Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0960800 | sp|Q9FP29|KNOS1_ORYSJ | 32.479 | 117 | 70 | 3 | 44 | 155 | 41 | 153 | 1.26e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0960800 | A0A396HKB7 | 94.578 | 166 | 8 | 1 | 1 | 166 | 22 | 186 | 3.36e-102 | 300 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0895350 | Msa0960800 | 0.931097 | 6.239458e-94 | -8.615850e-47 |
| Msa0960800 | Msa0964040 | 0.974003 | 2.135933e-137 | -8.615850e-47 |
| Msa0960800 | Msa1228580 | 0.806139 | 9.510620e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0960800 | MtrunA17_Chr6g0479181 | 94.578 | 166 | 8 | 1 | 1 | 166 | 22 | 186 | 6.47e-106 | 300 |
| Msa0960800 | MtrunA17_Chr1g0192791 | 34.146 | 123 | 73 | 2 | 43 | 157 | 16 | 138 | 9.70e-14 | 67.0 |
| Msa0960800 | MtrunA17_Chr5g0413201 | 32.174 | 115 | 70 | 3 | 45 | 152 | 71 | 184 | 1.90e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0960800 | AT1G14760.2 | 41.905 | 105 | 54 | 2 | 45 | 142 | 32 | 136 | 6.30e-19 | 78.6 |
| Msa0960800 | AT1G70510.1 | 34.711 | 121 | 62 | 4 | 45 | 157 | 68 | 179 | 9.72e-13 | 65.1 |
| Msa0960800 | AT4G08150.1 | 37.143 | 105 | 59 | 2 | 44 | 141 | 132 | 236 | 1.13e-12 | 65.1 |
| Msa0960800 | AT1G23380.1 | 33.884 | 121 | 71 | 4 | 45 | 157 | 84 | 203 | 1.98e-11 | 61.2 |
Find 33 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATTAATTAACCTATCTT+AGG | 0.220258 | 6_3:-80918071 | None:intergenic |
| TAAGATAGGTTAATTAATTA+AGG | 0.224825 | 6_3:+80918073 | Msa0960800:three_prime_UTR |
| GTTATCTTATGTGACATTAA+TGG | 0.226329 | 6_3:+80918135 | Msa0960800:three_prime_UTR |
| GACACTGAAGAAACAAAATT+TGG | 0.269902 | 6_3:+80915405 | Msa0960800:CDS |
| GAAGAAATCCAACAATTTAG+AGG | 0.285678 | 6_3:+80918006 | Msa0960800:CDS |
| TTATCTTATGTGACATTAAT+GGG | 0.310800 | 6_3:+80918136 | Msa0960800:three_prime_UTR |
| AGAAGAAGATCAACAAGAAT+TGG | 0.342867 | 6_3:+80914135 | Msa0960800:CDS |
| GTCATCAACCTCTAAATTGT+TGG | 0.364877 | 6_3:-80918014 | None:intergenic |
| ATCTGAGCTTGATCTCTTCA+TGG | 0.388306 | 6_3:+80915441 | Msa0960800:CDS |
| TATGCAGGAAGCATATTGTT+TGG | 0.414299 | 6_3:+80917827 | Msa0960800:intron |
| GGTTGGAGACATTTCTAACT+TGG | 0.415512 | 6_3:+80915357 | Msa0960800:intron |
| ACAACATGCATTCACAACTT+AGG | 0.418339 | 6_3:+80917910 | Msa0960800:CDS |
| AGCCCACTTGGATTGTTTGA+AGG | 0.420807 | 6_3:+80914267 | Msa0960800:CDS |
| CAACATGCATTCACAACTTA+GGG | 0.435046 | 6_3:+80917911 | Msa0960800:CDS |
| ACTTCTTGTTCAAGCCCACT+TGG | 0.469162 | 6_3:+80914255 | Msa0960800:CDS |
| TAATATTGTACTATATGATA+AGG | 0.478258 | 6_3:-80913961 | None:intergenic |
| TAAGCTAAAAGAAGCAATCA+AGG | 0.493094 | 6_3:+80917857 | Msa0960800:CDS |
| CTTGAAGATGTAGTAGCAGC+TGG | 0.513712 | 6_3:-80917969 | None:intergenic |
| TGAAGAGATCAAGCTCAGAT+TGG | 0.530302 | 6_3:-80915438 | None:intergenic |
| CAAGAAGTTCATAGAGAGGA+TGG | 0.543531 | 6_3:-80914240 | None:intergenic |
| TGCATGCAGTATCCTAAGAT+AGG | 0.554102 | 6_3:+80918059 | Msa0960800:three_prime_UTR |
| TTGTAGATGTGGTATATCAA+AGG | 0.560135 | 6_3:+80914033 | Msa0960800:five_prime_UTR |
| CATGTTGTTTATGAAAGCCA+TGG | 0.572966 | 6_3:-80917895 | None:intergenic |
| TTGGAATTAGAACATAAAGA+AGG | 0.573365 | 6_3:+80914154 | Msa0960800:CDS |
| GGAACCACAACAGAATTCCA+TGG | 0.612944 | 6_3:+80917878 | Msa0960800:CDS |
| GAATTAGAACATAAAGAAGG+TGG | 0.622015 | 6_3:+80914157 | Msa0960800:CDS |
| TCATGAACATGATCATCAAG+AGG | 0.622168 | 6_3:+80914183 | Msa0960800:CDS |
| TATGAGCAGTGTTGTAGATG+TGG | 0.638858 | 6_3:+80914022 | Msa0960800:five_prime_UTR |
| GACCTTCAAACAATCCAAGT+GGG | 0.643445 | 6_3:-80914269 | None:intergenic |
| ATAAGATAACATTTCAAACA+TGG | 0.644980 | 6_3:-80918122 | None:intergenic |
| AAAGCCATGGAATTCTGTTG+TGG | 0.656432 | 6_3:-80917882 | None:intergenic |
| TGAACAAGAAGTTCATAGAG+AGG | 0.660504 | 6_3:-80914244 | None:intergenic |
| AGACCTTCAAACAATCCAAG+TGG | 0.670849 | 6_3:-80914270 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATTTTTATTTTTT+TGG | - | chr6_3:80917533-80917552 | None:intergenic | 0.0% |
| !! | AAAATAAAAATAAAAAAAAA+TGG | + | chr6_3:80917535-80917554 | Msa0960800:intron | 0.0% |
| !!! | ATTTTATATCATTCAATTAT+AGG | - | chr6_3:80914440-80914459 | None:intergenic | 10.0% |
| !! | AATGATATAAAATCAAATTA+AGG | + | chr6_3:80914447-80914466 | Msa0960800:intron | 10.0% |
| !!! | ATAAAAGTTGTAATTTTTTT+AGG | + | chr6_3:80914819-80914838 | Msa0960800:intron | 10.0% |
| !!! | TAAAAGTTGTAATTTTTTTA+GGG | + | chr6_3:80914820-80914839 | Msa0960800:intron | 10.0% |
| !!! | TAAATCTTTTTTTTTTTGAA+TGG | - | chr6_3:80914940-80914959 | None:intergenic | 10.0% |
| !! | CTAGTTTATAAAAAATTATT+TGG | - | chr6_3:80916336-80916355 | None:intergenic | 10.0% |
| !!! | CAAATAATTTTTTATAAACT+AGG | + | chr6_3:80916334-80916353 | Msa0960800:intron | 10.0% |
| !! | AAAGTAAATGTTAATATAAT+TGG | - | chr6_3:80916368-80916387 | None:intergenic | 10.0% |
| !!! | TATGTTTAAAATTTTCTAAA+AGG | + | chr6_3:80916483-80916502 | Msa0960800:intron | 10.0% |
| !!! | TAATTTTTTTTCTTGTTTTT+AGG | - | chr6_3:80917045-80917064 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTGAAAGAAAAAA+AGG | - | chr6_3:80917123-80917142 | None:intergenic | 10.0% |
| !!! | TTTAAAACTACTATTTTTAT+AGG | - | chr6_3:80917357-80917376 | None:intergenic | 10.0% |
| !! | TAATATTGTACTATATGATA+AGG | - | chr6_3:80913964-80913983 | None:intergenic | 15.0% |
| !! | ATAACAAAAAGATTATACTT+TGG | + | chr6_3:80914704-80914723 | Msa0960800:intron | 15.0% |
| !! | AAGTCTAAATATATACAATT+TGG | + | chr6_3:80914771-80914790 | Msa0960800:intron | 15.0% |
| !! | GTTAATTCATAAAATTAAAG+AGG | - | chr6_3:80914964-80914983 | None:intergenic | 15.0% |
| !!! | TTAACATTTACTTTTTTGAA+TGG | + | chr6_3:80916374-80916393 | Msa0960800:intron | 15.0% |
| !!! | AAAAAAGGTCTTTTATTTTA+CGG | - | chr6_3:80917108-80917127 | None:intergenic | 15.0% |
| !!! | GATAAAACTGTTTTATTTAT+AGG | - | chr6_3:80917197-80917216 | None:intergenic | 15.0% |
| !! | TTAATTAATTAACCTATCTT+AGG | - | chr6_3:80918074-80918093 | None:intergenic | 15.0% |
| !! | TAAGATAGGTTAATTAATTA+AGG | + | chr6_3:80918073-80918092 | Msa0960800:three_prime_UTR | 15.0% |
| !! | TCTACTCAAAAATAGTTATA+TGG | + | chr6_3:80914066-80914085 | Msa0960800:exon | 20.0% |
| !! | TATAAAATCAAATTAAGGTG+TGG | + | chr6_3:80914452-80914471 | Msa0960800:intron | 20.0% |
| !!! | TTCAAATTAACTAACTTGTT+AGG | + | chr6_3:80914475-80914494 | Msa0960800:intron | 20.0% |
| !!! | AAGCATTAAAATTAACCTTT+TGG | + | chr6_3:80915125-80915144 | Msa0960800:intron | 20.0% |
| !! | TGAATAAATTATAAGACTTG+TGG | - | chr6_3:80915282-80915301 | None:intergenic | 20.0% |
| !! | AAAAACATTCATTCATTCAT+TGG | - | chr6_3:80915508-80915527 | None:intergenic | 20.0% |
| !!! | AAATTAAATCCATTGATTGA+TGG | + | chr6_3:80915628-80915647 | Msa0960800:intron | 20.0% |
| !!! | ATAAATCTTTTTTGAAGATG+AGG | - | chr6_3:80916247-80916266 | None:intergenic | 20.0% |
| !! | TTTCAATCAATATCAATACA+TGG | + | chr6_3:80916410-80916429 | Msa0960800:intron | 20.0% |
| !!! | TTTTTAAACTAGTTTCTAGT+TGG | + | chr6_3:80916445-80916464 | Msa0960800:intron | 20.0% |
| !!! | TTTTAAACTAGTTTCTAGTT+GGG | + | chr6_3:80916446-80916465 | Msa0960800:intron | 20.0% |
| !! | TTAATATATCAGAATCTTTG+TGG | + | chr6_3:80916527-80916546 | Msa0960800:intron | 20.0% |
| !! | GTTGTTATAGAACTTTAAAT+AGG | + | chr6_3:80916676-80916695 | Msa0960800:intron | 20.0% |
| !!! | TACTTTAAATTGCACATTTT+AGG | + | chr6_3:80916708-80916727 | Msa0960800:intron | 20.0% |
| !! | CATGAGAAAAATACTAATAT+TGG | - | chr6_3:80917329-80917348 | None:intergenic | 20.0% |
| !! | TATCTGTATAGAAAATTGAT+TGG | + | chr6_3:80917389-80917408 | Msa0960800:intron | 20.0% |
| !! | ATGTTGAATCATAAAAATGT+TGG | + | chr6_3:80917426-80917445 | Msa0960800:intron | 20.0% |
| !! | AATGTACATGTACAATTATA+TGG | + | chr6_3:80917491-80917510 | Msa0960800:intron | 20.0% |
| !!! | ACAATGAAATATGTTTTACA+CGG | + | chr6_3:80917618-80917637 | Msa0960800:intron | 20.0% |
| !!! | ACATTTTAATGATCAATTGA+GGG | - | chr6_3:80917695-80917714 | None:intergenic | 20.0% |
| !!! | AACATTTTAATGATCAATTG+AGG | - | chr6_3:80917696-80917715 | None:intergenic | 20.0% |
| !! | TCAATTGATCATTAAAATGT+TGG | + | chr6_3:80917695-80917714 | Msa0960800:intron | 20.0% |
| !! | ATAAGATAACATTTCAAACA+TGG | - | chr6_3:80918125-80918144 | None:intergenic | 20.0% |
| !! | TTATCTTATGTGACATTAAT+GGG | + | chr6_3:80918136-80918155 | Msa0960800:three_prime_UTR | 20.0% |
| ! | TTGGAATTAGAACATAAAGA+AGG | + | chr6_3:80914154-80914173 | Msa0960800:CDS | 25.0% |
| !! | TTTTAACATCTATCAATTGG+AGG | - | chr6_3:80914553-80914572 | None:intergenic | 25.0% |
| !! | CACTTTTAACATCTATCAAT+TGG | - | chr6_3:80914556-80914575 | None:intergenic | 25.0% |
| !!! | CTTTATTTTTCCATAAGAGA+AGG | - | chr6_3:80914613-80914632 | None:intergenic | 25.0% |
| ! | TATGATCAGATCACTATATT+TGG | - | chr6_3:80914745-80914764 | None:intergenic | 25.0% |
| !!! | TTTTTTTTGAATGGCTAAAG+AGG | - | chr6_3:80914931-80914950 | None:intergenic | 25.0% |
| ! | TGAATTGTTAAACAAACTCT+TGG | - | chr6_3:80915056-80915075 | None:intergenic | 25.0% |
| !!! | TAATACAAGAGCTCATTTTT+TGG | + | chr6_3:80915184-80915203 | Msa0960800:intron | 25.0% |
| !!! | GAGCTCTTTATTTATTTTTG+AGG | - | chr6_3:80915241-80915260 | None:intergenic | 25.0% |
| !! | TCTCTATATGTCATGTTTTT+AGG | + | chr6_3:80915336-80915355 | Msa0960800:intron | 25.0% |
| !!! | TATATGTCATGTTTTTAGGT+TGG | + | chr6_3:80915340-80915359 | Msa0960800:intron | 25.0% |
| ! | TCAAAAAGAGAGAGAAAAAA+TGG | - | chr6_3:80915477-80915496 | None:intergenic | 25.0% |
| ! | TATACAGTATATCTTTGTGA+TGG | + | chr6_3:80915543-80915562 | Msa0960800:intron | 25.0% |
| ! | TAGAAAAAATGTCACAATCA+AGG | - | chr6_3:80915747-80915766 | None:intergenic | 25.0% |
| !! | TGTCTTTTCACATTTACTTT+AGG | + | chr6_3:80915812-80915831 | Msa0960800:intron | 25.0% |
| ! | AATAATTGAGCTTAATCATG+TGG | - | chr6_3:80916108-80916127 | None:intergenic | 25.0% |
| !! | AAGGATTTTCTTGAATGATT+TGG | - | chr6_3:80916152-80916171 | None:intergenic | 25.0% |
| ! | TGATAAATATAAACTGACCA+AGG | - | chr6_3:80916198-80916217 | None:intergenic | 25.0% |
| !!! | TTATTTTATCTGAAACCCTT+CGG | - | chr6_3:80916293-80916312 | None:intergenic | 25.0% |
| !!! | ACACTTTTCTGAAAATCTAA+AGG | - | chr6_3:80916580-80916599 | None:intergenic | 25.0% |
| ! | CATTCTTAAAGAGAATGTTT+CGG | - | chr6_3:80916610-80916629 | None:intergenic | 25.0% |
| ! | ATCATAAAAGTTGTTGTGAT+GGG | - | chr6_3:80916746-80916765 | None:intergenic | 25.0% |
| ! | AATCATAAAAGTTGTTGTGA+TGG | - | chr6_3:80916747-80916766 | None:intergenic | 25.0% |
| ! | TCTCATCATACTAATATTAG+AGG | + | chr6_3:80916832-80916851 | Msa0960800:intron | 25.0% |
| !! | TACAAATGATGATGTATGAT+TGG | + | chr6_3:80917592-80917611 | Msa0960800:intron | 25.0% |
| ! | TTTATTCAACCAATATATGC+AGG | + | chr6_3:80917812-80917831 | Msa0960800:intron | 25.0% |
| ! | GTTATCTTATGTGACATTAA+TGG | + | chr6_3:80918135-80918154 | Msa0960800:three_prime_UTR | 25.0% |
| TTGTAGATGTGGTATATCAA+AGG | + | chr6_3:80914033-80914052 | Msa0960800:five_prime_UTR | 30.0% | |
| AGAAGAAGATCAACAAGAAT+TGG | + | chr6_3:80914135-80914154 | Msa0960800:CDS | 30.0% | |
| GAATTAGAACATAAAGAAGG+TGG | + | chr6_3:80914157-80914176 | Msa0960800:CDS | 30.0% | |
| ! | GTTTTCTTTTCCTTCTCTTA+TGG | + | chr6_3:80914600-80914619 | Msa0960800:intron | 30.0% |
| TGATTGCTCTTTGAACAAAT+TGG | - | chr6_3:80914873-80914892 | None:intergenic | 30.0% | |
| GACACTGAAGAAACAAAATT+TGG | + | chr6_3:80915405-80915424 | Msa0960800:CDS | 30.0% | |
| CATGAAAGATGACACAATAT+AGG | + | chr6_3:80915605-80915624 | Msa0960800:intron | 30.0% | |
| ! | ATGAAGTATCCATCAATCAA+TGG | - | chr6_3:80915640-80915659 | None:intergenic | 30.0% |
| ! | ATTGATTGATGGATACTTCA+TGG | + | chr6_3:80915639-80915658 | Msa0960800:intron | 30.0% |
| !!! | TACTTCATGGTTTTGGTTAA+AGG | + | chr6_3:80915652-80915671 | Msa0960800:intron | 30.0% |
| GTAGAGTCTCATTCAATATT+AGG | - | chr6_3:80915689-80915708 | None:intergenic | 30.0% | |
| AAATGTCACAATCAAGGAAT+TGG | - | chr6_3:80915741-80915760 | None:intergenic | 30.0% | |
| GATTCTCTATGGTATCAATT+TGG | - | chr6_3:80916037-80916056 | None:intergenic | 30.0% | |
| TATTAACCAAGACTTGATCA+AGG | - | chr6_3:80916171-80916190 | None:intergenic | 30.0% | |
| GTCTTGGTTAATATAATCCT+TGG | + | chr6_3:80916178-80916197 | Msa0960800:intron | 30.0% | |
| AGCTCCAAAACTTTGTAATA+TGG | + | chr6_3:80916790-80916809 | Msa0960800:intron | 30.0% | |
| ! | CTTGCCATATTACAAAGTTT+TGG | - | chr6_3:80916797-80916816 | None:intergenic | 30.0% |
| ! | GATTGGTTCAATTCATAACA+TGG | - | chr6_3:80917074-80917093 | None:intergenic | 30.0% |
| ! | TTACGGTCGAAATTTTTGAT+TGG | - | chr6_3:80917091-80917110 | None:intergenic | 30.0% |
| ATTCACTCAGTCAATCATAA+TGG | - | chr6_3:80917255-80917274 | None:intergenic | 30.0% | |
| AATATGCTTCCTGCATATAT+TGG | - | chr6_3:80917824-80917843 | None:intergenic | 30.0% | |
| TAAGCTAAAAGAAGCAATCA+AGG | + | chr6_3:80917857-80917876 | Msa0960800:CDS | 30.0% | |
| GAAGAAATCCAACAATTTAG+AGG | + | chr6_3:80918006-80918025 | Msa0960800:CDS | 30.0% | |
| TCATGAACATGATCATCAAG+AGG | + | chr6_3:80914183-80914202 | Msa0960800:CDS | 35.0% | |
| TGAACAAGAAGTTCATAGAG+AGG | - | chr6_3:80914247-80914266 | None:intergenic | 35.0% | |
| TAGATACATTGTGCACCAAA+AGG | - | chr6_3:80915143-80915162 | None:intergenic | 35.0% | |
| !! | TGATGGATACTTCATGGTTT+TGG | + | chr6_3:80915645-80915664 | Msa0960800:intron | 35.0% |
| TGAGCTTAATCATGTGGTAT+TGG | - | chr6_3:80916102-80916121 | None:intergenic | 35.0% | |
| GAAAATCCTTGATCAAGTCT+TGG | + | chr6_3:80916162-80916181 | Msa0960800:intron | 35.0% | |
| CTCTTTCACTAAAAACCGAA+GGG | + | chr6_3:80916275-80916294 | Msa0960800:intron | 35.0% | |
| TGGTTCAATTCATAACATGG+TGG | - | chr6_3:80917071-80917090 | None:intergenic | 35.0% | |
| GGATGAAAATCAGATGATTC+AGG | - | chr6_3:80917230-80917249 | None:intergenic | 35.0% | |
| ACTCAGTCAATCATAATGGT+TGG | - | chr6_3:80917251-80917270 | None:intergenic | 35.0% | |
| ! | TATGCAGGAAGCATATTGTT+TGG | + | chr6_3:80917827-80917846 | Msa0960800:intron | 35.0% |
| ! | CATGTTGTTTATGAAAGCCA+TGG | - | chr6_3:80917898-80917917 | None:intergenic | 35.0% |
| ACAACATGCATTCACAACTT+AGG | + | chr6_3:80917910-80917929 | Msa0960800:CDS | 35.0% | |
| CAACATGCATTCACAACTTA+GGG | + | chr6_3:80917911-80917930 | Msa0960800:CDS | 35.0% | |
| GTCATCAACCTCTAAATTGT+TGG | - | chr6_3:80918017-80918036 | None:intergenic | 35.0% | |
| !!! | TGACTTGTTTTTCAGTAGTG+TGG | + | chr6_3:80918033-80918052 | Msa0960800:three_prime_UTR | 35.0% |
| TATGAGCAGTGTTGTAGATG+TGG | + | chr6_3:80914022-80914041 | Msa0960800:five_prime_UTR | 40.0% | |
| CAAGAAGTTCATAGAGAGGA+TGG | - | chr6_3:80914243-80914262 | None:intergenic | 40.0% | |
| GACCTTCAAACAATCCAAGT+GGG | - | chr6_3:80914272-80914291 | None:intergenic | 40.0% | |
| AGACCTTCAAACAATCCAAG+TGG | - | chr6_3:80914273-80914292 | None:intergenic | 40.0% | |
| GGCTAAAGAGGTTAAATCTG+AGG | - | chr6_3:80914919-80914938 | None:intergenic | 40.0% | |
| GGTTGGAGACATTTCTAACT+TGG | + | chr6_3:80915357-80915376 | Msa0960800:intron | 40.0% | |
| TGAAGAGATCAAGCTCAGAT+TGG | - | chr6_3:80915441-80915460 | None:intergenic | 40.0% | |
| ATCTGAGCTTGATCTCTTCA+TGG | + | chr6_3:80915441-80915460 | Msa0960800:CDS | 40.0% | |
| ACATTTACTTTAGGCCGCAA+AGG | + | chr6_3:80915821-80915840 | Msa0960800:intron | 40.0% | |
| ATATCCTCTGCAAACCTTTG+CGG | - | chr6_3:80915838-80915857 | None:intergenic | 40.0% | |
| GTCTCAGATTCGATTCTCTA+TGG | - | chr6_3:80916048-80916067 | None:intergenic | 40.0% | |
| !! | TGTGGTATTGGTTTGAGACA+TGG | - | chr6_3:80916090-80916109 | None:intergenic | 40.0% |
| !!! | CCTTCGGTTTTTAGTGAAAG+AGG | - | chr6_3:80916277-80916296 | None:intergenic | 40.0% |
| CCTCTTTCACTAAAAACCGA+AGG | + | chr6_3:80916274-80916293 | Msa0960800:intron | 40.0% | |
| AGAATCTTTGTGGCTAATGC+TGG | + | chr6_3:80916537-80916556 | Msa0960800:intron | 40.0% | |
| AAAGCCATGGAATTCTGTTG+TGG | - | chr6_3:80917885-80917904 | None:intergenic | 40.0% | |
| TGCATGCAGTATCCTAAGAT+AGG | + | chr6_3:80918059-80918078 | Msa0960800:three_prime_UTR | 40.0% | |
| ACTTCTTGTTCAAGCCCACT+TGG | + | chr6_3:80914255-80914274 | Msa0960800:CDS | 45.0% | |
| AGCCCACTTGGATTGTTTGA+AGG | + | chr6_3:80914267-80914286 | Msa0960800:CDS | 45.0% | |
| ! | GAATCGAATCTGAGACCTTG+AGG | + | chr6_3:80916052-80916071 | Msa0960800:intron | 45.0% |
| TGGAAATGTGTTCCTCCTCA+AGG | - | chr6_3:80916070-80916089 | None:intergenic | 45.0% | |
| GGAACCACAACAGAATTCCA+TGG | + | chr6_3:80917878-80917897 | Msa0960800:CDS | 45.0% | |
| CTTGAAGATGTAGTAGCAGC+TGG | - | chr6_3:80917972-80917991 | None:intergenic | 45.0% | |
| !!! | TTATATAGTTTTTTTTTTAA+AGG | + | chr6_3:80915009-80915028 | Msa0960800:intron | 5.0% |
| !!! | ACTTTTTTTTTTTTTTTTTT+TGG | - | chr6_3:80915889-80915908 | None:intergenic | 5.0% |
| !!! | AATTTTTAAATTTATCAATA+AGG | - | chr6_3:80915921-80915940 | None:intergenic | 5.0% |
| GAGAGAGAGAGAGAGAGAGA+TGG | - | chr6_3:80914297-80914316 | None:intergenic | 50.0% | |
| ! | TCGAATCTGAGACCTTGAGG+AGG | + | chr6_3:80916055-80916074 | Msa0960800:intron | 50.0% |
| TAGGCCGCAAAGGTTTGCAG+AGG | + | chr6_3:80915831-80915850 | Msa0960800:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 80913947 | 80918185 | 80913947 | ID=Msa0960800;Name=Msa0960800 |
| chr6_3 | mRNA | 80913947 | 80918185 | 80913947 | ID=Msa0960800-mRNA-1;Parent=Msa0960800;Name=Msa0960800-mRNA-1;_AED=0.02;_eAED=0.02;_QI=138|1|1|1|1|1|3|160|166 |
| chr6_3 | exon | 80913947 | 80914288 | 80913947 | ID=Msa0960800-mRNA-1:exon:14513;Parent=Msa0960800-mRNA-1 |
| chr6_3 | exon | 80915358 | 80915462 | 80915358 | ID=Msa0960800-mRNA-1:exon:14514;Parent=Msa0960800-mRNA-1 |
| chr6_3 | exon | 80917834 | 80918185 | 80917834 | ID=Msa0960800-mRNA-1:exon:14515;Parent=Msa0960800-mRNA-1 |
| chr6_3 | five_prime_UTR | 80913947 | 80914084 | 80913947 | ID=Msa0960800-mRNA-1:five_prime_utr;Parent=Msa0960800-mRNA-1 |
| chr6_3 | CDS | 80914085 | 80914288 | 80914085 | ID=Msa0960800-mRNA-1:cds;Parent=Msa0960800-mRNA-1 |
| chr6_3 | CDS | 80915358 | 80915462 | 80915358 | ID=Msa0960800-mRNA-1:cds;Parent=Msa0960800-mRNA-1 |
| chr6_3 | CDS | 80917834 | 80918025 | 80917834 | ID=Msa0960800-mRNA-1:cds;Parent=Msa0960800-mRNA-1 |
| chr6_3 | three_prime_UTR | 80918026 | 80918185 | 80918026 | ID=Msa0960800-mRNA-1:three_prime_utr;Parent=Msa0960800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
