Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896550 | XP_003620324.1 | 97.098 | 379 | 11 | 0 | 2 | 380 | 4 | 382 | 0.0 | 769 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896550 | sp|F4JJR8|FEY_ARATH | 70.292 | 377 | 107 | 2 | 4 | 380 | 5 | 376 | 0.0 | 538 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896550 | G7KLR3 | 97.098 | 379 | 11 | 0 | 2 | 380 | 4 | 382 | 0.0 | 769 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0702350 | Msa0896550 | 0.806505 | 7.963902e-50 | -8.615850e-47 |
| Msa0702680 | Msa0896550 | 0.814037 | 1.888669e-51 | -8.615850e-47 |
| Msa0896550 | Msa0930780 | 0.806105 | 9.666133e-50 | -8.615850e-47 |
| Msa0896550 | Msa1231790 | 0.815946 | 7.124601e-52 | -8.615850e-47 |
| Msa0896550 | Msa1459180 | 0.816258 | 6.066942e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896550 | MtrunA17_Chr6g0481311 | 97.098 | 379 | 11 | 0 | 2 | 380 | 4 | 382 | 0.0 | 769 |
| Msa0896550 | MtrunA17_Chr1g0202931 | 32.566 | 304 | 176 | 9 | 60 | 355 | 30 | 312 | 3.35e-36 | 134 |
| Msa0896550 | MtrunA17_Chr8g0386971 | 32.558 | 301 | 178 | 6 | 60 | 354 | 30 | 311 | 9.83e-36 | 132 |
| Msa0896550 | MtrunA17_Chr1g0202891 | 36.187 | 257 | 144 | 8 | 60 | 307 | 30 | 275 | 1.68e-34 | 129 |
| Msa0896550 | MtrunA17_Chr1g0202861 | 35.938 | 256 | 146 | 8 | 60 | 307 | 71 | 316 | 5.04e-33 | 126 |
| Msa0896550 | MtrunA17_Chr7g0262941 | 32.075 | 318 | 176 | 11 | 58 | 361 | 33 | 324 | 3.67e-32 | 123 |
| Msa0896550 | MtrunA17_Chr1g0202871 | 30.592 | 304 | 182 | 9 | 60 | 355 | 30 | 312 | 2.63e-31 | 120 |
| Msa0896550 | MtrunA17_Chr8g0388831 | 29.221 | 308 | 190 | 7 | 57 | 355 | 33 | 321 | 1.49e-29 | 116 |
| Msa0896550 | MtrunA17_Chr6g0470501 | 31.494 | 308 | 177 | 8 | 60 | 355 | 57 | 342 | 1.69e-29 | 116 |
| Msa0896550 | MtrunA17_Chr1g0182541 | 32.812 | 256 | 156 | 7 | 59 | 307 | 34 | 280 | 8.24e-29 | 114 |
| Msa0896550 | MtrunA17_Chr4g0058731 | 29.968 | 317 | 180 | 11 | 49 | 351 | 40 | 328 | 3.32e-28 | 113 |
| Msa0896550 | MtrunA17_Chr6g0470321 | 32.685 | 257 | 156 | 7 | 60 | 307 | 38 | 286 | 3.67e-28 | 112 |
| Msa0896550 | MtrunA17_Chr3g0117241 | 40.000 | 125 | 63 | 3 | 60 | 182 | 38 | 152 | 5.06e-17 | 77.8 |
| Msa0896550 | MtrunA17_Chr6g0469251 | 25.868 | 317 | 186 | 12 | 67 | 359 | 14 | 305 | 4.40e-16 | 78.2 |
| Msa0896550 | MtrunA17_Chr6g0466681 | 27.092 | 251 | 157 | 9 | 62 | 306 | 69 | 299 | 8.62e-16 | 77.8 |
| Msa0896550 | MtrunA17_Chr3g0079561 | 26.316 | 266 | 153 | 11 | 117 | 358 | 14 | 260 | 7.15e-13 | 68.2 |
| Msa0896550 | MtrunA17_Chr8g0349761 | 30.682 | 176 | 93 | 3 | 62 | 214 | 10 | 179 | 1.51e-12 | 67.8 |
| Msa0896550 | MtrunA17_Chr1g0171831 | 28.634 | 227 | 138 | 10 | 53 | 273 | 10 | 218 | 1.67e-12 | 67.0 |
| Msa0896550 | MtrunA17_Chr8g0349771 | 28.261 | 184 | 103 | 3 | 54 | 214 | 1 | 178 | 1.36e-11 | 64.7 |
| Msa0896550 | MtrunA17_Chr8g0349811 | 24.324 | 259 | 136 | 5 | 62 | 269 | 9 | 258 | 1.57e-11 | 64.7 |
| Msa0896550 | MtrunA17_Chr5g0425391 | 24.913 | 289 | 158 | 9 | 61 | 300 | 8 | 286 | 1.61e-11 | 64.7 |
| Msa0896550 | MtrunA17_Chr8g0349801 | 24.904 | 261 | 132 | 7 | 62 | 269 | 9 | 258 | 7.39e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896550 | AT4G27760.1 | 70.292 | 377 | 107 | 2 | 4 | 380 | 5 | 376 | 0.0 | 538 |
| Msa0896550 | AT5G53090.1 | 68.617 | 376 | 116 | 1 | 5 | 380 | 2 | 375 | 1.74e-179 | 503 |
| Msa0896550 | AT5G53100.1 | 65.833 | 360 | 122 | 1 | 17 | 375 | 2 | 361 | 1.17e-163 | 463 |
| Msa0896550 | AT4G23430.2 | 35.409 | 257 | 149 | 6 | 60 | 308 | 30 | 277 | 4.34e-35 | 131 |
| Msa0896550 | AT2G37540.1 | 32.229 | 332 | 180 | 9 | 41 | 364 | 27 | 321 | 4.95e-34 | 129 |
| Msa0896550 | AT4G23420.1 | 35.409 | 257 | 149 | 6 | 60 | 308 | 30 | 277 | 9.74e-34 | 127 |
| Msa0896550 | AT4G23420.2 | 35.409 | 257 | 149 | 6 | 60 | 308 | 30 | 277 | 9.74e-34 | 127 |
| Msa0896550 | AT4G23420.3 | 35.409 | 257 | 149 | 6 | 60 | 308 | 47 | 294 | 1.38e-33 | 127 |
| Msa0896550 | AT4G23430.1 | 35.798 | 257 | 146 | 7 | 60 | 308 | 30 | 275 | 3.32e-33 | 126 |
| Msa0896550 | AT4G23430.4 | 34.646 | 254 | 145 | 7 | 60 | 308 | 30 | 267 | 8.32e-32 | 122 |
| Msa0896550 | AT2G37540.2 | 37.037 | 243 | 123 | 6 | 37 | 271 | 23 | 243 | 2.66e-31 | 120 |
| Msa0896550 | AT4G23420.4 | 38.249 | 217 | 118 | 5 | 60 | 269 | 30 | 237 | 2.83e-31 | 120 |
| Msa0896550 | AT4G23420.5 | 38.249 | 217 | 118 | 5 | 60 | 269 | 30 | 237 | 4.19e-31 | 119 |
| Msa0896550 | AT4G23430.3 | 35.039 | 254 | 142 | 8 | 60 | 308 | 30 | 265 | 6.28e-30 | 117 |
| Msa0896550 | AT4G11410.1 | 30.592 | 304 | 184 | 7 | 60 | 356 | 30 | 313 | 2.56e-29 | 115 |
| Msa0896550 | AT5G50130.9 | 36.170 | 235 | 127 | 7 | 56 | 280 | 33 | 254 | 7.04e-29 | 113 |
| Msa0896550 | AT5G50130.3 | 36.017 | 236 | 127 | 8 | 56 | 280 | 33 | 255 | 2.92e-28 | 111 |
| Msa0896550 | AT5G50130.2 | 35.841 | 226 | 123 | 6 | 56 | 271 | 33 | 246 | 4.62e-28 | 112 |
| Msa0896550 | AT5G50130.1 | 35.683 | 227 | 123 | 7 | 56 | 271 | 33 | 247 | 1.18e-27 | 112 |
| Msa0896550 | AT5G50130.4 | 35.683 | 227 | 123 | 7 | 56 | 271 | 33 | 247 | 2.13e-27 | 110 |
| Msa0896550 | AT4G24050.1 | 32.824 | 262 | 155 | 8 | 57 | 307 | 32 | 283 | 3.78e-27 | 110 |
| Msa0896550 | AT4G11410.2 | 35.616 | 219 | 125 | 5 | 60 | 271 | 30 | 239 | 8.38e-27 | 107 |
| Msa0896550 | AT1G64590.1 | 33.333 | 270 | 163 | 7 | 57 | 317 | 32 | 293 | 1.44e-26 | 108 |
| Msa0896550 | AT4G24050.2 | 35.398 | 226 | 126 | 7 | 57 | 272 | 32 | 247 | 5.82e-26 | 105 |
| Msa0896550 | AT5G50130.8 | 34.978 | 223 | 123 | 6 | 59 | 271 | 3 | 213 | 9.44e-26 | 105 |
| Msa0896550 | AT5G50130.6 | 34.978 | 223 | 123 | 6 | 59 | 271 | 3 | 213 | 1.63e-25 | 105 |
| Msa0896550 | AT5G50130.7 | 34.821 | 224 | 123 | 7 | 59 | 271 | 3 | 214 | 3.50e-25 | 104 |
| Msa0896550 | AT5G50130.5 | 34.821 | 224 | 123 | 7 | 59 | 271 | 3 | 214 | 5.56e-25 | 103 |
| Msa0896550 | AT5G15940.3 | 26.518 | 313 | 191 | 10 | 62 | 355 | 63 | 355 | 1.01e-21 | 95.9 |
| Msa0896550 | AT5G15940.2 | 26.518 | 313 | 191 | 10 | 62 | 355 | 63 | 355 | 1.01e-21 | 95.9 |
| Msa0896550 | AT5G15940.1 | 26.518 | 313 | 191 | 10 | 62 | 355 | 62 | 354 | 1.09e-21 | 95.5 |
| Msa0896550 | AT5G02540.1 | 27.027 | 296 | 183 | 8 | 70 | 355 | 44 | 316 | 4.18e-21 | 93.6 |
| Msa0896550 | AT5G15940.4 | 31.140 | 228 | 134 | 7 | 62 | 274 | 63 | 282 | 6.27e-21 | 92.8 |
| Msa0896550 | AT4G09750.1 | 29.545 | 220 | 141 | 7 | 57 | 274 | 41 | 248 | 1.97e-19 | 88.6 |
| Msa0896550 | AT5G04070.1 | 28.514 | 249 | 144 | 9 | 46 | 278 | 54 | 284 | 3.81e-17 | 82.4 |
| Msa0896550 | AT5G54190.1 | 26.301 | 346 | 206 | 13 | 43 | 358 | 79 | 405 | 7.19e-17 | 82.0 |
| Msa0896550 | AT1G03630.2 | 26.180 | 233 | 135 | 8 | 61 | 267 | 89 | 310 | 1.27e-13 | 72.0 |
| Msa0896550 | AT1G03630.1 | 26.180 | 233 | 135 | 8 | 61 | 267 | 91 | 312 | 1.33e-13 | 72.0 |
| Msa0896550 | AT4G27440.2 | 24.848 | 330 | 194 | 11 | 63 | 358 | 92 | 401 | 3.71e-13 | 70.9 |
| Msa0896550 | AT4G27440.1 | 24.848 | 330 | 194 | 11 | 63 | 358 | 92 | 401 | 3.71e-13 | 70.9 |
Find 98 sgRNAs with CRISPR-Local
Find 455 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAAAGTGTCCTTCATTA+AGG | 0.202218 | 6_1:+86728151 | None:intergenic |
| TATCCAGTTTGAAGAGATTT+TGG | 0.205768 | 6_1:+86729269 | None:intergenic |
| AATGACTTGCTGTGATTCTT+TGG | 0.206626 | 6_1:+86734568 | None:intergenic |
| TTGAAACATCACATGAAGTA+TGG | 0.243951 | 6_1:-86728320 | Msa0896550:CDS |
| GATCTCACTTGTATTGTTAC+TGG | 0.260757 | 6_1:-86734513 | Msa0896550:CDS |
| TACAGTATAGTACTAATTTA+AGG | 0.270748 | 6_1:+86727966 | None:intergenic |
| TGAAGGACACTTTCAATATA+GGG | 0.276925 | 6_1:-86728145 | Msa0896550:three_prime_UTR |
| TTTGCTGCAATGCAGGTTCT+AGG | 0.284199 | 6_1:-86728476 | Msa0896550:intron |
| GACTAGGAGAGCCCCTAATA+AGG | 0.290936 | 6_1:+86731386 | None:intergenic |
| ATGAAGGACACTTTCAATAT+AGG | 0.303450 | 6_1:-86728146 | Msa0896550:three_prime_UTR |
| TGCAGGCAATTGGCAGAATC+AGG | 0.313186 | 6_1:-86732913 | Msa0896550:intron |
| TGCCTAGCAATTGCTTAGTA+TGG | 0.317381 | 6_1:-86728073 | Msa0896550:three_prime_UTR |
| CAGATTGAGTCTGATGGATT+AGG | 0.348042 | 6_1:-86732829 | Msa0896550:CDS |
| CTGAGATCTTTGTCTTTAGT+AGG | 0.367494 | 6_1:+86734741 | None:intergenic |
| CTTCCAAAATCTCTTCAAAC+TGG | 0.376839 | 6_1:-86729272 | Msa0896550:CDS |
| AAAGTTTGGGTTGGATAGAA+TGG | 0.394557 | 6_1:-86734629 | Msa0896550:CDS |
| TTTCTTTAGATGCATCATAT+TGG | 0.399330 | 6_1:-86731228 | Msa0896550:intron |
| TGCTTCTTCTGAAGCATTTG+CGG | 0.403859 | 6_1:+86728350 | None:intergenic |
| GCTTCTTCTGAAGCATTTGC+GGG | 0.407129 | 6_1:+86728351 | None:intergenic |
| ACATTGGTCTGGACAATTCC+AGG | 0.412615 | 6_1:+86730013 | None:intergenic |
| AGAGATGATTGGTCTTTCTT+CGG | 0.418672 | 6_1:-86728286 | Msa0896550:CDS |
| GGAGGTAGATCTTCTCTCAT+TGG | 0.419719 | 6_1:-86731835 | Msa0896550:CDS |
| CGACAATCATGAGAAATATA+CGG | 0.426392 | 6_1:+86728375 | None:intergenic |
| CTCTCCATTATGCAGGCAAT+TGG | 0.427700 | 6_1:-86732923 | Msa0896550:intron |
| TGAGTCTGATGGATTAGGAT+TGG | 0.429241 | 6_1:-86732824 | Msa0896550:CDS |
| TTGAAAGTGTCCTTCATTAA+GGG | 0.430982 | 6_1:+86728152 | None:intergenic |
| CACGCTCTCATTAATAATGC+TGG | 0.431551 | 6_1:-86731762 | Msa0896550:CDS |
| ACTGGTTCCACCAGTGGCAT+TGG | 0.432281 | 6_1:-86734495 | Msa0896550:CDS |
| ATCAGGGGCACATGTTGTTA+TGG | 0.436256 | 6_1:-86732896 | Msa0896550:CDS |
| GGTTGGATAGAATGGTTAAG+AGG | 0.436913 | 6_1:-86734621 | Msa0896550:CDS |
| TTGCAAGGTTTGCTGAAGCT+TGG | 0.446570 | 6_1:-86731806 | Msa0896550:CDS |
| CTTGTGTTAATCGCGTGCTT+TGG | 0.450158 | 6_1:+86728193 | None:intergenic |
| TGAGCATTAAAGATGAAGTA+AGG | 0.453376 | 6_1:+86729236 | None:intergenic |
| GAGTCTGATGGATTAGGATT+GGG | 0.455268 | 6_1:-86732823 | Msa0896550:CDS |
| TGAGAAATATACGGACAAAC+AGG | 0.460128 | 6_1:+86728384 | None:intergenic |
| TGACTGTGGTAAACAAATAG+AGG | 0.464381 | 6_1:-86727912 | Msa0896550:three_prime_UTR |
| GGATAGAATGGTTAAGAGGA+TGG | 0.471707 | 6_1:-86734617 | Msa0896550:CDS |
| AGGAAACAAGAGAGTGAGTG+TGG | 0.472404 | 6_1:+86734761 | None:intergenic |
| GAAGACATGAATGTCACATC+TGG | 0.473158 | 6_1:-86731192 | Msa0896550:CDS |
| AGAAGTATTGAAAGCAAAGC+AGG | 0.473236 | 6_1:+86731418 | None:intergenic |
| AAATACTTACAACATTGGTC+TGG | 0.474641 | 6_1:+86730002 | None:intergenic |
| GCCTAGCAATTGCTTAGTAT+GGG | 0.484352 | 6_1:-86728072 | Msa0896550:three_prime_UTR |
| TCATTAAGGGTGAGTATGTA+GGG | 0.489033 | 6_1:+86728165 | None:intergenic |
| ATTTAACTTCTTCTCCCTCT+AGG | 0.491031 | 6_1:+86728247 | None:intergenic |
| AAAAGAAGCAAAGTTTGGGT+TGG | 0.493221 | 6_1:-86734638 | Msa0896550:CDS |
| TCTCATTGGATTCTGTTGCA+AGG | 0.494951 | 6_1:-86731821 | Msa0896550:CDS |
| ACTAGGAGAGCCCCTAATAA+GGG | 0.497187 | 6_1:+86731387 | None:intergenic |
| TTCATTAAGGGTGAGTATGT+AGG | 0.499375 | 6_1:+86728164 | None:intergenic |
| TTCATCTTTAATGCTCAAGA+AGG | 0.502521 | 6_1:-86729230 | Msa0896550:intron |
| TTTCCAAATACTTACAACAT+TGG | 0.513112 | 6_1:+86729997 | None:intergenic |
| AGTCAATTTCACCTATTACA+AGG | 0.514979 | 6_1:+86727930 | None:intergenic |
| TTGATTGGTGGTAATGGCAT+AGG | 0.516233 | 6_1:+86734537 | None:intergenic |
| GAAGAAGTTAAATGTCGTTA+CGG | 0.519935 | 6_1:-86728237 | Msa0896550:CDS |
| ATTGTTACTGGTTCCACCAG+TGG | 0.523988 | 6_1:-86734501 | Msa0896550:CDS |
| GTCAATTTCACCTATTACAA+GGG | 0.524272 | 6_1:+86727931 | None:intergenic |
| TACACATAATACACTGATAC+CGG | 0.524375 | 6_1:+86730039 | None:intergenic |
| CCCCATACTAAGCAATTGCT+AGG | 0.525913 | 6_1:+86728071 | None:intergenic |
| AGTGTATTATGTGTATCGCC+TGG | 0.529462 | 6_1:-86730031 | Msa0896550:CDS |
| GGCTGTGAGGAACACAAAGC+GGG | 0.536602 | 6_1:-86732875 | Msa0896550:CDS |
| TACATACTCACCCTTAATGA+AGG | 0.541441 | 6_1:-86728162 | Msa0896550:three_prime_UTR |
| TATGAAATACCAACCTCCAA+TGG | 0.543030 | 6_1:+86731731 | None:intergenic |
| TGAAACATCACATGAAGTAT+GGG | 0.543372 | 6_1:-86728319 | Msa0896550:CDS |
| AGATCATTGATTGGTGGTAA+TGG | 0.543952 | 6_1:+86734531 | None:intergenic |
| CAGACTCAATCTGCCACTTG+TGG | 0.545618 | 6_1:+86732839 | None:intergenic |
| TCCCTCTAGGAACTTCTCTA+CGG | 0.554434 | 6_1:+86728260 | None:intergenic |
| GCAGGCAATTGGCAGAATCA+GGG | 0.555359 | 6_1:-86732912 | Msa0896550:intron |
| TGATGGATTAGGATTGGGTA+TGG | 0.559208 | 6_1:-86732818 | Msa0896550:CDS |
| AAGTGGCAGATTGAGTCTGA+TGG | 0.562018 | 6_1:-86732835 | Msa0896550:CDS |
| ATACAAGTGAGATCATTGAT+TGG | 0.564907 | 6_1:+86734522 | None:intergenic |
| ACACTGATACCGGCTTCAGC+AGG | 0.565197 | 6_1:+86730049 | None:intergenic |
| AAGCGACTACCTGCTGAAGC+CGG | 0.571716 | 6_1:-86730058 | Msa0896550:CDS |
| AATTGTTGAAATCAGATGAA+TGG | 0.573431 | 6_1:-86728407 | Msa0896550:CDS |
| GCATTGGTCTTGAAATTGCA+AGG | 0.585583 | 6_1:-86734479 | Msa0896550:intron |
| TTGGCTTGTCCAGGTGATGG+AGG | 0.589138 | 6_1:-86731853 | Msa0896550:intron |
| TTCAAGACCAATGCCACTGG+TGG | 0.589915 | 6_1:+86734488 | None:intergenic |
| AATTTCAAGACCAATGCCAC+TGG | 0.590029 | 6_1:+86734485 | None:intergenic |
| CTCAAGTAGCAAGTTAGCAC+AGG | 0.592628 | 6_1:-86731139 | Msa0896550:intron |
| CAGGCAATTGGCAGAATCAG+GGG | 0.604548 | 6_1:-86732911 | Msa0896550:CDS |
| GCCGTAGAGAAGTTCCTAGA+GGG | 0.611012 | 6_1:-86728261 | Msa0896550:CDS |
| TCACAATACTCTGAAACTTG+AGG | 0.611981 | 6_1:+86728429 | None:intergenic |
| GACTGTGGTAAACAAATAGA+GGG | 0.612444 | 6_1:-86727911 | Msa0896550:three_prime_UTR |
| GAAGGACACTTTCAATATAG+GGG | 0.613040 | 6_1:-86728144 | Msa0896550:three_prime_UTR |
| ATACTCTGAAACTTGAGGAT+CGG | 0.614543 | 6_1:+86728434 | None:intergenic |
| CTCACATAAACACAGAAACA+TGG | 0.625781 | 6_1:-86734706 | Msa0896550:intron |
| TAGAGGGTTCTATCTTACAA+TGG | 0.632834 | 6_1:-86727895 | Msa0896550:three_prime_UTR |
| CAAGTGAGATCATTGATTGG+TGG | 0.634031 | 6_1:+86734525 | None:intergenic |
| CCTAGCAATTGCTTAGTATG+GGG | 0.635633 | 6_1:-86728071 | Msa0896550:three_prime_UTR |
| AAGGACACTTTCAATATAGG+GGG | 0.636088 | 6_1:-86728143 | Msa0896550:three_prime_UTR |
| GGAGAGCCCCTAATAAGGGA+TGG | 0.640568 | 6_1:+86731391 | None:intergenic |
| TTATTAATGAGAGCGTGCAA+AGG | 0.655244 | 6_1:+86731768 | None:intergenic |
| TTCACATTCACAATTCGACT+AGG | 0.656170 | 6_1:+86731370 | None:intergenic |
| GGGTATGGCACTCAATGTCG+AGG | 0.660027 | 6_1:-86732803 | Msa0896550:intron |
| CTAATGATTTGATCCACAAG+TGG | 0.662421 | 6_1:-86732852 | Msa0896550:CDS |
| TGGCTGTGAGGAACACAAAG+CGG | 0.666766 | 6_1:-86732876 | Msa0896550:CDS |
| TGCTAGGCATCACAATCACA+AGG | 0.669042 | 6_1:+86728087 | None:intergenic |
| CACATGTTGTTATGGCTGTG+AGG | 0.673118 | 6_1:-86732888 | Msa0896550:CDS |
| TGCCGTAGAGAAGTTCCTAG+AGG | 0.679397 | 6_1:-86728262 | Msa0896550:CDS |
| GTAATAGGTGAAATTGACTG+TGG | 0.722553 | 6_1:-86727926 | Msa0896550:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATGTTTTAAGAATAAATA+GGG | - | chr6_1:86730003-86730022 | Msa0896550:intron | 10.0% |
| !! | ATTTAAATAAACATTCAAAA+AGG | + | chr6_1:86730512-86730531 | None:intergenic | 10.0% |
| !! | TGTATAAAACTTAATAAAAT+AGG | + | chr6_1:86730580-86730599 | None:intergenic | 10.0% |
| !!! | ATAATGTTATTAATAGTTTT+TGG | - | chr6_1:86730682-86730701 | Msa0896550:intron | 10.0% |
| !!! | TCAATTATTTTATGAATAAA+AGG | + | chr6_1:86732277-86732296 | None:intergenic | 10.0% |
| !! | AAAAAGATGTATAATAAATA+GGG | - | chr6_1:86733825-86733844 | Msa0896550:intron | 10.0% |
| !!! | TTCTTTTTATTCTTCAATAA+TGG | + | chr6_1:86728002-86728021 | None:intergenic | 15.0% |
| !!! | TGTTTTTTCTTTTTGATTTT+TGG | - | chr6_1:86728456-86728475 | Msa0896550:CDS | 15.0% |
| !!! | AAAAATTTGATCTTTGTTAT+TGG | - | chr6_1:86728521-86728540 | Msa0896550:intron | 15.0% |
| !!! | AAAATTTGATCTTTGTTATT+GGG | - | chr6_1:86728522-86728541 | Msa0896550:intron | 15.0% |
| !! | ATTCATCTTTAATAAATCAA+TGG | - | chr6_1:86729588-86729607 | Msa0896550:intron | 15.0% |
| !!! | GTTATGTTTTAAGAATAAAT+AGG | - | chr6_1:86730002-86730021 | Msa0896550:intron | 15.0% |
| !!! | TATGTTTTAAGAATAAATAG+GGG | - | chr6_1:86730004-86730023 | Msa0896550:intron | 15.0% |
| !! | ATTATTTATTCTGTAATCAA+AGG | - | chr6_1:86730120-86730139 | Msa0896550:intron | 15.0% |
| !! | TTATTTATTCTGTAATCAAA+GGG | - | chr6_1:86730121-86730140 | Msa0896550:intron | 15.0% |
| !!! | TGAAACTTAAATTTTTTTAG+AGG | - | chr6_1:86730309-86730328 | Msa0896550:intron | 15.0% |
| !!! | TATTTTTTTCACAATAGATT+GGG | + | chr6_1:86730419-86730438 | None:intergenic | 15.0% |
| !! | TAAAATTTACAATTGTACAT+AGG | - | chr6_1:86731337-86731356 | Msa0896550:intron | 15.0% |
| !! | TGATAAAAAAGAAGAAATAA+AGG | + | chr6_1:86732411-86732430 | None:intergenic | 15.0% |
| !!! | ATGTTTAATTTAGTTTTCAA+TGG | - | chr6_1:86732770-86732789 | Msa0896550:intron | 15.0% |
| !!! | TGTTTAATTTAGTTTTCAAT+GGG | - | chr6_1:86732771-86732790 | Msa0896550:intron | 15.0% |
| !!! | ATATTTAAAACAAACATTCA+GGG | + | chr6_1:86732807-86732826 | None:intergenic | 15.0% |
| !!! | AATATTTAAAACAAACATTC+AGG | + | chr6_1:86732808-86732827 | None:intergenic | 15.0% |
| !!! | TAATGCAAACTAATTTTTAT+AGG | + | chr6_1:86732884-86732903 | None:intergenic | 15.0% |
| !! | AAAGTAGATAAATGAAAATT+AGG | - | chr6_1:86733042-86733061 | Msa0896550:intron | 15.0% |
| !!! | TAATTTTACCATATAATTTC+TGG | - | chr6_1:86733253-86733272 | Msa0896550:intron | 15.0% |
| !! | GAAAAAGATGTATAATAAAT+AGG | - | chr6_1:86733824-86733843 | Msa0896550:intron | 15.0% |
| !! | AAAAGATGTATAATAAATAG+GGG | - | chr6_1:86733826-86733845 | Msa0896550:intron | 15.0% |
| !! | AAAGAAATAATTAATGTAGT+TGG | - | chr6_1:86733858-86733877 | Msa0896550:intron | 15.0% |
| !! | AATAAAAAGAAGCAAAGTTT+GGG | - | chr6_1:86728011-86728030 | Msa0896550:three_prime_UTR | 20.0% |
| !! | ATTGATCAGAAAAAACAAAA+GGG | + | chr6_1:86728208-86728227 | None:intergenic | 20.0% |
| !! | AATTGATCAGAAAAAACAAA+AGG | + | chr6_1:86728209-86728228 | None:intergenic | 20.0% |
| !!! | TTGTTTTTTCTGATCAATTT+TGG | - | chr6_1:86728210-86728229 | Msa0896550:exon | 20.0% |
| !!! | TTTTGATTGGATATTATTTG+TGG | - | chr6_1:86728234-86728253 | Msa0896550:CDS | 20.0% |
| !! | TTTGATTGGATATTATTTGT+GGG | - | chr6_1:86728235-86728254 | Msa0896550:CDS | 20.0% |
| !! | AAAATTTGATCTTTGTAACT+TGG | - | chr6_1:86728276-86728295 | Msa0896550:CDS | 20.0% |
| !! | AAATTTGATCTTTGTAACTT+GGG | - | chr6_1:86728277-86728296 | Msa0896550:CDS | 20.0% |
| !!! | GAATTTTGATTTTTGTAACT+CGG | - | chr6_1:86728386-86728405 | Msa0896550:CDS | 20.0% |
| !!! | AATTTTGATTTTTGTAACTC+GGG | - | chr6_1:86728387-86728406 | Msa0896550:CDS | 20.0% |
| !! | TTGTGTTTGAATATTAATTG+TGG | - | chr6_1:86728480-86728499 | Msa0896550:intron | 20.0% |
| !! | TGTGTTTGAATATTAATTGT+GGG | - | chr6_1:86728481-86728500 | Msa0896550:intron | 20.0% |
| !! | TGATTTATGATAGAACATTA+TGG | + | chr6_1:86729227-86729246 | None:intergenic | 20.0% |
| !!! | TAGTAGTTTTTTCTATAAAG+GGG | + | chr6_1:86729389-86729408 | None:intergenic | 20.0% |
| !!! | GTAGTAGTTTTTTCTATAAA+GGG | + | chr6_1:86729390-86729409 | None:intergenic | 20.0% |
| !!! | TGTAGTAGTTTTTTCTATAA+AGG | + | chr6_1:86729391-86729410 | None:intergenic | 20.0% |
| !! | TCATAAACAATGATGTTTAA+TGG | - | chr6_1:86729469-86729488 | Msa0896550:intron | 20.0% |
| !!! | GATTTTTTTAATCACTTTAG+AGG | + | chr6_1:86729536-86729555 | None:intergenic | 20.0% |
| !! | ATTATTAATTAAGTCAGTAG+TGG | - | chr6_1:86729976-86729995 | Msa0896550:intron | 20.0% |
| !! | TTATTAATTAAGTCAGTAGT+GGG | - | chr6_1:86729977-86729996 | Msa0896550:intron | 20.0% |
| !! | TGATATAGAAGAATGAAATA+GGG | + | chr6_1:86730152-86730171 | None:intergenic | 20.0% |
| !! | TATTACTATCTCAAAAACTT+TGG | - | chr6_1:86730181-86730200 | Msa0896550:intron | 20.0% |
| !!! | TAAATTTTTTTAGAGGAATG+TGG | - | chr6_1:86730316-86730335 | Msa0896550:intron | 20.0% |
| !!! | GTATTTTTTTCACAATAGAT+TGG | + | chr6_1:86730420-86730439 | None:intergenic | 20.0% |
| !! | AATAAACATTCAAAAAGGAT+AGG | + | chr6_1:86730507-86730526 | None:intergenic | 20.0% |
| !!! | TTTTATACAATCTGAATCTA+AGG | - | chr6_1:86730591-86730610 | Msa0896550:intron | 20.0% |
| !!! | ATTTTAGTTCATAAGCAATT+AGG | - | chr6_1:86730739-86730758 | Msa0896550:intron | 20.0% |
| !!! | TTTTTGTTAACTAGATTTTC+AGG | - | chr6_1:86731060-86731079 | Msa0896550:intron | 20.0% |
| !!! | AAAAAGAAAATTTTCTAGTG+TGG | - | chr6_1:86731484-86731503 | Msa0896550:intron | 20.0% |
| !! | AACTATATACATAACTTCAT+TGG | + | chr6_1:86731604-86731623 | None:intergenic | 20.0% |
| !! | TTGAAGTTATGAATGAAAAA+GGG | - | chr6_1:86732528-86732547 | Msa0896550:intron | 20.0% |
| !! | GAATAAAATGATTAAGTTAC+AGG | + | chr6_1:86732721-86732740 | None:intergenic | 20.0% |
| !!! | TATTTAAAACAAACATTCAG+GGG | + | chr6_1:86732806-86732825 | None:intergenic | 20.0% |
| !! | TATTATGACCAGAAATTATA+TGG | + | chr6_1:86733264-86733283 | None:intergenic | 20.0% |
| !!! | TAATTTCTGGTCATAATATA+CGG | - | chr6_1:86733266-86733285 | Msa0896550:intron | 20.0% |
| !! | ATTATTGAATTATGATGTGA+AGG | + | chr6_1:86733599-86733618 | None:intergenic | 20.0% |
| !! | GACAAAAAAAATTCTCAAAA+GGG | - | chr6_1:86733908-86733927 | Msa0896550:intron | 20.0% |
| !!! | GTTAATGTACAAAAACTTTT+CGG | + | chr6_1:86734622-86734641 | None:intergenic | 20.0% |
| !! | TACAGTATAGTACTAATTTA+AGG | + | chr6_1:86734690-86734709 | None:intergenic | 20.0% |
| ! | GAATAAAAAGAAGCAAAGTT+TGG | - | chr6_1:86728010-86728029 | Msa0896550:three_prime_UTR | 25.0% |
| !!! | GATCAATTTTGGTTTTTGAT+TGG | - | chr6_1:86728221-86728240 | Msa0896550:CDS | 25.0% |
| ! | TTGATTGGATATTATTTGTG+GGG | - | chr6_1:86728236-86728255 | Msa0896550:CDS | 25.0% |
| ! | AATTTGATCTTTGTAACTTG+GGG | - | chr6_1:86728278-86728297 | Msa0896550:CDS | 25.0% |
| ! | TTGTTTGATTATGGAGAAAT+GGG | - | chr6_1:86728310-86728329 | Msa0896550:CDS | 25.0% |
| ! | AAAAACATGAGAGCAAAAAA+GGG | + | chr6_1:86728443-86728462 | None:intergenic | 25.0% |
| ! | AAAAAACATGAGAGCAAAAA+AGG | + | chr6_1:86728444-86728463 | None:intergenic | 25.0% |
| ! | GTGTTTGAATATTAATTGTG+GGG | - | chr6_1:86728482-86728501 | Msa0896550:intron | 25.0% |
| !!! | TTGCTGTTTTGATTATGATT+AGG | - | chr6_1:86728552-86728571 | Msa0896550:intron | 25.0% |
| !!! | TGCTGTTTTGATTATGATTA+GGG | - | chr6_1:86728553-86728572 | Msa0896550:intron | 25.0% |
| !! | ACTAGAGTTTAAGGTAATTA+TGG | - | chr6_1:86728878-86728897 | Msa0896550:intron | 25.0% |
| !! | TTAATGGTTGATCATTTTAG+TGG | - | chr6_1:86729485-86729504 | Msa0896550:intron | 25.0% |
| ! | TTAAGTGATGAACACTTTAT+AGG | - | chr6_1:86729634-86729653 | Msa0896550:intron | 25.0% |
| !!! | TTGAAAATGTGTTTAAGTTG+TGG | - | chr6_1:86729673-86729692 | Msa0896550:intron | 25.0% |
| ! | TAAGATATCTAACAGATAGT+TGG | + | chr6_1:86729889-86729908 | None:intergenic | 25.0% |
| ! | CTGATATAGAAGAATGAAAT+AGG | + | chr6_1:86730153-86730172 | None:intergenic | 25.0% |
| !! | AAAAATTTAAGTTTCAGCAC+AGG | + | chr6_1:86730305-86730324 | None:intergenic | 25.0% |
| !!! | TTTTCTGGTATTAAGGAATA+AGG | + | chr6_1:86730355-86730374 | None:intergenic | 25.0% |
| !!! | ATCAGCTTTCATTTTGTTTT+CGG | - | chr6_1:86730644-86730663 | Msa0896550:intron | 25.0% |
| !!! | CATATGTTGTTGATGAATTT+TGG | - | chr6_1:86730941-86730960 | Msa0896550:intron | 25.0% |
| ! | TGATGCATCTAAAGAAAAAA+GGG | + | chr6_1:86731422-86731441 | None:intergenic | 25.0% |
| ! | ATGATGCATCTAAAGAAAAA+AGG | + | chr6_1:86731423-86731442 | None:intergenic | 25.0% |
| ! | TTTCTTTAGATGCATCATAT+TGG | - | chr6_1:86731425-86731444 | Msa0896550:CDS | 25.0% |
| ! | TTATTAGTGAAGAAACTTTC+AGG | + | chr6_1:86731571-86731590 | None:intergenic | 25.0% |
| !! | CAATTTTCTTAACTCATTAC+CGG | + | chr6_1:86731912-86731931 | None:intergenic | 25.0% |
| !! | AGTATATACAGTTTCCATTT+TGG | - | chr6_1:86732296-86732315 | Msa0896550:intron | 25.0% |
| !! | TGTTGTTCTTTCCTTTTTAA+TGG | - | chr6_1:86732365-86732384 | Msa0896550:intron | 25.0% |
| ! | ACAAATTGAGTCCATTAAAA+AGG | + | chr6_1:86732379-86732398 | None:intergenic | 25.0% |
| ! | CTTGAAGTTATGAATGAAAA+AGG | - | chr6_1:86732527-86732546 | Msa0896550:intron | 25.0% |
| ! | TGAAGTTATGAATGAAAAAG+GGG | - | chr6_1:86732529-86732548 | Msa0896550:intron | 25.0% |
| ! | TTTCCAAATACTTACAACAT+TGG | + | chr6_1:86732659-86732678 | None:intergenic | 25.0% |
| !! | TTCCTTTGATTTAGTAATAC+AGG | - | chr6_1:86732738-86732757 | Msa0896550:intron | 25.0% |
| !! | TCCTTTGATTTAGTAATACA+GGG | - | chr6_1:86732739-86732758 | Msa0896550:intron | 25.0% |
| !! | ATTTAAAACAAACATTCAGG+GGG | + | chr6_1:86732805-86732824 | None:intergenic | 25.0% |
| !! | ATTTTGCCTCAGTTATTAAT+CGG | + | chr6_1:86733125-86733144 | None:intergenic | 25.0% |
| !!! | ATTTTGTGTGTTGGTTTAAA+AGG | - | chr6_1:86733166-86733185 | Msa0896550:intron | 25.0% |
| ! | AAGAAAAGAATGAACGAATA+AGG | + | chr6_1:86733489-86733508 | None:intergenic | 25.0% |
| ! | TGCTCGAAATACTAAAAATT+TGG | + | chr6_1:86733625-86733644 | None:intergenic | 25.0% |
| !!! | TTCCCGTTATTTTTTCAAAA+GGG | + | chr6_1:86733685-86733704 | None:intergenic | 25.0% |
| !!! | ATTCCCGTTATTTTTTCAAA+AGG | + | chr6_1:86733686-86733705 | None:intergenic | 25.0% |
| ! | GGACAAAAAAAATTCTCAAA+AGG | - | chr6_1:86733907-86733926 | Msa0896550:intron | 25.0% |
| !! | TCAAAAGGGTCTTATAATTA+GGG | - | chr6_1:86733922-86733941 | Msa0896550:intron | 25.0% |
| ! | AATTGTTGAAATCAGATGAA+TGG | - | chr6_1:86734246-86734265 | Msa0896550:intron | 25.0% |
| ! | GAAAAAACATTAGAGATGAT+TGG | - | chr6_1:86734356-86734375 | Msa0896550:intron | 25.0% |
| ATACAAGTGAGATCATTGAT+TGG | + | chr6_1:86728134-86728153 | None:intergenic | 30.0% | |
| !! | TGGTTGTTGTTGTTTGATTA+TGG | - | chr6_1:86728301-86728320 | Msa0896550:CDS | 30.0% |
| GTTGTTTGATTATGGAGAAA+TGG | - | chr6_1:86728309-86728328 | Msa0896550:CDS | 30.0% | |
| !!! | GTGTTGTTTTTGGGTAATTA+TGG | - | chr6_1:86728353-86728372 | Msa0896550:CDS | 30.0% |
| !!! | GCATTGGTTTTGAAATTGAT+AGG | - | chr6_1:86728415-86728434 | Msa0896550:CDS | 30.0% |
| ! | GAATATTAATTGTGGGGTTT+TGG | - | chr6_1:86728488-86728507 | Msa0896550:intron | 30.0% |
| !! | TTTGATCTTTGTTATTGGGT+TGG | - | chr6_1:86728526-86728545 | Msa0896550:intron | 30.0% |
| TGATTATGATTAGGGTGAAA+TGG | - | chr6_1:86728561-86728580 | Msa0896550:intron | 30.0% | |
| GATTATGATTAGGGTGAAAT+GGG | - | chr6_1:86728562-86728581 | Msa0896550:intron | 30.0% | |
| GAATTCAGTTAGAGTTACAA+TGG | - | chr6_1:86728708-86728727 | Msa0896550:intron | 30.0% | |
| AAAAATTCGACCTTTGTAAC+TGG | - | chr6_1:86728946-86728965 | Msa0896550:intron | 30.0% | |
| AAAATTCGACCTTTGTAACT+GGG | - | chr6_1:86728947-86728966 | Msa0896550:intron | 30.0% | |
| ATTTATGTGGCTGTTGTTAT+AGG | - | chr6_1:86729027-86729046 | Msa0896550:intron | 30.0% | |
| ATGTAAATGAGGGACATTTA+TGG | - | chr6_1:86729057-86729076 | Msa0896550:intron | 30.0% | |
| TCTTCATTGAAGTGTAAATG+AGG | - | chr6_1:86729081-86729100 | Msa0896550:intron | 30.0% | |
| CTTCATTGAAGTGTAAATGA+GGG | - | chr6_1:86729082-86729101 | Msa0896550:intron | 30.0% | |
| ! | GTGTGTGTATGAATTTTGTT+TGG | + | chr6_1:86729272-86729291 | None:intergenic | 30.0% |
| !!! | TGGAGTTTGACAAGTTTTTT+TGG | - | chr6_1:86729693-86729712 | Msa0896550:intron | 30.0% |
| !!! | GGAGTTTGACAAGTTTTTTT+GGG | - | chr6_1:86729694-86729713 | Msa0896550:intron | 30.0% |
| !!! | GAGTTTGACAAGTTTTTTTG+GGG | - | chr6_1:86729695-86729714 | Msa0896550:intron | 30.0% |
| !!! | AGTTTGACAAGTTTTTTTGG+GGG | - | chr6_1:86729696-86729715 | Msa0896550:intron | 30.0% |
| AGTAGTTAATTATGCAGCTA+TGG | - | chr6_1:86729943-86729962 | Msa0896550:intron | 30.0% | |
| ! | ATCTCAAAAACTTTGGAAGT+TGG | - | chr6_1:86730188-86730207 | Msa0896550:intron | 30.0% |
| ! | TCTCAAAAACTTTGGAAGTT+GGG | - | chr6_1:86730189-86730208 | Msa0896550:intron | 30.0% |
| !!! | ATTTTTTTAGAGGAATGTGG+CGG | - | chr6_1:86730319-86730338 | Msa0896550:intron | 30.0% |
| !! | ATTGGGATTTTCTGGTATTA+AGG | + | chr6_1:86730362-86730381 | None:intergenic | 30.0% |
| ! | TCATTTTATCGCACTAGATT+GGG | + | chr6_1:86730379-86730398 | None:intergenic | 30.0% |
| ! | TTCATTTTATCGCACTAGAT+TGG | + | chr6_1:86730380-86730399 | None:intergenic | 30.0% |
| CTTTACACAGTAATGAGTAA+TGG | + | chr6_1:86730484-86730503 | None:intergenic | 30.0% | |
| ATAAGCAATTAGGCATGATT+TGG | - | chr6_1:86730749-86730768 | Msa0896550:intron | 30.0% | |
| CAGAATGATAGACAAAAGAT+AGG | + | chr6_1:86730967-86730986 | None:intergenic | 30.0% | |
| ATTCTGAATTGAATCAGTGA+CGG | - | chr6_1:86730981-86731000 | Msa0896550:intron | 30.0% | |
| AGTCATAGATATTTCGAGAT+TGG | - | chr6_1:86731091-86731110 | Msa0896550:intron | 30.0% | |
| !! | CCATCTTTTGAAAACTTTTG+TGG | + | chr6_1:86731181-86731200 | None:intergenic | 30.0% |
| ! | CCACAAAAGTTTTCAAAAGA+TGG | - | chr6_1:86731178-86731197 | Msa0896550:CDS | 30.0% |
| AAATTGCAAGAGACTTACAA+TGG | + | chr6_1:86731311-86731330 | None:intergenic | 30.0% | |
| AAAGAAAACTTTGACATGTC+TGG | + | chr6_1:86731369-86731388 | None:intergenic | 30.0% | |
| GATGCATCTAAAGAAAAAAG+GGG | + | chr6_1:86731421-86731440 | None:intergenic | 30.0% | |
| !! | AAGAAAATTTTCTAGTGTGG+TGG | - | chr6_1:86731487-86731506 | Msa0896550:intron | 30.0% |
| !! | AGAAAATTTTCTAGTGTGGT+GGG | - | chr6_1:86731488-86731507 | Msa0896550:intron | 30.0% |
| !! | CTTGTTGAAGGTTTTGATAA+CGG | - | chr6_1:86731545-86731564 | Msa0896550:intron | 30.0% |
| GACAATGCATAAAATATGCA+AGG | - | chr6_1:86731706-86731725 | Msa0896550:intron | 30.0% | |
| !!! | AACAGTGCACAACTTTTTTT+TGG | + | chr6_1:86731757-86731776 | None:intergenic | 30.0% |
| !!! | TTGCTTTTGTTTTCCATTCT+TGG | + | chr6_1:86732067-86732086 | None:intergenic | 30.0% |
| !!! | ACAGTTTCCATTTTGGTTTA+TGG | - | chr6_1:86732303-86732322 | Msa0896550:intron | 30.0% |
| !!! | CAGTTTCCATTTTGGTTTAT+GGG | - | chr6_1:86732304-86732323 | Msa0896550:intron | 30.0% |
| CAATTATACCAAGGAAAGTT+AGG | + | chr6_1:86732333-86732352 | None:intergenic | 30.0% | |
| AACAAGATGCAATTATACCA+AGG | + | chr6_1:86732342-86732361 | None:intergenic | 30.0% | |
| TCACTTGAAAATGAATTGCT+TGG | - | chr6_1:86732493-86732512 | Msa0896550:intron | 30.0% | |
| TTATGAATGAAAAAGGGGTT+TGG | - | chr6_1:86732534-86732553 | Msa0896550:intron | 30.0% | |
| TACACATAATACACTGATAC+CGG | + | chr6_1:86732617-86732636 | None:intergenic | 30.0% | |
| AAATACTTACAACATTGGTC+TGG | + | chr6_1:86732654-86732673 | None:intergenic | 30.0% | |
| AGACCAATGTTGTAAGTATT+TGG | - | chr6_1:86732653-86732672 | Msa0896550:intron | 30.0% | |
| TCCCTGTATTACTAAATCAA+AGG | + | chr6_1:86732743-86732762 | None:intergenic | 30.0% | |
| !! | TTAGTTTTCAATGGGATATC+CGG | - | chr6_1:86732779-86732798 | Msa0896550:intron | 30.0% |
| GATTAATAACTGAGGCAAAA+TGG | - | chr6_1:86733124-86733143 | Msa0896550:intron | 30.0% | |
| ! | ATTTCTCACATTTTGTGTGT+TGG | - | chr6_1:86733157-86733176 | Msa0896550:intron | 30.0% |
| !!! | CACCTATTTGTTTTAGAGTT+TGG | - | chr6_1:86733202-86733221 | Msa0896550:intron | 30.0% |
| !! | AGCCAAACTCTAAAACAAAT+AGG | + | chr6_1:86733207-86733226 | None:intergenic | 30.0% |
| ! | TATCCAGTTTGAAGAGATTT+TGG | + | chr6_1:86733387-86733406 | None:intergenic | 30.0% |
| TGAGCATTAAAGATGAAGTA+AGG | + | chr6_1:86733420-86733439 | None:intergenic | 30.0% | |
| TTCATCTTTAATGCTCAAGA+AGG | - | chr6_1:86733423-86733442 | Msa0896550:intron | 30.0% | |
| AGTTGTATCTACTCAATCTA+TGG | + | chr6_1:86733533-86733552 | None:intergenic | 30.0% | |
| TCAAAAGGGTCCTATAATTA+GGG | + | chr6_1:86733671-86733690 | None:intergenic | 30.0% | |
| TTCAAAAGGGTCCTATAATT+AGG | + | chr6_1:86733672-86733691 | None:intergenic | 30.0% | |
| !! | GGACCCTTTTGAAAAAATAA+CGG | - | chr6_1:86733679-86733698 | Msa0896550:intron | 30.0% |
| !! | GACCCTTTTGAAAAAATAAC+GGG | - | chr6_1:86733680-86733699 | Msa0896550:intron | 30.0% |
| ! | AATAACGGGAATTAAGATAG+TGG | - | chr6_1:86733694-86733713 | Msa0896550:intron | 30.0% |
| !! | TTTTATCCTTTAAGAGAGAG+AGG | - | chr6_1:86733760-86733779 | Msa0896550:intron | 30.0% |
| ! | TTTATCCTTTAAGAGAGAGA+GGG | - | chr6_1:86733761-86733780 | Msa0896550:intron | 30.0% |
| AATGTAGTTGGAAATAGCAT+AGG | - | chr6_1:86733870-86733889 | Msa0896550:intron | 30.0% | |
| ATGTAGTTGGAAATAGCATA+GGG | - | chr6_1:86733871-86733890 | Msa0896550:intron | 30.0% | |
| ! | CTCAAAAGGGTCTTATAATT+AGG | - | chr6_1:86733921-86733940 | Msa0896550:intron | 30.0% |
| CATGTATTGTGAAACAATAG+CGG | + | chr6_1:86734009-86734028 | None:intergenic | 30.0% | |
| !! | TAGTACAAAGTGTTGTCAAT+TGG | - | chr6_1:86734032-86734051 | Msa0896550:intron | 30.0% |
| CGACAATCATGAGAAATATA+CGG | + | chr6_1:86734281-86734300 | None:intergenic | 30.0% | |
| TTGAAACATCACATGAAGTA+TGG | - | chr6_1:86734333-86734352 | Msa0896550:intron | 30.0% | |
| TGAAACATCACATGAAGTAT+GGG | - | chr6_1:86734334-86734353 | Msa0896550:intron | 30.0% | |
| GAAGAAGTTAAATGTCGTTA+CGG | - | chr6_1:86734416-86734435 | Msa0896550:intron | 30.0% | |
| !! | TTGAAAGTGTCCTTCATTAA+GGG | + | chr6_1:86734504-86734523 | None:intergenic | 30.0% |
| !! | ATTGAAAGTGTCCTTCATTA+AGG | + | chr6_1:86734505-86734524 | None:intergenic | 30.0% |
| ATGAAGGACACTTTCAATAT+AGG | - | chr6_1:86734507-86734526 | Msa0896550:CDS | 30.0% | |
| TGAAGGACACTTTCAATATA+GGG | - | chr6_1:86734508-86734527 | Msa0896550:CDS | 30.0% | |
| AGGTCAAAAACACTTGTTTA+AGG | + | chr6_1:86734670-86734689 | None:intergenic | 30.0% | |
| !!! | TGTATTTTGACCCTTGTAAT+AGG | - | chr6_1:86734712-86734731 | Msa0896550:intron | 30.0% |
| GTCAATTTCACCTATTACAA+GGG | + | chr6_1:86734725-86734744 | None:intergenic | 30.0% | |
| AGTCAATTTCACCTATTACA+AGG | + | chr6_1:86734726-86734745 | None:intergenic | 30.0% | |
| CTGAGATCTTTGTCTTTAGT+AGG | + | chr6_1:86727915-86727934 | None:intergenic | 35.0% | |
| CTCACATAAACACAGAAACA+TGG | - | chr6_1:86727947-86727966 | Msa0896550:three_prime_UTR | 35.0% | |
| AAAAGAAGCAAAGTTTGGGT+TGG | - | chr6_1:86728015-86728034 | Msa0896550:three_prime_UTR | 35.0% | |
| !! | AAAGTTTGGGTTGGATAGAA+TGG | - | chr6_1:86728024-86728043 | Msa0896550:three_prime_UTR | 35.0% |
| !! | AATGACTTGCTGTGATTCTT+TGG | + | chr6_1:86728088-86728107 | None:intergenic | 35.0% |
| ! | AGATCATTGATTGGTGGTAA+TGG | + | chr6_1:86728125-86728144 | None:intergenic | 35.0% |
| GATCTCACTTGTATTGTTAC+TGG | - | chr6_1:86728140-86728159 | Msa0896550:three_prime_UTR | 35.0% | |
| ! | TATGGAGAAATGGGTCATTT+TGG | - | chr6_1:86728319-86728338 | Msa0896550:CDS | 35.0% |
| !! | AAATGGGTCATTTTGGAAAG+TGG | - | chr6_1:86728326-86728345 | Msa0896550:CDS | 35.0% |
| !! | AATGGGTCATTTTGGAAAGT+GGG | - | chr6_1:86728327-86728346 | Msa0896550:CDS | 35.0% |
| ! | TTGATTTTTGTAACTCGGGT+TGG | - | chr6_1:86728391-86728410 | Msa0896550:CDS | 35.0% |
| TAGGGTGAAATGGGTAATAT+TGG | - | chr6_1:86728571-86728590 | Msa0896550:intron | 35.0% | |
| AGGGTGAAATGGGTAATATT+GGG | - | chr6_1:86728572-86728591 | Msa0896550:intron | 35.0% | |
| AAATGGGTAATATTGGGAAC+TGG | - | chr6_1:86728578-86728597 | Msa0896550:intron | 35.0% | |
| AATGGGTAATATTGGGAACT+GGG | - | chr6_1:86728579-86728598 | Msa0896550:intron | 35.0% | |
| !!! | ACTGGGTAGGTGTATTTTTT+TGG | - | chr6_1:86728596-86728615 | Msa0896550:intron | 35.0% |
| !!! | CTGGGTAGGTGTATTTTTTT+GGG | - | chr6_1:86728597-86728616 | Msa0896550:intron | 35.0% |
| AAATGTCAGTCAGGTAGTTA+AGG | - | chr6_1:86728791-86728810 | Msa0896550:intron | 35.0% | |
| ATGTGCTACACTAGAGTTTA+AGG | - | chr6_1:86728869-86728888 | Msa0896550:intron | 35.0% | |
| AAATTCGACCTTTGTAACTG+GGG | - | chr6_1:86728948-86728967 | Msa0896550:intron | 35.0% | |
| ! | AAATGGGTGATTTTGTGAAG+TGG | - | chr6_1:86728994-86729013 | Msa0896550:intron | 35.0% |
| ! | AATGGGTGATTTTGTGAAGT+GGG | - | chr6_1:86728995-86729014 | Msa0896550:intron | 35.0% |
| TAGGTAGTGTGATGTAAATG+AGG | - | chr6_1:86729046-86729065 | Msa0896550:intron | 35.0% | |
| AGGTAGTGTGATGTAAATGA+GGG | - | chr6_1:86729047-86729066 | Msa0896550:intron | 35.0% | |
| GTGTAAATGAGGGACATTTA+TGG | - | chr6_1:86729092-86729111 | Msa0896550:intron | 35.0% | |
| !! | CTAAGTCTTATTATCCCACT+AGG | - | chr6_1:86729173-86729192 | Msa0896550:intron | 35.0% |
| !! | GTTGATCATTTTAGTGGAGT+CGG | - | chr6_1:86729491-86729510 | Msa0896550:intron | 35.0% |
| TTTATAGGCGTCAGATATGT+AGG | - | chr6_1:86729649-86729668 | Msa0896550:intron | 35.0% | |
| !!! | GTTTGACAAGTTTTTTTGGG+GGG | - | chr6_1:86729697-86729716 | Msa0896550:intron | 35.0% |
| CTAATGATTTGATCCACAAG+TGG | - | chr6_1:86729801-86729820 | Msa0896550:intron | 35.0% | |
| ! | TTAATTAAGTCAGTAGTGGG+TGG | - | chr6_1:86729980-86729999 | Msa0896550:intron | 35.0% |
| AAGAATAAATAGGGGAGAGA+TGG | - | chr6_1:86730012-86730031 | Msa0896550:CDS | 35.0% | |
| AGAATAAATAGGGGAGAGAT+GGG | - | chr6_1:86730013-86730032 | Msa0896550:CDS | 35.0% | |
| GATCATATGAGGATTTGACT+GGG | - | chr6_1:86730047-86730066 | Msa0896550:CDS | 35.0% | |
| ATAATATCGCAGAACTTCGA+GGG | + | chr6_1:86730105-86730124 | None:intergenic | 35.0% | |
| AATAATATCGCAGAACTTCG+AGG | + | chr6_1:86730106-86730125 | None:intergenic | 35.0% | |
| ! | TTTAAGTTTCAGCACAGGAT+AGG | + | chr6_1:86730300-86730319 | None:intergenic | 35.0% |
| GGAAATACAAGTTACAGCTA+TGG | + | chr6_1:86730463-86730482 | None:intergenic | 35.0% | |
| ! | CTAAGGAAACCTTTTTGTGT+TGG | - | chr6_1:86730608-86730627 | Msa0896550:intron | 35.0% |
| !!! | TGTTCACTGGCTTTTCTTTT+TGG | - | chr6_1:86730781-86730800 | Msa0896550:intron | 35.0% |
| ! | TTATTAATGAGAGCGTGCAA+AGG | + | chr6_1:86730888-86730907 | None:intergenic | 35.0% |
| !!! | AATGCTGGCATTTTTTCCAT+TGG | - | chr6_1:86730906-86730925 | Msa0896550:intron | 35.0% |
| TATGAAATACCAACCTCCAA+TGG | + | chr6_1:86730925-86730944 | None:intergenic | 35.0% | |
| CAATTTGTAACTTACCCTCT+CGG | - | chr6_1:86731133-86731152 | Msa0896550:intron | 35.0% | |
| !! | AGAAGTATTGAAAGCAAAGC+AGG | + | chr6_1:86731238-86731257 | None:intergenic | 35.0% |
| ! | TTCTTTTGCCATCCCTTATT+AGG | - | chr6_1:86731254-86731273 | Msa0896550:intron | 35.0% |
| ! | TCTTTTGCCATCCCTTATTA+GGG | - | chr6_1:86731255-86731274 | Msa0896550:intron | 35.0% |
| TTCACATTCACAATTCGACT+AGG | + | chr6_1:86731286-86731305 | None:intergenic | 35.0% | |
| CGTTATCAAAACCTTCAACA+AGG | + | chr6_1:86731547-86731566 | None:intergenic | 35.0% | |
| CATAAAATATGCAAGGTCTG+AGG | - | chr6_1:86731713-86731732 | Msa0896550:intron | 35.0% | |
| !!! | AGTGCACAACTTTTTTTTGG+TGG | + | chr6_1:86731754-86731773 | None:intergenic | 35.0% |
| ! | CGTGTCTGTAATTTGAAGTT+CGG | - | chr6_1:86732004-86732023 | Msa0896550:intron | 35.0% |
| TCTTGGAAATTTAACGTGCA+AGG | + | chr6_1:86732050-86732069 | None:intergenic | 35.0% | |
| GCACGTTAAATTTCCAAGAA+TGG | - | chr6_1:86732051-86732070 | Msa0896550:intron | 35.0% | |
| TGTTAGTGTACAAAAACTCC+AGG | - | chr6_1:86732133-86732152 | Msa0896550:intron | 35.0% | |
| ! | TGTTTTGTACTCAGTTATCC+TGG | + | chr6_1:86732154-86732173 | None:intergenic | 35.0% |
| AGGAAACCCATAAACCAAAA+TGG | + | chr6_1:86732313-86732332 | None:intergenic | 35.0% | |
| AACAATTGTACATCTGTTCC+TGG | - | chr6_1:86732681-86732700 | Msa0896550:intron | 35.0% | |
| ACAATTGTACATCTGTTCCT+GGG | - | chr6_1:86732682-86732701 | Msa0896550:intron | 35.0% | |
| !! | ACATAGTCAGCTTGTTTTCT+AGG | - | chr6_1:86732985-86733004 | Msa0896550:intron | 35.0% |
| AGTGTCAGATTAGATTGAAG+AGG | - | chr6_1:86733065-86733084 | Msa0896550:intron | 35.0% | |
| AAGAGGATATACGAAACACA+AGG | - | chr6_1:86733082-86733101 | Msa0896550:intron | 35.0% | |
| CTAAGCAAGTTCATCTTGTT+TGG | - | chr6_1:86733229-86733248 | Msa0896550:intron | 35.0% | |
| !! | TATACGGTGTATTGATTCAC+TGG | - | chr6_1:86733282-86733301 | Msa0896550:intron | 35.0% |
| AGTTTCAACTTCATCTATGC+AGG | - | chr6_1:86733350-86733369 | Msa0896550:intron | 35.0% | |
| CTTCCAAAATCTCTTCAAAC+TGG | - | chr6_1:86733381-86733400 | Msa0896550:intron | 35.0% | |
| ! | GGTTTGTTTATCCATTGCTT+TGG | - | chr6_1:86733444-86733463 | Msa0896550:intron | 35.0% |
| ATTGCATTCAACCAAAGCAA+TGG | + | chr6_1:86733458-86733477 | None:intergenic | 35.0% | |
| TGTAGTTGGAAATAGCATAG+GGG | - | chr6_1:86733872-86733891 | Msa0896550:intron | 35.0% | |
| ! | AGCATAGGGGTCTTATAAAA+AGG | - | chr6_1:86733885-86733904 | Msa0896550:intron | 35.0% |
| ! | GCATAGGGGTCTTATAAAAA+GGG | - | chr6_1:86733886-86733905 | Msa0896550:intron | 35.0% |
| ! | AAGGGTCTTATAATTAGGGA+CGG | - | chr6_1:86733926-86733945 | Msa0896550:intron | 35.0% |
| !! | TACAAAGTGTTGTCAATTGG+TGG | - | chr6_1:86734035-86734054 | Msa0896550:intron | 35.0% |
| ! | GGTTTGTTCAAATTTCGCAA+TGG | + | chr6_1:86734074-86734093 | None:intergenic | 35.0% |
| !!! | GACACTGATTTGAAGTGTTT+TGG | - | chr6_1:86734113-86734132 | Msa0896550:intron | 35.0% |
| ! | TATCAATTTTGCTGCAATGC+AGG | - | chr6_1:86734170-86734189 | Msa0896550:intron | 35.0% |
| !! | ATACTCTGAAACTTGAGGAT+CGG | + | chr6_1:86734222-86734241 | None:intergenic | 35.0% |
| !! | TCACAATACTCTGAAACTTG+AGG | + | chr6_1:86734227-86734246 | None:intergenic | 35.0% |
| TGAGAAATATACGGACAAAC+AGG | + | chr6_1:86734272-86734291 | None:intergenic | 35.0% | |
| !! | AGAGATGATTGGTCTTTCTT+CGG | - | chr6_1:86734367-86734386 | Msa0896550:intron | 35.0% |
| ! | ATTTAACTTCTTCTCCCTCT+AGG | + | chr6_1:86734409-86734428 | None:intergenic | 35.0% |
| TCATTAAGGGTGAGTATGTA+GGG | + | chr6_1:86734491-86734510 | None:intergenic | 35.0% | |
| TTCATTAAGGGTGAGTATGT+AGG | + | chr6_1:86734492-86734511 | None:intergenic | 35.0% | |
| TACATACTCACCCTTAATGA+AGG | - | chr6_1:86734491-86734510 | Msa0896550:CDS | 35.0% | |
| GAAGGACACTTTCAATATAG+GGG | - | chr6_1:86734509-86734528 | Msa0896550:CDS | 35.0% | |
| AAGGACACTTTCAATATAGG+GGG | - | chr6_1:86734510-86734529 | Msa0896550:CDS | 35.0% | |
| GTAATAGGTGAAATTGACTG+TGG | - | chr6_1:86734727-86734746 | Msa0896550:intron | 35.0% | |
| TGACTGTGGTAAACAAATAG+AGG | - | chr6_1:86734741-86734760 | Msa0896550:intron | 35.0% | |
| GACTGTGGTAAACAAATAGA+GGG | - | chr6_1:86734742-86734761 | Msa0896550:intron | 35.0% | |
| TAGAGGGTTCTATCTTACAA+TGG | - | chr6_1:86734758-86734777 | Msa0896550:five_prime_UTR | 35.0% | |
| GGTTGGATAGAATGGTTAAG+AGG | - | chr6_1:86728032-86728051 | Msa0896550:three_prime_UTR | 40.0% | |
| GGATAGAATGGTTAAGAGGA+TGG | - | chr6_1:86728036-86728055 | Msa0896550:three_prime_UTR | 40.0% | |
| !! | TTGATTGGTGGTAATGGCAT+AGG | + | chr6_1:86728119-86728138 | None:intergenic | 40.0% |
| ! | CAAGTGAGATCATTGATTGG+TGG | + | chr6_1:86728131-86728150 | None:intergenic | 40.0% |
| AATTTCAAGACCAATGCCAC+TGG | + | chr6_1:86728171-86728190 | None:intergenic | 40.0% | |
| !! | GCATTGGTCTTGAAATTGCA+AGG | - | chr6_1:86728174-86728193 | Msa0896550:three_prime_UTR | 40.0% |
| TTGATCTTTGTAACTTGGGG+TGG | - | chr6_1:86728281-86728300 | Msa0896550:CDS | 40.0% | |
| !!! | AAGTGGGTTGGTGTTGTTTT+TGG | - | chr6_1:86728343-86728362 | Msa0896550:CDS | 40.0% |
| !!! | AGTGGGTTGGTGTTGTTTTT+GGG | - | chr6_1:86728344-86728363 | Msa0896550:CDS | 40.0% |
| TGTTCATAAGCAGCTATAGC+CGG | - | chr6_1:86728744-86728763 | Msa0896550:intron | 40.0% | |
| ACTACCTGACTGACATTTCT+CGG | + | chr6_1:86728789-86728808 | None:intergenic | 40.0% | |
| TCAGGTAGTTAAGGTGGTTA+TGG | - | chr6_1:86728800-86728819 | Msa0896550:intron | 40.0% | |
| AATTCGACCTTTGTAACTGG+GGG | - | chr6_1:86728949-86728968 | Msa0896550:intron | 40.0% | |
| !! | TTGTTTGGTTCGGGAGAAAT+GGG | - | chr6_1:86728978-86728997 | Msa0896550:intron | 40.0% |
| ! | ATGGGTGATTTTGTGAAGTG+GGG | - | chr6_1:86728996-86729015 | Msa0896550:intron | 40.0% |
| ! | GTCTTATTATCCCACTAGGT+AGG | - | chr6_1:86729177-86729196 | Msa0896550:intron | 40.0% |
| TATAAAGGGGTCTCTGCATA+TGG | + | chr6_1:86729376-86729395 | None:intergenic | 40.0% | |
| ! | AGTCGGATCCATTTGGAATT+TGG | - | chr6_1:86729508-86729527 | Msa0896550:intron | 40.0% |
| TAGAGGAGCCAAATTCCAAA+TGG | + | chr6_1:86729519-86729538 | None:intergenic | 40.0% | |
| !!! | GTTTTTTTGGGGGGTAATGT+TGG | - | chr6_1:86729706-86729725 | Msa0896550:intron | 40.0% |
| !! | CAGATTGAGTCTGATGGATT+AGG | - | chr6_1:86729824-86729843 | Msa0896550:intron | 40.0% |
| !! | TGAGTCTGATGGATTAGGAT+TGG | - | chr6_1:86729829-86729848 | Msa0896550:intron | 40.0% |
| !! | GAGTCTGATGGATTAGGATT+GGG | - | chr6_1:86729830-86729849 | Msa0896550:intron | 40.0% |
| !! | TGATGGATTAGGATTGGGTA+TGG | - | chr6_1:86729835-86729854 | Msa0896550:intron | 40.0% |
| AAGATTGGTGGGATCATATG+AGG | - | chr6_1:86730036-86730055 | Msa0896550:CDS | 40.0% | |
| GGATCATATGAGGATTTGAC+TGG | - | chr6_1:86730046-86730065 | Msa0896550:CDS | 40.0% | |
| ATATGAGGATTTGACTGGGA+AGG | - | chr6_1:86730051-86730070 | Msa0896550:CDS | 40.0% | |
| TATGAGGATTTGACTGGGAA+GGG | - | chr6_1:86730052-86730071 | Msa0896550:CDS | 40.0% | |
| !! | AAGGGGTCATTTTGGCATTA+GGG | - | chr6_1:86730070-86730089 | Msa0896550:CDS | 40.0% |
| TTCCACACTTCAAGTCTAGA+GGG | + | chr6_1:86730269-86730288 | None:intergenic | 40.0% | |
| TTTCCACACTTCAAGTCTAG+AGG | + | chr6_1:86730270-86730289 | None:intergenic | 40.0% | |
| ACACACGAACCAACACAAAA+AGG | + | chr6_1:86730620-86730639 | None:intergenic | 40.0% | |
| !! | TTTGTGTTGGTTCGTGTGTT+TGG | - | chr6_1:86730621-86730640 | Msa0896550:intron | 40.0% |
| TTGGTATTACTCGTGTTCAC+TGG | - | chr6_1:86730768-86730787 | Msa0896550:intron | 40.0% | |
| !!! | CTTTTCTTTTTGGCTTGTCC+AGG | - | chr6_1:86730791-86730810 | Msa0896550:intron | 40.0% |
| TCTCATTGGATTCTGTTGCA+AGG | - | chr6_1:86730832-86730851 | Msa0896550:intron | 40.0% | |
| CACGCTCTCATTAATAATGC+TGG | - | chr6_1:86730891-86730910 | Msa0896550:intron | 40.0% | |
| !!! | GCATTTTTTCCATTGGAGGT+TGG | - | chr6_1:86730913-86730932 | Msa0896550:intron | 40.0% |
| AAGAGCAAAAACAACCGAGA+GGG | + | chr6_1:86731150-86731169 | None:intergenic | 40.0% | |
| TAAGAGCAAAAACAACCGAG+AGG | + | chr6_1:86731151-86731170 | None:intergenic | 40.0% | |
| ! | CTTTTGCCATCCCTTATTAG+GGG | - | chr6_1:86731256-86731275 | Msa0896550:intron | 40.0% |
| GAAGACATGAATGTCACATC+TGG | - | chr6_1:86731461-86731480 | Msa0896550:CDS | 40.0% | |
| CAGGTACATTTCCTTGTTGA+AGG | - | chr6_1:86731533-86731552 | Msa0896550:intron | 40.0% | |
| !!! | AACTTTTTTTTGGTGGTGGC+CGG | + | chr6_1:86731747-86731766 | None:intergenic | 40.0% |
| !!! | GCACAACTTTTTTTTGGTGG+TGG | + | chr6_1:86731751-86731770 | None:intergenic | 40.0% |
| !! | TGTTGGTTTCTGTCTAATGC+CGG | + | chr6_1:86731881-86731900 | None:intergenic | 40.0% |
| AGAAACCAACATGTAGACAC+CGG | - | chr6_1:86731890-86731909 | Msa0896550:intron | 40.0% | |
| AACCTTCTGTCAGTCATAAC+TGG | - | chr6_1:86731946-86731965 | Msa0896550:intron | 40.0% | |
| TACAAAAGCAGCAGCATCAT+AGG | - | chr6_1:86732216-86732235 | Msa0896550:intron | 40.0% | |
| ! | AAGTCATGATTTCTGAGAGC+AGG | + | chr6_1:86732254-86732273 | None:intergenic | 40.0% |
| ATGGGTTTCCTAACTTTCCT+TGG | - | chr6_1:86732322-86732341 | Msa0896550:intron | 40.0% | |
| AGTGTATTATGTGTATCGCC+TGG | - | chr6_1:86732622-86732641 | Msa0896550:intron | 40.0% | |
| CCTCAGTTATTAATCGGACA+TGG | + | chr6_1:86733119-86733138 | None:intergenic | 40.0% | |
| CCATGTCCGATTAATAACTG+AGG | - | chr6_1:86733116-86733135 | Msa0896550:intron | 40.0% | |
| AACTTCATCTATGCAGGCAA+GGG | - | chr6_1:86733356-86733375 | Msa0896550:intron | 40.0% | |
| AAGGGTCCTATAATTAGGGA+CGG | + | chr6_1:86733667-86733686 | None:intergenic | 40.0% | |
| GCTATGCTATTGCACTATAG+TGG | + | chr6_1:86733972-86733991 | None:intergenic | 40.0% | |
| !! | TGCTTCTTCTGAAGCATTTG+CGG | + | chr6_1:86734306-86734325 | None:intergenic | 40.0% |
| TGCCTAGCAATTGCTTAGTA+TGG | - | chr6_1:86734580-86734599 | Msa0896550:CDS | 40.0% | |
| GCCTAGCAATTGCTTAGTAT+GGG | - | chr6_1:86734581-86734600 | Msa0896550:CDS | 40.0% | |
| CCTAGCAATTGCTTAGTATG+GGG | - | chr6_1:86734582-86734601 | Msa0896550:CDS | 40.0% | |
| AGGAAACAAGAGAGTGAGTG+TGG | + | chr6_1:86727895-86727914 | None:intergenic | 45.0% | |
| !! | ATTGTTACTGGTTCCACCAG+TGG | - | chr6_1:86728152-86728171 | Msa0896550:three_prime_UTR | 45.0% |
| !! | GGTCATTTTGGAAAGTGGGT+TGG | - | chr6_1:86728331-86728350 | Msa0896550:CDS | 45.0% |
| GGTAATATTGGGAACTGGGT+AGG | - | chr6_1:86728583-86728602 | Msa0896550:intron | 45.0% | |
| ! | TAAGCAGCTATAGCCGGTTT+AGG | - | chr6_1:86728750-86728769 | Msa0896550:intron | 45.0% |
| ! | AAGCAGCTATAGCCGGTTTA+GGG | - | chr6_1:86728751-86728770 | Msa0896550:intron | 45.0% |
| TGTCAGTCAGGTAGTTAAGG+TGG | - | chr6_1:86728794-86728813 | Msa0896550:intron | 45.0% | |
| !! | GTTGTTTGGTTCGGGAGAAA+TGG | - | chr6_1:86728977-86728996 | Msa0896550:intron | 45.0% |
| ! | TGGGTGATTTTGTGAAGTGG+GGG | - | chr6_1:86728997-86729016 | Msa0896550:intron | 45.0% |
| !! | TGGGGGCAGTGTTATTTATG+TGG | - | chr6_1:86729014-86729033 | Msa0896550:intron | 45.0% |
| ATTATCCCACTAGGTAGGCT+CGG | - | chr6_1:86729182-86729201 | Msa0896550:intron | 45.0% | |
| CAGAGGAAGAGCTTTGCAAT+AGG | - | chr6_1:86729310-86729329 | Msa0896550:intron | 45.0% | |
| TTAGTGGAGTCGGATCCATT+TGG | - | chr6_1:86729501-86729520 | Msa0896550:intron | 45.0% | |
| ! | TGTTGGTCTCTCCATTATGC+AGG | - | chr6_1:86729723-86729742 | Msa0896550:intron | 45.0% |
| CTCTCCATTATGCAGGCAAT+TGG | - | chr6_1:86729730-86729749 | Msa0896550:intron | 45.0% | |
| TCTGCCAATTGCCTGCATAA+TGG | + | chr6_1:86729737-86729756 | None:intergenic | 45.0% | |
| ! | ATCAGGGGCACATGTTGTTA+TGG | - | chr6_1:86729757-86729776 | Msa0896550:intron | 45.0% |
| CACATGTTGTTATGGCTGTG+AGG | - | chr6_1:86729765-86729784 | Msa0896550:intron | 45.0% | |
| AAGTGGCAGATTGAGTCTGA+TGG | - | chr6_1:86729818-86729837 | Msa0896550:intron | 45.0% | |
| ATGAGGATTTGACTGGGAAG+GGG | - | chr6_1:86730053-86730072 | Msa0896550:CDS | 45.0% | |
| !! | GAAGGGGTCATTTTGGCATT+AGG | - | chr6_1:86730069-86730088 | Msa0896550:CDS | 45.0% |
| ! | CGCACTAGATTGGGATTTTC+TGG | + | chr6_1:86730370-86730389 | None:intergenic | 45.0% |
| !!! | TTTTTGGCTTGTCCAGGTGA+TGG | - | chr6_1:86730797-86730816 | Msa0896550:intron | 45.0% |
| GGAGGTAGATCTTCTCTCAT+TGG | - | chr6_1:86730818-86730837 | Msa0896550:intron | 45.0% | |
| !! | TTGCAAGGTTTGCTGAAGCT+TGG | - | chr6_1:86730847-86730866 | Msa0896550:intron | 45.0% |
| !!! | GCTGGCATTTTTTCCATTGG+AGG | - | chr6_1:86730909-86730928 | Msa0896550:intron | 45.0% |
| ACTAGGAGAGCCCCTAATAA+GGG | + | chr6_1:86731269-86731288 | None:intergenic | 45.0% | |
| CTCAAGTAGCAAGTTAGCAC+AGG | - | chr6_1:86731514-86731533 | Msa0896550:intron | 45.0% | |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | - | chr6_1:86731684-86731703 | Msa0896550:intron | 45.0% |
| !!! | ACTTTTTTTTGGTGGTGGCC+GGG | + | chr6_1:86731746-86731765 | None:intergenic | 45.0% |
| TTGTGCACTGTTCAACTGAC+AGG | - | chr6_1:86731765-86731784 | Msa0896550:CDS | 45.0% | |
| TGTGCACTGTTCAACTGACA+GGG | - | chr6_1:86731766-86731785 | Msa0896550:CDS | 45.0% | |
| CGTCTGTGTCAATGCTTCAT+AGG | + | chr6_1:86731858-86731877 | None:intergenic | 45.0% | |
| CATTACCGGTGTCTACATGT+TGG | + | chr6_1:86731898-86731917 | None:intergenic | 45.0% | |
| ! | ACATTGGTCTGGACAATTCC+AGG | + | chr6_1:86732643-86732662 | None:intergenic | 45.0% |
| AAAACAAACATTCAGGGGGC+CGG | + | chr6_1:86732801-86732820 | None:intergenic | 45.0% | |
| CAACTTCATCTATGCAGGCA+AGG | - | chr6_1:86733355-86733374 | Msa0896550:intron | 45.0% | |
| CTACCTCCGTCCCTAATTAT+AGG | - | chr6_1:86733658-86733677 | Msa0896550:intron | 45.0% | |
| ! | TCCTTTAAGAGAGAGAGGGT+TGG | - | chr6_1:86733765-86733784 | Msa0896550:intron | 45.0% |
| ACCAACCCTCTCTCTCTTAA+AGG | + | chr6_1:86733769-86733788 | None:intergenic | 45.0% | |
| ! | GGTCTTATAATTAGGGACGG+AGG | - | chr6_1:86733929-86733948 | Msa0896550:intron | 45.0% |
| ! | TCAATTGGTGGCTATAGCAC+TGG | - | chr6_1:86734047-86734066 | Msa0896550:intron | 45.0% |
| TCTTCAGTCGCGGAAAATAG+CGG | + | chr6_1:86734095-86734114 | None:intergenic | 45.0% | |
| CAAATCAGTGTCTTCAGTCG+CGG | + | chr6_1:86734105-86734124 | None:intergenic | 45.0% | |
| TTTGCTGCAATGCAGGTTCT+AGG | - | chr6_1:86734177-86734196 | Msa0896550:intron | 45.0% | |
| !! | GCTTCTTCTGAAGCATTTGC+GGG | + | chr6_1:86734305-86734324 | None:intergenic | 45.0% |
| ! | TCCCTCTAGGAACTTCTCTA+CGG | + | chr6_1:86734396-86734415 | None:intergenic | 45.0% |
| CTTGTGTTAATCGCGTGCTT+TGG | + | chr6_1:86734463-86734482 | None:intergenic | 45.0% | |
| TGCTAGGCATCACAATCACA+AGG | + | chr6_1:86734569-86734588 | None:intergenic | 45.0% | |
| CCCCATACTAAGCAATTGCT+AGG | + | chr6_1:86734585-86734604 | None:intergenic | 45.0% | |
| !!! | TTATTTAAATTTGAATTTTA+AGG | - | chr6_1:86730522-86730541 | Msa0896550:intron | 5.0% |
| TTCAAGACCAATGCCACTGG+TGG | + | chr6_1:86728168-86728187 | None:intergenic | 50.0% | |
| !! | TGTAACTCGGGTTGGTGCAT+TGG | - | chr6_1:86728399-86728418 | Msa0896550:CDS | 50.0% |
| ! | AGCAGCTATAGCCGGTTTAG+GGG | - | chr6_1:86728752-86728771 | Msa0896550:intron | 50.0% |
| ACAACCACCCCCAGTTACAA+AGG | + | chr6_1:86728959-86728978 | None:intergenic | 50.0% | |
| ! | AACTGGGGGTGGTTGTTGTT+TGG | - | chr6_1:86728963-86728982 | Msa0896550:intron | 50.0% |
| !! | GGGGTGGTTGTTGTTTGGTT+CGG | - | chr6_1:86728968-86728987 | Msa0896550:intron | 50.0% |
| !! | GGGTGGTTGTTGTTTGGTTC+GGG | - | chr6_1:86728969-86728988 | Msa0896550:intron | 50.0% |
| TGTAACCGAGCCTACCTAGT+GGG | + | chr6_1:86729190-86729209 | None:intergenic | 50.0% | |
| ATGTAACCGAGCCTACCTAG+TGG | + | chr6_1:86729191-86729210 | None:intergenic | 50.0% | |
| TGCAGGCAATTGGCAGAATC+AGG | - | chr6_1:86729740-86729759 | Msa0896550:intron | 50.0% | |
| GCAGGCAATTGGCAGAATCA+GGG | - | chr6_1:86729741-86729760 | Msa0896550:intron | 50.0% | |
| CAGGCAATTGGCAGAATCAG+GGG | - | chr6_1:86729742-86729761 | Msa0896550:intron | 50.0% | |
| TGGCTGTGAGGAACACAAAG+CGG | - | chr6_1:86729777-86729796 | Msa0896550:intron | 50.0% | |
| ! | CAGACTCAATCTGCCACTTG+TGG | + | chr6_1:86729817-86729836 | None:intergenic | 50.0% |
| TAGGGGAGAGATGGGAAGAT+TGG | - | chr6_1:86730021-86730040 | Msa0896550:CDS | 50.0% | |
| GGAGAGATGGGAAGATTGGT+GGG | - | chr6_1:86730025-86730044 | Msa0896550:CDS | 50.0% | |
| ! | TGACTGGGAAGGGGTCATTT+TGG | - | chr6_1:86730062-86730081 | Msa0896550:CDS | 50.0% |
| CTAGAGGGCTATGAGAGAGA+AGG | + | chr6_1:86730254-86730273 | None:intergenic | 50.0% | |
| AGCCCTCTAGACTTGAAGTG+TGG | - | chr6_1:86730264-86730283 | Msa0896550:intron | 50.0% | |
| TTTAGAGGAATGTGGCGGCA+AGG | - | chr6_1:86730324-86730343 | Msa0896550:intron | 50.0% | |
| GAAGATCTACCTCCATCACC+TGG | + | chr6_1:86730812-86730831 | None:intergenic | 50.0% | |
| GACTAGGAGAGCCCCTAATA+AGG | + | chr6_1:86731270-86731289 | None:intergenic | 50.0% | |
| CCAACTGAGCTAAGCTCATG+AGG | + | chr6_1:86731682-86731701 | None:intergenic | 50.0% | |
| CCTCATGAGCTTAGCTCAGT+TGG | - | chr6_1:86731679-86731698 | Msa0896550:intron | 50.0% | |
| !!! | CTTTTTTTTGGTGGTGGCCG+GGG | + | chr6_1:86731745-86731764 | None:intergenic | 50.0% |
| !! | TGAAGCATTGACACAGACGC+CGG | - | chr6_1:86731859-86731878 | Msa0896550:intron | 50.0% |
| CGCCAGTTATGACTGACAGA+AGG | + | chr6_1:86731951-86731970 | None:intergenic | 50.0% | |
| ! | GGGTTTGGCGTTTTTACTGC+AGG | - | chr6_1:86732549-86732568 | Msa0896550:intron | 50.0% |
| GGTCCTATAATTAGGGACGG+AGG | + | chr6_1:86733664-86733683 | None:intergenic | 50.0% | |
| TGCCGTAGAGAAGTTCCTAG+AGG | - | chr6_1:86734391-86734410 | Msa0896550:intron | 50.0% | |
| GCCGTAGAGAAGTTCCTAGA+GGG | - | chr6_1:86734392-86734411 | Msa0896550:intron | 50.0% | |
| ! | ACTGGTTCCACCAGTGGCAT+TGG | - | chr6_1:86728158-86728177 | Msa0896550:three_prime_UTR | 55.0% |
| ! | GCAGCTATAGCCGGTTTAGG+GGG | - | chr6_1:86728753-86728772 | Msa0896550:intron | 55.0% |
| ! | TATAGCCGGTTTAGGGGGAG+AGG | - | chr6_1:86728758-86728777 | Msa0896550:intron | 55.0% |
| ! | ATAGCCGGTTTAGGGGGAGA+GGG | - | chr6_1:86728759-86728778 | Msa0896550:intron | 55.0% |
| GTGGCCGAGAAATGTCAGTC+AGG | - | chr6_1:86728782-86728801 | Msa0896550:intron | 55.0% | |
| TCGACCTTTGTAACTGGGGG+TGG | - | chr6_1:86728952-86728971 | Msa0896550:intron | 55.0% | |
| CACACACAGTAGCGAGACAG+AGG | - | chr6_1:86729293-86729312 | Msa0896550:intron | 55.0% | |
| GGCTGTGAGGAACACAAAGC+GGG | - | chr6_1:86729778-86729797 | Msa0896550:intron | 55.0% | |
| GGGTATGGCACTCAATGTCG+AGG | - | chr6_1:86729850-86729869 | Msa0896550:intron | 55.0% | |
| GGGAGAGATGGGAAGATTGG+TGG | - | chr6_1:86730024-86730043 | Msa0896550:CDS | 55.0% | |
| !! | TTGGCTTGTCCAGGTGATGG+AGG | - | chr6_1:86730800-86730819 | Msa0896550:intron | 55.0% |
| GGAGAGCCCCTAATAAGGGA+TGG | + | chr6_1:86731265-86731284 | None:intergenic | 55.0% | |
| ! | AAGGTCTGAGGTTCGAACCC+CGG | - | chr6_1:86731725-86731744 | Msa0896550:intron | 55.0% |
| TGCCAGACACTATCACGCGT+CGG | - | chr6_1:86731973-86731992 | Msa0896550:intron | 55.0% | |
| ! | ATCCGACGCGTGATAGTGTC+TGG | + | chr6_1:86731978-86731997 | None:intergenic | 55.0% |
| CACTATCACGCGTCGGATGT+CGG | - | chr6_1:86731980-86731999 | Msa0896550:intron | 55.0% | |
| GCAGCAGCATCATAGGACTG+TGG | - | chr6_1:86732223-86732242 | Msa0896550:intron | 55.0% | |
| AAGCGACTACCTGCTGAAGC+CGG | - | chr6_1:86732595-86732614 | Msa0896550:intron | 55.0% | |
| !! | ACACTGATACCGGCTTCAGC+AGG | + | chr6_1:86732607-86732626 | None:intergenic | 55.0% |
| !! | CAGGAGTACTTGTTCGACCC+AGG | + | chr6_1:86732702-86732721 | None:intergenic | 55.0% |
| ! | TAGCCGGTTTAGGGGGAGAG+GGG | - | chr6_1:86728760-86728779 | Msa0896550:intron | 60.0% |
| CCACCCCTCTCCCCCTAAAC+CGG | + | chr6_1:86728766-86728785 | None:intergenic | 65.0% | |
| CCGGTTTAGGGGGAGAGGGG+TGG | - | chr6_1:86728763-86728782 | Msa0896550:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 86727851 | 86734824 | 86727851 | ID=Msa0896550;Name=Msa0896550 |
| chr6_1 | mRNA | 86727851 | 86734824 | 86727851 | ID=Msa0896550-mRNA-1;Parent=Msa0896550;Name=Msa0896550-mRNA-1;_AED=0.32;_eAED=0.32;_QI=89|1|1|1|0.87|0.77|9|370|380 |
| chr6_1 | exon | 86727851 | 86728483 | 86727851 | ID=Msa0896550-mRNA-1:exon:14710;Parent=Msa0896550-mRNA-1 |
| chr6_1 | exon | 86729231 | 86729303 | 86729231 | ID=Msa0896550-mRNA-1:exon:14709;Parent=Msa0896550-mRNA-1 |
| chr6_1 | exon | 86730012 | 86730104 | 86730012 | ID=Msa0896550-mRNA-1:exon:14708;Parent=Msa0896550-mRNA-1 |
| chr6_1 | exon | 86731140 | 86731241 | 86731140 | ID=Msa0896550-mRNA-1:exon:14707;Parent=Msa0896550-mRNA-1 |
| chr6_1 | exon | 86731363 | 86731499 | 86731363 | ID=Msa0896550-mRNA-1:exon:14706;Parent=Msa0896550-mRNA-1 |
| chr6_1 | exon | 86731745 | 86731862 | 86731745 | ID=Msa0896550-mRNA-1:exon:14705;Parent=Msa0896550-mRNA-1 |
| chr6_1 | exon | 86732804 | 86732930 | 86732804 | ID=Msa0896550-mRNA-1:exon:14704;Parent=Msa0896550-mRNA-1 |
| chr6_1 | exon | 86734480 | 86734721 | 86734480 | ID=Msa0896550-mRNA-1:exon:14703;Parent=Msa0896550-mRNA-1 |
| chr6_1 | exon | 86734748 | 86734824 | 86734748 | ID=Msa0896550-mRNA-1:exon:14702;Parent=Msa0896550-mRNA-1 |
| chr6_1 | five_prime_UTR | 86734748 | 86734824 | 86734748 | ID=Msa0896550-mRNA-1:five_prime_utr;Parent=Msa0896550-mRNA-1 |
| chr6_1 | five_prime_UTR | 86734710 | 86734721 | 86734710 | ID=Msa0896550-mRNA-1:five_prime_utr;Parent=Msa0896550-mRNA-1 |
| chr6_1 | CDS | 86734480 | 86734709 | 86734480 | ID=Msa0896550-mRNA-1:cds;Parent=Msa0896550-mRNA-1 |
| chr6_1 | CDS | 86732804 | 86732930 | 86732804 | ID=Msa0896550-mRNA-1:cds;Parent=Msa0896550-mRNA-1 |
| chr6_1 | CDS | 86731745 | 86731862 | 86731745 | ID=Msa0896550-mRNA-1:cds;Parent=Msa0896550-mRNA-1 |
| chr6_1 | CDS | 86731363 | 86731499 | 86731363 | ID=Msa0896550-mRNA-1:cds;Parent=Msa0896550-mRNA-1 |
| chr6_1 | CDS | 86731140 | 86731241 | 86731140 | ID=Msa0896550-mRNA-1:cds;Parent=Msa0896550-mRNA-1 |
| chr6_1 | CDS | 86730012 | 86730104 | 86730012 | ID=Msa0896550-mRNA-1:cds;Parent=Msa0896550-mRNA-1 |
| chr6_1 | CDS | 86729231 | 86729303 | 86729231 | ID=Msa0896550-mRNA-1:cds;Parent=Msa0896550-mRNA-1 |
| chr6_1 | CDS | 86728221 | 86728483 | 86728221 | ID=Msa0896550-mRNA-1:cds;Parent=Msa0896550-mRNA-1 |
| chr6_1 | three_prime_UTR | 86727851 | 86728220 | 86727851 | ID=Msa0896550-mRNA-1:three_prime_utr;Parent=Msa0896550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
