTCTTTTATTACATA+TGG | + | chr6_3:69494691-69494710 | None:intergenic | 25.0% |
| ! | TAATCAATTCCAGTCATTAT+CGG | + | chr6_3:69494764-69494783 | None:intergenic | 25.0% |
| !! | ATTGAATTGAATCATTTTGC+AGG | - | chr6_3:69494907-69494926 | Msa0957630:five_prime_UTR | 25.0% |
| ! | TTGAAGATTCAAATTCATAG+TGG | - | chr6_3:69495023-69495042 | Msa0957630:five_prime_UTR | 25.0% |
| !! | TTTGTTGTAGTTAGAAACAA+TGG | - | chr6_3:69495083-69495102 | Msa0957630:five_prime_UTR | 25.0% |
| TTACATTTGCCAGATATGTT+TGG | + | chr6_3:69490872-69490891 | None:intergenic | 30.0% | |
| !! | GAGTTCGTCTTCTTTTATTT+TGG | - | chr6_3:69491011-69491030 | Msa0957630:three_prime_UTR | 30.0% |
| TTTCCAAGGTTGTATTTCAA+TGG | + | chr6_3:69491059-69491078 | None:intergenic | 30.0% | |
| TGATGATCTTCTAATTTCCA+AGG | + | chr6_3:69491073-69491092 | None:intergenic | 30.0% | |
| ATTTGGGAGACAAAGATTAT+AGG | - | chr6_3:69491147-69491166 | Msa0957630:intron | 30.0% | |
| TCATGGAAGAAAACAAGAAA+TGG | - | chr6_3:69491179-69491198 | Msa0957630:intron | 30.0% | |
| ATAAATTCACATGTCTCCTA+AGG | - | chr6_3:69491351-69491370 | Msa0957630:intron | 30.0% | |
| GCAACACTTTAAATCTTGAT+AGG | + | chr6_3:69491463-69491482 | None:intergenic | 30.0% | |
| CATATTGAAAGAAATGCGTA+TGG | - | chr6_3:69491500-69491519 | Msa0957630:intron | 30.0% | |
| GATATGGATCACATATAAAC+TGG | + | chr6_3:69491532-69491551 | None:intergenic | 30.0% | |
| TTCTCTTATCGACAATATCA+AGG | - | chr6_3:69491635-69491654 | Msa0957630:intron | 30.0% | |
| AAAGCTAAACTCATACCATT+GGG | + | chr6_3:69491798-69491817 | None:intergenic | 30.0% | |
| AAAAGCTAAACTCATACCAT+TGG | + | chr6_3:69491799-69491818 | None:intergenic | 30.0% | |
| AATAAATAATCTTGGGGGAT+GGG | + | chr6_3:69492152-69492171 | None:intergenic | 30.0% | |
| AAATAAATAATCTTGGGGGA+TGG | + | chr6_3:69492153-69492172 | None:intergenic | 30.0% | |
| AATTTCTGATCATGTGAATG+AGG | - | chr6_3:69492285-69492304 | Msa0957630:intron | 30.0% | |
| GAAGCAATTACAAGATAAGA+AGG | - | chr6_3:69492342-69492361 | Msa0957630:intron | 30.0% | |
| TAAGAAGGAAGAGTTAATGA+AGG | - | chr6_3:69492357-69492376 | Msa0957630:intron | 30.0% | |
| ATGTCTAACACTCTTGATAA+AGG | + | chr6_3:69492517-69492536 | None:intergenic | 30.0% | |
| CATATACACTATAAGATCTG+AGG | - | chr6_3:69492597-69492616 | Msa0957630:intron | 30.0% | |
| ACCTTATAAGGTGAATAAGT+GGG | - | chr6_3:69492684-69492703 | Msa0957630:intron | 30.0% | |
| CAATGCATTATTATATGCAG+GGG | + | chr6_3:69492732-69492751 | None:intergenic | 30.0% | |
| GACAATGCATTATTATATGC+AGG | + | chr6_3:69492734-69492753 | None:intergenic | 30.0% | |
| CTTTCTCTTATAAATAGGAC+CGG | - | chr6_3:69493297-69493316 | Msa0957630:intron | 30.0% | |
| !! | TACTACATGGATTACTGTTT+TGG | - | chr6_3:69493381-69493400 | Msa0957630:intron | 30.0% |
| !!! | AGATGAGGATGTTTTTTTTG+TGG | - | chr6_3:69493768-69493787 | Msa0957630:CDS | 30.0% |
| CTAATAAGGAACCATTTCTA+AGG | + | chr6_3:69494005-69494024 | None:intergenic | 30.0% | |
| CTTAGAAATGGTTCCTTATT+AGG | - | chr6_3:69494003-69494022 | Msa0957630:intron | 30.0% | |
| !! | GACTCTCATTTTTCCTAATA+AGG | + | chr6_3:69494019-69494038 | None:intergenic | 30.0% |
| GAGAATATTACAAGTTGTCT+GGG | + | chr6_3:69494069-69494088 | None:intergenic | 30.0% | |
| TGAGAATATTACAAGTTGTC+TGG | + | chr6_3:69494070-69494089 | None:intergenic | 30.0% | |
| TAAAAAACACTGTACTCAGA+AGG | - | chr6_3:69494132-69494151 | Msa0957630:intron | 30.0% | |
| AAAAAACACTGTACTCAGAA+GGG | - | chr6_3:69494133-69494152 | Msa0957630:intron | 30.0% | |
| AGAAAGGTAGTACAAACATA+TGG | + | chr6_3:69494338-69494357 | None:intergenic | 30.0% | |
| AAAAAAAAAAGGACGCAGAA+AGG | + | chr6_3:69494354-69494373 | None:intergenic | 30.0% | |
| CATTCAATTTATTGCCTTGA+AGG | - | chr6_3:69494736-69494755 | Msa0957630:intron | 30.0% | |
| TCTGAGAATCCAAACATATC+TGG | - | chr6_3:69490860-69490879 | Msa0957630:three_prime_UTR | 35.0% | |
| AGAGCGTATACTATCTTTGT+GGG | + | chr6_3:69490958-69490977 | None:intergenic | 35.0% | |
| CATGATACTTGTGAGTCAAA+TGG | - | chr6_3:69491100-69491119 | Msa0957630:exon | 35.0% | |
| AAGAGACAGAAAGACAAAGA+AGG | - | chr6_3:69491209-69491228 | Msa0957630:intron | 35.0% | |
| AACAACAATATTGCCTCCTT+AGG | + | chr6_3:69491370-69491389 | None:intergenic | 35.0% | |
| ! | GGAGGCAATATTGTTGTTAA+CGG | - | chr6_3:69491372-69491391 | Msa0957630:intron | 35.0% |
| AAACTCAGCATCAAACAACA+AGG | + | chr6_3:69491705-69491724 | None:intergenic | 35.0% | |
| !!! | GGTATGAGTTTAGCTTTTGA+AGG | - | chr6_3:69491801-69491820 | Msa0957630:intron | 35.0% |
| ! | TTGAAGGAGTACGAATAAAG+AGG | - | chr6_3:69491817-69491836 | Msa0957630:intron | 35.0% |
| TGAACTAAGGGATTAAAGGA+GGG | + | chr6_3:69492112-69492131 | None:intergenic | 35.0% | |
| TTGAACTAAGGGATTAAAGG+AGG | + | chr6_3:69492113-69492132 | None:intergenic | 35.0% | |
| TGGTTGAACTAAGGGATTAA+AGG | + | chr6_3:69492116-69492135 | None:intergenic | 35.0% | |
| AACTCACATGGTTGAACTAA+GGG | + | chr6_3:69492124-69492143 | None:intergenic | 35.0% | |
| TAACTCACATGGTTGAACTA+AGG | + | chr6_3:69492125-69492144 | None:intergenic | 35.0% | |
| !!! | GCTTCACTTTATTTTGTAGG+TGG | + | chr6_3:69492327-69492346 | None:intergenic | 35.0% |
| ! | GTTATTGTTCAACCTTTTCC+TGG | - | chr6_3:69492445-69492464 | Msa0957630:intron | 35.0% |
| ! | TTAGACATGCTGCTTAAAGA+AGG | - | chr6_3:69492529-69492548 | Msa0957630:intron | 35.0% |
| ! | TAGACATGCTGCTTAAAGAA+GGG | - | chr6_3:69492530-69492549 | Msa0957630:intron | 35.0% |
| TGTACTTCCAACATGATAGA+AGG | - | chr6_3:69492568-69492587 | Msa0957630:intron | 35.0% | |
| GAATCTTCCTTCTATCATGT+TGG | + | chr6_3:69492578-69492597 | None:intergenic | 35.0% | |
| TGGCTAGAATTCACCTTATA+AGG | - | chr6_3:69492672-69492691 | Msa0957630:intron | 35.0% | |
| CACCTTATAAGGTGAATAAG+TGG | - | chr6_3:69492683-69492702 | Msa0957630:intron | 35.0% | |
| CCTTATAAGGTGAATAAGTG+GGG | - | chr6_3:69492685-69492704 | Msa0957630:intron | 35.0% | |
| GCATAATTAATACTCCATGG+TGG | + | chr6_3:69492783-69492802 | None:intergenic | 35.0% | |
| AAATTGTGCGATCGGTATAT+TGG | - | chr6_3:69492906-69492925 | Msa0957630:intron | 35.0% | |
| ATGAACGTGTGAAATGAGAA+AGG | + | chr6_3:69493059-69493078 | None:intergenic | 35.0% | |
| AAGCTGTAGTCTGATGATAT+GGG | - | chr6_3:69493126-69493145 | Msa0957630:intron | 35.0% | |
| ! | AGTCTGATGATATGGGTTAT+TGG | - | chr6_3:69493133-69493152 | Msa0957630:intron | 35.0% |
| ! | GTCTGATGATATGGGTTATT+GGG | - | chr6_3:69493134-69493153 | Msa0957630:intron | 35.0% |
| GGGACATTGAATGAGTATTA+AGG | - | chr6_3:69493154-69493173 | Msa0957630:intron | 35.0% | |
| CTCTTATAAATAGGATCGGA+GGG | + | chr6_3:69493204-69493223 | None:intergenic | 35.0% | |
| TCTCTTATAAATAGGATCGG+AGG | + | chr6_3:69493205-69493224 | None:intergenic | 35.0% | |
| CTCACAAGTCCTTAACAAAT+TGG | + | chr6_3:69493461-69493480 | None:intergenic | 35.0% | |
| !!! | ATCGTCTAGTTTTCAAGAGA+AGG | - | chr6_3:69493793-69493812 | Msa0957630:CDS | 35.0% |
| !!! | TCGTCTAGTTTTCAAGAGAA+GGG | - | chr6_3:69493794-69493813 | Msa0957630:CDS | 35.0% |
| CAACAGAACTCTAATAACTC+TGG | + | chr6_3:69493831-69493850 | None:intergenic | 35.0% | |
| GTTATTAGAGTTCTGTTGAG+AGG | - | chr6_3:69493833-69493852 | Msa0957630:intron | 35.0% | |
| !! | CTAGTGGCTTCGTTTTTATA+CGG | - | chr6_3:69494387-69494406 | Msa0957630:intron | 35.0% |
| TGCATAATATATACAGGGTC+TGG | + | chr6_3:69494443-69494462 | None:intergenic | 35.0% | |
| ACTTGAGCATGATATTGCTT+CGG | + | chr6_3:69494810-69494829 | None:intergenic | 35.0% | |
| !! | CTCAAGATATTGTCGATTTC+AGG | + | chr6_3:69494955-69494974 | None:intergenic | 35.0% |
| AAAAAAGATCAACGAGCTCA+TGG | + | chr6_3:69495064-69495083 | None:intergenic | 35.0% | |
| GAGCGTATACTATCTTTGTG+GGG | + | chr6_3:69490957-69490976 | None:intergenic | 40.0% | |
| ! | GAGAGCGTATACTATCTTTG+TGG | + | chr6_3:69490959-69490978 | None:intergenic | 40.0% |
| CCAAGGTTGTATTTCAATGG+TGG | + | chr6_3:69491056-69491075 | None:intergenic | 40.0% | |
| CCACCATTGAAATACAACCT+TGG | - | chr6_3:69491053-69491072 | Msa0957630:three_prime_UTR | 40.0% | |
| ACTTGTGAGTCAAATGGTGA+AGG | - | chr6_3:69491106-69491125 | Msa0957630:exon | 40.0% | |
| CTTGTGAGTCAAATGGTGAA+GGG | - | chr6_3:69491107-69491126 | Msa0957630:exon | 40.0% | |
| CTATAGGAAGAAGCGATCTA+AGG | + | chr6_3:69491261-69491280 | None:intergenic | 40.0% | |
| AATTCACATGTCTCCTAAGG+AGG | - | chr6_3:69491354-69491373 | Msa0957630:intron | 40.0% | |
| AGGGAAGGAATAAAGATCCA+GGG | + | chr6_3:69492093-69492112 | None:intergenic | 40.0% | |
| ACAAATGCCACTACTCAAGA+TGG | - | chr6_3:69492394-69492413 | Msa0957630:intron | 40.0% | |
| ! | ATTGTTCAACCTTTTCCTGG+AGG | - | chr6_3:69492448-69492467 | Msa0957630:intron | 40.0% |
| TAAGGTGAATTCTAGCCACT+AGG | + | chr6_3:69492670-69492689 | None:intergenic | 40.0% | |
| CCCCACTTATTCACCTTATA+AGG | + | chr6_3:69492688-69492707 | None:intergenic | 40.0% | |
| !! | TGCCTCAAGAGCATTCTTTA+AGG | - | chr6_3:69492858-69492877 | Msa0957630:intron | 40.0% |
| TGCGATCGGTATATTGGAAA+TGG | - | chr6_3:69492912-69492931 | Msa0957630:intron | 40.0% | |
| CAAGCTGTAGTCTGATGATA+TGG | - | chr6_3:69493125-69493144 | Msa0957630:intron | 40.0% | |
| TCTCTTATAAATAGGACCGG+AGG | - | chr6_3:69493300-69493319 | Msa0957630:intron | 40.0% | |
| CTCTTATAAATAGGACCGGA+GGG | - | chr6_3:69493301-69493320 | Msa0957630:intron | 40.0% | |
| AGGAAAACATATACTCCCTC+CGG | + | chr6_3:69493319-69493338 | None:intergenic | 40.0% | |
| ATGGCATGTCTTGTACTACA+TGG | - | chr6_3:69493368-69493387 | Msa0957630:intron | 40.0% | |
| ! | ATCAGCTTTGACAAATCCAG+TGG | + | chr6_3:69493545-69493564 | None:intergenic | 40.0% |
| AATCTGAGTTCGATTCTTGG+TGG | + | chr6_3:69493885-69493904 | None:intergenic | 40.0% | |
| GAGAATCTGAGTTCGATTCT+TGG | + | chr6_3:69493888-69493907 | None:intergenic | 40.0% | |
| ATATTCTCATGACCGTCTAG+TGG | - | chr6_3:69494081-69494100 | Msa0957630:intron | 40.0% | |
| TATTCTCATGACCGTCTAGT+GGG | - | chr6_3:69494082-69494101 | Msa0957630:intron | 40.0% | |
| ! | AAGTACAAGGGTACACTAAC+CGG | + | chr6_3:69494108-69494127 | None:intergenic | 40.0% |
| GTGAATAAGTGACGTGTTTG+AGG | - | chr6_3:69494409-69494428 | Msa0957630:intron | 40.0% | |
| !! | AGTCATTATCGGTTCCTTCA+AGG | + | chr6_3:69494753-69494772 | None:intergenic | 40.0% |
| TTGAAGGAACCGATAATGAC+TGG | - | chr6_3:69494752-69494771 | Msa0957630:intron | 40.0% | |
| AATGAGGTTTCACCACTTGT+GGG | - | chr6_3:69495223-69495242 | Msa0957630:five_prime_UTR | 40.0% | |
| ! | AGGAAGAAGCGATCTAAGGT+TGG | + | chr6_3:69491257-69491276 | None:intergenic | 45.0% |
| CTTTGACAAGATTCGAACCC+TGG | - | chr6_3:69492073-69492092 | Msa0957630:intron | 45.0% | |
| GAGGGAAGGAATAAAGATCC+AGG | + | chr6_3:69492094-69492113 | None:intergenic | 45.0% | |
| CTAAGGGATTAAAGGAGGGA+AGG | + | chr6_3:69492108-69492127 | None:intergenic | 45.0% | |
| ACTAGAGCCATCTTGAGTAG+TGG | + | chr6_3:69492404-69492423 | None:intergenic | 45.0% | |
| ATCTCAAGTCCTCCAGGAAA+AGG | + | chr6_3:69492460-69492479 | None:intergenic | 45.0% | |
| ATTATTATATGCAGGGGCCG+AGG | + | chr6_3:69492726-69492745 | None:intergenic | 45.0% | |
| TACCAACTGAGCTATGCTCA+CGG | - | chr6_3:69492755-69492774 | Msa0957630:intron | 45.0% | |
| GGCCTTAAAGAATGCTCTTG+AGG | + | chr6_3:69492863-69492882 | None:intergenic | 45.0% | |
| TGGAATCCTTCAAGAGTCTC+CGG | - | chr6_3:69492970-69492989 | Msa0957630:intron | 45.0% | |
| GCTTTGACAAATCCAGTGGA+GGG | + | chr6_3:69493541-69493560 | None:intergenic | 45.0% | |
| ! | AGCTTTGACAAATCCAGTGG+AGG | + | chr6_3:69493542-69493561 | None:intergenic | 45.0% |
| ACACTGTACTCAGAAGGGTT+TGG | - | chr6_3:69494138-69494157 | Msa0957630:intron | 45.0% | |
| CACTGTACTCAGAAGGGTTT+GGG | - | chr6_3:69494139-69494158 | Msa0957630:intron | 45.0% | |
| TGCATGTGTGGACTTGAATG+AGG | - | chr6_3:69495207-69495226 | Msa0957630:five_prime_UTR | 45.0% | |
| GAATGAGGTTTCACCACTTG+TGG | - | chr6_3:69495222-69495241 | Msa0957630:five_prime_UTR | 45.0% | |
| !! | AAAAAGATAATATATTAATA+AGG | + | chr6_3:69494270-69494289 | None:intergenic | 5.0% |
| !! | TATGTAATAAAAAAAAAAAA+AGG | + | chr6_3:69494365-69494384 | None:intergenic | 5.0% |
| !! | TCTAAGGTTGGTGCAGAGGT+TGG | + | chr6_3:69491245-69491264 | None:intergenic | 50.0% |
| GGATGGGTACGTAACTCACA+TGG | + | chr6_3:69492136-69492155 | None:intergenic | 50.0% | |
| CACACAATCTCAAGTCCTCC+AGG | + | chr6_3:69492466-69492485 | None:intergenic | 50.0% | |
| ! | AGGTGAATAAGTGGGGTGTC+TGG | - | chr6_3:69492692-69492711 | Msa0957630:intron | 50.0% |
| ! | GGTGAATAAGTGGGGTGTCT+GGG | - | chr6_3:69492693-69492712 | Msa0957630:intron | 50.0% |
| ! | GTGAATAAGTGGGGTGTCTG+GGG | - | chr6_3:69492694-69492713 | Msa0957630:intron | 50.0% |
| GTGAGCATAGCTCAGTTGGT+AGG | + | chr6_3:69492756-69492775 | None:intergenic | 50.0% | |
| ACCAACTGAGCTATGCTCAC+GGG | - | chr6_3:69492756-69492775 | Msa0957630:intron | 50.0% | |
| GGAATCCTTCAAGAGTCTCC+GGG | - | chr6_3:69492971-69492990 | Msa0957630:intron | 50.0% | |
| GAATCCTTCAAGAGTCTCCG+GGG | - | chr6_3:69492972-69492991 | Msa0957630:intron | 50.0% | |
| AATCCTTCAAGAGTCTCCGG+GGG | - | chr6_3:69492973-69492992 | Msa0957630:intron | 50.0% | |
| GTCATAATAACGAGTGCCCC+CGG | + | chr6_3:69492992-69493011 | None:intergenic | 50.0% | |
| GGGTGGCGACAGATATTTAG+TGG | + | chr6_3:69493521-69493540 | None:intergenic | 50.0% | |
| TTGACAAATCCAGTGGAGGG+TGG | + | chr6_3:69493538-69493557 | None:intergenic | 50.0% | |
| ACTCAGAAGGGTTTGGGTGT+TGG | - | chr6_3:69494145-69494164 | Msa0957630:intron | 50.0% | |
| !! | GCGATCTAAGGTTGGTGCAG+AGG | + | chr6_3:69491249-69491268 | None:intergenic | 55.0% |
| TCGTCGAAGATGCAGCCCAA+TGG | - | chr6_3:69491780-69491799 | Msa0957630:intron | 55.0% | |
| TCCCGTGAGCATAGCTCAGT+TGG | + | chr6_3:69492760-69492779 | None:intergenic | 55.0% | |
| ACACTAACCGGCCCACTAGA+CGG | + | chr6_3:69494096-69494115 | None:intergenic | 55.0% | |
| !! | CAGAAGGGTTTGGGTGTTGG+TGG | - | chr6_3:69494148-69494167 | Msa0957630:intron | 55.0% |
| !! | GGTTTGGGTGTTGGTGGTGT+GGG | - | chr6_3:69494154-69494173 | Msa0957630:intron | 55.0% |
| ! | GGTGTCTGGGGTTCGAACCT+CGG | - | chr6_3:69492706-69492725 | Msa0957630:intron | 60.0% |
| CTATGCTCACGGGACCACCA+TGG | - | chr6_3:69492766-69492785 | Msa0957630:intron | 60.0% | |
| TATCTGTCGCCACCCTCCAC+TGG | - | chr6_3:69493526-69493545 | Msa0957630:intron | 60.0% | |
| ! | CTCATGACCGTCTAGTGGGC+CGG | - | chr6_3:69494086-69494105 | Msa0957630:intron | 60.0% |
| !! | GGGTTTGGGTGTTGGTGGTG+TGG | - | chr6_3:69494153-69494172 | Msa0957630:intron | 60.0% |
| !! | TTGGGTGTTGGTGGTGTGGG+TGG | - | chr6_3:69494157-69494176 | Msa0957630:intron | 60.0% |
| !! | GTTGGTGGTGTGGGTGGCTT+AGG | - | chr6_3:69494163-69494182 | Msa0957630:intron | 60.0% |
| GTGCCCCCGGAGACTCTTGA+AGG | + | chr6_3:69492979-69492998 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 69490836 | 69495251 | 69490836 | ID=Msa0957630;Name=Msa0957630 |
| chr6_3 | mRNA | 69490836 | 69495251 | 69490836 | ID=Msa0957630-mRNA-1;Parent=Msa0957630;Name=Msa0957630-mRNA-1;_AED=0.05;_eAED=0.05;_QI=345|0.66|0.75|1|1|1|4|273|160 |
| chr6_3 | exon | 69490836 | 69491158 | 69490836 | ID=Msa0957630-mRNA-1:exon:12677;Parent=Msa0957630-mRNA-1 |
| chr6_3 | exon | 69491260 | 69491329 | 69491260 | ID=Msa0957630-mRNA-1:exon:12676;Parent=Msa0957630-mRNA-1 |
| chr6_3 | exon | 69493562 | 69493813 | 69493562 | ID=Msa0957630-mRNA-1:exon:12675;Parent=Msa0957630-mRNA-1 |
| chr6_3 | exon | 69494796 | 69495251 | 69494796 | ID=Msa0957630-mRNA-1:exon:12674;Parent=Msa0957630-mRNA-1 |
| chr6_3 | five_prime_UTR | 69494907 | 69495251 | 69494907 | ID=Msa0957630-mRNA-1:five_prime_utr;Parent=Msa0957630-mRNA-1 |
| chr6_3 | CDS | 69494796 | 69494906 | 69494796 | ID=Msa0957630-mRNA-1:cds;Parent=Msa0957630-mRNA-1 |
| chr6_3 | CDS | 69493562 | 69493813 | 69493562 | ID=Msa0957630-mRNA-1:cds;Parent=Msa0957630-mRNA-1 |
| chr6_3 | CDS | 69491260 | 69491329 | 69491260 | ID=Msa0957630-mRNA-1:cds;Parent=Msa0957630-mRNA-1 |
| chr6_3 | CDS | 69491109 | 69491158 | 69491109 | ID=Msa0957630-mRNA-1:cds;Parent=Msa0957630-mRNA-1 |
| chr6_3 | three_prime_UTR | 69490836 | 69491108 | 69490836 | ID=Msa0957630-mRNA-1:three_prime_utr;Parent=Msa0957630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
