Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964040 | XP_003619876.2 | 94.578 | 166 | 8 | 1 | 1 | 166 | 22 | 186 | 7.03e-102 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964040 | sp|Q9FP29|KNOS1_ORYSJ | 32.479 | 117 | 70 | 3 | 44 | 155 | 41 | 153 | 1.26e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0895350 | Msa0964040 | 0.937261 | 4.618393e-98 | -8.615850e-47 |
| Msa0960800 | Msa0964040 | 0.974003 | 2.135933e-137 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964040 | MtrunA17_Chr6g0479181 | 94.578 | 166 | 8 | 1 | 1 | 166 | 22 | 186 | 6.47e-106 | 300 |
| Msa0964040 | MtrunA17_Chr1g0192791 | 34.146 | 123 | 73 | 2 | 43 | 157 | 16 | 138 | 9.70e-14 | 67.0 |
| Msa0964040 | MtrunA17_Chr5g0413201 | 32.174 | 115 | 70 | 3 | 45 | 152 | 71 | 184 | 1.90e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964040 | AT1G14760.2 | 41.905 | 105 | 54 | 2 | 45 | 142 | 32 | 136 | 6.30e-19 | 78.6 |
| Msa0964040 | AT1G70510.1 | 34.711 | 121 | 62 | 4 | 45 | 157 | 68 | 179 | 9.72e-13 | 65.1 |
| Msa0964040 | AT4G08150.1 | 37.143 | 105 | 59 | 2 | 44 | 141 | 132 | 236 | 1.13e-12 | 65.1 |
| Msa0964040 | AT1G23380.1 | 33.884 | 121 | 71 | 4 | 45 | 157 | 84 | 203 | 1.98e-11 | 61.2 |
Find 33 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATTAATTAACCTATCTT+AGG | 0.220258 | 6_3:-90126164 | None:intergenic |
| TAAGATAGGTTAATTAATTA+AGG | 0.224825 | 6_3:+90126166 | Msa0964040:three_prime_UTR |
| GTTATCTTATGTGACATTAA+TGG | 0.226329 | 6_3:+90126228 | Msa0964040:three_prime_UTR |
| GACACTGAAGAAACAAAATT+TGG | 0.269902 | 6_3:+90123499 | Msa0964040:CDS |
| GAAGAAATCCAACAATTTAG+AGG | 0.285678 | 6_3:+90126099 | Msa0964040:CDS |
| TTATCTTATGTGACATTAAT+GGG | 0.310800 | 6_3:+90126229 | Msa0964040:three_prime_UTR |
| AGAAGAAGATCAACAAGAAT+TGG | 0.342867 | 6_3:+90122229 | Msa0964040:CDS |
| GTCATCAACCTCTAAATTGT+TGG | 0.364877 | 6_3:-90126107 | None:intergenic |
| ATCTGAGCTTGATCTCTTCA+TGG | 0.388306 | 6_3:+90123535 | Msa0964040:CDS |
| TATGCAGGAAGCATATTGTT+TGG | 0.414299 | 6_3:+90125920 | Msa0964040:intron |
| GGTTGGAGACATTTCTAACT+TGG | 0.415512 | 6_3:+90123451 | Msa0964040:intron |
| ACAACATGCATTCACAACTT+AGG | 0.418339 | 6_3:+90126003 | Msa0964040:CDS |
| AGCCCACTTGGATTGTTTGA+AGG | 0.420807 | 6_3:+90122361 | Msa0964040:CDS |
| CAACATGCATTCACAACTTA+GGG | 0.435046 | 6_3:+90126004 | Msa0964040:CDS |
| ACTTCTTGTTCAAGCCCACT+TGG | 0.469162 | 6_3:+90122349 | Msa0964040:CDS |
| TAATATTGTACTATATGATA+AGG | 0.478258 | 6_3:-90122055 | None:intergenic |
| TAAGCTAAAAGAAGCAATCA+AGG | 0.493094 | 6_3:+90125950 | Msa0964040:CDS |
| CTTGAAGATGTAGTAGCAGC+TGG | 0.513712 | 6_3:-90126062 | None:intergenic |
| TGAAGAGATCAAGCTCAGAT+TGG | 0.530302 | 6_3:-90123532 | None:intergenic |
| CAAGAAGTTCATAGAGAGGA+TGG | 0.543531 | 6_3:-90122334 | None:intergenic |
| TGCATGCAGTATCCTAAGAT+AGG | 0.554102 | 6_3:+90126152 | Msa0964040:three_prime_UTR |
| TTGTAGATGTGGTATATCAA+AGG | 0.560135 | 6_3:+90122127 | Msa0964040:five_prime_UTR |
| CATGTTGTTTATGAAAGCCA+TGG | 0.572966 | 6_3:-90125988 | None:intergenic |
| TTGGAATTAGAACATAAAGA+AGG | 0.573365 | 6_3:+90122248 | Msa0964040:CDS |
| GGAACCACAACAGAATTCCA+TGG | 0.612944 | 6_3:+90125971 | Msa0964040:CDS |
| GAATTAGAACATAAAGAAGG+TGG | 0.622015 | 6_3:+90122251 | Msa0964040:CDS |
| TCATGAACATGATCATCAAG+AGG | 0.622168 | 6_3:+90122277 | Msa0964040:CDS |
| TATGAGCAGTGTTGTAGATG+TGG | 0.638858 | 6_3:+90122116 | Msa0964040:five_prime_UTR |
| GACCTTCAAACAATCCAAGT+GGG | 0.643445 | 6_3:-90122363 | None:intergenic |
| ATAAGATAACATTTCAAACA+TGG | 0.644980 | 6_3:-90126215 | None:intergenic |
| AAAGCCATGGAATTCTGTTG+TGG | 0.656432 | 6_3:-90125975 | None:intergenic |
| TGAACAAGAAGTTCATAGAG+AGG | 0.660504 | 6_3:-90122338 | None:intergenic |
| AGACCTTCAAACAATCCAAG+TGG | 0.670849 | 6_3:-90122364 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATTTTTATTTTTT+TGG | - | chr6_3:90125626-90125645 | None:intergenic | 0.0% |
| !! | AAAATAAAAATAAAAAAAAA+TGG | + | chr6_3:90125628-90125647 | Msa0964040:intron | 0.0% |
| !!! | ATTTTATATCATTCAATTAT+AGG | - | chr6_3:90122534-90122553 | None:intergenic | 10.0% |
| !! | AATGATATAAAATCAAATTA+AGG | + | chr6_3:90122541-90122560 | Msa0964040:intron | 10.0% |
| !!! | ATAAAAGTTGTAATTTTTTT+AGG | + | chr6_3:90122913-90122932 | Msa0964040:intron | 10.0% |
| !!! | TAAAAGTTGTAATTTTTTTA+GGG | + | chr6_3:90122914-90122933 | Msa0964040:intron | 10.0% |
| !!! | TAAATCTTTTTTTTTTTGAA+TGG | - | chr6_3:90123034-90123053 | None:intergenic | 10.0% |
| !! | CTAGTTTATAAAAAATTATT+TGG | - | chr6_3:90124429-90124448 | None:intergenic | 10.0% |
| !!! | CAAATAATTTTTTATAAACT+AGG | + | chr6_3:90124427-90124446 | Msa0964040:intron | 10.0% |
| !! | AAAGTAAATGTTAATATAAT+TGG | - | chr6_3:90124461-90124480 | None:intergenic | 10.0% |
| !!! | TATGTTTAAAATTTTCTAAA+AGG | + | chr6_3:90124576-90124595 | Msa0964040:intron | 10.0% |
| !!! | TAATTTTTTTTCTTGTTTTT+AGG | - | chr6_3:90125138-90125157 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTGAAAGAAAAAA+AGG | - | chr6_3:90125216-90125235 | None:intergenic | 10.0% |
| !!! | TTTAAAACTACTATTTTTAT+AGG | - | chr6_3:90125450-90125469 | None:intergenic | 10.0% |
| !! | TAATATTGTACTATATGATA+AGG | - | chr6_3:90122058-90122077 | None:intergenic | 15.0% |
| !! | ATAACAAAAAGATTATACTT+TGG | + | chr6_3:90122798-90122817 | Msa0964040:intron | 15.0% |
| !! | AAGTCTAAATATATACAATT+TGG | + | chr6_3:90122865-90122884 | Msa0964040:intron | 15.0% |
| !! | GTTAATTCATAAAATTAAAG+AGG | - | chr6_3:90123058-90123077 | None:intergenic | 15.0% |
| !!! | TTAACATTTACTTTTTTGAA+TGG | + | chr6_3:90124467-90124486 | Msa0964040:intron | 15.0% |
| !!! | AAAAAAGGTCTTTTATTTTA+CGG | - | chr6_3:90125201-90125220 | None:intergenic | 15.0% |
| !!! | GATAAAACTGTTTTATTTAT+AGG | - | chr6_3:90125290-90125309 | None:intergenic | 15.0% |
| !! | TTAATTAATTAACCTATCTT+AGG | - | chr6_3:90126167-90126186 | None:intergenic | 15.0% |
| !! | TAAGATAGGTTAATTAATTA+AGG | + | chr6_3:90126166-90126185 | Msa0964040:three_prime_UTR | 15.0% |
| !! | TCTACTCAAAAATAGTTATA+TGG | + | chr6_3:90122160-90122179 | Msa0964040:exon | 20.0% |
| !! | TATAAAATCAAATTAAGGTG+TGG | + | chr6_3:90122546-90122565 | Msa0964040:intron | 20.0% |
| !!! | TTCAAATTAACTAACTTGTT+AGG | + | chr6_3:90122569-90122588 | Msa0964040:intron | 20.0% |
| !!! | AAGCATTAAAATTAACCTTT+TGG | + | chr6_3:90123219-90123238 | Msa0964040:intron | 20.0% |
| !! | TGAATAAATTATAAGACTTG+TGG | - | chr6_3:90123376-90123395 | None:intergenic | 20.0% |
| !! | AAAAACATTCATTCATTCAT+TGG | - | chr6_3:90123602-90123621 | None:intergenic | 20.0% |
| !!! | AAATTAAATCCATTGATTGA+TGG | + | chr6_3:90123722-90123741 | Msa0964040:intron | 20.0% |
| !!! | ATAAATCTTTTTTGAAGATG+AGG | - | chr6_3:90124340-90124359 | None:intergenic | 20.0% |
| !! | TTTCAATCAATATCAATACA+TGG | + | chr6_3:90124503-90124522 | Msa0964040:intron | 20.0% |
| !!! | TTTTTAAACTAGTTTCTAGT+TGG | + | chr6_3:90124538-90124557 | Msa0964040:intron | 20.0% |
| !!! | TTTTAAACTAGTTTCTAGTT+GGG | + | chr6_3:90124539-90124558 | Msa0964040:intron | 20.0% |
| !! | TTAATATATCAGAATCTTTG+TGG | + | chr6_3:90124620-90124639 | Msa0964040:intron | 20.0% |
| !! | GTTGTTATAGAACTTTAAAT+AGG | + | chr6_3:90124769-90124788 | Msa0964040:intron | 20.0% |
| !!! | TACTTTAAATTGCACATTTT+AGG | + | chr6_3:90124801-90124820 | Msa0964040:intron | 20.0% |
| !! | CATGAGAAAAATACTAATAT+TGG | - | chr6_3:90125422-90125441 | None:intergenic | 20.0% |
| !! | TATCTGTATAGAAAATTGAT+TGG | + | chr6_3:90125482-90125501 | Msa0964040:intron | 20.0% |
| !! | ATGTTGAATCATAAAAATGT+TGG | + | chr6_3:90125519-90125538 | Msa0964040:intron | 20.0% |
| !! | AATGTACATGTACAATTATA+TGG | + | chr6_3:90125584-90125603 | Msa0964040:intron | 20.0% |
| !!! | ACAATGAAATATGTTTTACA+CGG | + | chr6_3:90125711-90125730 | Msa0964040:intron | 20.0% |
| !!! | ACATTTTAATGATCAATTGA+GGG | - | chr6_3:90125788-90125807 | None:intergenic | 20.0% |
| !!! | AACATTTTAATGATCAATTG+AGG | - | chr6_3:90125789-90125808 | None:intergenic | 20.0% |
| !! | TCAATTGATCATTAAAATGT+TGG | + | chr6_3:90125788-90125807 | Msa0964040:intron | 20.0% |
| !! | ATAAGATAACATTTCAAACA+TGG | - | chr6_3:90126218-90126237 | None:intergenic | 20.0% |
| !! | TTATCTTATGTGACATTAAT+GGG | + | chr6_3:90126229-90126248 | Msa0964040:three_prime_UTR | 20.0% |
| ! | TTGGAATTAGAACATAAAGA+AGG | + | chr6_3:90122248-90122267 | Msa0964040:CDS | 25.0% |
| !! | TTTTAACATCTATCAATTGG+AGG | - | chr6_3:90122647-90122666 | None:intergenic | 25.0% |
| !! | CACTTTTAACATCTATCAAT+TGG | - | chr6_3:90122650-90122669 | None:intergenic | 25.0% |
| !!! | CTTTATTTTTCCATAAGAGA+AGG | - | chr6_3:90122707-90122726 | None:intergenic | 25.0% |
| ! | TATGATCAGATCACTATATT+TGG | - | chr6_3:90122839-90122858 | None:intergenic | 25.0% |
| !!! | TTTTTTTTGAATGGCTAAAG+AGG | - | chr6_3:90123025-90123044 | None:intergenic | 25.0% |
| ! | TGAATTGTTAAACAAACTCT+TGG | - | chr6_3:90123150-90123169 | None:intergenic | 25.0% |
| !!! | TAATACAAGAGCTCATTTTT+TGG | + | chr6_3:90123278-90123297 | Msa0964040:intron | 25.0% |
| !!! | GAGCTCTTTATTTATTTTTG+AGG | - | chr6_3:90123335-90123354 | None:intergenic | 25.0% |
| !! | TCTCTATATGTCATGTTTTT+AGG | + | chr6_3:90123430-90123449 | Msa0964040:intron | 25.0% |
| !!! | TATATGTCATGTTTTTAGGT+TGG | + | chr6_3:90123434-90123453 | Msa0964040:intron | 25.0% |
| ! | TCAAAAAGAGAGAGAAAAAA+TGG | - | chr6_3:90123571-90123590 | None:intergenic | 25.0% |
| ! | TATACAGTATATCTTTGTGA+TGG | + | chr6_3:90123637-90123656 | Msa0964040:intron | 25.0% |
| ! | TAGAAAAAATGTCACAATCA+AGG | - | chr6_3:90123841-90123860 | None:intergenic | 25.0% |
| !! | TGTCTTTTCACATTTACTTT+AGG | + | chr6_3:90123906-90123925 | Msa0964040:intron | 25.0% |
| ! | AATAATTGAGCTTAATCATG+TGG | - | chr6_3:90124201-90124220 | None:intergenic | 25.0% |
| !! | AAGGATTTTCTTGAATGATT+TGG | - | chr6_3:90124245-90124264 | None:intergenic | 25.0% |
| ! | TGATAAATATAAACTGACCA+AGG | - | chr6_3:90124291-90124310 | None:intergenic | 25.0% |
| !!! | TTATTTTATCTGAAACCCTT+CGG | - | chr6_3:90124386-90124405 | None:intergenic | 25.0% |
| !!! | ACACTTTTCTGAAAATCTAA+AGG | - | chr6_3:90124673-90124692 | None:intergenic | 25.0% |
| ! | CATTCTTAAAGAGAATGTTT+CGG | - | chr6_3:90124703-90124722 | None:intergenic | 25.0% |
| ! | ATCATAAAAGTTGTTGTGAT+GGG | - | chr6_3:90124839-90124858 | None:intergenic | 25.0% |
| ! | AATCATAAAAGTTGTTGTGA+TGG | - | chr6_3:90124840-90124859 | None:intergenic | 25.0% |
| ! | TCTCATCATACTAATATTAG+AGG | + | chr6_3:90124925-90124944 | Msa0964040:intron | 25.0% |
| !! | TACAAATGATGATGTATGAT+TGG | + | chr6_3:90125685-90125704 | Msa0964040:intron | 25.0% |
| ! | TTTATTCAACCAATATATGC+AGG | + | chr6_3:90125905-90125924 | Msa0964040:intron | 25.0% |
| ! | GTTATCTTATGTGACATTAA+TGG | + | chr6_3:90126228-90126247 | Msa0964040:three_prime_UTR | 25.0% |
| TTGTAGATGTGGTATATCAA+AGG | + | chr6_3:90122127-90122146 | Msa0964040:five_prime_UTR | 30.0% | |
| AGAAGAAGATCAACAAGAAT+TGG | + | chr6_3:90122229-90122248 | Msa0964040:CDS | 30.0% | |
| GAATTAGAACATAAAGAAGG+TGG | + | chr6_3:90122251-90122270 | Msa0964040:CDS | 30.0% | |
| ! | GTTTTCTTTTCCTTCTCTTA+TGG | + | chr6_3:90122694-90122713 | Msa0964040:intron | 30.0% |
| TGATTGCTCTTTGAACAAAT+TGG | - | chr6_3:90122967-90122986 | None:intergenic | 30.0% | |
| GACACTGAAGAAACAAAATT+TGG | + | chr6_3:90123499-90123518 | Msa0964040:CDS | 30.0% | |
| CATGAAAGATGACACAATAT+AGG | + | chr6_3:90123699-90123718 | Msa0964040:intron | 30.0% | |
| ! | ATGAAGTATCCATCAATCAA+TGG | - | chr6_3:90123734-90123753 | None:intergenic | 30.0% |
| ! | ATTGATTGATGGATACTTCA+TGG | + | chr6_3:90123733-90123752 | Msa0964040:intron | 30.0% |
| !!! | TACTTCATGGTTTTGGTTAA+AGG | + | chr6_3:90123746-90123765 | Msa0964040:intron | 30.0% |
| GTAGAGTCTCATTCAATATT+AGG | - | chr6_3:90123783-90123802 | None:intergenic | 30.0% | |
| AAATGTCACAATCAAGGAAT+TGG | - | chr6_3:90123835-90123854 | None:intergenic | 30.0% | |
| GATTCTCTATGGTATCAATT+TGG | - | chr6_3:90124130-90124149 | None:intergenic | 30.0% | |
| TATTAACCAAGACTTGATCA+AGG | - | chr6_3:90124264-90124283 | None:intergenic | 30.0% | |
| GTCTTGGTTAATATAATCCT+TGG | + | chr6_3:90124271-90124290 | Msa0964040:intron | 30.0% | |
| AGCTCCAAAACTTTGTAATA+TGG | + | chr6_3:90124883-90124902 | Msa0964040:intron | 30.0% | |
| ! | CTTGCCATATTACAAAGTTT+TGG | - | chr6_3:90124890-90124909 | None:intergenic | 30.0% |
| ! | GATTGGTTCAATTCATAACA+TGG | - | chr6_3:90125167-90125186 | None:intergenic | 30.0% |
| ! | TTACGGTCGAAATTTTTGAT+TGG | - | chr6_3:90125184-90125203 | None:intergenic | 30.0% |
| ATTCACTCAGTCAATCATAA+TGG | - | chr6_3:90125348-90125367 | None:intergenic | 30.0% | |
| AATATGCTTCCTGCATATAT+TGG | - | chr6_3:90125917-90125936 | None:intergenic | 30.0% | |
| TAAGCTAAAAGAAGCAATCA+AGG | + | chr6_3:90125950-90125969 | Msa0964040:CDS | 30.0% | |
| GAAGAAATCCAACAATTTAG+AGG | + | chr6_3:90126099-90126118 | Msa0964040:CDS | 30.0% | |
| TCATGAACATGATCATCAAG+AGG | + | chr6_3:90122277-90122296 | Msa0964040:CDS | 35.0% | |
| TGAACAAGAAGTTCATAGAG+AGG | - | chr6_3:90122341-90122360 | None:intergenic | 35.0% | |
| TAGATACATTGTGCACCAAA+AGG | - | chr6_3:90123237-90123256 | None:intergenic | 35.0% | |
| !! | TGATGGATACTTCATGGTTT+TGG | + | chr6_3:90123739-90123758 | Msa0964040:intron | 35.0% |
| TGAGCTTAATCATGTGGTAT+TGG | - | chr6_3:90124195-90124214 | None:intergenic | 35.0% | |
| GAAAATCCTTGATCAAGTCT+TGG | + | chr6_3:90124255-90124274 | Msa0964040:intron | 35.0% | |
| CTCTTTCACTAAAAACCGAA+GGG | + | chr6_3:90124368-90124387 | Msa0964040:intron | 35.0% | |
| TGGTTCAATTCATAACATGG+TGG | - | chr6_3:90125164-90125183 | None:intergenic | 35.0% | |
| GGATGAAAATCAGATGATTC+AGG | - | chr6_3:90125323-90125342 | None:intergenic | 35.0% | |
| ACTCAGTCAATCATAATGGT+TGG | - | chr6_3:90125344-90125363 | None:intergenic | 35.0% | |
| ! | TATGCAGGAAGCATATTGTT+TGG | + | chr6_3:90125920-90125939 | Msa0964040:intron | 35.0% |
| ! | CATGTTGTTTATGAAAGCCA+TGG | - | chr6_3:90125991-90126010 | None:intergenic | 35.0% |
| ACAACATGCATTCACAACTT+AGG | + | chr6_3:90126003-90126022 | Msa0964040:CDS | 35.0% | |
| CAACATGCATTCACAACTTA+GGG | + | chr6_3:90126004-90126023 | Msa0964040:CDS | 35.0% | |
| GTCATCAACCTCTAAATTGT+TGG | - | chr6_3:90126110-90126129 | None:intergenic | 35.0% | |
| !!! | TGACTTGTTTTTCAGTAGTG+TGG | + | chr6_3:90126126-90126145 | Msa0964040:three_prime_UTR | 35.0% |
| TATGAGCAGTGTTGTAGATG+TGG | + | chr6_3:90122116-90122135 | Msa0964040:five_prime_UTR | 40.0% | |
| CAAGAAGTTCATAGAGAGGA+TGG | - | chr6_3:90122337-90122356 | None:intergenic | 40.0% | |
| GACCTTCAAACAATCCAAGT+GGG | - | chr6_3:90122366-90122385 | None:intergenic | 40.0% | |
| AGACCTTCAAACAATCCAAG+TGG | - | chr6_3:90122367-90122386 | None:intergenic | 40.0% | |
| GGCTAAAGAGGTTAAATCTG+AGG | - | chr6_3:90123013-90123032 | None:intergenic | 40.0% | |
| GGTTGGAGACATTTCTAACT+TGG | + | chr6_3:90123451-90123470 | Msa0964040:intron | 40.0% | |
| TGAAGAGATCAAGCTCAGAT+TGG | - | chr6_3:90123535-90123554 | None:intergenic | 40.0% | |
| ATCTGAGCTTGATCTCTTCA+TGG | + | chr6_3:90123535-90123554 | Msa0964040:CDS | 40.0% | |
| ACATTTACTTTAGGCCGCAA+AGG | + | chr6_3:90123915-90123934 | Msa0964040:intron | 40.0% | |
| ATATCCTCTGCAAACCTTTG+CGG | - | chr6_3:90123932-90123951 | None:intergenic | 40.0% | |
| GTCTCAGATTCGATTCTCTA+TGG | - | chr6_3:90124141-90124160 | None:intergenic | 40.0% | |
| !! | TGTGGTATTGGTTTGAGACA+TGG | - | chr6_3:90124183-90124202 | None:intergenic | 40.0% |
| !!! | CCTTCGGTTTTTAGTGAAAG+AGG | - | chr6_3:90124370-90124389 | None:intergenic | 40.0% |
| CCTCTTTCACTAAAAACCGA+AGG | + | chr6_3:90124367-90124386 | Msa0964040:intron | 40.0% | |
| AGAATCTTTGTGGCTAATGC+TGG | + | chr6_3:90124630-90124649 | Msa0964040:intron | 40.0% | |
| AAAGCCATGGAATTCTGTTG+TGG | - | chr6_3:90125978-90125997 | None:intergenic | 40.0% | |
| TGCATGCAGTATCCTAAGAT+AGG | + | chr6_3:90126152-90126171 | Msa0964040:three_prime_UTR | 40.0% | |
| ACTTCTTGTTCAAGCCCACT+TGG | + | chr6_3:90122349-90122368 | Msa0964040:CDS | 45.0% | |
| AGCCCACTTGGATTGTTTGA+AGG | + | chr6_3:90122361-90122380 | Msa0964040:CDS | 45.0% | |
| ! | GAATCGAATCTGAGACCTTG+AGG | + | chr6_3:90124145-90124164 | Msa0964040:intron | 45.0% |
| TGGAAATGTGTTCCTCCTCA+AGG | - | chr6_3:90124163-90124182 | None:intergenic | 45.0% | |
| GGAACCACAACAGAATTCCA+TGG | + | chr6_3:90125971-90125990 | Msa0964040:CDS | 45.0% | |
| CTTGAAGATGTAGTAGCAGC+TGG | - | chr6_3:90126065-90126084 | None:intergenic | 45.0% | |
| !!! | TTATATAGTTTTTTTTTTAA+AGG | + | chr6_3:90123103-90123122 | Msa0964040:intron | 5.0% |
| !!! | TACTTTTTTTTTTTTTTTTT+TGG | - | chr6_3:90123983-90124002 | None:intergenic | 5.0% |
| !!! | AATTTTTAAATTTATCAATA+AGG | - | chr6_3:90124014-90124033 | None:intergenic | 5.0% |
| GAGAGAGAGAGAGAGAGAGA+TGG | - | chr6_3:90122391-90122410 | None:intergenic | 50.0% | |
| ! | TCGAATCTGAGACCTTGAGG+AGG | + | chr6_3:90124148-90124167 | Msa0964040:intron | 50.0% |
| TAGGCCGCAAAGGTTTGCAG+AGG | + | chr6_3:90123925-90123944 | Msa0964040:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 90122041 | 90126278 | 90122041 | ID=Msa0964040;Name=Msa0964040 |
| chr6_3 | mRNA | 90122041 | 90126278 | 90122041 | ID=Msa0964040-mRNA-1;Parent=Msa0964040;Name=Msa0964040-mRNA-1;_AED=0.02;_eAED=0.02;_QI=138|1|1|1|1|1|3|160|166 |
| chr6_3 | exon | 90122041 | 90122382 | 90122041 | ID=Msa0964040-mRNA-1:exon:16209;Parent=Msa0964040-mRNA-1 |
| chr6_3 | exon | 90123452 | 90123556 | 90123452 | ID=Msa0964040-mRNA-1:exon:16210;Parent=Msa0964040-mRNA-1 |
| chr6_3 | exon | 90125927 | 90126278 | 90125927 | ID=Msa0964040-mRNA-1:exon:16211;Parent=Msa0964040-mRNA-1 |
| chr6_3 | five_prime_UTR | 90122041 | 90122178 | 90122041 | ID=Msa0964040-mRNA-1:five_prime_utr;Parent=Msa0964040-mRNA-1 |
| chr6_3 | CDS | 90122179 | 90122382 | 90122179 | ID=Msa0964040-mRNA-1:cds;Parent=Msa0964040-mRNA-1 |
| chr6_3 | CDS | 90123452 | 90123556 | 90123452 | ID=Msa0964040-mRNA-1:cds;Parent=Msa0964040-mRNA-1 |
| chr6_3 | CDS | 90125927 | 90126118 | 90125927 | ID=Msa0964040-mRNA-1:cds;Parent=Msa0964040-mRNA-1 |
| chr6_3 | three_prime_UTR | 90126119 | 90126278 | 90126119 | ID=Msa0964040-mRNA-1:three_prime_utr;Parent=Msa0964040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
