Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0894480 | KAF7837329.1 | 75.000 | 52 | 12 | 1 | 22 | 72 | 277 | 328 | 3.13e-16 | 82.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0894480 | A0A835CC74 | 75.000 | 52 | 12 | 1 | 22 | 72 | 277 | 328 | 1.49e-16 | 82.4 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0875150 | Msa0894480 | 0.811516 | 6.732980e-51 | -8.615850e-47 |
| Msa0875160 | Msa0894480 | 0.828584 | 8.289211e-55 | -8.615850e-47 |
| Msa0894470 | Msa0894480 | 0.972037 | 4.065276e-134 | -8.615850e-47 |
| Msa0894480 | Msa1157890 | 0.822528 | 2.257238e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0894480 | MtrunA17_Chr1g0169361 | 90.476 | 42 | 3 | 1 | 32 | 72 | 311 | 352 | 1.34e-19 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0894480 | AT3G24190.1 | 85.714 | 42 | 5 | 1 | 32 | 72 | 319 | 360 | 2.98e-18 | 77.4 |
Find 51 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCCTTTCTCTCCATTGTT+AGG | 0.215554 | 6_1:-80242757 | Msa0894480:five_prime_UTR |
| GAGAGGGAATTGACGGAGTT+TGG | 0.224000 | 6_1:+80242849 | None:intergenic |
| CAATGGAGAGAAAGGGAAAA+TGG | 0.224627 | 6_1:+80242762 | None:intergenic |
| AATAATTTATATTGTATATA+TGG | 0.249228 | 6_1:-80239597 | Msa0894480:three_prime_UTR |
| AATAATAAATCACCTGATTT+AGG | 0.253705 | 6_1:+80239411 | None:intergenic |
| TGTTCTTAATATTGTGAATC+AGG | 0.290660 | 6_1:+80239691 | None:intergenic |
| GCGAGAATCGATGGTGAGTT+TGG | 0.305199 | 6_1:+80242882 | None:intergenic |
| TGGCAGCTCTTTCTTCATTT+CGG | 0.324100 | 6_1:+80240181 | None:intergenic |
| CAACAAATTTGTACTCGAAT+AGG | 0.330985 | 6_1:-80242285 | Msa0894480:CDS |
| CAGGAATTGATTACTTGTAT+AGG | 0.331274 | 6_1:+80239710 | None:intergenic |
| AGAGGGAATTGACGGAGTTT+GGG | 0.351980 | 6_1:+80242850 | None:intergenic |
| TCCCTTTCTCTCCATTGTTA+GGG | 0.369621 | 6_1:-80242756 | Msa0894480:five_prime_UTR |
| TACTTTGCGACATGTAGATC+TGG | 0.369716 | 6_1:+80242709 | None:intergenic |
| TAGGTCTCCATTGATGTGGT+TGG | 0.395649 | 6_1:-80240281 | Msa0894480:CDS |
| TCGATGGTGAGTTTGGGAAT+TGG | 0.411483 | 6_1:+80242889 | None:intergenic |
| TGTCACCTGCTACCTAAATC+AGG | 0.412254 | 6_1:-80239423 | Msa0894480:three_prime_UTR |
| TATGTGAATGAAGGTGAAAA+TGG | 0.419960 | 6_1:-80240215 | Msa0894480:CDS |
| CTCCATTGATGTGGTTGGGT+TGG | 0.420334 | 6_1:-80240276 | Msa0894480:CDS |
| CGAGAATCGATGGTGAGTTT+GGG | 0.425913 | 6_1:+80242883 | None:intergenic |
| AGGTCTCCATTGATGTGGTT+GGG | 0.427169 | 6_1:-80240280 | Msa0894480:CDS |
| TTCACAATATTAAGAACATT+AGG | 0.430074 | 6_1:-80239686 | Msa0894480:three_prime_UTR |
| AACCCTAACAATGGAGAGAA+AGG | 0.434993 | 6_1:+80242754 | None:intergenic |
| AATGGAGAGAAAGGGAAAAT+GGG | 0.441935 | 6_1:+80242763 | None:intergenic |
| GAGAGATAGGTGAAATGAGA+AGG | 0.442996 | 6_1:+80242939 | None:intergenic |
| TAGGCTGGAGTTTCAATCAA+TGG | 0.451150 | 6_1:-80239667 | Msa0894480:three_prime_UTR |
| ACATGTAGATCTGGGAAGAT+TGG | 0.451465 | 6_1:+80242718 | None:intergenic |
| AGAGATAGGTGAAATGAGAA+GGG | 0.487919 | 6_1:+80242940 | None:intergenic |
| AGCGGTGAAGCGAGCGAGAA+AGG | 0.488084 | 6_1:+80242807 | None:intergenic |
| TTTGTTGAATATATGCAGAT+AGG | 0.489247 | 6_1:+80242301 | None:intergenic |
| AACCAACCCAACCACATCAA+TGG | 0.491341 | 6_1:+80240274 | None:intergenic |
| GTGCTGGAAGACAGAGAGAT+AGG | 0.498501 | 6_1:+80242926 | None:intergenic |
| GGTTGGGTTGGTTGACGAGT+GGG | 0.507535 | 6_1:-80240264 | Msa0894480:CDS |
| CAATATTAAGAACATTAGGC+TGG | 0.524879 | 6_1:-80239682 | Msa0894480:three_prime_UTR |
| TGGTGGTGAGAGGGAATTGA+CGG | 0.529017 | 6_1:+80242842 | None:intergenic |
| AATCACCTGATTTAGGTAGC+AGG | 0.532267 | 6_1:+80239418 | None:intergenic |
| ACTTTGCGACATGTAGATCT+GGG | 0.547807 | 6_1:+80242710 | None:intergenic |
| TTATCAGGTAAAATAGGCGT+TGG | 0.548996 | 6_1:-80242327 | Msa0894480:intron |
| ACCCTAACAATGGAGAGAAA+GGG | 0.557073 | 6_1:+80242755 | None:intergenic |
| TGGTTGGGTTGGTTGACGAG+TGG | 0.563824 | 6_1:-80240265 | Msa0894480:CDS |
| AATTGACGGAGTTTGGGTGA+TGG | 0.579938 | 6_1:+80242856 | None:intergenic |
| GAGAATGAAAACCCTAACAA+TGG | 0.582262 | 6_1:+80242745 | None:intergenic |
| GTATAAGATTGTTCTGCAGA+AGG | 0.590909 | 6_1:-80242256 | Msa0894480:intron |
| ATGAATCGATGGTGGTGAGA+GGG | 0.606923 | 6_1:+80242833 | None:intergenic |
| GAGAAAGGATGATGAATCGA+TGG | 0.612943 | 6_1:+80242822 | None:intergenic |
| GATGAATCGATGGTGGTGAG+AGG | 0.614197 | 6_1:+80242832 | None:intergenic |
| AATGAAGAAAGAGCTGCCAT+AGG | 0.617243 | 6_1:-80240177 | Msa0894480:intron |
| GAGTTAGACTATGTGAATGA+AGG | 0.620549 | 6_1:-80240224 | Msa0894480:CDS |
| TGATGGTGAGCGAGAATCGA+TGG | 0.644413 | 6_1:+80242873 | None:intergenic |
| ACACTATTTACATATATACA+AGG | 0.645479 | 6_1:+80239471 | None:intergenic |
| CGAAGTGAATCAAGAAACAG+CGG | 0.692134 | 6_1:+80242789 | None:intergenic |
| AAAGGATGATGAATCGATGG+TGG | 0.734273 | 6_1:+80242825 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTATTAATATGTTACT+AGG | - | chr6_1:80239753-80239772 | Msa0894480:intron | 10.0% |
| !! | TATTTATTAATATGTTACTA+GGG | - | chr6_1:80239754-80239773 | Msa0894480:intron | 10.0% |
| !! | ACATTTATTTAAATAAACAA+AGG | + | chr6_1:80240962-80240981 | None:intergenic | 10.0% |
| !! | CTTATATAAAAATAAATTTC+TGG | - | chr6_1:80241634-80241653 | Msa0894480:intron | 10.0% |
| !! | ATATTTAATTGATTAAAATG+TGG | - | chr6_1:80241796-80241815 | Msa0894480:intron | 10.0% |
| !! | AAAAAAGAAAATTGTATATA+TGG | - | chr6_1:80242728-80242747 | Msa0894480:five_prime_UTR | 10.0% |
| !! | GTATATTTATTGAAAATAAC+AGG | - | chr6_1:80240120-80240139 | Msa0894480:intron | 15.0% |
| !!! | AAGAATCTTTTCTTATATAT+AGG | + | chr6_1:80240482-80240501 | None:intergenic | 15.0% |
| !! | CATTTAATAATTAATGTATC+TGG | - | chr6_1:80240413-80240432 | Msa0894480:intron | 15.0% |
| !!! | AAGAATCTTTTCTTATATAT+AGG | - | chr6_1:80240482-80240501 | Msa0894480:intron | 15.0% |
| !!! | ATAACTTTAAGTTTATGATA+GGG | + | chr6_1:80241871-80241890 | None:intergenic | 15.0% |
| !!! | TATAACTTTAAGTTTATGAT+AGG | + | chr6_1:80241872-80241891 | None:intergenic | 15.0% |
| !! | TAAACAATGAAAGAGAAAAA+TGG | + | chr6_1:80239677-80239696 | None:intergenic | 20.0% |
| !!! | ATTAGCTAGTTTAAGAAATA+GGG | - | chr6_1:80239705-80239724 | Msa0894480:three_prime_UTR | 20.0% |
| !! | AATAGAAAAGGAAAAATCTT+TGG | - | chr6_1:80239790-80239809 | Msa0894480:intron | 20.0% |
| !! | ATAGAAAAGGAAAAATCTTT+GGG | - | chr6_1:80239791-80239810 | Msa0894480:intron | 20.0% |
| !!! | AAAAGACACATAATATTTTG+TGG | + | chr6_1:80240083-80240102 | None:intergenic | 20.0% |
| !!! | TCTTTTCTTATATATAGGAT+CGG | + | chr6_1:80240378-80240397 | None:intergenic | 20.0% |
| !! | ACAAATAACTTAATAGAGAT+TGG | + | chr6_1:80240791-80240810 | None:intergenic | 20.0% |
| !!! | TAGAAATTGGTTTATCTTAT+TGG | + | chr6_1:80241286-80241305 | None:intergenic | 20.0% |
| !!! | TATTTTGACTAGTTAGAAAT+TGG | + | chr6_1:80241299-80241318 | None:intergenic | 20.0% |
| !!! | ACTAGTTTAGCTTATTATAA+TGG | + | chr6_1:80241492-80241511 | None:intergenic | 20.0% |
| !!! | AAAAATAAATTTCTGGAAGT+TGG | - | chr6_1:80241641-80241660 | Msa0894480:intron | 20.0% |
| !! | AAGAAAGAAAATAACATCAT+TGG | + | chr6_1:80242305-80242324 | None:intergenic | 20.0% |
| !! | ATTATAAAAGCAAAGAAACA+AGG | - | chr6_1:80242401-80242420 | Msa0894480:intron | 20.0% |
| !!! | AGGTTAAGTTTTTTCATAAT+AGG | - | chr6_1:80242421-80242440 | Msa0894480:intron | 20.0% |
| !! | ATATAAAAAGGATAACAATG+AGG | + | chr6_1:80242548-80242567 | None:intergenic | 20.0% |
| !! | TTCACAATATTAAGAACATT+AGG | - | chr6_1:80242605-80242624 | Msa0894480:intron | 20.0% |
| !! | ACACTATTTACATATATACA+AGG | + | chr6_1:80242767-80242786 | None:intergenic | 20.0% |
| !! | AATAATAAATCACCTGATTT+AGG | + | chr6_1:80242883-80242902 | None:intergenic | 20.0% |
| !! | GTTGAAATTTGAAATGATGA+AGG | + | chr6_1:80239620-80239639 | None:intergenic | 25.0% |
| !! | GATTAGCTAGTTTAAGAAAT+AGG | - | chr6_1:80239704-80239723 | Msa0894480:three_prime_UTR | 25.0% |
| ! | TTAATATGTTACTAGGGTTA+AGG | - | chr6_1:80239760-80239779 | Msa0894480:intron | 25.0% |
| ! | TAAGGAATATGGAATAGAAA+AGG | - | chr6_1:80239778-80239797 | Msa0894480:intron | 25.0% |
| !! | TTTTCAATGTTTGATGCATA+AGG | - | chr6_1:80239927-80239946 | Msa0894480:intron | 25.0% |
| ! | TTTCAATGTTTGATGCATAA+GGG | - | chr6_1:80239928-80239947 | Msa0894480:intron | 25.0% |
| !!! | GGTTTTTTATCAGGTAAAAT+AGG | - | chr6_1:80239958-80239977 | Msa0894480:intron | 25.0% |
| ! | TTTGTTGAATATATGCAGAT+AGG | + | chr6_1:80239993-80240012 | None:intergenic | 25.0% |
| ! | ATTGAAAATTGAGACAGTTA+TGG | - | chr6_1:80240194-80240213 | Msa0894480:CDS | 25.0% |
| ! | TTGAAAATTGAGACAGTTAT+GGG | - | chr6_1:80240195-80240214 | Msa0894480:CDS | 25.0% |
| !! | TCTTTTCTTATATATAGGAC+CGG | - | chr6_1:80240487-80240506 | Msa0894480:intron | 25.0% |
| ! | GTGAATAAAGACATACAAAA+TGG | - | chr6_1:80240572-80240591 | Msa0894480:intron | 25.0% |
| ! | AGTTGACAATAATGCTTAAA+AGG | - | chr6_1:80240595-80240614 | Msa0894480:intron | 25.0% |
| ! | GTTGACAATAATGCTTAAAA+GGG | - | chr6_1:80240596-80240615 | Msa0894480:intron | 25.0% |
| !!! | AATTTCCTACTTTGTTTTAG+AGG | - | chr6_1:80240848-80240867 | Msa0894480:intron | 25.0% |
| !!! | AATTGGACTGCATTTTAATA+AGG | - | chr6_1:80240934-80240953 | Msa0894480:intron | 25.0% |
| ! | ATGACAAACTATAATACACA+AGG | + | chr6_1:80240988-80241007 | None:intergenic | 25.0% |
| !! | GTATTATAGTTTGTCATATG+TGG | - | chr6_1:80240991-80241010 | Msa0894480:intron | 25.0% |
| ! | ATAAGGCTTATTCGATTTAA+TGG | + | chr6_1:80241391-80241410 | None:intergenic | 25.0% |
| ! | ATACTAGATGGTAAGTTATA+AGG | + | chr6_1:80241408-80241427 | None:intergenic | 25.0% |
| !! | ACTAGTTTAGCTTATACTAA+TGG | + | chr6_1:80241521-80241540 | None:intergenic | 25.0% |
| ! | CATAAGAAGTAAGAAATGAT+AGG | + | chr6_1:80242145-80242164 | None:intergenic | 25.0% |
| ! | TAAAGATCTAACAGTTTACA+TGG | - | chr6_1:80242176-80242195 | Msa0894480:intron | 25.0% |
| !! | AGATGATCTATTTGATTTCT+TGG | - | chr6_1:80242231-80242250 | Msa0894480:intron | 25.0% |
| !! | ATTAGGAATGTTTGAAACAT+GGG | + | chr6_1:80242258-80242277 | None:intergenic | 25.0% |
| !! | AATTAGGAATGTTTGAAACA+TGG | + | chr6_1:80242259-80242278 | None:intergenic | 25.0% |
| ! | ATGTTTCAAACATTCCTAAT+TGG | - | chr6_1:80242258-80242277 | Msa0894480:CDS | 25.0% |
| ! | TGTTTCAAACATTCCTAATT+GGG | - | chr6_1:80242259-80242278 | Msa0894480:CDS | 25.0% |
| !! | ATGATATTTGTCAAGGTTTT+TGG | - | chr6_1:80242511-80242530 | Msa0894480:intron | 25.0% |
| !! | GTTATCCTTTTTATATGTAG+AGG | - | chr6_1:80242552-80242571 | Msa0894480:intron | 25.0% |
| ! | TGTAACCTCTACATATAAAA+AGG | + | chr6_1:80242560-80242579 | None:intergenic | 25.0% |
| ! | TGTTCTTAATATTGTGAATC+AGG | + | chr6_1:80242603-80242622 | None:intergenic | 25.0% |
| !! | TTTGGGAATTGGAGTTTTAA+GGG | + | chr6_1:80239394-80239413 | None:intergenic | 30.0% |
| AAGGAAAAATCTTTGGGTAT+TGG | - | chr6_1:80239797-80239816 | Msa0894480:intron | 30.0% | |
| AAATTCAGGAAACTTCCTTA+TGG | + | chr6_1:80239850-80239869 | None:intergenic | 30.0% | |
| TCTGATGAGACAATAAATTC+AGG | + | chr6_1:80239864-80239883 | None:intergenic | 30.0% | |
| ! | TATTGTCTCATCAGAGTTTT+TGG | - | chr6_1:80239869-80239888 | Msa0894480:intron | 30.0% |
| ! | ATTGTCTCATCAGAGTTTTT+GGG | - | chr6_1:80239870-80239889 | Msa0894480:intron | 30.0% |
| TAGCTAGATTACTAGAAAAG+TGG | + | chr6_1:80239905-80239924 | None:intergenic | 30.0% | |
| TTCAATGTTTGATGCATAAG+GGG | - | chr6_1:80239929-80239948 | Msa0894480:intron | 30.0% | |
| CAACAAATTTGTACTCGAAT+AGG | - | chr6_1:80240006-80240025 | Msa0894480:intron | 30.0% | |
| AGAAAAGCTTATTGCCAAAA+TGG | - | chr6_1:80240296-80240315 | Msa0894480:intron | 30.0% | |
| TTCTTATATATAGGATCGGA+GGG | + | chr6_1:80240374-80240393 | None:intergenic | 30.0% | |
| TTTCTTATATATAGGATCGG+AGG | + | chr6_1:80240375-80240394 | None:intergenic | 30.0% | |
| !! | CATTTCCTCTAAAACAAAGT+AGG | + | chr6_1:80240856-80240875 | None:intergenic | 30.0% |
| AATGTGTAAACTATCACCAT+AGG | + | chr6_1:80240902-80240921 | None:intergenic | 30.0% | |
| ACATTTCCCTATTGTGAAAT+TGG | - | chr6_1:80240917-80240936 | Msa0894480:intron | 30.0% | |
| !!! | GGTTTGTTGTCTTGTTTTTT+AGG | - | chr6_1:80241065-80241084 | Msa0894480:intron | 30.0% |
| !!! | TTGTTGTCTTGTTTTTTAGG+TGG | - | chr6_1:80241068-80241087 | Msa0894480:intron | 30.0% |
| !!! | TCTTGTTTTTTAGGTGGTTT+TGG | - | chr6_1:80241074-80241093 | Msa0894480:intron | 30.0% |
| !!! | AGTGTTTTGTTTCAATCATG+TGG | - | chr6_1:80241214-80241233 | Msa0894480:intron | 30.0% |
| GCAACTATATCAATACTAGA+TGG | + | chr6_1:80241420-80241439 | None:intergenic | 30.0% | |
| ! | GCTTTTTACCTTACCTTTTT+AGG | - | chr6_1:80241991-80242010 | Msa0894480:intron | 30.0% |
| TATGTGAATGAAGGTGAAAA+TGG | - | chr6_1:80242076-80242095 | Msa0894480:intron | 30.0% | |
| GTTTCAAACATTCCTAATTG+GGG | - | chr6_1:80242260-80242279 | Msa0894480:CDS | 30.0% | |
| TTTCAAACATTCCTAATTGG+GGG | - | chr6_1:80242261-80242280 | Msa0894480:CDS | 30.0% | |
| AAAAAGGATAACAATGAGGA+AGG | + | chr6_1:80242544-80242563 | None:intergenic | 30.0% | |
| CAGGAATTGATTACTTGTAT+AGG | + | chr6_1:80242584-80242603 | None:intergenic | 30.0% | |
| CAATATTAAGAACATTAGGC+TGG | - | chr6_1:80242609-80242628 | Msa0894480:intron | 30.0% | |
| !!! | ATTATTTTAGTGCTTTCTGC+TGG | - | chr6_1:80242897-80242916 | Msa0894480:five_prime_UTR | 30.0% |
| ! | GCTACATCTTTTTCTAACTT+TGG | - | chr6_1:80242952-80242971 | Msa0894480:five_prime_UTR | 30.0% |
| AGAGATAGGTGAAATGAGAA+GGG | + | chr6_1:80239354-80239373 | None:intergenic | 35.0% | |
| ! | GTTTGGGAATTGGAGTTTTA+AGG | + | chr6_1:80239395-80239414 | None:intergenic | 35.0% |
| AATGGAGAGAAAGGGAAAAT+GGG | + | chr6_1:80239531-80239550 | None:intergenic | 35.0% | |
| GAGAATGAAAACCCTAACAA+TGG | + | chr6_1:80239549-80239568 | None:intergenic | 35.0% | |
| GTTACTAGGGTTAAGGAATA+TGG | - | chr6_1:80239767-80239786 | Msa0894480:intron | 35.0% | |
| !! | GAAAAATCTTTGGGTATTGG+TGG | - | chr6_1:80239800-80239819 | Msa0894480:intron | 35.0% |
| !!! | GGGATGTTTGGTTTTTTATC+AGG | - | chr6_1:80239949-80239968 | Msa0894480:intron | 35.0% |
| TTATCAGGTAAAATAGGCGT+TGG | - | chr6_1:80239964-80239983 | Msa0894480:intron | 35.0% | |
| GTATAAGATTGTTCTGCAGA+AGG | - | chr6_1:80240035-80240054 | Msa0894480:intron | 35.0% | |
| GCTTGCATAAATACATGTCT+TGG | + | chr6_1:80240335-80240354 | None:intergenic | 35.0% | |
| TTTCTTATATATAGGACCGG+AGG | - | chr6_1:80240490-80240509 | Msa0894480:intron | 35.0% | |
| TTCTTATATATAGGACCGGA+GGG | - | chr6_1:80240491-80240510 | Msa0894480:intron | 35.0% | |
| !!! | GTTAGTTTTAGTGCAGTACA+TGG | + | chr6_1:80240685-80240704 | None:intergenic | 35.0% |
| TTTAGAGGAAATGAATGCTC+AGG | - | chr6_1:80240863-80240882 | Msa0894480:intron | 35.0% | |
| TGCAGTCCAATTTCACAATA+GGG | + | chr6_1:80240926-80240945 | None:intergenic | 35.0% | |
| ATGCAGTCCAATTTCACAAT+AGG | + | chr6_1:80240927-80240946 | None:intergenic | 35.0% | |
| !!! | TTTTTTAGGTGGTTTTGGCT+GGG | - | chr6_1:80241079-80241098 | Msa0894480:intron | 35.0% |
| TTAAAACCAACACAACAGAG+AGG | + | chr6_1:80241161-80241180 | None:intergenic | 35.0% | |
| !! | TCAAGAGCATCAACTGTATT+GGG | - | chr6_1:80241182-80241201 | Msa0894480:intron | 35.0% |
| ! | TCTTTGTTATGTCATTGTGC+AGG | - | chr6_1:80241448-80241467 | Msa0894480:intron | 35.0% |
| CAAAGACGGATATTCAACTA+TGG | + | chr6_1:80241732-80241751 | None:intergenic | 35.0% | |
| CATAGTTGAATATCCGTCTT+TGG | - | chr6_1:80241730-80241749 | Msa0894480:intron | 35.0% | |
| CAGTTGTTAACAACCAAAGA+CGG | + | chr6_1:80241746-80241765 | None:intergenic | 35.0% | |
| GGTTGTTAACAACTGTCTTT+AGG | - | chr6_1:80241751-80241770 | Msa0894480:intron | 35.0% | |
| TTAACAACTGTCTTTAGGTG+AGG | - | chr6_1:80241756-80241775 | Msa0894480:intron | 35.0% | |
| !! | AGGTAAGGTAAAAAGCACTT+GGG | + | chr6_1:80241987-80242006 | None:intergenic | 35.0% |
| !! | AAGGTAAGGTAAAAAGCACT+TGG | + | chr6_1:80241988-80242007 | None:intergenic | 35.0% |
| AATGGAGACCTAAAAAGGTA+AGG | + | chr6_1:80242002-80242021 | None:intergenic | 35.0% | |
| ACATCAATGGAGACCTAAAA+AGG | + | chr6_1:80242007-80242026 | None:intergenic | 35.0% | |
| !!! | TTTTTAGGTCTCCATTGATG+TGG | - | chr6_1:80242006-80242025 | Msa0894480:intron | 35.0% |
| GAGTTAGACTATGTGAATGA+AGG | - | chr6_1:80242067-80242086 | Msa0894480:intron | 35.0% | |
| ATATCTTATCAGTTGAGAGC+AGG | + | chr6_1:80242202-80242221 | None:intergenic | 35.0% | |
| !! | AGGATCACATTGCTTTTATG+AGG | - | chr6_1:80242441-80242460 | Msa0894480:intron | 35.0% |
| !! | GGATCACATTGCTTTTATGA+GGG | - | chr6_1:80242442-80242461 | Msa0894480:intron | 35.0% |
| GTACATGCAAACAGATCATT+GGG | + | chr6_1:80242485-80242504 | None:intergenic | 35.0% | |
| CCTTGACAAATATCATCAAC+AGG | + | chr6_1:80242507-80242526 | None:intergenic | 35.0% | |
| !! | CCTGTTGATGATATTTGTCA+AGG | - | chr6_1:80242504-80242523 | Msa0894480:intron | 35.0% |
| GAGAGATAGGTGAAATGAGA+AGG | + | chr6_1:80239355-80239374 | None:intergenic | 40.0% | |
| AAAGGATGATGAATCGATGG+TGG | + | chr6_1:80239469-80239488 | None:intergenic | 40.0% | |
| GAGAAAGGATGATGAATCGA+TGG | + | chr6_1:80239472-80239491 | None:intergenic | 40.0% | |
| CGAAGTGAATCAAGAAACAG+CGG | + | chr6_1:80239505-80239524 | None:intergenic | 40.0% | |
| CAATGGAGAGAAAGGGAAAA+TGG | + | chr6_1:80239532-80239551 | None:intergenic | 40.0% | |
| TTCCCTTTCTCTCCATTGTT+AGG | - | chr6_1:80239534-80239553 | Msa0894480:three_prime_UTR | 40.0% | |
| TCCCTTTCTCTCCATTGTTA+GGG | - | chr6_1:80239535-80239554 | Msa0894480:three_prime_UTR | 40.0% | |
| ACCCTAACAATGGAGAGAAA+GGG | + | chr6_1:80239539-80239558 | None:intergenic | 40.0% | |
| AACCCTAACAATGGAGAGAA+AGG | + | chr6_1:80239540-80239559 | None:intergenic | 40.0% | |
| ACATGTAGATCTGGGAAGAT+TGG | + | chr6_1:80239576-80239595 | None:intergenic | 40.0% | |
| ACTTTGCGACATGTAGATCT+GGG | + | chr6_1:80239584-80239603 | None:intergenic | 40.0% | |
| TACTTTGCGACATGTAGATC+TGG | + | chr6_1:80239585-80239604 | None:intergenic | 40.0% | |
| AACTTCCTTATGGTAGTACC+AGG | + | chr6_1:80239840-80239859 | None:intergenic | 40.0% | |
| TTGATGCATAAGGGGATGTT+TGG | - | chr6_1:80239937-80239956 | Msa0894480:intron | 40.0% | |
| ! | GCACATTGTCAACACCATTT+TGG | + | chr6_1:80240313-80240332 | None:intergenic | 40.0% |
| TCAATCTTTAGTACTCCCTC+CGG | + | chr6_1:80240509-80240528 | None:intergenic | 40.0% | |
| ! | TTTTAGTGCAGTACATGGTG+TGG | + | chr6_1:80240680-80240699 | None:intergenic | 40.0% |
| ! | ATGAATGCTCAGGTAGCTTT+TGG | - | chr6_1:80240873-80240892 | Msa0894480:intron | 40.0% |
| !!! | AAGGGGTCTGTTTTTGCTTT+TGG | - | chr6_1:80241036-80241055 | Msa0894480:intron | 40.0% |
| !!! | AGGGGTCTGTTTTTGCTTTT+GGG | - | chr6_1:80241037-80241056 | Msa0894480:intron | 40.0% |
| !!! | GTTTTTTAGGTGGTTTTGGC+TGG | - | chr6_1:80241078-80241097 | Msa0894480:intron | 40.0% |
| !! | TCCTGCCTTGTTCTTTGTTT+TGG | - | chr6_1:80241112-80241131 | Msa0894480:intron | 40.0% |
| CCTAGCCAAAACAAAGAACA+AGG | + | chr6_1:80241120-80241139 | None:intergenic | 40.0% | |
| !!! | CCTTGTTCTTTGTTTTGGCT+AGG | - | chr6_1:80241117-80241136 | Msa0894480:intron | 40.0% |
| !! | GTCAAGAGCATCAACTGTAT+TGG | - | chr6_1:80241181-80241200 | Msa0894480:intron | 40.0% |
| TCATTGTGCAGGAGTGATAA+TGG | - | chr6_1:80241459-80241478 | Msa0894480:intron | 40.0% | |
| TGGCAGCTCTTTCTTCATTT+CGG | + | chr6_1:80242113-80242132 | None:intergenic | 40.0% | |
| AATGAAGAAAGAGCTGCCAT+AGG | - | chr6_1:80242114-80242133 | Msa0894480:intron | 40.0% | |
| GAAATGATAGGACTCACCTA+TGG | + | chr6_1:80242133-80242152 | None:intergenic | 40.0% | |
| AAACATTCCTAATTGGGGGT+TGG | - | chr6_1:80242265-80242284 | Msa0894480:CDS | 40.0% | |
| AACATTCCTAATTGGGGGTT+GGG | - | chr6_1:80242266-80242285 | Msa0894480:CDS | 40.0% | |
| GGTACATGCAAACAGATCAT+TGG | + | chr6_1:80242486-80242505 | None:intergenic | 40.0% | |
| TAGGCTGGAGTTTCAATCAA+TGG | - | chr6_1:80242624-80242643 | Msa0894480:intron | 40.0% | |
| AATCACCTGATTTAGGTAGC+AGG | + | chr6_1:80242876-80242895 | None:intergenic | 40.0% | |
| !!! | GGAGTTTTAAGGGTTTGTGC+TGG | + | chr6_1:80239384-80239403 | None:intergenic | 45.0% |
| TCGATGGTGAGTTTGGGAAT+TGG | + | chr6_1:80239405-80239424 | None:intergenic | 45.0% | |
| CGAGAATCGATGGTGAGTTT+GGG | + | chr6_1:80239411-80239430 | None:intergenic | 45.0% | |
| AATTGACGGAGTTTGGGTGA+TGG | + | chr6_1:80239438-80239457 | None:intergenic | 45.0% | |
| AGAGGGAATTGACGGAGTTT+GGG | + | chr6_1:80239444-80239463 | None:intergenic | 45.0% | |
| ! | ATGAATCGATGGTGGTGAGA+GGG | + | chr6_1:80239461-80239480 | None:intergenic | 45.0% |
| !!! | AGGTAGCTTTTGGAGTCCTA+TGG | - | chr6_1:80240883-80240902 | Msa0894480:intron | 45.0% |
| TTCCATATGTCTGTGCAGCA+AGG | - | chr6_1:80241017-80241036 | Msa0894480:intron | 45.0% | |
| TCCATATGTCTGTGCAGCAA+GGG | - | chr6_1:80241018-80241037 | Msa0894480:intron | 45.0% | |
| !!! | GGGGTCTGTTTTTGCTTTTG+GGG | - | chr6_1:80241038-80241057 | Msa0894480:intron | 45.0% |
| !! | TGTTTTTGCTTTTGGGGAGC+TGG | - | chr6_1:80241044-80241063 | Msa0894480:intron | 45.0% |
| GCCAAAACAAAGAACAAGGC+AGG | + | chr6_1:80241116-80241135 | None:intergenic | 45.0% | |
| !!! | TTGTTTTGGCTAGGTTGCCT+AGG | - | chr6_1:80241126-80241145 | Msa0894480:intron | 45.0% |
| TGTCAAGTGAGATTTCAGCC+TGG | - | chr6_1:80241665-80241684 | Msa0894480:intron | 45.0% | |
| TGAGATTTCAGCCTGGATCT+GGG | - | chr6_1:80241672-80241691 | Msa0894480:intron | 45.0% | |
| TAGGTCTCCATTGATGTGGT+TGG | - | chr6_1:80242010-80242029 | Msa0894480:intron | 45.0% | |
| AGGTCTCCATTGATGTGGTT+GGG | - | chr6_1:80242011-80242030 | Msa0894480:intron | 45.0% | |
| AACCAACCCAACCACATCAA+TGG | + | chr6_1:80242020-80242039 | None:intergenic | 45.0% | |
| !!! | GTGGGCTGCTAGATTTTTTG+AGG | - | chr6_1:80242045-80242064 | Msa0894480:intron | 45.0% |
| TGTCACCTGCTACCTAAATC+AGG | - | chr6_1:80242868-80242887 | Msa0894480:five_prime_UTR | 45.0% | |
| !! | ATATGTTTATTTAATTAATA+TGG | - | chr6_1:80241891-80241910 | Msa0894480:intron | 5.0% |
| !! | AATAATTTATATTGTATATA+TGG | - | chr6_1:80242694-80242713 | Msa0894480:intron | 5.0% |
| GTGCTGGAAGACAGAGAGAT+AGG | + | chr6_1:80239368-80239387 | None:intergenic | 50.0% | |
| GCGAGAATCGATGGTGAGTT+TGG | + | chr6_1:80239412-80239431 | None:intergenic | 50.0% | |
| ! | TGATGGTGAGCGAGAATCGA+TGG | + | chr6_1:80239421-80239440 | None:intergenic | 50.0% |
| GAGAGGGAATTGACGGAGTT+TGG | + | chr6_1:80239445-80239464 | None:intergenic | 50.0% | |
| ! | TGGTGGTGAGAGGGAATTGA+CGG | + | chr6_1:80239452-80239471 | None:intergenic | 50.0% |
| ! | GATGAATCGATGGTGGTGAG+AGG | + | chr6_1:80239462-80239481 | None:intergenic | 50.0% |
| !! | TCTTTGGGTATTGGTGGACC+TGG | - | chr6_1:80239806-80239825 | Msa0894480:intron | 50.0% |
| CTTATGGTAGTACCAGGTCC+AGG | + | chr6_1:80239834-80239853 | None:intergenic | 50.0% | |
| CTGGACCTGGTACTACCATA+AGG | - | chr6_1:80239832-80239851 | Msa0894480:intron | 50.0% | |
| CCATATGTCTGTGCAGCAAG+GGG | - | chr6_1:80241019-80241038 | Msa0894480:intron | 50.0% | |
| ! | CAACACAACAGAGAGGCACA+AGG | + | chr6_1:80241154-80241173 | None:intergenic | 50.0% |
| CTTGTGCCTCTCTGTTGTGT+TGG | - | chr6_1:80241152-80241171 | Msa0894480:intron | 50.0% | |
| GTGAGATTTCAGCCTGGATC+TGG | - | chr6_1:80241671-80241690 | Msa0894480:intron | 50.0% | |
| ! | GCCTGGATCTGGGAAGATTT+TGG | - | chr6_1:80241682-80241701 | Msa0894480:intron | 50.0% |
| GCCAAAATCTTCCCAGATCC+AGG | + | chr6_1:80241686-80241705 | None:intergenic | 50.0% | |
| CTCCATTGATGTGGTTGGGT+TGG | - | chr6_1:80242015-80242034 | Msa0894480:intron | 50.0% | |
| TTAGCACCCAACCCCCAATT+AGG | + | chr6_1:80242275-80242294 | None:intergenic | 50.0% | |
| ! | GTATTGGTGGACCTGGATCC+TGG | - | chr6_1:80239813-80239832 | Msa0894480:intron | 55.0% |
| TAGTACCAGGTCCAGGATCC+AGG | + | chr6_1:80239827-80239846 | None:intergenic | 55.0% | |
| CCCCTTGCTGCACAGACATA+TGG | + | chr6_1:80241022-80241041 | None:intergenic | 55.0% | |
| !! | TGGTTGGGTTGGTTGACGAG+TGG | - | chr6_1:80242026-80242045 | Msa0894480:intron | 55.0% |
| !! | GGTTGGGTTGGTTGACGAGT+GGG | - | chr6_1:80242027-80242046 | Msa0894480:intron | 55.0% |
| AGCGGTGAAGCGAGCGAGAA+AGG | + | chr6_1:80239487-80239506 | None:intergenic | 60.0% | |
| ! | CAGAGAGGCACAAGGCACCT+AGG | + | chr6_1:80241146-80241165 | None:intergenic | 60.0% |
| GTGGACCTGGATCCTGGACC+TGG | - | chr6_1:80239819-80239838 | Msa0894480:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 80239338 | 80242975 | 80239338 | ID=Msa0894480;Name=Msa0894480 |
| chr6_1 | mRNA | 80239338 | 80242975 | 80239338 | ID=Msa0894480-mRNA-1;Parent=Msa0894480;Name=Msa0894480-mRNA-1;_AED=0.21;_eAED=0.21;_QI=254|1|1|1|0|0.5|4|404|72 |
| chr6_1 | exon | 80239338 | 80239741 | 80239338 | ID=Msa0894480-mRNA-1:exon:13465;Parent=Msa0894480-mRNA-1 |
| chr6_1 | exon | 80240178 | 80240300 | 80240178 | ID=Msa0894480-mRNA-1:exon:13464;Parent=Msa0894480-mRNA-1 |
| chr6_1 | exon | 80242257 | 80242342 | 80242257 | ID=Msa0894480-mRNA-1:exon:13463;Parent=Msa0894480-mRNA-1 |
| chr6_1 | exon | 80242712 | 80242975 | 80242712 | ID=Msa0894480-mRNA-1:exon:13462;Parent=Msa0894480-mRNA-1 |
| chr6_1 | five_prime_UTR | 80242722 | 80242975 | 80242722 | ID=Msa0894480-mRNA-1:five_prime_utr;Parent=Msa0894480-mRNA-1 |
| chr6_1 | CDS | 80242712 | 80242721 | 80242712 | ID=Msa0894480-mRNA-1:cds;Parent=Msa0894480-mRNA-1 |
| chr6_1 | CDS | 80242257 | 80242342 | 80242257 | ID=Msa0894480-mRNA-1:cds;Parent=Msa0894480-mRNA-1 |
| chr6_1 | CDS | 80240178 | 80240300 | 80240178 | ID=Msa0894480-mRNA-1:cds;Parent=Msa0894480-mRNA-1 |
| chr6_1 | three_prime_UTR | 80239338 | 80239741 | 80239338 | ID=Msa0894480-mRNA-1:three_prime_utr;Parent=Msa0894480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
