Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0897460 | MCH79723.1 | 71.028 | 107 | 25 | 3 | 122 | 222 | 590 | 696 | 3.28e-35 | 143 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0897460 | A0A392LXP3 | 71.028 | 107 | 25 | 3 | 122 | 222 | 590 | 696 | 1.57e-35 | 143 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0897460 | Msa0924060 | 0.898345 | 5.809205e-77 | -8.615850e-47 |
| Msa0897460 | Msa0997520 | 0.931165 | 5.649571e-94 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0897460 | MtrunA17_Chr4g0041691 | 40.506 | 158 | 71 | 6 | 88 | 222 | 582 | 739 | 1.06e-24 | 101 |
| Msa0897460 | MtrunA17_Chr6g0472401 | 44.860 | 107 | 53 | 3 | 122 | 222 | 130 | 236 | 1.66e-21 | 92.4 |
| Msa0897460 | MtrunA17_Chr2g0306511 | 45.361 | 97 | 47 | 3 | 132 | 222 | 547 | 643 | 1.02e-18 | 84.3 |
| Msa0897460 | MtrunA17_Chr6g0478941 | 45.361 | 97 | 47 | 3 | 132 | 222 | 172 | 268 | 3.64e-18 | 82.8 |
| Msa0897460 | MtrunA17_Chr1g0175041 | 44.330 | 97 | 48 | 3 | 132 | 222 | 562 | 658 | 3.98e-18 | 82.8 |
| Msa0897460 | MtrunA17_Chr8g0367821 | 44.330 | 97 | 48 | 3 | 132 | 222 | 172 | 268 | 4.02e-18 | 82.0 |
| Msa0897460 | MtrunA17_Chr1g0170491 | 44.330 | 97 | 48 | 3 | 132 | 222 | 547 | 643 | 4.83e-18 | 82.4 |
| Msa0897460 | MtrunA17_Chr0c01g0489031 | 45.361 | 97 | 47 | 3 | 132 | 222 | 547 | 643 | 5.81e-18 | 82.0 |
| Msa0897460 | MtrunA17_Chr6g0475571 | 44.330 | 97 | 48 | 3 | 132 | 222 | 186 | 282 | 6.03e-18 | 82.0 |
| Msa0897460 | MtrunA17_Chr8g0363431 | 44.330 | 97 | 48 | 3 | 132 | 222 | 589 | 685 | 7.87e-18 | 82.0 |
| Msa0897460 | MtrunA17_Chr4g0044301 | 44.330 | 97 | 48 | 3 | 132 | 222 | 547 | 643 | 7.95e-18 | 82.0 |
| Msa0897460 | MtrunA17_Chr6g0452431 | 44.330 | 97 | 48 | 3 | 132 | 222 | 469 | 565 | 8.79e-18 | 81.6 |
| Msa0897460 | MtrunA17_Chr2g0306251 | 44.330 | 97 | 48 | 3 | 132 | 222 | 406 | 502 | 9.15e-18 | 81.6 |
| Msa0897460 | MtrunA17_Chr4g0019441 | 45.361 | 97 | 47 | 3 | 132 | 222 | 523 | 619 | 1.12e-17 | 81.3 |
| Msa0897460 | MtrunA17_Chr3g0096731 | 44.330 | 97 | 48 | 3 | 132 | 222 | 308 | 404 | 1.37e-17 | 80.9 |
| Msa0897460 | MtrunA17_Chr3g0105561 | 44.330 | 97 | 48 | 3 | 132 | 222 | 138 | 234 | 1.45e-17 | 80.9 |
| Msa0897460 | MtrunA17_Chr2g0306241 | 43.299 | 97 | 49 | 3 | 132 | 222 | 61 | 157 | 2.37e-17 | 80.1 |
| Msa0897460 | MtrunA17_Chr2g0306051 | 44.898 | 98 | 47 | 3 | 132 | 222 | 514 | 611 | 3.19e-17 | 80.1 |
| Msa0897460 | MtrunA17_Chr4g0053141 | 43.299 | 97 | 49 | 3 | 132 | 222 | 547 | 643 | 3.57e-17 | 80.1 |
| Msa0897460 | MtrunA17_Chr2g0306271 | 43.299 | 97 | 49 | 3 | 132 | 222 | 547 | 643 | 3.58e-17 | 79.7 |
| Msa0897460 | MtrunA17_Chr4g0018081 | 43.299 | 97 | 49 | 3 | 132 | 222 | 445 | 541 | 4.10e-17 | 79.7 |
| Msa0897460 | MtrunA17_Chr1g0170501 | 42.268 | 97 | 50 | 3 | 132 | 222 | 363 | 459 | 2.42e-16 | 77.4 |
| Msa0897460 | MtrunA17_Chr7g0231051 | 43.299 | 97 | 49 | 3 | 132 | 222 | 575 | 671 | 8.82e-16 | 75.9 |
| Msa0897460 | MtrunA17_Chr3g0096001 | 42.593 | 108 | 56 | 3 | 121 | 222 | 481 | 588 | 1.14e-15 | 75.5 |
| Msa0897460 | MtrunA17_Chr1g0172201 | 41.237 | 97 | 51 | 3 | 132 | 222 | 86 | 182 | 1.16e-14 | 72.4 |
| Msa0897460 | MtrunA17_Chr3g0084281 | 45.361 | 97 | 47 | 3 | 132 | 222 | 599 | 695 | 6.68e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 68 sgRNAs with CRISPR-Local
Find 348 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCGTGCTCCGTACTTGTTC+TGG | 0.204772 | 6_1:-89686304 | Msa0897440:intron |
| TTAAAATTGGATTTGAAATC+AGG | 0.252831 | 6_1:+89686834 | Msa0897460:CDS |
| GCTACAGACATGTTAATATC+AGG | 0.329618 | 6_1:+89686648 | Msa0897460:CDS |
| AACTCATCAATCACTGGAAT+TGG | 0.336395 | 6_1:-89686792 | Msa0897440:intron |
| TGTGAAGAGCATACTTGATT+TGG | 0.351934 | 6_1:+89685239 | Msa0897460:CDS |
| AGTGGCATGGCCGTCGTTCT+TGG | 0.355616 | 6_1:+89685988 | Msa0897460:CDS |
| AGGGAAGGAGCAGGGGTTGG+AGG | 0.368566 | 6_1:+89686470 | Msa0897460:CDS |
| ATGGCCGTCGTTCTTGGTTA+AGG | 0.382787 | 6_1:+89685994 | Msa0897460:CDS |
| GGAGAGTATGCTGATCTGTT+TGG | 0.390541 | 6_1:+89686425 | Msa0897460:CDS |
| CGCCGCCGCCTTTCTCCCTT+CGG | 0.399756 | 6_1:-89686030 | Msa0897440:intron |
| GGCGAGAACTTCGCCGGAAA+AGG | 0.404460 | 6_1:+89685941 | Msa0897460:CDS |
| GCGTGCTCCGTACTTGTTCT+GGG | 0.407425 | 6_1:-89686303 | Msa0897440:intron |
| ACTGTTTCGCGAACGACGGC+CGG | 0.407676 | 6_1:-89685968 | Msa0897440:intron |
| TCTCTACAGGAACTCGATCC+TGG | 0.424052 | 6_1:+89686259 | Msa0897460:intron |
| AAAAGGGAAGGAGCAGGGGT+TGG | 0.431166 | 6_1:+89686467 | Msa0897460:CDS |
| TATACACACCTGAGGTGAAA+AGG | 0.440121 | 6_1:+89686450 | Msa0897460:CDS |
| CGAAGGGAGAAAGGCGGCGG+CGG | 0.449428 | 6_1:+89686031 | Msa0897460:CDS |
| TTCCATTCTCAGCTTTGAAA+CGG | 0.455070 | 6_1:-89686054 | Msa0897440:intron |
| GAGAATGGAAGAATGAAGAG+AGG | 0.475940 | 6_1:+89686067 | Msa0897460:CDS |
| CATACTTGATTTGGAGTTGG+AGG | 0.485218 | 6_1:+89685248 | Msa0897460:CDS |
| GAGCATACTTGATTTGGAGT+TGG | 0.491819 | 6_1:+89685245 | Msa0897460:CDS |
| TGTTAATATCAGGACTCATC+AGG | 0.494575 | 6_1:+89686658 | Msa0897460:CDS |
| TCAAAACACCGAAGGGAGAA+AGG | 0.495459 | 6_1:+89686022 | Msa0897460:CDS |
| TAAAATTGGATTTGAAATCA+GGG | 0.502270 | 6_1:+89686835 | Msa0897460:CDS |
| GAGGTGAAAAGGGAAGGAGC+AGG | 0.505660 | 6_1:+89686461 | Msa0897460:CDS |
| GGCCGTTTCAAAGCTGAGAA+TGG | 0.509090 | 6_1:+89686052 | Msa0897460:CDS |
| CACCGAAGGGAGAAAGGCGG+CGG | 0.509135 | 6_1:+89686028 | Msa0897460:CDS |
| CCCCACAACTCATCAATCAC+TGG | 0.517138 | 6_1:-89686798 | Msa0897440:intron |
| GTATGCTCTTCACACCCCTC+TGG | 0.520136 | 6_1:-89685230 | Msa0897440:intron |
| TCCAGTGATTGATGAGTTGT+GGG | 0.523941 | 6_1:+89686797 | Msa0897460:CDS |
| ATACACACCTGAGGTGAAAA+GGG | 0.525243 | 6_1:+89686451 | Msa0897460:CDS |
| GCGAGAACTTCGCCGGAAAA+GGG | 0.525329 | 6_1:+89685942 | Msa0897460:CDS |
| CTGTTTCGCGAACGACGGCC+GGG | 0.528326 | 6_1:-89685967 | Msa0897440:intron |
| ACTGAATATTTAACTCATGA+AGG | 0.530281 | 6_1:+89686894 | Msa0897460:CDS |
| AGAAAAGACATGGCAGTTGG+TGG | 0.537906 | 6_1:+89686721 | Msa0897460:CDS |
| AGGTGAAAAGGGAAGGAGCA+GGG | 0.544469 | 6_1:+89686462 | Msa0897460:CDS |
| TTCCAGTGATTGATGAGTTG+TGG | 0.548790 | 6_1:+89686796 | Msa0897460:CDS |
| TGCCACTGTTTCGCGAACGA+CGG | 0.553748 | 6_1:-89685972 | Msa0897440:intron |
| CTTCGCCGGAAAAGGGAACC+CGG | 0.564159 | 6_1:+89685949 | Msa0897460:CDS |
| GCATCAGATTCAAACGAAAG+AGG | 0.564841 | 6_1:+89686857 | Msa0897460:CDS |
| TGGTATTCAGAGCTCAACCT+GGG | 0.576116 | 6_1:+89686403 | Msa0897460:intron |
| GGCCGTCGTTCGCGAAACAG+TGG | 0.579434 | 6_1:+89685970 | Msa0897460:CDS |
| CATCAGATTCAAACGAAAGA+GGG | 0.582992 | 6_1:+89686858 | Msa0897460:CDS |
| TTGGTATTCAGAGCTCAACC+TGG | 0.583240 | 6_1:+89686402 | Msa0897460:intron |
| GGTTGTTTCAAAACACCGAA+GGG | 0.585404 | 6_1:+89686015 | Msa0897460:CDS |
| AAGAATGAAGAGAGGGAAGA+CGG | 0.588164 | 6_1:+89686075 | Msa0897460:CDS |
| TCAAGAAAAGACATGGCAGT+TGG | 0.589862 | 6_1:+89686718 | Msa0897460:CDS |
| AGAATGGAAGAATGAAGAGA+GGG | 0.594765 | 6_1:+89686068 | Msa0897460:CDS |
| CAGATCAGCATACTCTCCCC+AGG | 0.595759 | 6_1:-89686420 | Msa0897440:intron |
| AACGACGGCGAGAACTTCGC+CGG | 0.596391 | 6_1:+89685935 | Msa0897460:CDS |
| GGTGAAAAGGGAAGGAGCAG+GGG | 0.600053 | 6_1:+89686463 | Msa0897460:CDS |
| AGGTTGTTTCAAAACACCGA+AGG | 0.602657 | 6_1:+89686014 | Msa0897460:CDS |
| TCGTTCGCGAAACAGTGGCA+TGG | 0.606573 | 6_1:+89685975 | Msa0897460:CDS |
| GGAGGAAAAGATTTACCAGA+GGG | 0.616697 | 6_1:+89685215 | Msa0897460:CDS |
| ACACCTGAGGTGAAAAGGGA+AGG | 0.620205 | 6_1:+89686455 | Msa0897460:CDS |
| ATTCATGTCAAGAAAAGACA+TGG | 0.630694 | 6_1:+89686711 | Msa0897460:CDS |
| GATTGATGAGTTGTGGGGAG+CGG | 0.637510 | 6_1:+89686803 | Msa0897460:CDS |
| GTTTGGTTTATACACACCTG+AGG | 0.640201 | 6_1:+89686442 | Msa0897460:CDS |
| CTAGCATATCGACTTACAGT+GGG | 0.640420 | 6_1:-89686681 | Msa0897440:intron |
| GCTAGCATATCGACTTACAG+TGG | 0.683609 | 6_1:-89686682 | Msa0897440:intron |
| AATGAAGAGAGGGAAGACGG+CGG | 0.691651 | 6_1:+89686078 | Msa0897460:CDS |
| GGTATTCAGAGCTCAACCTG+GGG | 0.697483 | 6_1:+89686404 | Msa0897460:intron |
| TGGAGGAAAAGATTTACCAG+AGG | 0.722286 | 6_1:+89685214 | Msa0897460:CDS |
| ACAACCTTAACCAAGAACGA+CGG | 0.723680 | 6_1:-89685998 | Msa0897440:intron |
| AAACACCGAAGGGAGAAAGG+CGG | 0.746676 | 6_1:+89686025 | Msa0897460:CDS |
| CCAGTGATTGATGAGTTGTG+GGG | 0.752783 | 6_1:+89686798 | Msa0897460:CDS |
| TGAGGGAAGAGAGTGAACGA+CGG | 0.756419 | 6_1:+89685920 | Msa0897460:intron |
| GAGGAAAAGATTTACCAGAG+GGG | 0.812441 | 6_1:+89685216 | Msa0897460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATCGAAAAAAATAGTT+AGG | + | chr6_1:89685865-89685884 | Msa0897460:intron | 15.0% |
| !! | AAAATCGAAAAAAATAGTTA+GGG | + | chr6_1:89685866-89685885 | Msa0897460:intron | 15.0% |
| !! | AAAAATCGAAAAAAATAGTT+AGG | + | chr6_1:89685865-89685884 | Msa0897460:intron | 15.0% |
| !! | AAAATCGAAAAAAATAGTTA+GGG | + | chr6_1:89685866-89685885 | Msa0897460:intron | 15.0% |
| !! | TGATATTATTGATGTTAACT+AGG | - | chr6_1:89685428-89685447 | Msa0897440:intron | 20.0% |
| !! | TCAATAATATCATAACTACT+AGG | + | chr6_1:89685436-89685455 | Msa0897460:intron | 20.0% |
| !!! | TTTTCTTGACATGAATTAAA+AGG | - | chr6_1:89686707-89686726 | Msa0897440:intron | 20.0% |
| !!! | AGCGGTAAAATTTTTAAAAT+TGG | + | chr6_1:89686821-89686840 | Msa0897460:CDS | 20.0% |
| !!! | TTAAAATTGGATTTGAAATC+AGG | + | chr6_1:89686834-89686853 | Msa0897460:CDS | 20.0% |
| !!! | TAAAATTGGATTTGAAATCA+GGG | + | chr6_1:89686835-89686854 | Msa0897460:CDS | 20.0% |
| !! | TGATATTATTGATGTTAACT+AGG | - | chr6_1:89685428-89685447 | Msa0897440:intron | 20.0% |
| !! | TCAATAATATCATAACTACT+AGG | + | chr6_1:89685436-89685455 | Msa0897460:intron | 20.0% |
| !!! | TTTTCTTGACATGAATTAAA+AGG | - | chr6_1:89686707-89686726 | Msa0897440:intron | 20.0% |
| !!! | AGCGGTAAAATTTTTAAAAT+TGG | + | chr6_1:89686821-89686840 | Msa0897460:CDS | 20.0% |
| !!! | TTAAAATTGGATTTGAAATC+AGG | + | chr6_1:89686834-89686853 | Msa0897460:CDS | 20.0% |
| !!! | TAAAATTGGATTTGAAATCA+GGG | + | chr6_1:89686835-89686854 | Msa0897460:CDS | 20.0% |
| ! | TGGAATGCTAAAACAATTTA+TGG | - | chr6_1:89685382-89685401 | Msa0897440:intron | 25.0% |
| ! | TATTATTGATGTTAACTAGG+AGG | - | chr6_1:89685425-89685444 | Msa0897440:intron | 25.0% |
| ! | CTTACTAAATCATAACTACT+AGG | + | chr6_1:89685543-89685562 | Msa0897460:intron | 25.0% |
| !!! | CAATATGTTGTTTCTATTGA+AGG | - | chr6_1:89685794-89685813 | Msa0897440:intron | 25.0% |
| ! | GAAAAAAATAGTTAGGGTTA+TGG | + | chr6_1:89685872-89685891 | Msa0897460:intron | 25.0% |
| ! | ACCATGTCATAACTATATAT+AGG | + | chr6_1:89686154-89686173 | Msa0897460:intron | 25.0% |
| ! | CCATGTCATAACTATATATA+GGG | + | chr6_1:89686155-89686174 | Msa0897460:intron | 25.0% |
| ! | ACTGAATATTTAACTCATGA+AGG | + | chr6_1:89686894-89686913 | Msa0897460:CDS | 25.0% |
| ! | TGGAATGCTAAAACAATTTA+TGG | - | chr6_1:89685382-89685401 | Msa0897440:intron | 25.0% |
| ! | TATTATTGATGTTAACTAGG+AGG | - | chr6_1:89685425-89685444 | Msa0897440:intron | 25.0% |
| ! | CTTACTAAATCATAACTACT+AGG | + | chr6_1:89685543-89685562 | Msa0897460:intron | 25.0% |
| !!! | CAATATGTTGTTTCTATTGA+AGG | - | chr6_1:89685794-89685813 | Msa0897440:intron | 25.0% |
| ! | GAAAAAAATAGTTAGGGTTA+TGG | + | chr6_1:89685872-89685891 | Msa0897460:intron | 25.0% |
| ! | ACCATGTCATAACTATATAT+AGG | + | chr6_1:89686154-89686173 | Msa0897460:intron | 25.0% |
| ! | CCATGTCATAACTATATATA+GGG | + | chr6_1:89686155-89686174 | Msa0897460:intron | 25.0% |
| ! | ACTGAATATTTAACTCATGA+AGG | + | chr6_1:89686894-89686913 | Msa0897460:CDS | 25.0% |
| ATAAATTCCCTTACAAAGAC+TGG | - | chr6_1:89685402-89685421 | Msa0897440:intron | 30.0% | |
| GAATTAGTAGAGATGAAAGA+GGG | - | chr6_1:89685599-89685618 | Msa0897440:intron | 30.0% | |
| ! | TATGTAGTTTCTGATTTTGC+TGG | - | chr6_1:89685636-89685655 | Msa0897440:intron | 30.0% |
| !! | TATGTTGTTTCTATTGAAGG+AGG | - | chr6_1:89685791-89685810 | Msa0897440:intron | 30.0% |
| ! | TTTCACACAACCTTTTGTAA+GGG | - | chr6_1:89685828-89685847 | Msa0897440:intron | 30.0% |
| ! | TTTTCACACAACCTTTTGTA+AGG | - | chr6_1:89685829-89685848 | Msa0897440:intron | 30.0% |
| TTGTGTGAAAAACAGAGTTA+AGG | + | chr6_1:89685838-89685857 | Msa0897460:intron | 30.0% | |
| TGTGTGAAAAACAGAGTTAA+GGG | + | chr6_1:89685839-89685858 | Msa0897460:intron | 30.0% | |
| AAAAATAGTTAGGGTTATGG+AGG | + | chr6_1:89685875-89685894 | Msa0897460:intron | 30.0% | |
| TATGGAGGAGAAAACAAAAA+CGG | + | chr6_1:89685890-89685909 | Msa0897460:intron | 30.0% | |
| CCCTATATATAGTTATGACA+TGG | - | chr6_1:89686158-89686177 | Msa0897440:intron | 30.0% | |
| TTGAAATTGGGTTTACGAAT+CGG | - | chr6_1:89686207-89686226 | Msa0897440:intron | 30.0% | |
| CGGCTAACAAAATTGAAATT+GGG | - | chr6_1:89686219-89686238 | Msa0897440:intron | 30.0% | |
| TCGGCTAACAAAATTGAAAT+TGG | - | chr6_1:89686220-89686239 | Msa0897440:intron | 30.0% | |
| AACGTAATGAAAAACGAGTT+CGG | - | chr6_1:89686239-89686258 | Msa0897440:intron | 30.0% | |
| ! | TTTTCATTACGTTTCTCTAC+AGG | + | chr6_1:89686246-89686265 | Msa0897460:intron | 30.0% |
| ACCTTGATGTGTCAATTATT+TGG | + | chr6_1:89686383-89686402 | Msa0897460:intron | 30.0% | |
| ACCAAATAATTGACACATCA+AGG | - | chr6_1:89686387-89686406 | Msa0897440:intron | 30.0% | |
| ATTTCAATAGCATGATCGTA+CGG | - | chr6_1:89686552-89686571 | Msa0897440:intron | 30.0% | |
| ATTCATGTCAAGAAAAGACA+TGG | + | chr6_1:89686711-89686730 | Msa0897460:CDS | 30.0% | |
| !!! | GTGGTTTTGTACTGATTATA+GGG | + | chr6_1:89686740-89686759 | Msa0897460:CDS | 30.0% |
| ATAAATTCCCTTACAAAGAC+TGG | - | chr6_1:89685402-89685421 | Msa0897440:intron | 30.0% | |
| GAATTAGTAGAGATGAAAGA+GGG | - | chr6_1:89685599-89685618 | Msa0897440:intron | 30.0% | |
| ! | TATGTAGTTTCTGATTTTGC+TGG | - | chr6_1:89685636-89685655 | Msa0897440:intron | 30.0% |
| !! | TATGTTGTTTCTATTGAAGG+AGG | - | chr6_1:89685791-89685810 | Msa0897440:intron | 30.0% |
| ! | TTTCACACAACCTTTTGTAA+GGG | - | chr6_1:89685828-89685847 | Msa0897440:intron | 30.0% |
| ! | TTTTCACACAACCTTTTGTA+AGG | - | chr6_1:89685829-89685848 | Msa0897440:intron | 30.0% |
| TTGTGTGAAAAACAGAGTTA+AGG | + | chr6_1:89685838-89685857 | Msa0897460:intron | 30.0% | |
| TGTGTGAAAAACAGAGTTAA+GGG | + | chr6_1:89685839-89685858 | Msa0897460:intron | 30.0% | |
| AAAAATAGTTAGGGTTATGG+AGG | + | chr6_1:89685875-89685894 | Msa0897460:intron | 30.0% | |
| TATGGAGGAGAAAACAAAAA+CGG | + | chr6_1:89685890-89685909 | Msa0897460:intron | 30.0% | |
| CCCTATATATAGTTATGACA+TGG | - | chr6_1:89686158-89686177 | Msa0897440:intron | 30.0% | |
| TTGAAATTGGGTTTACGAAT+CGG | - | chr6_1:89686207-89686226 | Msa0897440:intron | 30.0% | |
| CGGCTAACAAAATTGAAATT+GGG | - | chr6_1:89686219-89686238 | Msa0897440:intron | 30.0% | |
| TCGGCTAACAAAATTGAAAT+TGG | - | chr6_1:89686220-89686239 | Msa0897440:intron | 30.0% | |
| AACGTAATGAAAAACGAGTT+CGG | - | chr6_1:89686239-89686258 | Msa0897440:intron | 30.0% | |
| ! | TTTTCATTACGTTTCTCTAC+AGG | + | chr6_1:89686246-89686265 | Msa0897460:intron | 30.0% |
| ACCTTGATGTGTCAATTATT+TGG | + | chr6_1:89686383-89686402 | Msa0897460:intron | 30.0% | |
| ACCAAATAATTGACACATCA+AGG | - | chr6_1:89686387-89686406 | Msa0897440:intron | 30.0% | |
| ATTTCAATAGCATGATCGTA+CGG | - | chr6_1:89686552-89686571 | Msa0897440:intron | 30.0% | |
| ATTCATGTCAAGAAAAGACA+TGG | + | chr6_1:89686711-89686730 | Msa0897460:CDS | 30.0% | |
| !!! | GTGGTTTTGTACTGATTATA+GGG | + | chr6_1:89686740-89686759 | Msa0897460:CDS | 30.0% |
| ! | TGTGAAGAGCATACTTGATT+TGG | + | chr6_1:89685239-89685258 | Msa0897460:CDS | 35.0% |
| TAATAATCTCCTCGCAGTAA+TGG | - | chr6_1:89685357-89685376 | Msa0897440:intron | 35.0% | |
| TTAGCATTCCAGTCTTTGTA+AGG | + | chr6_1:89685391-89685410 | Msa0897460:intron | 35.0% | |
| TAGCATTCCAGTCTTTGTAA+GGG | + | chr6_1:89685392-89685411 | Msa0897460:intron | 35.0% | |
| GGAATTAGTAGAGATGAAAG+AGG | - | chr6_1:89685600-89685619 | Msa0897440:intron | 35.0% | |
| TTTGCTGGAACTAACAGATA+GGG | - | chr6_1:89685621-89685640 | Msa0897440:intron | 35.0% | |
| ! | TTTTGCTGGAACTAACAGAT+AGG | - | chr6_1:89685622-89685641 | Msa0897440:intron | 35.0% |
| TACATAGCTTTCTTGACATC+CGG | + | chr6_1:89685650-89685669 | Msa0897460:intron | 35.0% | |
| TATTGAAGGAGGAACAAGAA+AGG | - | chr6_1:89685780-89685799 | Msa0897440:intron | 35.0% | |
| AATGTTGAAGCCCTTACAAA+AGG | + | chr6_1:89685815-89685834 | Msa0897460:intron | 35.0% | |
| ATGGAGGAGAAAACAAAAAC+GGG | + | chr6_1:89685891-89685910 | Msa0897460:intron | 35.0% | |
| ! | GAGAAAACAAAAACGGGTTT+AGG | + | chr6_1:89685897-89685916 | Msa0897460:intron | 35.0% |
| !! | TTCCATTCTCAGCTTTGAAA+CGG | - | chr6_1:89686057-89686076 | Msa0897440:intron | 35.0% |
| AGAATGGAAGAATGAAGAGA+GGG | + | chr6_1:89686068-89686087 | Msa0897460:CDS | 35.0% | |
| !!! | GGTTAGGTTTTTTTTCGTGA+AGG | + | chr6_1:89686109-89686128 | Msa0897460:intron | 35.0% |
| !! | AGGGAACCGTGTTTTTAAAT+TGG | + | chr6_1:89686174-89686193 | Msa0897460:intron | 35.0% |
| TCGGGTCCAATTTAAAAACA+CGG | - | chr6_1:89686183-89686202 | Msa0897440:intron | 35.0% | |
| TGAAATTGGGTTTACGAATC+GGG | - | chr6_1:89686206-89686225 | Msa0897440:intron | 35.0% | |
| !! | GTATGTTGATCTGTTTTGAG+AGG | + | chr6_1:89686503-89686522 | Msa0897460:intron | 35.0% |
| CGATCATGCTATTGAAATCA+AGG | + | chr6_1:89686554-89686573 | Msa0897460:intron | 35.0% | |
| TCATGCTATTGAAATCAAGG+AGG | + | chr6_1:89686557-89686576 | Msa0897460:intron | 35.0% | |
| GCTACAGACATGTTAATATC+AGG | + | chr6_1:89686648-89686667 | Msa0897460:CDS | 35.0% | |
| TGTTAATATCAGGACTCATC+AGG | + | chr6_1:89686658-89686677 | Msa0897460:CDS | 35.0% | |
| !!! | GGTGGTTTTGTACTGATTAT+AGG | + | chr6_1:89686739-89686758 | Msa0897460:CDS | 35.0% |
| AACTCATCAATCACTGGAAT+TGG | - | chr6_1:89686795-89686814 | Msa0897440:intron | 35.0% | |
| CATCAGATTCAAACGAAAGA+GGG | + | chr6_1:89686858-89686877 | Msa0897460:CDS | 35.0% | |
| ! | TGTGAAGAGCATACTTGATT+TGG | + | chr6_1:89685239-89685258 | Msa0897460:CDS | 35.0% |
| TAATAATCTCCTCGCAGTAA+TGG | - | chr6_1:89685357-89685376 | Msa0897440:intron | 35.0% | |
| TTAGCATTCCAGTCTTTGTA+AGG | + | chr6_1:89685391-89685410 | Msa0897460:intron | 35.0% | |
| TAGCATTCCAGTCTTTGTAA+GGG | + | chr6_1:89685392-89685411 | Msa0897460:intron | 35.0% | |
| GGAATTAGTAGAGATGAAAG+AGG | - | chr6_1:89685600-89685619 | Msa0897440:intron | 35.0% | |
| TTTGCTGGAACTAACAGATA+GGG | - | chr6_1:89685621-89685640 | Msa0897440:intron | 35.0% | |
| ! | TTTTGCTGGAACTAACAGAT+AGG | - | chr6_1:89685622-89685641 | Msa0897440:intron | 35.0% |
| TACATAGCTTTCTTGACATC+CGG | + | chr6_1:89685650-89685669 | Msa0897460:intron | 35.0% | |
| TATTGAAGGAGGAACAAGAA+AGG | - | chr6_1:89685780-89685799 | Msa0897440:intron | 35.0% | |
| AATGTTGAAGCCCTTACAAA+AGG | + | chr6_1:89685815-89685834 | Msa0897460:intron | 35.0% | |
| ATGGAGGAGAAAACAAAAAC+GGG | + | chr6_1:89685891-89685910 | Msa0897460:intron | 35.0% | |
| ! | GAGAAAACAAAAACGGGTTT+AGG | + | chr6_1:89685897-89685916 | Msa0897460:intron | 35.0% |
| !! | TTCCATTCTCAGCTTTGAAA+CGG | - | chr6_1:89686057-89686076 | Msa0897440:intron | 35.0% |
| AGAATGGAAGAATGAAGAGA+GGG | + | chr6_1:89686068-89686087 | Msa0897460:CDS | 35.0% | |
| !!! | GGTTAGGTTTTTTTTCGTGA+AGG | + | chr6_1:89686109-89686128 | Msa0897460:intron | 35.0% |
| !! | AGGGAACCGTGTTTTTAAAT+TGG | + | chr6_1:89686174-89686193 | Msa0897460:intron | 35.0% |
| TCGGGTCCAATTTAAAAACA+CGG | - | chr6_1:89686183-89686202 | Msa0897440:intron | 35.0% | |
| TGAAATTGGGTTTACGAATC+GGG | - | chr6_1:89686206-89686225 | Msa0897440:intron | 35.0% | |
| !! | GTATGTTGATCTGTTTTGAG+AGG | + | chr6_1:89686503-89686522 | Msa0897460:intron | 35.0% |
| CGATCATGCTATTGAAATCA+AGG | + | chr6_1:89686554-89686573 | Msa0897460:intron | 35.0% | |
| TCATGCTATTGAAATCAAGG+AGG | + | chr6_1:89686557-89686576 | Msa0897460:intron | 35.0% | |
| GCTACAGACATGTTAATATC+AGG | + | chr6_1:89686648-89686667 | Msa0897460:CDS | 35.0% | |
| TGTTAATATCAGGACTCATC+AGG | + | chr6_1:89686658-89686677 | Msa0897460:CDS | 35.0% | |
| !!! | GGTGGTTTTGTACTGATTAT+AGG | + | chr6_1:89686739-89686758 | Msa0897460:CDS | 35.0% |
| AACTCATCAATCACTGGAAT+TGG | - | chr6_1:89686795-89686814 | Msa0897440:intron | 35.0% | |
| CATCAGATTCAAACGAAAGA+GGG | + | chr6_1:89686858-89686877 | Msa0897460:CDS | 35.0% | |
| TGGAGGAAAAGATTTACCAG+AGG | + | chr6_1:89685214-89685233 | Msa0897460:CDS | 40.0% | |
| GGAGGAAAAGATTTACCAGA+GGG | + | chr6_1:89685215-89685234 | Msa0897460:CDS | 40.0% | |
| GAGGAAAAGATTTACCAGAG+GGG | + | chr6_1:89685216-89685235 | Msa0897460:CDS | 40.0% | |
| !! | GAGCATACTTGATTTGGAGT+TGG | + | chr6_1:89685245-89685264 | Msa0897460:CDS | 40.0% |
| !! | CATACTTGATTTGGAGTTGG+AGG | + | chr6_1:89685248-89685267 | Msa0897460:CDS | 40.0% |
| AGAACCATTCACATCTCAGT+GGG | + | chr6_1:89685293-89685312 | Msa0897460:intron | 40.0% | |
| TTGTAAGTTCCATTACTGCG+AGG | + | chr6_1:89685345-89685364 | Msa0897460:intron | 40.0% | |
| GTAGAGATGAAAGAGGGAAT+TGG | - | chr6_1:89685593-89685612 | Msa0897440:intron | 40.0% | |
| AGATGTTCAACCTTGTCGAA+TGG | - | chr6_1:89685681-89685700 | Msa0897440:intron | 40.0% | |
| !! | ATACAGAGAGAGGCATCATT+TGG | - | chr6_1:89685717-89685736 | Msa0897440:intron | 40.0% |
| GTGAAAAACAGAGTTAAGGG+AGG | + | chr6_1:89685842-89685861 | Msa0897460:intron | 40.0% | |
| ! | AACAAAAACGGGTTTAGGTG+AGG | + | chr6_1:89685902-89685921 | Msa0897460:intron | 40.0% |
| ! | ACAAAAACGGGTTTAGGTGA+GGG | + | chr6_1:89685903-89685922 | Msa0897460:intron | 40.0% |
| ACAACCTTAACCAAGAACGA+CGG | - | chr6_1:89686001-89686020 | Msa0897440:intron | 40.0% | |
| ! | AGGTTGTTTCAAAACACCGA+AGG | + | chr6_1:89686014-89686033 | Msa0897460:CDS | 40.0% |
| ! | GGTTGTTTCAAAACACCGAA+GGG | + | chr6_1:89686015-89686034 | Msa0897460:CDS | 40.0% |
| GAGAATGGAAGAATGAAGAG+AGG | + | chr6_1:89686067-89686086 | Msa0897460:CDS | 40.0% | |
| AAGAATGAAGAGAGGGAAGA+CGG | + | chr6_1:89686075-89686094 | Msa0897460:CDS | 40.0% | |
| ! | ATTTTGTGTGTTTTGTGGCC+AGG | - | chr6_1:89686280-89686299 | Msa0897440:intron | 40.0% |
| !! | GGTCGATTTTGTGTGTTTTG+TGG | - | chr6_1:89686285-89686304 | Msa0897440:intron | 40.0% |
| AAATCGACCCAGAACAAGTA+CGG | + | chr6_1:89686296-89686315 | Msa0897460:intron | 40.0% | |
| AAAAATGAGTGCCAGGTCAT+AGG | - | chr6_1:89686360-89686379 | Msa0897440:intron | 40.0% | |
| AGGTAGTAAAAATGAGTGCC+AGG | - | chr6_1:89686367-89686386 | Msa0897440:intron | 40.0% | |
| ! | GTTTGGTTTATACACACCTG+AGG | + | chr6_1:89686442-89686461 | Msa0897460:CDS | 40.0% |
| TATACACACCTGAGGTGAAA+AGG | + | chr6_1:89686450-89686469 | Msa0897460:CDS | 40.0% | |
| ATACACACCTGAGGTGAAAA+GGG | + | chr6_1:89686451-89686470 | Msa0897460:CDS | 40.0% | |
| TGCTATTGAAATCAAGGAGG+CGG | + | chr6_1:89686560-89686579 | Msa0897460:intron | 40.0% | |
| !! | TATCTTTAGGGTCGGATGTT+GGG | - | chr6_1:89686594-89686613 | Msa0897440:intron | 40.0% |
| !! | CTAGCATATCGACTTACAGT+GGG | - | chr6_1:89686684-89686703 | Msa0897440:intron | 40.0% |
| TCAAGAAAAGACATGGCAGT+TGG | + | chr6_1:89686718-89686737 | Msa0897460:CDS | 40.0% | |
| TTCCAGTGATTGATGAGTTG+TGG | + | chr6_1:89686796-89686815 | Msa0897460:CDS | 40.0% | |
| TCCAGTGATTGATGAGTTGT+GGG | + | chr6_1:89686797-89686816 | Msa0897460:CDS | 40.0% | |
| GCATCAGATTCAAACGAAAG+AGG | + | chr6_1:89686857-89686876 | Msa0897460:CDS | 40.0% | |
| TGGAGGAAAAGATTTACCAG+AGG | + | chr6_1:89685214-89685233 | Msa0897460:CDS | 40.0% | |
| GGAGGAAAAGATTTACCAGA+GGG | + | chr6_1:89685215-89685234 | Msa0897460:CDS | 40.0% | |
| GAGGAAAAGATTTACCAGAG+GGG | + | chr6_1:89685216-89685235 | Msa0897460:CDS | 40.0% | |
| !! | GAGCATACTTGATTTGGAGT+TGG | + | chr6_1:89685245-89685264 | Msa0897460:CDS | 40.0% |
| !! | CATACTTGATTTGGAGTTGG+AGG | + | chr6_1:89685248-89685267 | Msa0897460:CDS | 40.0% |
| AGAACCATTCACATCTCAGT+GGG | + | chr6_1:89685293-89685312 | Msa0897460:intron | 40.0% | |
| TTGTAAGTTCCATTACTGCG+AGG | + | chr6_1:89685345-89685364 | Msa0897460:intron | 40.0% | |
| GTAGAGATGAAAGAGGGAAT+TGG | - | chr6_1:89685593-89685612 | Msa0897440:intron | 40.0% | |
| AGATGTTCAACCTTGTCGAA+TGG | - | chr6_1:89685681-89685700 | Msa0897440:intron | 40.0% | |
| !! | ATACAGAGAGAGGCATCATT+TGG | - | chr6_1:89685717-89685736 | Msa0897440:intron | 40.0% |
| GTGAAAAACAGAGTTAAGGG+AGG | + | chr6_1:89685842-89685861 | Msa0897460:intron | 40.0% | |
| ! | AACAAAAACGGGTTTAGGTG+AGG | + | chr6_1:89685902-89685921 | Msa0897460:intron | 40.0% |
| ! | ACAAAAACGGGTTTAGGTGA+GGG | + | chr6_1:89685903-89685922 | Msa0897460:intron | 40.0% |
| ACAACCTTAACCAAGAACGA+CGG | - | chr6_1:89686001-89686020 | Msa0897440:intron | 40.0% | |
| ! | AGGTTGTTTCAAAACACCGA+AGG | + | chr6_1:89686014-89686033 | Msa0897460:CDS | 40.0% |
| ! | GGTTGTTTCAAAACACCGAA+GGG | + | chr6_1:89686015-89686034 | Msa0897460:CDS | 40.0% |
| GAGAATGGAAGAATGAAGAG+AGG | + | chr6_1:89686067-89686086 | Msa0897460:CDS | 40.0% | |
| AAGAATGAAGAGAGGGAAGA+CGG | + | chr6_1:89686075-89686094 | Msa0897460:CDS | 40.0% | |
| ! | ATTTTGTGTGTTTTGTGGCC+AGG | - | chr6_1:89686280-89686299 | Msa0897440:intron | 40.0% |
| !! | GGTCGATTTTGTGTGTTTTG+TGG | - | chr6_1:89686285-89686304 | Msa0897440:intron | 40.0% |
| AAATCGACCCAGAACAAGTA+CGG | + | chr6_1:89686296-89686315 | Msa0897460:intron | 40.0% | |
| AAAAATGAGTGCCAGGTCAT+AGG | - | chr6_1:89686360-89686379 | Msa0897440:intron | 40.0% | |
| AGGTAGTAAAAATGAGTGCC+AGG | - | chr6_1:89686367-89686386 | Msa0897440:intron | 40.0% | |
| ! | GTTTGGTTTATACACACCTG+AGG | + | chr6_1:89686442-89686461 | Msa0897460:CDS | 40.0% |
| TATACACACCTGAGGTGAAA+AGG | + | chr6_1:89686450-89686469 | Msa0897460:CDS | 40.0% | |
| ATACACACCTGAGGTGAAAA+GGG | + | chr6_1:89686451-89686470 | Msa0897460:CDS | 40.0% | |
| TGCTATTGAAATCAAGGAGG+CGG | + | chr6_1:89686560-89686579 | Msa0897460:intron | 40.0% | |
| !! | TATCTTTAGGGTCGGATGTT+GGG | - | chr6_1:89686594-89686613 | Msa0897440:intron | 40.0% |
| !! | CTAGCATATCGACTTACAGT+GGG | - | chr6_1:89686684-89686703 | Msa0897440:intron | 40.0% |
| TCAAGAAAAGACATGGCAGT+TGG | + | chr6_1:89686718-89686737 | Msa0897460:CDS | 40.0% | |
| TTCCAGTGATTGATGAGTTG+TGG | + | chr6_1:89686796-89686815 | Msa0897460:CDS | 40.0% | |
| TCCAGTGATTGATGAGTTGT+GGG | + | chr6_1:89686797-89686816 | Msa0897460:CDS | 40.0% | |
| GCATCAGATTCAAACGAAAG+AGG | + | chr6_1:89686857-89686876 | Msa0897460:CDS | 40.0% | |
| !! | ACTTGATTTGGAGTTGGAGG+TGG | + | chr6_1:89685251-89685270 | Msa0897460:intron | 45.0% |
| !! | CTTGATTTGGAGTTGGAGGT+GGG | + | chr6_1:89685252-89685271 | Msa0897460:intron | 45.0% |
| GAGAACCATTCACATCTCAG+TGG | + | chr6_1:89685292-89685311 | Msa0897460:intron | 45.0% | |
| GAACCATTCACATCTCAGTG+GGG | + | chr6_1:89685294-89685313 | Msa0897460:intron | 45.0% | |
| AACCATTCACATCTCAGTGG+GGG | + | chr6_1:89685295-89685314 | Msa0897460:intron | 45.0% | |
| ATAGCTTTCTTGACATCCGG+AGG | + | chr6_1:89685653-89685672 | Msa0897460:intron | 45.0% | |
| TTCCGCGAGTGTTCTTCTAT+GGG | - | chr6_1:89685746-89685765 | Msa0897440:intron | 45.0% | |
| ATTCCGCGAGTGTTCTTCTA+TGG | - | chr6_1:89685747-89685766 | Msa0897440:intron | 45.0% | |
| TCAAAACACCGAAGGGAGAA+AGG | + | chr6_1:89686022-89686041 | Msa0897460:CDS | 45.0% | |
| ATTGGGTTTACGAATCGGGT+CGG | - | chr6_1:89686202-89686221 | Msa0897440:intron | 45.0% | |
| TTGGTATTCAGAGCTCAACC+TGG | + | chr6_1:89686402-89686421 | Msa0897460:intron | 45.0% | |
| TGGTATTCAGAGCTCAACCT+GGG | + | chr6_1:89686403-89686422 | Msa0897460:intron | 45.0% | |
| ! | GGAGAGTATGCTGATCTGTT+TGG | + | chr6_1:89686425-89686444 | Msa0897460:CDS | 45.0% |
| !! | GTATCTTTAGGGTCGGATGT+TGG | - | chr6_1:89686595-89686614 | Msa0897440:intron | 45.0% |
| TGACTGTGCGGGTATCTTTA+GGG | - | chr6_1:89686606-89686625 | Msa0897440:intron | 45.0% | |
| ATTGCTTCCTTCTGACTGTG+CGG | - | chr6_1:89686618-89686637 | Msa0897440:intron | 45.0% | |
| !! | GCTAGCATATCGACTTACAG+TGG | - | chr6_1:89686685-89686704 | Msa0897440:intron | 45.0% |
| AGAAAAGACATGGCAGTTGG+TGG | + | chr6_1:89686721-89686740 | Msa0897460:CDS | 45.0% | |
| CCAGTGATTGATGAGTTGTG+GGG | + | chr6_1:89686798-89686817 | Msa0897460:CDS | 45.0% | |
| !! | ACTTGATTTGGAGTTGGAGG+TGG | + | chr6_1:89685251-89685270 | Msa0897460:intron | 45.0% |
| !! | CTTGATTTGGAGTTGGAGGT+GGG | + | chr6_1:89685252-89685271 | Msa0897460:intron | 45.0% |
| GAGAACCATTCACATCTCAG+TGG | + | chr6_1:89685292-89685311 | Msa0897460:intron | 45.0% | |
| GAACCATTCACATCTCAGTG+GGG | + | chr6_1:89685294-89685313 | Msa0897460:intron | 45.0% | |
| AACCATTCACATCTCAGTGG+GGG | + | chr6_1:89685295-89685314 | Msa0897460:intron | 45.0% | |
| ATAGCTTTCTTGACATCCGG+AGG | + | chr6_1:89685653-89685672 | Msa0897460:intron | 45.0% | |
| TTCCGCGAGTGTTCTTCTAT+GGG | - | chr6_1:89685746-89685765 | Msa0897440:intron | 45.0% | |
| ATTCCGCGAGTGTTCTTCTA+TGG | - | chr6_1:89685747-89685766 | Msa0897440:intron | 45.0% | |
| TCAAAACACCGAAGGGAGAA+AGG | + | chr6_1:89686022-89686041 | Msa0897460:CDS | 45.0% | |
| ATTGGGTTTACGAATCGGGT+CGG | - | chr6_1:89686202-89686221 | Msa0897440:intron | 45.0% | |
| TTGGTATTCAGAGCTCAACC+TGG | + | chr6_1:89686402-89686421 | Msa0897460:intron | 45.0% | |
| TGGTATTCAGAGCTCAACCT+GGG | + | chr6_1:89686403-89686422 | Msa0897460:intron | 45.0% | |
| ! | GGAGAGTATGCTGATCTGTT+TGG | + | chr6_1:89686425-89686444 | Msa0897460:CDS | 45.0% |
| !! | GTATCTTTAGGGTCGGATGT+TGG | - | chr6_1:89686595-89686614 | Msa0897440:intron | 45.0% |
| TGACTGTGCGGGTATCTTTA+GGG | - | chr6_1:89686606-89686625 | Msa0897440:intron | 45.0% | |
| ATTGCTTCCTTCTGACTGTG+CGG | - | chr6_1:89686618-89686637 | Msa0897440:intron | 45.0% | |
| !! | GCTAGCATATCGACTTACAG+TGG | - | chr6_1:89686685-89686704 | Msa0897440:intron | 45.0% |
| AGAAAAGACATGGCAGTTGG+TGG | + | chr6_1:89686721-89686740 | Msa0897460:CDS | 45.0% | |
| CCAGTGATTGATGAGTTGTG+GGG | + | chr6_1:89686798-89686817 | Msa0897460:CDS | 45.0% | |
| TACCCCCACTGAGATGTGAA+TGG | - | chr6_1:89685300-89685319 | Msa0897440:intron | 50.0% | |
| ACCTTGTCGAATGGTTCCTC+CGG | - | chr6_1:89685672-89685691 | Msa0897440:intron | 50.0% | |
| AGGCATCATTTGGCTGGAAC+TGG | - | chr6_1:89685707-89685726 | Msa0897440:intron | 50.0% | |
| !! | AGAGAGAGGCATCATTTGGC+TGG | - | chr6_1:89685713-89685732 | Msa0897440:intron | 50.0% |
| CTCCCATAGAAGAACACTCG+CGG | + | chr6_1:89685741-89685760 | Msa0897460:intron | 50.0% | |
| TGAGGGAAGAGAGTGAACGA+CGG | + | chr6_1:89685920-89685939 | Msa0897460:intron | 50.0% | |
| ATGGCCGTCGTTCTTGGTTA+AGG | + | chr6_1:89685994-89686013 | Msa0897460:CDS | 50.0% | |
| AAACACCGAAGGGAGAAAGG+CGG | + | chr6_1:89686025-89686044 | Msa0897460:CDS | 50.0% | |
| GGCCGTTTCAAAGCTGAGAA+TGG | + | chr6_1:89686052-89686071 | Msa0897460:CDS | 50.0% | |
| AATGAAGAGAGGGAAGACGG+CGG | + | chr6_1:89686078-89686097 | Msa0897460:CDS | 50.0% | |
| TTGGGTTTACGAATCGGGTC+GGG | - | chr6_1:89686201-89686220 | Msa0897440:intron | 50.0% | |
| TCTCTACAGGAACTCGATCC+TGG | + | chr6_1:89686259-89686278 | Msa0897460:intron | 50.0% | |
| TGAGTGCCAGGTCATAGGAT+CGG | - | chr6_1:89686355-89686374 | Msa0897440:intron | 50.0% | |
| GGTATTCAGAGCTCAACCTG+GGG | + | chr6_1:89686404-89686423 | Msa0897460:intron | 50.0% | |
| ACACCTGAGGTGAAAAGGGA+AGG | + | chr6_1:89686455-89686474 | Msa0897460:CDS | 50.0% | |
| AGGTGAAAAGGGAAGGAGCA+GGG | + | chr6_1:89686462-89686481 | Msa0897460:CDS | 50.0% | |
| !! | TGTGCGGGTATCTTTAGGGT+CGG | - | chr6_1:89686602-89686621 | Msa0897440:intron | 50.0% |
| CTGACTGTGCGGGTATCTTT+AGG | - | chr6_1:89686607-89686626 | Msa0897440:intron | 50.0% | |
| AAGATACCCGCACAGTCAGA+AGG | + | chr6_1:89686608-89686627 | Msa0897460:intron | 50.0% | |
| TTGCTTCCTTCTGACTGTGC+GGG | - | chr6_1:89686617-89686636 | Msa0897440:intron | 50.0% | |
| CCCCACAACTCATCAATCAC+TGG | - | chr6_1:89686801-89686820 | Msa0897440:intron | 50.0% | |
| GATTGATGAGTTGTGGGGAG+CGG | + | chr6_1:89686803-89686822 | Msa0897460:CDS | 50.0% | |
| TACCCCCACTGAGATGTGAA+TGG | - | chr6_1:89685300-89685319 | Msa0897440:intron | 50.0% | |
| ACCTTGTCGAATGGTTCCTC+CGG | - | chr6_1:89685672-89685691 | Msa0897440:intron | 50.0% | |
| AGGCATCATTTGGCTGGAAC+TGG | - | chr6_1:89685707-89685726 | Msa0897440:intron | 50.0% | |
| !! | AGAGAGAGGCATCATTTGGC+TGG | - | chr6_1:89685713-89685732 | Msa0897440:intron | 50.0% |
| CTCCCATAGAAGAACACTCG+CGG | + | chr6_1:89685741-89685760 | Msa0897460:intron | 50.0% | |
| TGAGGGAAGAGAGTGAACGA+CGG | + | chr6_1:89685920-89685939 | Msa0897460:intron | 50.0% | |
| ATGGCCGTCGTTCTTGGTTA+AGG | + | chr6_1:89685994-89686013 | Msa0897460:CDS | 50.0% | |
| AAACACCGAAGGGAGAAAGG+CGG | + | chr6_1:89686025-89686044 | Msa0897460:CDS | 50.0% | |
| GGCCGTTTCAAAGCTGAGAA+TGG | + | chr6_1:89686052-89686071 | Msa0897460:CDS | 50.0% | |
| AATGAAGAGAGGGAAGACGG+CGG | + | chr6_1:89686078-89686097 | Msa0897460:CDS | 50.0% | |
| TTGGGTTTACGAATCGGGTC+GGG | - | chr6_1:89686201-89686220 | Msa0897440:intron | 50.0% | |
| TCTCTACAGGAACTCGATCC+TGG | + | chr6_1:89686259-89686278 | Msa0897460:intron | 50.0% | |
| TGAGTGCCAGGTCATAGGAT+CGG | - | chr6_1:89686355-89686374 | Msa0897440:intron | 50.0% | |
| GGTATTCAGAGCTCAACCTG+GGG | + | chr6_1:89686404-89686423 | Msa0897460:intron | 50.0% | |
| ACACCTGAGGTGAAAAGGGA+AGG | + | chr6_1:89686455-89686474 | Msa0897460:CDS | 50.0% | |
| AGGTGAAAAGGGAAGGAGCA+GGG | + | chr6_1:89686462-89686481 | Msa0897460:CDS | 50.0% | |
| !! | TGTGCGGGTATCTTTAGGGT+CGG | - | chr6_1:89686602-89686621 | Msa0897440:intron | 50.0% |
| CTGACTGTGCGGGTATCTTT+AGG | - | chr6_1:89686607-89686626 | Msa0897440:intron | 50.0% | |
| AAGATACCCGCACAGTCAGA+AGG | + | chr6_1:89686608-89686627 | Msa0897460:intron | 50.0% | |
| TTGCTTCCTTCTGACTGTGC+GGG | - | chr6_1:89686617-89686636 | Msa0897440:intron | 50.0% | |
| CCCCACAACTCATCAATCAC+TGG | - | chr6_1:89686801-89686820 | Msa0897440:intron | 50.0% | |
| GATTGATGAGTTGTGGGGAG+CGG | + | chr6_1:89686803-89686822 | Msa0897460:CDS | 50.0% | |
| GTATGCTCTTCACACCCCTC+TGG | - | chr6_1:89685233-89685252 | Msa0897440:intron | 55.0% | |
| ! | TTTGGAGTTGGAGGTGGGAC+TGG | + | chr6_1:89685257-89685276 | Msa0897460:intron | 55.0% |
| TCCGGAGGAACCATTCGACA+AGG | + | chr6_1:89685668-89685687 | Msa0897460:intron | 55.0% | |
| ! | TGGGAGGTGCATACAGAGAG+AGG | - | chr6_1:89685727-89685746 | Msa0897440:intron | 55.0% |
| CGCGAGTGTTCTTCTATGGG+AGG | - | chr6_1:89685743-89685762 | Msa0897440:intron | 55.0% | |
| GCGAGAACTTCGCCGGAAAA+GGG | + | chr6_1:89685942-89685961 | Msa0897460:CDS | 55.0% | |
| TGCCACTGTTTCGCGAACGA+CGG | - | chr6_1:89685975-89685994 | Msa0897440:intron | 55.0% | |
| TCGTTCGCGAAACAGTGGCA+TGG | + | chr6_1:89685975-89685994 | Msa0897460:CDS | 55.0% | |
| !!! | GACGGCGGCTGTTTTTGGTT+AGG | + | chr6_1:89686093-89686112 | Msa0897460:intron | 55.0% |
| GCGTGCTCCGTACTTGTTCT+GGG | - | chr6_1:89686306-89686325 | Msa0897440:intron | 55.0% | |
| TCCTATGTGCCACACCCTCA+CGG | - | chr6_1:89686328-89686347 | Msa0897440:intron | 55.0% | |
| GATGAGCCGATCCTATGACC+TGG | + | chr6_1:89686346-89686365 | Msa0897460:intron | 55.0% | |
| CAGATCAGCATACTCTCCCC+AGG | - | chr6_1:89686423-89686442 | Msa0897440:intron | 55.0% | |
| ! | GCTCCTTCCCTTTTCACCTC+AGG | - | chr6_1:89686461-89686480 | Msa0897440:intron | 55.0% |
| GAGGTGAAAAGGGAAGGAGC+AGG | + | chr6_1:89686461-89686480 | Msa0897460:CDS | 55.0% | |
| GGTGAAAAGGGAAGGAGCAG+GGG | + | chr6_1:89686463-89686482 | Msa0897460:CDS | 55.0% | |
| AAAAGGGAAGGAGCAGGGGT+TGG | + | chr6_1:89686467-89686486 | Msa0897460:CDS | 55.0% | |
| GTATGCTCTTCACACCCCTC+TGG | - | chr6_1:89685233-89685252 | Msa0897440:intron | 55.0% | |
| ! | TTTGGAGTTGGAGGTGGGAC+TGG | + | chr6_1:89685257-89685276 | Msa0897460:intron | 55.0% |
| TCCGGAGGAACCATTCGACA+AGG | + | chr6_1:89685668-89685687 | Msa0897460:intron | 55.0% | |
| ! | TGGGAGGTGCATACAGAGAG+AGG | - | chr6_1:89685727-89685746 | Msa0897440:intron | 55.0% |
| CGCGAGTGTTCTTCTATGGG+AGG | - | chr6_1:89685743-89685762 | Msa0897440:intron | 55.0% | |
| GCGAGAACTTCGCCGGAAAA+GGG | + | chr6_1:89685942-89685961 | Msa0897460:CDS | 55.0% | |
| TGCCACTGTTTCGCGAACGA+CGG | - | chr6_1:89685975-89685994 | Msa0897440:intron | 55.0% | |
| TCGTTCGCGAAACAGTGGCA+TGG | + | chr6_1:89685975-89685994 | Msa0897460:CDS | 55.0% | |
| !!! | GACGGCGGCTGTTTTTGGTT+AGG | + | chr6_1:89686093-89686112 | Msa0897460:intron | 55.0% |
| GCGTGCTCCGTACTTGTTCT+GGG | - | chr6_1:89686306-89686325 | Msa0897440:intron | 55.0% | |
| TCCTATGTGCCACACCCTCA+CGG | - | chr6_1:89686328-89686347 | Msa0897440:intron | 55.0% | |
| GATGAGCCGATCCTATGACC+TGG | + | chr6_1:89686346-89686365 | Msa0897460:intron | 55.0% | |
| CAGATCAGCATACTCTCCCC+AGG | - | chr6_1:89686423-89686442 | Msa0897440:intron | 55.0% | |
| ! | GCTCCTTCCCTTTTCACCTC+AGG | - | chr6_1:89686461-89686480 | Msa0897440:intron | 55.0% |
| GAGGTGAAAAGGGAAGGAGC+AGG | + | chr6_1:89686461-89686480 | Msa0897460:CDS | 55.0% | |
| GGTGAAAAGGGAAGGAGCAG+GGG | + | chr6_1:89686463-89686482 | Msa0897460:CDS | 55.0% | |
| AAAAGGGAAGGAGCAGGGGT+TGG | + | chr6_1:89686467-89686486 | Msa0897460:CDS | 55.0% | |
| AACGACGGCGAGAACTTCGC+CGG | + | chr6_1:89685935-89685954 | Msa0897460:CDS | 60.0% | |
| GGCGAGAACTTCGCCGGAAA+AGG | + | chr6_1:89685941-89685960 | Msa0897460:CDS | 60.0% | |
| CTTCGCCGGAAAAGGGAACC+CGG | + | chr6_1:89685949-89685968 | Msa0897460:CDS | 60.0% | |
| ACTGTTTCGCGAACGACGGC+CGG | - | chr6_1:89685971-89685990 | Msa0897440:intron | 60.0% | |
| AGTGGCATGGCCGTCGTTCT+TGG | + | chr6_1:89685988-89686007 | Msa0897460:CDS | 60.0% | |
| !! | GGGAAGACGGCGGCTGTTTT+TGG | + | chr6_1:89686088-89686107 | Msa0897460:intron | 60.0% |
| GGCGTGCTCCGTACTTGTTC+TGG | - | chr6_1:89686307-89686326 | Msa0897440:intron | 60.0% | |
| AAGTACGGAGCACGCCGTGA+GGG | + | chr6_1:89686311-89686330 | Msa0897460:intron | 60.0% | |
| TGATCGTACGGTCTGCGTGG+AGG | - | chr6_1:89686540-89686559 | Msa0897440:intron | 60.0% | |
| GCATGATCGTACGGTCTGCG+TGG | - | chr6_1:89686543-89686562 | Msa0897440:intron | 60.0% | |
| AACGACGGCGAGAACTTCGC+CGG | + | chr6_1:89685935-89685954 | Msa0897460:CDS | 60.0% | |
| GGCGAGAACTTCGCCGGAAA+AGG | + | chr6_1:89685941-89685960 | Msa0897460:CDS | 60.0% | |
| CTTCGCCGGAAAAGGGAACC+CGG | + | chr6_1:89685949-89685968 | Msa0897460:CDS | 60.0% | |
| ACTGTTTCGCGAACGACGGC+CGG | - | chr6_1:89685971-89685990 | Msa0897440:intron | 60.0% | |
| AGTGGCATGGCCGTCGTTCT+TGG | + | chr6_1:89685988-89686007 | Msa0897460:CDS | 60.0% | |
| !! | GGGAAGACGGCGGCTGTTTT+TGG | + | chr6_1:89686088-89686107 | Msa0897460:intron | 60.0% |
| GGCGTGCTCCGTACTTGTTC+TGG | - | chr6_1:89686307-89686326 | Msa0897440:intron | 60.0% | |
| AAGTACGGAGCACGCCGTGA+GGG | + | chr6_1:89686311-89686330 | Msa0897460:intron | 60.0% | |
| TGATCGTACGGTCTGCGTGG+AGG | - | chr6_1:89686540-89686559 | Msa0897440:intron | 60.0% | |
| GCATGATCGTACGGTCTGCG+TGG | - | chr6_1:89686543-89686562 | Msa0897440:intron | 60.0% | |
| ! | GACGGCCGGGTTCCCTTTTC+CGG | - | chr6_1:89685957-89685976 | Msa0897440:intron | 65.0% |
| CTGTTTCGCGAACGACGGCC+GGG | - | chr6_1:89685970-89685989 | Msa0897440:intron | 65.0% | |
| GGCCGTCGTTCGCGAAACAG+TGG | + | chr6_1:89685970-89685989 | Msa0897460:CDS | 65.0% | |
| CACCGAAGGGAGAAAGGCGG+CGG | + | chr6_1:89686028-89686047 | Msa0897460:CDS | 65.0% | |
| CAAGTACGGAGCACGCCGTG+AGG | + | chr6_1:89686310-89686329 | Msa0897460:intron | 65.0% | |
| ! | GCCGTGAGGGTGTGGCACAT+AGG | + | chr6_1:89686324-89686343 | Msa0897460:intron | 65.0% |
| AGGGAAGGAGCAGGGGTTGG+AGG | + | chr6_1:89686470-89686489 | Msa0897460:CDS | 65.0% | |
| ! | GACGGCCGGGTTCCCTTTTC+CGG | - | chr6_1:89685957-89685976 | Msa0897440:intron | 65.0% |
| CTGTTTCGCGAACGACGGCC+GGG | - | chr6_1:89685970-89685989 | Msa0897440:intron | 65.0% | |
| GGCCGTCGTTCGCGAAACAG+TGG | + | chr6_1:89685970-89685989 | Msa0897460:CDS | 65.0% | |
| CACCGAAGGGAGAAAGGCGG+CGG | + | chr6_1:89686028-89686047 | Msa0897460:CDS | 65.0% | |
| CAAGTACGGAGCACGCCGTG+AGG | + | chr6_1:89686310-89686329 | Msa0897460:intron | 65.0% | |
| ! | GCCGTGAGGGTGTGGCACAT+AGG | + | chr6_1:89686324-89686343 | Msa0897460:intron | 65.0% |
| AGGGAAGGAGCAGGGGTTGG+AGG | + | chr6_1:89686470-89686489 | Msa0897460:CDS | 65.0% | |
| CGCCGCCGCCTTTCTCCCTT+CGG | - | chr6_1:89686033-89686052 | Msa0897440:intron | 70.0% | |
| CGAAGGGAGAAAGGCGGCGG+CGG | + | chr6_1:89686031-89686050 | Msa0897460:CDS | 70.0% | |
| CGCCGCCGCCTTTCTCCCTT+CGG | - | chr6_1:89686033-89686052 | Msa0897440:intron | 70.0% | |
| CGAAGGGAGAAAGGCGGCGG+CGG | + | chr6_1:89686031-89686050 | Msa0897460:CDS | 70.0% | |
| CGGAGCACGCCGTGAGGGTG+TGG | + | chr6_1:89686316-89686335 | Msa0897460:intron | 75.0% | |
| CGGAGCACGCCGTGAGGGTG+TGG | + | chr6_1:89686316-89686335 | Msa0897460:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 89685213 | 89686929 | 89685213 | ID=Msa0897460;Name=Msa0897460 |
| chr6_1 | mRNA | 89685213 | 89686929 | 89685213 | ID=Msa0897460-mRNA-1;Parent=Msa0897460;Name=Msa0897460-mRNA-1;_AED=0.57;_eAED=0.91;_QI=0|0|0|0.6|1|1|5|0|222 |
| chr6_1 | exon | 89685213 | 89685269 | 89685213 | ID=Msa0897460-mRNA-1:exon:15146;Parent=Msa0897460-mRNA-1 |
| chr6_1 | exon | 89685929 | 89686102 | 89685929 | ID=Msa0897460-mRNA-1:exon:15147;Parent=Msa0897460-mRNA-1 |
| chr6_1 | exon | 89686268 | 89686312 | 89686268 | ID=Msa0897460-mRNA-1:exon:15148;Parent=Msa0897460-mRNA-1 |
| chr6_1 | exon | 89686413 | 89686502 | 89686413 | ID=Msa0897460-mRNA-1:exon:15149;Parent=Msa0897460-mRNA-1 |
| chr6_1 | exon | 89686627 | 89686929 | 89686627 | ID=Msa0897460-mRNA-1:exon:15150;Parent=Msa0897460-mRNA-1 |
| chr6_1 | CDS | 89685213 | 89685269 | 89685213 | ID=Msa0897460-mRNA-1:cds;Parent=Msa0897460-mRNA-1 |
| chr6_1 | CDS | 89685929 | 89686102 | 89685929 | ID=Msa0897460-mRNA-1:cds;Parent=Msa0897460-mRNA-1 |
| chr6_1 | CDS | 89686268 | 89686312 | 89686268 | ID=Msa0897460-mRNA-1:cds;Parent=Msa0897460-mRNA-1 |
| chr6_1 | CDS | 89686413 | 89686502 | 89686413 | ID=Msa0897460-mRNA-1:cds;Parent=Msa0897460-mRNA-1 |
| chr6_1 | CDS | 89686627 | 89686929 | 89686627 | ID=Msa0897460-mRNA-1:cds;Parent=Msa0897460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
