Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895350 | XP_003619876.2 | 94.578 | 166 | 8 | 1 | 1 | 166 | 22 | 186 | 7.03e-102 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895350 | sp|Q9FP29|KNOS1_ORYSJ | 32.479 | 117 | 70 | 3 | 44 | 155 | 41 | 153 | 1.26e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895350 | A0A396HKB7 | 94.578 | 166 | 8 | 1 | 1 | 166 | 22 | 186 | 3.36e-102 | 300 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0895350 | Msa0960800 | 0.931097 | 6.239458e-94 | -8.615850e-47 |
| Msa0895350 | Msa0964040 | 0.937261 | 4.618393e-98 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895350 | MtrunA17_Chr6g0479181 | 94.578 | 166 | 8 | 1 | 1 | 166 | 22 | 186 | 6.47e-106 | 300 |
| Msa0895350 | MtrunA17_Chr1g0192791 | 34.146 | 123 | 73 | 2 | 43 | 157 | 16 | 138 | 9.70e-14 | 67.0 |
| Msa0895350 | MtrunA17_Chr5g0413201 | 32.174 | 115 | 70 | 3 | 45 | 152 | 71 | 184 | 1.90e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0895350 | AT1G14760.2 | 41.905 | 105 | 54 | 2 | 45 | 142 | 32 | 136 | 6.30e-19 | 78.6 |
| Msa0895350 | AT1G70510.1 | 34.711 | 121 | 62 | 4 | 45 | 157 | 68 | 179 | 9.72e-13 | 65.1 |
| Msa0895350 | AT4G08150.1 | 37.143 | 105 | 59 | 2 | 44 | 141 | 132 | 236 | 1.13e-12 | 65.1 |
| Msa0895350 | AT1G23380.1 | 33.884 | 121 | 71 | 4 | 45 | 157 | 84 | 203 | 1.98e-11 | 61.2 |
Find 33 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATTAATTAACCTATCTT+AGG | 0.220258 | 6_1:-83107977 | None:intergenic |
| TAAGATAGGTTAATTAATTA+AGG | 0.224825 | 6_1:+83107979 | Msa0895350:three_prime_UTR |
| GTTATCTTATGTGACATTAA+TGG | 0.226329 | 6_1:+83108041 | Msa0895350:three_prime_UTR |
| GACACTGAAGAAACAAAATT+TGG | 0.269902 | 6_1:+83105318 | Msa0895350:CDS |
| GAAGAAATCCAACAATTTAG+AGG | 0.285678 | 6_1:+83107912 | Msa0895350:CDS |
| TTATCTTATGTGACATTAAT+GGG | 0.310800 | 6_1:+83108042 | Msa0895350:three_prime_UTR |
| AGAAGAAGATCAACAAGAAT+TGG | 0.342867 | 6_1:+83104041 | Msa0895350:CDS |
| GTCATCAACCTCTAAATTGT+TGG | 0.364877 | 6_1:-83107920 | None:intergenic |
| ATCTGAGCTTGATCTCTTCA+TGG | 0.388306 | 6_1:+83105354 | Msa0895350:CDS |
| TATGCAGGAAGCATATTGTT+TGG | 0.414299 | 6_1:+83107733 | Msa0895350:intron |
| GGTTGGAGACATTTCTAACT+TGG | 0.415512 | 6_1:+83105270 | Msa0895350:intron |
| ACAACATGCATTCACAACTT+AGG | 0.418339 | 6_1:+83107816 | Msa0895350:CDS |
| AGCCCACTTGGATTGTTTGA+AGG | 0.420807 | 6_1:+83104173 | Msa0895350:CDS |
| CAACATGCATTCACAACTTA+GGG | 0.435046 | 6_1:+83107817 | Msa0895350:CDS |
| ACTTCTTGTTCAAGCCCACT+TGG | 0.469162 | 6_1:+83104161 | Msa0895350:CDS |
| TAATATTGTACTATATGATA+AGG | 0.478258 | 6_1:-83103867 | None:intergenic |
| TAAGCTAAAAGAAGCAATCA+AGG | 0.493094 | 6_1:+83107763 | Msa0895350:CDS |
| CTTGAAGATGTAGTAGCAGC+TGG | 0.513712 | 6_1:-83107875 | None:intergenic |
| TGAAGAGATCAAGCTCAGAT+TGG | 0.530302 | 6_1:-83105351 | None:intergenic |
| CAAGAAGTTCATAGAGAGGA+TGG | 0.543531 | 6_1:-83104146 | None:intergenic |
| TGCATGTAGTATCCTAAGAT+AGG | 0.554102 | 6_1:+83107965 | Msa0895350:three_prime_UTR |
| TTGTAGATGTGGTATATCAA+AGG | 0.560135 | 6_1:+83103939 | Msa0895350:five_prime_UTR |
| CATGTTGTTTATGAAAGCCA+TGG | 0.572966 | 6_1:-83107801 | None:intergenic |
| TTGGAATTAGAACATAAAGA+AGG | 0.573365 | 6_1:+83104060 | Msa0895350:CDS |
| GGAACCACAACAGAATTCCA+TGG | 0.612944 | 6_1:+83107784 | Msa0895350:CDS |
| GAATTAGAACATAAAGAAGG+TGG | 0.622015 | 6_1:+83104063 | Msa0895350:CDS |
| TCATGAACATGATCATCAAG+AGG | 0.622168 | 6_1:+83104089 | Msa0895350:CDS |
| TATGAGCAGTGTTGTAGATG+TGG | 0.638858 | 6_1:+83103928 | Msa0895350:five_prime_UTR |
| GACCTTCAAACAATCCAAGT+GGG | 0.643445 | 6_1:-83104175 | None:intergenic |
| ATAAGATAACATTTCAAACA+TGG | 0.644980 | 6_1:-83108028 | None:intergenic |
| AAAGCCATGGAATTCTGTTG+TGG | 0.656432 | 6_1:-83107788 | None:intergenic |
| TGAACAAGAAGTTCATAGAG+AGG | 0.660504 | 6_1:-83104150 | None:intergenic |
| AGACCTTCAAACAATCCAAG+TGG | 0.670849 | 6_1:-83104176 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATTTTTATTTTTT+TGG | - | chr6_1:83107439-83107458 | None:intergenic | 0.0% |
| !! | AAAATAAAAATAAAAAAAAA+TGG | + | chr6_1:83107441-83107460 | Msa0895350:intron | 0.0% |
| !!! | ATTTTATATCATTCAATTAT+AGG | - | chr6_1:83104354-83104373 | None:intergenic | 10.0% |
| !! | AATGATATAAAATCAAATTA+AGG | + | chr6_1:83104361-83104380 | Msa0895350:intron | 10.0% |
| !!! | ATAAAAGTTGTAATTTTTTT+AGG | + | chr6_1:83104733-83104752 | Msa0895350:intron | 10.0% |
| !!! | TAAAAGTTGTAATTTTTTTA+GGG | + | chr6_1:83104734-83104753 | Msa0895350:intron | 10.0% |
| !!! | TTAAATCTTTTTTTTTTGAA+TGG | - | chr6_1:83104854-83104873 | None:intergenic | 10.0% |
| !! | CTAGTTTATAAAAAATTATT+TGG | - | chr6_1:83106241-83106260 | None:intergenic | 10.0% |
| !!! | CAAATAATTTTTTATAAACT+AGG | + | chr6_1:83106239-83106258 | Msa0895350:intron | 10.0% |
| !! | AAAGTAAATGTTAATATAAT+TGG | - | chr6_1:83106273-83106292 | None:intergenic | 10.0% |
| !!! | TATGTTTAAAATTTTCTAAA+AGG | + | chr6_1:83106388-83106407 | Msa0895350:intron | 10.0% |
| !!! | TAATTTTTTTTCTTGTTTTT+AGG | - | chr6_1:83106951-83106970 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTGAAAGAAAAAA+AGG | - | chr6_1:83107029-83107048 | None:intergenic | 10.0% |
| !!! | TTTAAAACTACTATTTTTAT+AGG | - | chr6_1:83107263-83107282 | None:intergenic | 10.0% |
| !! | TAATATTGTACTATATGATA+AGG | - | chr6_1:83103870-83103889 | None:intergenic | 15.0% |
| !! | ATAACAAAAAGATTATACTT+TGG | + | chr6_1:83104618-83104637 | Msa0895350:intron | 15.0% |
| !! | AAGTCTAAATATATACAATT+TGG | + | chr6_1:83104685-83104704 | Msa0895350:intron | 15.0% |
| !! | GTTAATTCATAAAATTAAAG+AGG | - | chr6_1:83104877-83104896 | None:intergenic | 15.0% |
| !! | TTATTTATATATCTTTGTGA+TGG | + | chr6_1:83105451-83105470 | Msa0895350:intron | 15.0% |
| !!! | TTAACATTTACTTTTTTGAA+TGG | + | chr6_1:83106279-83106298 | Msa0895350:intron | 15.0% |
| !!! | TTTTTAAATTAGTTTCTAGT+TGG | + | chr6_1:83106350-83106369 | Msa0895350:intron | 15.0% |
| !!! | TTTTAAATTAGTTTCTAGTT+GGG | + | chr6_1:83106351-83106370 | Msa0895350:intron | 15.0% |
| !!! | AAAAAAGGTCTTTTATTTTA+CGG | - | chr6_1:83107014-83107033 | None:intergenic | 15.0% |
| !!! | GATAAAACTGTTTTATTTAT+AGG | - | chr6_1:83107103-83107122 | None:intergenic | 15.0% |
| !! | TTAATTAATTAACCTATCTT+AGG | - | chr6_1:83107980-83107999 | None:intergenic | 15.0% |
| !! | TAAGATAGGTTAATTAATTA+AGG | + | chr6_1:83107979-83107998 | Msa0895350:three_prime_UTR | 15.0% |
| !! | TCTACTCAAAAATAGTTATA+TGG | + | chr6_1:83103972-83103991 | Msa0895350:exon | 20.0% |
| !! | TATAAAATCAAATTAAGGTG+TGG | + | chr6_1:83104366-83104385 | Msa0895350:intron | 20.0% |
| !!! | TTCAAATTAACTAACTTGTT+AGG | + | chr6_1:83104389-83104408 | Msa0895350:intron | 20.0% |
| !!! | AAGCATAAAAATTAACCTTT+TGG | + | chr6_1:83105038-83105057 | Msa0895350:intron | 20.0% |
| !!! | GAGCTCTTTATTTATTTTTA+AGG | - | chr6_1:83105154-83105173 | None:intergenic | 20.0% |
| !! | TGAATAAATTATAAGACTTG+TGG | - | chr6_1:83105195-83105214 | None:intergenic | 20.0% |
| !! | AAAAACATTCATTCATTCAT+TGG | - | chr6_1:83105421-83105440 | None:intergenic | 20.0% |
| !!! | AAATTAAATCCATTGATTGA+TGG | + | chr6_1:83105536-83105555 | Msa0895350:intron | 20.0% |
| !!! | ATAAATCTTTTTTGAAGATG+AGG | - | chr6_1:83106152-83106171 | None:intergenic | 20.0% |
| !! | TTTCAATCAATATCAATACA+TGG | + | chr6_1:83106315-83106334 | Msa0895350:intron | 20.0% |
| !! | TTAATATATCAGAATCTTTG+TGG | + | chr6_1:83106432-83106451 | Msa0895350:intron | 20.0% |
| !! | GATGTTATAGAACTTTAAAT+AGG | + | chr6_1:83106582-83106601 | Msa0895350:intron | 20.0% |
| !!! | TACTTTAAATTGCACATTTT+AGG | + | chr6_1:83106614-83106633 | Msa0895350:intron | 20.0% |
| !! | CATGAGAAAAATACTAATAT+TGG | - | chr6_1:83107235-83107254 | None:intergenic | 20.0% |
| !! | TATCTGTATAGAAAATTGAT+TGG | + | chr6_1:83107295-83107314 | Msa0895350:intron | 20.0% |
| !! | ATGTTGAATCATAAAAATGT+TGG | + | chr6_1:83107332-83107351 | Msa0895350:intron | 20.0% |
| !! | AATGTACATGTACAATTATA+TGG | + | chr6_1:83107397-83107416 | Msa0895350:intron | 20.0% |
| !!! | ACAATGAAATATGTTTTACA+CGG | + | chr6_1:83107524-83107543 | Msa0895350:intron | 20.0% |
| !!! | ACATTTTAATGATCAATTGA+GGG | - | chr6_1:83107601-83107620 | None:intergenic | 20.0% |
| !!! | AACATTTTAATGATCAATTG+AGG | - | chr6_1:83107602-83107621 | None:intergenic | 20.0% |
| !! | TCAATTGATCATTAAAATGT+TGG | + | chr6_1:83107601-83107620 | Msa0895350:intron | 20.0% |
| !! | ATAAGATAACATTTCAAACA+TGG | - | chr6_1:83108031-83108050 | None:intergenic | 20.0% |
| !! | TTATCTTATGTGACATTAAT+GGG | + | chr6_1:83108042-83108061 | Msa0895350:three_prime_UTR | 20.0% |
| ! | TTGGAATTAGAACATAAAGA+AGG | + | chr6_1:83104060-83104079 | Msa0895350:CDS | 25.0% |
| !! | TTTTAACATCTATCAATTGG+AGG | - | chr6_1:83104467-83104486 | None:intergenic | 25.0% |
| !! | CACTTTTAACATCTATCAAT+TGG | - | chr6_1:83104470-83104489 | None:intergenic | 25.0% |
| !!! | CTTTATTTTTCCATAAGAGA+AGG | - | chr6_1:83104527-83104546 | None:intergenic | 25.0% |
| ! | TATGATCAGATCACTATATT+TGG | - | chr6_1:83104659-83104678 | None:intergenic | 25.0% |
| !!! | TTTTTTTTGAATGGCTAAAG+AGG | - | chr6_1:83104845-83104864 | None:intergenic | 25.0% |
| ! | TGAATTGTTAAACAAACTCT+TGG | - | chr6_1:83104969-83104988 | None:intergenic | 25.0% |
| !!! | TAATACAAGAGCTCATTTTT+TGG | + | chr6_1:83105097-83105116 | Msa0895350:intron | 25.0% |
| !! | TCTCTATATGTCATGTTTTT+AGG | + | chr6_1:83105249-83105268 | Msa0895350:intron | 25.0% |
| !!! | TATATGTCATGTTTTTAGGT+TGG | + | chr6_1:83105253-83105272 | Msa0895350:intron | 25.0% |
| ! | TCAAAAAGAGAGAGAAAAAA+TGG | - | chr6_1:83105390-83105409 | None:intergenic | 25.0% |
| ! | TAGAAAAAATGTCACAATCA+AGG | - | chr6_1:83105655-83105674 | None:intergenic | 25.0% |
| !! | TGTCTTTTCACATTTACTTT+AGG | + | chr6_1:83105720-83105739 | Msa0895350:intron | 25.0% |
| ! | AATAATTGAGCTTAATCATG+TGG | - | chr6_1:83106013-83106032 | None:intergenic | 25.0% |
| !! | AAGGATTTTCTTGAATGATT+TGG | - | chr6_1:83106057-83106076 | None:intergenic | 25.0% |
| ! | TGATAAATATAAACTGACCA+AGG | - | chr6_1:83106103-83106122 | None:intergenic | 25.0% |
| !!! | TTATTTTATCTGAAACCCTT+CGG | - | chr6_1:83106198-83106217 | None:intergenic | 25.0% |
| !!! | ACACTTTTCTGAAAATCTAA+AGG | - | chr6_1:83106485-83106504 | None:intergenic | 25.0% |
| ! | ATTCTTAAAGAGAATGTTTC+AGG | - | chr6_1:83106515-83106534 | None:intergenic | 25.0% |
| ! | ATCATAAAAGTTGTTGTGAT+GGG | - | chr6_1:83106652-83106671 | None:intergenic | 25.0% |
| ! | AATCATAAAAGTTGTTGTGA+TGG | - | chr6_1:83106653-83106672 | None:intergenic | 25.0% |
| ! | TCTCATCATACTAATATTAG+AGG | + | chr6_1:83106738-83106757 | Msa0895350:intron | 25.0% |
| !! | TACAAATGATGATGTATGAT+TGG | + | chr6_1:83107498-83107517 | Msa0895350:intron | 25.0% |
| ! | TTTATTCAACCAATATATGC+AGG | + | chr6_1:83107718-83107737 | Msa0895350:intron | 25.0% |
| ! | GTTATCTTATGTGACATTAA+TGG | + | chr6_1:83108041-83108060 | Msa0895350:three_prime_UTR | 25.0% |
| TTGTAGATGTGGTATATCAA+AGG | + | chr6_1:83103939-83103958 | Msa0895350:five_prime_UTR | 30.0% | |
| AGAAGAAGATCAACAAGAAT+TGG | + | chr6_1:83104041-83104060 | Msa0895350:CDS | 30.0% | |
| GAATTAGAACATAAAGAAGG+TGG | + | chr6_1:83104063-83104082 | Msa0895350:CDS | 30.0% | |
| ! | GTTTTCTTTTCCTTCTCTTA+TGG | + | chr6_1:83104514-83104533 | Msa0895350:intron | 30.0% |
| TGATTGCTCTTTGAACAAAT+TGG | - | chr6_1:83104787-83104806 | None:intergenic | 30.0% | |
| GACACTGAAGAAACAAAATT+TGG | + | chr6_1:83105318-83105337 | Msa0895350:CDS | 30.0% | |
| CATGAAAGATGACACAATAT+AGG | + | chr6_1:83105513-83105532 | Msa0895350:intron | 30.0% | |
| ! | ATGAAGTATCCATCAATCAA+TGG | - | chr6_1:83105548-83105567 | None:intergenic | 30.0% |
| ! | ATTGATTGATGGATACTTCA+TGG | + | chr6_1:83105547-83105566 | Msa0895350:intron | 30.0% |
| !!! | TACTTCATGGTTTTGGTTAA+AGG | + | chr6_1:83105560-83105579 | Msa0895350:intron | 30.0% |
| GTAGAGTCTCATTCAATATT+AGG | - | chr6_1:83105597-83105616 | None:intergenic | 30.0% | |
| AAATGTCACAATCAAGGAAT+TGG | - | chr6_1:83105649-83105668 | None:intergenic | 30.0% | |
| TCGATTCTATGGTATCAATT+TGG | - | chr6_1:83105944-83105963 | None:intergenic | 30.0% | |
| TATTAACCAAGACTTGATCA+AGG | - | chr6_1:83106076-83106095 | None:intergenic | 30.0% | |
| GTCTTGGTTAATATAATCCT+TGG | + | chr6_1:83106083-83106102 | Msa0895350:intron | 30.0% | |
| AGCTCCAAAACTTTGTAATA+TGG | + | chr6_1:83106696-83106715 | Msa0895350:intron | 30.0% | |
| ! | CTTGCCATATTACAAAGTTT+TGG | - | chr6_1:83106703-83106722 | None:intergenic | 30.0% |
| ! | GATTGGTTCAATTCATAACA+TGG | - | chr6_1:83106980-83106999 | None:intergenic | 30.0% |
| ! | TTACGGTCGAAATTTTTGAT+TGG | - | chr6_1:83106997-83107016 | None:intergenic | 30.0% |
| ATTCACTCAGTCAATCATAA+TGG | - | chr6_1:83107161-83107180 | None:intergenic | 30.0% | |
| AATATGCTTCCTGCATATAT+TGG | - | chr6_1:83107730-83107749 | None:intergenic | 30.0% | |
| TAAGCTAAAAGAAGCAATCA+AGG | + | chr6_1:83107763-83107782 | Msa0895350:CDS | 30.0% | |
| GAAGAAATCCAACAATTTAG+AGG | + | chr6_1:83107912-83107931 | Msa0895350:CDS | 30.0% | |
| TCATGAACATGATCATCAAG+AGG | + | chr6_1:83104089-83104108 | Msa0895350:CDS | 35.0% | |
| TGAACAAGAAGTTCATAGAG+AGG | - | chr6_1:83104153-83104172 | None:intergenic | 35.0% | |
| TAGATACATTGTGCACCAAA+AGG | - | chr6_1:83105056-83105075 | None:intergenic | 35.0% | |
| !! | TGATGGATACTTCATGGTTT+TGG | + | chr6_1:83105553-83105572 | Msa0895350:intron | 35.0% |
| TGAGCTTAATCATGTGGTAT+TGG | - | chr6_1:83106007-83106026 | None:intergenic | 35.0% | |
| GAAAATCCTTGATCAAGTCT+TGG | + | chr6_1:83106067-83106086 | Msa0895350:intron | 35.0% | |
| CTCTTTCACTAAAAACCGAA+GGG | + | chr6_1:83106180-83106199 | Msa0895350:intron | 35.0% | |
| TGGTTCAATTCATAACATGG+TGG | - | chr6_1:83106977-83106996 | None:intergenic | 35.0% | |
| GGATGAAAATCAGATGATTC+AGG | - | chr6_1:83107136-83107155 | None:intergenic | 35.0% | |
| ACTCAGTCAATCATAATGGT+TGG | - | chr6_1:83107157-83107176 | None:intergenic | 35.0% | |
| ! | TATGCAGGAAGCATATTGTT+TGG | + | chr6_1:83107733-83107752 | Msa0895350:intron | 35.0% |
| ! | CATGTTGTTTATGAAAGCCA+TGG | - | chr6_1:83107804-83107823 | None:intergenic | 35.0% |
| ACAACATGCATTCACAACTT+AGG | + | chr6_1:83107816-83107835 | Msa0895350:CDS | 35.0% | |
| CAACATGCATTCACAACTTA+GGG | + | chr6_1:83107817-83107836 | Msa0895350:CDS | 35.0% | |
| GTCATCAACCTCTAAATTGT+TGG | - | chr6_1:83107923-83107942 | None:intergenic | 35.0% | |
| !!! | TGACTTGTTTTTCAGTAGTG+TGG | + | chr6_1:83107939-83107958 | Msa0895350:three_prime_UTR | 35.0% |
| TGCATGTAGTATCCTAAGAT+AGG | + | chr6_1:83107965-83107984 | Msa0895350:three_prime_UTR | 35.0% | |
| TATGAGCAGTGTTGTAGATG+TGG | + | chr6_1:83103928-83103947 | Msa0895350:five_prime_UTR | 40.0% | |
| CAAGAAGTTCATAGAGAGGA+TGG | - | chr6_1:83104149-83104168 | None:intergenic | 40.0% | |
| GACCTTCAAACAATCCAAGT+GGG | - | chr6_1:83104178-83104197 | None:intergenic | 40.0% | |
| AGACCTTCAAACAATCCAAG+TGG | - | chr6_1:83104179-83104198 | None:intergenic | 40.0% | |
| GGCTAAAGAGGTTAAATCTG+AGG | - | chr6_1:83104833-83104852 | None:intergenic | 40.0% | |
| GGTTGGAGACATTTCTAACT+TGG | + | chr6_1:83105270-83105289 | Msa0895350:intron | 40.0% | |
| TGAAGAGATCAAGCTCAGAT+TGG | - | chr6_1:83105354-83105373 | None:intergenic | 40.0% | |
| ATCTGAGCTTGATCTCTTCA+TGG | + | chr6_1:83105354-83105373 | Msa0895350:CDS | 40.0% | |
| ACATTTACTTTAGGCCGCAA+AGG | + | chr6_1:83105729-83105748 | Msa0895350:intron | 40.0% | |
| ATATCCTCTGCAAACCTTTG+CGG | - | chr6_1:83105746-83105765 | None:intergenic | 40.0% | |
| AGGTCTCAGATTCGATTCTA+TGG | - | chr6_1:83105955-83105974 | None:intergenic | 40.0% | |
| !!! | CCTTCGGTTTTTAGTGAAAG+AGG | - | chr6_1:83106182-83106201 | None:intergenic | 40.0% |
| CCTCTTTCACTAAAAACCGA+AGG | + | chr6_1:83106179-83106198 | Msa0895350:intron | 40.0% | |
| AGAATCTTTGTGGCTAATGC+TGG | + | chr6_1:83106442-83106461 | Msa0895350:intron | 40.0% | |
| AAAGCCATGGAATTCTGTTG+TGG | - | chr6_1:83107791-83107810 | None:intergenic | 40.0% | |
| ACTTCTTGTTCAAGCCCACT+TGG | + | chr6_1:83104161-83104180 | Msa0895350:CDS | 45.0% | |
| AGCCCACTTGGATTGTTTGA+AGG | + | chr6_1:83104173-83104192 | Msa0895350:CDS | 45.0% | |
| ! | GAATCGAATCTGAGACCTTG+AGG | + | chr6_1:83105957-83105976 | Msa0895350:intron | 45.0% |
| GGAACCACAACAGAATTCCA+TGG | + | chr6_1:83107784-83107803 | Msa0895350:CDS | 45.0% | |
| CTTGAAGATGTAGTAGCAGC+TGG | - | chr6_1:83107878-83107897 | None:intergenic | 45.0% | |
| !!! | TTATATAGTTTTTTTTTTAA+AGG | + | chr6_1:83104922-83104941 | Msa0895350:intron | 5.0% |
| !!! | TACTTTTTTTTTTTTTTTTT+TGG | - | chr6_1:83105797-83105816 | None:intergenic | 5.0% |
| !!! | AATTTTTAAATTTATCAATA+AGG | - | chr6_1:83105828-83105847 | None:intergenic | 5.0% |
| GAGAGAGAGAGAGAGAGAGA+TGG | - | chr6_1:83104203-83104222 | None:intergenic | 50.0% | |
| ! | TCGAATCTGAGACCTTGAGG+AGG | + | chr6_1:83105960-83105979 | Msa0895350:intron | 50.0% |
| ! | TGAGAGTGTGTTCCTCCTCA+AGG | - | chr6_1:83105975-83105994 | None:intergenic | 50.0% |
| TAGGCCGCAAAGGTTTGCAG+AGG | + | chr6_1:83105739-83105758 | Msa0895350:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 83103853 | 83108091 | 83103853 | ID=Msa0895350;Name=Msa0895350 |
| chr6_1 | mRNA | 83103853 | 83108091 | 83103853 | ID=Msa0895350-mRNA-1;Parent=Msa0895350;Name=Msa0895350-mRNA-1;_AED=0.02;_eAED=0.02;_QI=138|1|1|1|1|1|3|160|166 |
| chr6_1 | exon | 83103853 | 83104194 | 83103853 | ID=Msa0895350-mRNA-1:exon:14006;Parent=Msa0895350-mRNA-1 |
| chr6_1 | exon | 83105271 | 83105375 | 83105271 | ID=Msa0895350-mRNA-1:exon:14007;Parent=Msa0895350-mRNA-1 |
| chr6_1 | exon | 83107740 | 83108091 | 83107740 | ID=Msa0895350-mRNA-1:exon:14008;Parent=Msa0895350-mRNA-1 |
| chr6_1 | five_prime_UTR | 83103853 | 83103990 | 83103853 | ID=Msa0895350-mRNA-1:five_prime_utr;Parent=Msa0895350-mRNA-1 |
| chr6_1 | CDS | 83103991 | 83104194 | 83103991 | ID=Msa0895350-mRNA-1:cds;Parent=Msa0895350-mRNA-1 |
| chr6_1 | CDS | 83105271 | 83105375 | 83105271 | ID=Msa0895350-mRNA-1:cds;Parent=Msa0895350-mRNA-1 |
| chr6_1 | CDS | 83107740 | 83107931 | 83107740 | ID=Msa0895350-mRNA-1:cds;Parent=Msa0895350-mRNA-1 |
| chr6_1 | three_prime_UTR | 83107932 | 83108091 | 83107932 | ID=Msa0895350-mRNA-1:three_prime_utr;Parent=Msa0895350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
