Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0924060 | MCH79723.1 | 72.441 | 127 | 29 | 3 | 128 | 248 | 570 | 696 | 4.44e-47 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0924060 | sp|Q99315|YG31B_YEAST | 37.762 | 143 | 76 | 4 | 119 | 248 | 572 | 714 | 1.75e-17 | 85.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0748970 | Msa0924060 | 0.825166 | 5.436539e-54 | -8.615850e-47 |
| Msa0768290 | Msa0924060 | 0.814116 | 1.814880e-51 | -8.615850e-47 |
| Msa0768370 | Msa0924060 | 0.820575 | 6.380411e-53 | -8.615850e-47 |
| Msa0787120 | Msa0924060 | 0.809782 | 1.596051e-50 | -8.615850e-47 |
| Msa0434000 | Msa0924060 | 0.809095 | 2.240777e-50 | -8.615850e-47 |
| Msa0342750 | Msa0924060 | 0.809643 | 1.710178e-50 | -8.615850e-47 |
| Msa0897440 | Msa0924060 | 0.807809 | 4.216947e-50 | -8.615850e-47 |
| Msa0897460 | Msa0924060 | 0.898345 | 5.809205e-77 | -8.615850e-47 |
| Msa0899430 | Msa0924060 | 0.805292 | 1.432555e-49 | -8.615850e-47 |
| Msa0899450 | Msa0924060 | 0.805043 | 1.614898e-49 | -8.615850e-47 |
| Msa0901070 | Msa0924060 | 0.809378 | 1.948658e-50 | -8.615850e-47 |
| Msa0916690 | Msa0924060 | 0.806263 | 8.953296e-50 | -8.615850e-47 |
| Msa0924050 | Msa0924060 | 0.807868 | 4.095499e-50 | -8.615850e-47 |
| Msa0924060 | Msa0967280 | 0.857327 | 1.760246e-62 | -8.615850e-47 |
| Msa0924060 | Msa0997500 | 0.839172 | 1.857427e-57 | -8.615850e-47 |
| Msa0924060 | Msa0997520 | 0.959638 | 1.158652e-117 | -8.615850e-47 |
| Msa0924060 | Msa1248300 | 0.852849 | 3.524386e-61 | -8.615850e-47 |
| Msa0924060 | Msa1248310 | 0.835142 | 1.992572e-56 | -8.615850e-47 |
| Msa0924060 | Msa1248370 | 0.827480 | 1.528273e-54 | -8.615850e-47 |
| Msa0924060 | Msa1289420 | 0.813640 | 2.310402e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0924060 | MtrunA17_Chr4g0041691 | 49.315 | 146 | 68 | 3 | 109 | 248 | 594 | 739 | 1.59e-35 | 134 |
| Msa0924060 | MtrunA17_Chr6g0472401 | 44.444 | 144 | 74 | 3 | 111 | 248 | 93 | 236 | 1.29e-31 | 122 |
| Msa0924060 | MtrunA17_Chr2g0306511 | 37.589 | 141 | 82 | 3 | 114 | 248 | 503 | 643 | 2.48e-23 | 98.6 |
| Msa0924060 | MtrunA17_Chr1g0170491 | 36.879 | 141 | 83 | 3 | 114 | 248 | 503 | 643 | 2.75e-22 | 95.5 |
| Msa0924060 | MtrunA17_Chr1g0175041 | 36.170 | 141 | 84 | 3 | 114 | 248 | 518 | 658 | 1.27e-21 | 93.6 |
| Msa0924060 | MtrunA17_Chr8g0367821 | 36.170 | 141 | 84 | 3 | 114 | 248 | 128 | 268 | 1.34e-21 | 92.8 |
| Msa0924060 | MtrunA17_Chr6g0478941 | 36.879 | 141 | 83 | 3 | 114 | 248 | 128 | 268 | 1.49e-21 | 93.6 |
| Msa0924060 | MtrunA17_Chr0c01g0489031 | 36.170 | 141 | 84 | 3 | 114 | 248 | 503 | 643 | 1.84e-21 | 93.2 |
| Msa0924060 | MtrunA17_Chr4g0019441 | 36.170 | 141 | 84 | 3 | 114 | 248 | 479 | 619 | 2.23e-21 | 93.2 |
| Msa0924060 | MtrunA17_Chr8g0363431 | 36.170 | 141 | 84 | 3 | 114 | 248 | 545 | 685 | 2.38e-21 | 92.8 |
| Msa0924060 | MtrunA17_Chr4g0044301 | 36.170 | 141 | 84 | 3 | 114 | 248 | 503 | 643 | 2.72e-21 | 92.8 |
| Msa0924060 | MtrunA17_Chr6g0475571 | 36.170 | 141 | 84 | 3 | 114 | 248 | 142 | 282 | 2.81e-21 | 92.4 |
| Msa0924060 | MtrunA17_Chr3g0105561 | 36.170 | 141 | 84 | 3 | 114 | 248 | 94 | 234 | 4.52e-21 | 92.0 |
| Msa0924060 | MtrunA17_Chr3g0096731 | 36.170 | 141 | 84 | 3 | 114 | 248 | 264 | 404 | 5.16e-21 | 91.7 |
| Msa0924060 | MtrunA17_Chr2g0306251 | 36.170 | 141 | 84 | 3 | 114 | 248 | 362 | 502 | 8.63e-21 | 91.3 |
| Msa0924060 | MtrunA17_Chr6g0452431 | 35.714 | 140 | 84 | 3 | 115 | 248 | 426 | 565 | 1.12e-20 | 90.9 |
| Msa0924060 | MtrunA17_Chr2g0306051 | 35.915 | 142 | 84 | 3 | 114 | 248 | 470 | 611 | 1.13e-20 | 90.9 |
| Msa0924060 | MtrunA17_Chr4g0053141 | 35.461 | 141 | 85 | 3 | 114 | 248 | 503 | 643 | 1.16e-20 | 90.9 |
| Msa0924060 | MtrunA17_Chr2g0306271 | 35.461 | 141 | 85 | 3 | 114 | 248 | 503 | 643 | 1.37e-20 | 90.5 |
| Msa0924060 | MtrunA17_Chr3g0096001 | 41.007 | 139 | 76 | 3 | 116 | 248 | 450 | 588 | 3.21e-20 | 89.7 |
| Msa0924060 | MtrunA17_Chr2g0306241 | 33.784 | 148 | 91 | 4 | 108 | 248 | 10 | 157 | 6.48e-20 | 88.6 |
| Msa0924060 | MtrunA17_Chr1g0170501 | 34.286 | 140 | 86 | 3 | 115 | 248 | 320 | 459 | 6.84e-20 | 88.6 |
| Msa0924060 | MtrunA17_Chr4g0018081 | 36.090 | 133 | 79 | 3 | 122 | 248 | 409 | 541 | 3.06e-19 | 86.7 |
| Msa0924060 | MtrunA17_Chr7g0231051 | 34.752 | 141 | 86 | 3 | 114 | 248 | 531 | 671 | 3.93e-19 | 86.3 |
| Msa0924060 | MtrunA17_Chr1g0172201 | 34.752 | 141 | 86 | 3 | 114 | 248 | 42 | 182 | 3.11e-18 | 83.6 |
| Msa0924060 | MtrunA17_Chr3g0084281 | 40.876 | 137 | 75 | 3 | 118 | 248 | 559 | 695 | 5.88e-18 | 82.8 |
| Msa0924060 | MtrunA17_Chr8g0358641 | 30.508 | 118 | 77 | 2 | 114 | 226 | 502 | 619 | 3.77e-13 | 68.6 |
| Msa0924060 | MtrunA17_Chr7g0226861 | 40.000 | 105 | 58 | 2 | 118 | 217 | 559 | 663 | 3.34e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 75 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCGTGCTCCGTACTTGTTC+TGG | 0.204772 | 6_2:-65491699 | Msa0924050:intron |
| TTAAAATTGGATTTGAAATC+AGG | 0.252831 | 6_2:+65492328 | Msa0924060:CDS |
| AACTCATCAATCACTGGAAT+TGG | 0.336395 | 6_2:-65492286 | Msa0924050:intron |
| AGTGGCATGGCCGTCGTTCT+TGG | 0.355616 | 6_2:+65491383 | Msa0924060:CDS |
| GCTACAGACATGTTAATATC+AGG | 0.358635 | 6_2:+65492142 | Msa0924060:CDS |
| ATGGCCGTCGTTCTTGGTTA+AGG | 0.382787 | 6_2:+65491389 | Msa0924060:CDS |
| TATCTGTAGGGTCGGATGTT+GGG | 0.387075 | 6_2:-65492085 | Msa0924050:intron |
| GGAGAGTATGCTGATCTGTT+TGG | 0.390541 | 6_2:+65491821 | Msa0924060:CDS |
| AGGGAAGGAGTAGGGGTTGG+AGG | 0.396211 | 6_2:+65491866 | Msa0924060:CDS |
| CGCCGCCGCCTTTCTCCCTT+CGG | 0.399756 | 6_2:-65491425 | Msa0924050:intron |
| GGCGAGAACTTCGCCGGAAA+AGG | 0.404460 | 6_2:+65491336 | Msa0924060:CDS |
| GCGTGCTCCGTACTTGTTCT+GGG | 0.407425 | 6_2:-65491698 | Msa0924050:intron |
| ACTGTTTCGCGAACGACGGC+CGG | 0.407676 | 6_2:-65491363 | Msa0924050:intron |
| TCTCTACAGGAACTCGATCC+TGG | 0.424052 | 6_2:+65491654 | Msa0924060:intron |
| TATACACACCTGAGGTGAAA+AGG | 0.440121 | 6_2:+65491846 | Msa0924060:CDS |
| CTGACTGTGCGGGTATCTGT+AGG | 0.443547 | 6_2:-65492098 | Msa0924050:intron |
| GTATCTGTAGGGTCGGATGT+TGG | 0.445151 | 6_2:-65492086 | Msa0924050:intron |
| CGAAGGGAGAAAGGCGGCGG+CGG | 0.449428 | 6_2:+65491426 | Msa0924060:CDS |
| TTCCATTCTCAGCTTTGAAA+CGG | 0.455070 | 6_2:-65491449 | Msa0924050:intron |
| GAGAATGGAAGAATGAAGAG+AGG | 0.475940 | 6_2:+65491462 | Msa0924060:CDS |
| AGGTGAAAAGGGAAGGAGTA+GGG | 0.486203 | 6_2:+65491858 | Msa0924060:CDS |
| TGTTAATATCAGGACTCATC+AGG | 0.494575 | 6_2:+65492152 | Msa0924060:CDS |
| TCAAAACACCGAAGGGAGAA+AGG | 0.495459 | 6_2:+65491417 | Msa0924060:CDS |
| AATGTTGAAGCCCTTACAAA+AGG | 0.499404 | 6_2:+65491210 | None:intergenic |
| TAAAATTGGATTTGAAATCA+GGG | 0.502270 | 6_2:+65492329 | Msa0924060:CDS |
| AAAAGGGAAGGAGTAGGGGT+TGG | 0.505918 | 6_2:+65491863 | Msa0924060:CDS |
| TTGCTTCCTTCTGACTGTGC+GGG | 0.506216 | 6_2:-65492108 | Msa0924050:intron |
| GGCCGTTTCAAAGCTGAGAA+TGG | 0.509090 | 6_2:+65491447 | Msa0924060:CDS |
| CACCGAAGGGAGAAAGGCGG+CGG | 0.509135 | 6_2:+65491423 | Msa0924060:CDS |
| CCCCACAACTCATCAATCAC+TGG | 0.517138 | 6_2:-65492292 | Msa0924050:intron |
| TGATCATGCTATTGAAATCA+AGG | 0.517444 | 6_2:+65492048 | Msa0924060:CDS |
| TCCAGTGATTGATGAGTTGT+GGG | 0.523941 | 6_2:+65492291 | Msa0924060:CDS |
| ATACACACCTGAGGTGAAAA+GGG | 0.525243 | 6_2:+65491847 | Msa0924060:CDS |
| GCGAGAACTTCGCCGGAAAA+GGG | 0.525329 | 6_2:+65491337 | Msa0924060:CDS |
| CTGTTTCGCGAACGACGGCC+GGG | 0.528326 | 6_2:-65491362 | Msa0924050:intron |
| ACTGAATATTTAACTCATGA+AGG | 0.530281 | 6_2:+65492388 | Msa0924060:CDS |
| GGTGAAAAGGGAAGGAGTAG+GGG | 0.535770 | 6_2:+65491859 | Msa0924060:CDS |
| AGAAAAGACATGGCAGTTGG+TGG | 0.537906 | 6_2:+65492215 | Msa0924060:CDS |
| TTCCAGTGATTGATGAGTTG+TGG | 0.548790 | 6_2:+65492290 | Msa0924060:CDS |
| GAGGTGAAAAGGGAAGGAGT+AGG | 0.549365 | 6_2:+65491857 | Msa0924060:CDS |
| TGCCACTGTTTCGCGAACGA+CGG | 0.553748 | 6_2:-65491367 | Msa0924050:intron |
| TGACTGTGCGGGTATCTGTA+GGG | 0.557781 | 6_2:-65492097 | Msa0924050:intron |
| TGCTATTGAAATCAAGGAGG+CGG | 0.558188 | 6_2:+65492054 | Msa0924060:CDS |
| ATTTCAATAGCATGATCATA+CGG | 0.561310 | 6_2:-65492043 | Msa0924050:intron |
| CTTCGCCGGAAAAGGGAACC+CGG | 0.564159 | 6_2:+65491344 | Msa0924060:CDS |
| GCATCAGATTCAAACGAAAG+AGG | 0.564841 | 6_2:+65492351 | Msa0924060:CDS |
| TGGTATTCAGAGCTCAACCT+GGG | 0.576116 | 6_2:+65491799 | Msa0924060:intron |
| GGCCGTCGTTCGCGAAACAG+TGG | 0.579434 | 6_2:+65491365 | Msa0924060:CDS |
| CATCAGATTCAAACGAAAGA+GGG | 0.582992 | 6_2:+65492352 | Msa0924060:CDS |
| TTGGTATTCAGAGCTCAACC+TGG | 0.583240 | 6_2:+65491798 | Msa0924060:intron |
| GGTTGTTTCAAAACACCGAA+GGG | 0.585404 | 6_2:+65491410 | Msa0924060:CDS |
| AAGAATGAAGAGAGGGAAGA+CGG | 0.588164 | 6_2:+65491470 | Msa0924060:CDS |
| TCAAGAAAAGACATGGCAGT+TGG | 0.589862 | 6_2:+65492212 | Msa0924060:CDS |
| CAGATACCCGCACAGTCAGA+AGG | 0.590365 | 6_2:+65492102 | Msa0924060:CDS |
| AGAATGGAAGAATGAAGAGA+GGG | 0.594765 | 6_2:+65491463 | Msa0924060:CDS |
| CAGATCAGCATACTCTCCCC+AGG | 0.595759 | 6_2:-65491816 | Msa0924050:intron |
| AACGACGGCGAGAACTTCGC+CGG | 0.596391 | 6_2:+65491330 | Msa0924060:CDS |
| AGGTTGTTTCAAAACACCGA+AGG | 0.602657 | 6_2:+65491409 | Msa0924060:CDS |
| TCGTTCGCGAAACAGTGGCA+TGG | 0.606573 | 6_2:+65491370 | Msa0924060:CDS |
| ATTGCTTCCTTCTGACTGTG+CGG | 0.607991 | 6_2:-65492109 | Msa0924050:intron |
| TGTGCGGGTATCTGTAGGGT+CGG | 0.615253 | 6_2:-65492093 | Msa0924050:intron |
| ACACCTGAGGTGAAAAGGGA+AGG | 0.620205 | 6_2:+65491851 | Msa0924060:CDS |
| ATTCATGTCAAGAAAAGACA+TGG | 0.630694 | 6_2:+65492205 | Msa0924060:CDS |
| GATTGATGAGTTGTGGGGAG+CGG | 0.637510 | 6_2:+65492297 | Msa0924060:CDS |
| GTTTGGTTTATACACACCTG+AGG | 0.640201 | 6_2:+65491838 | Msa0924060:CDS |
| CTAGCATATCGACTTACAGT+GGG | 0.640420 | 6_2:-65492175 | Msa0924050:intron |
| GACCCTACAGATATTTCGAG+AGG | 0.680595 | 6_2:+65491997 | Msa0924060:intron |
| GCTAGCATATCGACTTACAG+TGG | 0.683609 | 6_2:-65492176 | Msa0924050:intron |
| AATGAAGAGAGGGAAGACGG+CGG | 0.691651 | 6_2:+65491473 | Msa0924060:CDS |
| GGTATTCAGAGCTCAACCTG+GGG | 0.697483 | 6_2:+65491800 | Msa0924060:intron |
| ACAACCTTAACCAAGAACGA+CGG | 0.723680 | 6_2:-65491393 | Msa0924050:intron |
| AAACACCGAAGGGAGAAAGG+CGG | 0.746676 | 6_2:+65491420 | Msa0924060:CDS |
| CCAGTGATTGATGAGTTGTG+GGG | 0.752783 | 6_2:+65492292 | Msa0924060:CDS |
| TGAGGGAAGAGAGTGAACGA+CGG | 0.756419 | 6_2:+65491315 | Msa0924060:intron |
| TCATGCTATTGAAATCAAGG+AGG | 0.771023 | 6_2:+65492051 | Msa0924060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATCGAAAAAAATAGTT+AGG | + | chr6_2:65491260-65491279 | Msa0924060:intron | 15.0% |
| !! | AAAATCGAAAAAAATAGTTA+GGG | + | chr6_2:65491261-65491280 | Msa0924060:intron | 15.0% |
| !! | AAAAATCGAAAAAAATAGTT+AGG | + | chr6_2:65491260-65491279 | Msa0924060:intron | 15.0% |
| !! | AAAATCGAAAAAAATAGTTA+GGG | + | chr6_2:65491261-65491280 | Msa0924060:intron | 15.0% |
| !!! | TTTTCTTGACATGAATTAAA+AGG | - | chr6_2:65492201-65492220 | Msa0924050:intron | 20.0% |
| !!! | AGCGGTAAAATTTTTAAAAT+TGG | + | chr6_2:65492315-65492334 | Msa0924060:CDS | 20.0% |
| !!! | TTAAAATTGGATTTGAAATC+AGG | + | chr6_2:65492328-65492347 | Msa0924060:CDS | 20.0% |
| !!! | TAAAATTGGATTTGAAATCA+GGG | + | chr6_2:65492329-65492348 | Msa0924060:CDS | 20.0% |
| !!! | TTTTCTTGACATGAATTAAA+AGG | - | chr6_2:65492201-65492220 | Msa0924050:intron | 20.0% |
| !!! | AGCGGTAAAATTTTTAAAAT+TGG | + | chr6_2:65492315-65492334 | Msa0924060:CDS | 20.0% |
| !!! | TTAAAATTGGATTTGAAATC+AGG | + | chr6_2:65492328-65492347 | Msa0924060:CDS | 20.0% |
| !!! | TAAAATTGGATTTGAAATCA+GGG | + | chr6_2:65492329-65492348 | Msa0924060:CDS | 20.0% |
| ! | GAAAAAAATAGTTAGGGTTA+TGG | + | chr6_2:65491267-65491286 | Msa0924060:intron | 25.0% |
| ! | ACCATGTCATAACTATATAT+AGG | + | chr6_2:65491548-65491567 | Msa0924060:intron | 25.0% |
| ! | CCATGTCATAACTATATATA+GGG | + | chr6_2:65491549-65491568 | Msa0924060:intron | 25.0% |
| ! | ATTTCAATAGCATGATCATA+CGG | - | chr6_2:65492046-65492065 | Msa0924050:intron | 25.0% |
| ! | ACTGAATATTTAACTCATGA+AGG | + | chr6_2:65492388-65492407 | Msa0924060:CDS | 25.0% |
| ! | GAAAAAAATAGTTAGGGTTA+TGG | + | chr6_2:65491267-65491286 | Msa0924060:intron | 25.0% |
| ! | ACCATGTCATAACTATATAT+AGG | + | chr6_2:65491548-65491567 | Msa0924060:intron | 25.0% |
| ! | CCATGTCATAACTATATATA+GGG | + | chr6_2:65491549-65491568 | Msa0924060:intron | 25.0% |
| ! | ATTTCAATAGCATGATCATA+CGG | - | chr6_2:65492046-65492065 | Msa0924050:intron | 25.0% |
| ! | ACTGAATATTTAACTCATGA+AGG | + | chr6_2:65492388-65492407 | Msa0924060:CDS | 25.0% |
| ! | TTTCACACAACCTTTTGTAA+GGG | - | chr6_2:65491223-65491242 | Msa0924050:intron | 30.0% |
| ! | TTTTCACACAACCTTTTGTA+AGG | - | chr6_2:65491224-65491243 | Msa0924050:intron | 30.0% |
| TTGTGTGAAAAACAGAGTTA+AGG | + | chr6_2:65491233-65491252 | Msa0924060:intron | 30.0% | |
| TGTGTGAAAAACAGAGTTAA+GGG | + | chr6_2:65491234-65491253 | Msa0924060:intron | 30.0% | |
| AAAAATAGTTAGGGTTATGG+AGG | + | chr6_2:65491270-65491289 | Msa0924060:intron | 30.0% | |
| TATGGAGGAGAAAACAAAAA+CGG | + | chr6_2:65491285-65491304 | Msa0924060:intron | 30.0% | |
| CCCTATATATAGTTATGACA+TGG | - | chr6_2:65491552-65491571 | Msa0924050:intron | 30.0% | |
| ! | TGAAATTGGGTTTTACGAAT+CGG | - | chr6_2:65491601-65491620 | Msa0924050:intron | 30.0% |
| AACGTAATGATAAACGAGTT+CGG | - | chr6_2:65491634-65491653 | Msa0924050:intron | 30.0% | |
| TTATCATTACGTTTCTCTAC+AGG | + | chr6_2:65491641-65491660 | Msa0924060:intron | 30.0% | |
| ACCTTGATGTGTCAATTATT+TGG | + | chr6_2:65491779-65491798 | Msa0924060:intron | 30.0% | |
| ACCAAATAATTGACACATCA+AGG | - | chr6_2:65491783-65491802 | Msa0924050:intron | 30.0% | |
| ATTTCAATAGCATGATCGTA+CGG | - | chr6_2:65491948-65491967 | Msa0924050:intron | 30.0% | |
| TGATCATGCTATTGAAATCA+AGG | + | chr6_2:65492048-65492067 | Msa0924060:CDS | 30.0% | |
| ATTCATGTCAAGAAAAGACA+TGG | + | chr6_2:65492205-65492224 | Msa0924060:CDS | 30.0% | |
| !!! | GTGGTTTTGTACTGATTATA+GGG | + | chr6_2:65492234-65492253 | Msa0924060:CDS | 30.0% |
| ! | TTTCACACAACCTTTTGTAA+GGG | - | chr6_2:65491223-65491242 | Msa0924050:intron | 30.0% |
| ! | TTTTCACACAACCTTTTGTA+AGG | - | chr6_2:65491224-65491243 | Msa0924050:intron | 30.0% |
| TTGTGTGAAAAACAGAGTTA+AGG | + | chr6_2:65491233-65491252 | Msa0924060:intron | 30.0% | |
| TGTGTGAAAAACAGAGTTAA+GGG | + | chr6_2:65491234-65491253 | Msa0924060:intron | 30.0% | |
| AAAAATAGTTAGGGTTATGG+AGG | + | chr6_2:65491270-65491289 | Msa0924060:intron | 30.0% | |
| TATGGAGGAGAAAACAAAAA+CGG | + | chr6_2:65491285-65491304 | Msa0924060:intron | 30.0% | |
| CCCTATATATAGTTATGACA+TGG | - | chr6_2:65491552-65491571 | Msa0924050:intron | 30.0% | |
| ! | TGAAATTGGGTTTTACGAAT+CGG | - | chr6_2:65491601-65491620 | Msa0924050:intron | 30.0% |
| AACGTAATGATAAACGAGTT+CGG | - | chr6_2:65491634-65491653 | Msa0924050:intron | 30.0% | |
| TTATCATTACGTTTCTCTAC+AGG | + | chr6_2:65491641-65491660 | Msa0924060:intron | 30.0% | |
| ACCTTGATGTGTCAATTATT+TGG | + | chr6_2:65491779-65491798 | Msa0924060:intron | 30.0% | |
| ACCAAATAATTGACACATCA+AGG | - | chr6_2:65491783-65491802 | Msa0924050:intron | 30.0% | |
| ATTTCAATAGCATGATCGTA+CGG | - | chr6_2:65491948-65491967 | Msa0924050:intron | 30.0% | |
| TGATCATGCTATTGAAATCA+AGG | + | chr6_2:65492048-65492067 | Msa0924060:CDS | 30.0% | |
| ATTCATGTCAAGAAAAGACA+TGG | + | chr6_2:65492205-65492224 | Msa0924060:CDS | 30.0% | |
| !!! | GTGGTTTTGTACTGATTATA+GGG | + | chr6_2:65492234-65492253 | Msa0924060:CDS | 30.0% |
| ATGGAGGAGAAAACAAAAAC+GGG | + | chr6_2:65491286-65491305 | Msa0924060:intron | 35.0% | |
| ! | GAGAAAACAAAAACGGGTTT+AGG | + | chr6_2:65491292-65491311 | Msa0924060:intron | 35.0% |
| !! | TTCCATTCTCAGCTTTGAAA+CGG | - | chr6_2:65491452-65491471 | Msa0924050:intron | 35.0% |
| AGAATGGAAGAATGAAGAGA+GGG | + | chr6_2:65491463-65491482 | Msa0924060:CDS | 35.0% | |
| !!! | TGGTTAGGTTTTTTTCGTGA+AGG | + | chr6_2:65491503-65491522 | Msa0924060:intron | 35.0% |
| !! | AGGGAACCGTGTTTTTAAAT+TGG | + | chr6_2:65491568-65491587 | Msa0924060:intron | 35.0% |
| TCGGGTCCAATTTAAAAACA+CGG | - | chr6_2:65491577-65491596 | Msa0924050:intron | 35.0% | |
| ! | GAAATTGGGTTTTACGAATC+GGG | - | chr6_2:65491600-65491619 | Msa0924050:intron | 35.0% |
| CGGCTGACAAAATTGAAATT+GGG | - | chr6_2:65491614-65491633 | Msa0924050:intron | 35.0% | |
| TCGGCTGACAAAATTGAAAT+TGG | - | chr6_2:65491615-65491634 | Msa0924050:intron | 35.0% | |
| CGATCATGCTATTGAAATCA+AGG | + | chr6_2:65491950-65491969 | Msa0924060:intron | 35.0% | |
| TCATGCTATTGAAATCAAGG+AGG | + | chr6_2:65491953-65491972 | Msa0924060:intron | 35.0% | |
| TACCTCTCGAAATATCTGTA+GGG | - | chr6_2:65492002-65492021 | Msa0924050:intron | 35.0% | |
| ATACCTCTCGAAATATCTGT+AGG | - | chr6_2:65492003-65492022 | Msa0924050:intron | 35.0% | |
| TCATGCTATTGAAATCAAGG+AGG | + | chr6_2:65491953-65491972 | Msa0924060:intron | 35.0% | |
| GCTACAGACATGTTAATATC+AGG | + | chr6_2:65492142-65492161 | Msa0924060:CDS | 35.0% | |
| TGTTAATATCAGGACTCATC+AGG | + | chr6_2:65492152-65492171 | Msa0924060:CDS | 35.0% | |
| !!! | GGTGGTTTTGTACTGATTAT+AGG | + | chr6_2:65492233-65492252 | Msa0924060:CDS | 35.0% |
| AACTCATCAATCACTGGAAT+TGG | - | chr6_2:65492289-65492308 | Msa0924050:intron | 35.0% | |
| CATCAGATTCAAACGAAAGA+GGG | + | chr6_2:65492352-65492371 | Msa0924060:CDS | 35.0% | |
| ATGGAGGAGAAAACAAAAAC+GGG | + | chr6_2:65491286-65491305 | Msa0924060:intron | 35.0% | |
| ! | GAGAAAACAAAAACGGGTTT+AGG | + | chr6_2:65491292-65491311 | Msa0924060:intron | 35.0% |
| !! | TTCCATTCTCAGCTTTGAAA+CGG | - | chr6_2:65491452-65491471 | Msa0924050:intron | 35.0% |
| AGAATGGAAGAATGAAGAGA+GGG | + | chr6_2:65491463-65491482 | Msa0924060:CDS | 35.0% | |
| !!! | TGGTTAGGTTTTTTTCGTGA+AGG | + | chr6_2:65491503-65491522 | Msa0924060:intron | 35.0% |
| !! | AGGGAACCGTGTTTTTAAAT+TGG | + | chr6_2:65491568-65491587 | Msa0924060:intron | 35.0% |
| TCGGGTCCAATTTAAAAACA+CGG | - | chr6_2:65491577-65491596 | Msa0924050:intron | 35.0% | |
| ! | GAAATTGGGTTTTACGAATC+GGG | - | chr6_2:65491600-65491619 | Msa0924050:intron | 35.0% |
| CGGCTGACAAAATTGAAATT+GGG | - | chr6_2:65491614-65491633 | Msa0924050:intron | 35.0% | |
| TCGGCTGACAAAATTGAAAT+TGG | - | chr6_2:65491615-65491634 | Msa0924050:intron | 35.0% | |
| CGATCATGCTATTGAAATCA+AGG | + | chr6_2:65491950-65491969 | Msa0924060:intron | 35.0% | |
| TCATGCTATTGAAATCAAGG+AGG | + | chr6_2:65491953-65491972 | Msa0924060:intron | 35.0% | |
| TACCTCTCGAAATATCTGTA+GGG | - | chr6_2:65492002-65492021 | Msa0924050:intron | 35.0% | |
| ATACCTCTCGAAATATCTGT+AGG | - | chr6_2:65492003-65492022 | Msa0924050:intron | 35.0% | |
| TCATGCTATTGAAATCAAGG+AGG | + | chr6_2:65491953-65491972 | Msa0924060:intron | 35.0% | |
| GCTACAGACATGTTAATATC+AGG | + | chr6_2:65492142-65492161 | Msa0924060:CDS | 35.0% | |
| TGTTAATATCAGGACTCATC+AGG | + | chr6_2:65492152-65492171 | Msa0924060:CDS | 35.0% | |
| !!! | GGTGGTTTTGTACTGATTAT+AGG | + | chr6_2:65492233-65492252 | Msa0924060:CDS | 35.0% |
| AACTCATCAATCACTGGAAT+TGG | - | chr6_2:65492289-65492308 | Msa0924050:intron | 35.0% | |
| CATCAGATTCAAACGAAAGA+GGG | + | chr6_2:65492352-65492371 | Msa0924060:CDS | 35.0% | |
| GTGAAAAACAGAGTTAAGGG+AGG | + | chr6_2:65491237-65491256 | Msa0924060:intron | 40.0% | |
| ! | AACAAAAACGGGTTTAGGTG+AGG | + | chr6_2:65491297-65491316 | Msa0924060:intron | 40.0% |
| ! | ACAAAAACGGGTTTAGGTGA+GGG | + | chr6_2:65491298-65491317 | Msa0924060:intron | 40.0% |
| ACAACCTTAACCAAGAACGA+CGG | - | chr6_2:65491396-65491415 | Msa0924050:intron | 40.0% | |
| ! | AGGTTGTTTCAAAACACCGA+AGG | + | chr6_2:65491409-65491428 | Msa0924060:CDS | 40.0% |
| ! | GGTTGTTTCAAAACACCGAA+GGG | + | chr6_2:65491410-65491429 | Msa0924060:CDS | 40.0% |
| GAGAATGGAAGAATGAAGAG+AGG | + | chr6_2:65491462-65491481 | Msa0924060:CDS | 40.0% | |
| AAGAATGAAGAGAGGGAAGA+CGG | + | chr6_2:65491470-65491489 | Msa0924060:CDS | 40.0% | |
| ! | ATTTTGTGTGTTTTGTGGCC+AGG | - | chr6_2:65491675-65491694 | Msa0924050:intron | 40.0% |
| !! | GGTCGATTTTGTGTGTTTTG+TGG | - | chr6_2:65491680-65491699 | Msa0924050:intron | 40.0% |
| AAATCGACCCAGAACAAGTA+CGG | + | chr6_2:65491691-65491710 | Msa0924060:intron | 40.0% | |
| AAAAATGAGTGCCAGGTCAT+AGG | - | chr6_2:65491755-65491774 | Msa0924050:intron | 40.0% | |
| GGTAGTAAAAAATGAGTGCC+AGG | - | chr6_2:65491762-65491781 | Msa0924050:intron | 40.0% | |
| ! | GTTTGGTTTATACACACCTG+AGG | + | chr6_2:65491838-65491857 | Msa0924060:CDS | 40.0% |
| TATACACACCTGAGGTGAAA+AGG | + | chr6_2:65491846-65491865 | Msa0924060:CDS | 40.0% | |
| ATACACACCTGAGGTGAAAA+GGG | + | chr6_2:65491847-65491866 | Msa0924060:CDS | 40.0% | |
| GTATGTTGATCTGTTTCGAG+AGG | + | chr6_2:65491899-65491918 | Msa0924060:intron | 40.0% | |
| TGCTATTGAAATCAAGGAGG+CGG | + | chr6_2:65491956-65491975 | Msa0924060:intron | 40.0% | |
| TCTCGAAATATCTGTAGGGT+CGG | - | chr6_2:65491998-65492017 | Msa0924050:intron | 40.0% | |
| TGCTATTGAAATCAAGGAGG+CGG | + | chr6_2:65491956-65491975 | Msa0924060:intron | 40.0% | |
| !! | CTAGCATATCGACTTACAGT+GGG | - | chr6_2:65492178-65492197 | Msa0924050:intron | 40.0% |
| TCAAGAAAAGACATGGCAGT+TGG | + | chr6_2:65492212-65492231 | Msa0924060:CDS | 40.0% | |
| TTCCAGTGATTGATGAGTTG+TGG | + | chr6_2:65492290-65492309 | Msa0924060:CDS | 40.0% | |
| TCCAGTGATTGATGAGTTGT+GGG | + | chr6_2:65492291-65492310 | Msa0924060:CDS | 40.0% | |
| GCATCAGATTCAAACGAAAG+AGG | + | chr6_2:65492351-65492370 | Msa0924060:CDS | 40.0% | |
| GTGAAAAACAGAGTTAAGGG+AGG | + | chr6_2:65491237-65491256 | Msa0924060:intron | 40.0% | |
| ! | AACAAAAACGGGTTTAGGTG+AGG | + | chr6_2:65491297-65491316 | Msa0924060:intron | 40.0% |
| ! | ACAAAAACGGGTTTAGGTGA+GGG | + | chr6_2:65491298-65491317 | Msa0924060:intron | 40.0% |
| ACAACCTTAACCAAGAACGA+CGG | - | chr6_2:65491396-65491415 | Msa0924050:intron | 40.0% | |
| ! | AGGTTGTTTCAAAACACCGA+AGG | + | chr6_2:65491409-65491428 | Msa0924060:CDS | 40.0% |
| ! | GGTTGTTTCAAAACACCGAA+GGG | + | chr6_2:65491410-65491429 | Msa0924060:CDS | 40.0% |
| GAGAATGGAAGAATGAAGAG+AGG | + | chr6_2:65491462-65491481 | Msa0924060:CDS | 40.0% | |
| AAGAATGAAGAGAGGGAAGA+CGG | + | chr6_2:65491470-65491489 | Msa0924060:CDS | 40.0% | |
| ! | ATTTTGTGTGTTTTGTGGCC+AGG | - | chr6_2:65491675-65491694 | Msa0924050:intron | 40.0% |
| !! | GGTCGATTTTGTGTGTTTTG+TGG | - | chr6_2:65491680-65491699 | Msa0924050:intron | 40.0% |
| AAATCGACCCAGAACAAGTA+CGG | + | chr6_2:65491691-65491710 | Msa0924060:intron | 40.0% | |
| AAAAATGAGTGCCAGGTCAT+AGG | - | chr6_2:65491755-65491774 | Msa0924050:intron | 40.0% | |
| GGTAGTAAAAAATGAGTGCC+AGG | - | chr6_2:65491762-65491781 | Msa0924050:intron | 40.0% | |
| ! | GTTTGGTTTATACACACCTG+AGG | + | chr6_2:65491838-65491857 | Msa0924060:CDS | 40.0% |
| TATACACACCTGAGGTGAAA+AGG | + | chr6_2:65491846-65491865 | Msa0924060:CDS | 40.0% | |
| ATACACACCTGAGGTGAAAA+GGG | + | chr6_2:65491847-65491866 | Msa0924060:CDS | 40.0% | |
| GTATGTTGATCTGTTTCGAG+AGG | + | chr6_2:65491899-65491918 | Msa0924060:intron | 40.0% | |
| TGCTATTGAAATCAAGGAGG+CGG | + | chr6_2:65491956-65491975 | Msa0924060:intron | 40.0% | |
| TCTCGAAATATCTGTAGGGT+CGG | - | chr6_2:65491998-65492017 | Msa0924050:intron | 40.0% | |
| TGCTATTGAAATCAAGGAGG+CGG | + | chr6_2:65491956-65491975 | Msa0924060:intron | 40.0% | |
| !! | CTAGCATATCGACTTACAGT+GGG | - | chr6_2:65492178-65492197 | Msa0924050:intron | 40.0% |
| TCAAGAAAAGACATGGCAGT+TGG | + | chr6_2:65492212-65492231 | Msa0924060:CDS | 40.0% | |
| TTCCAGTGATTGATGAGTTG+TGG | + | chr6_2:65492290-65492309 | Msa0924060:CDS | 40.0% | |
| TCCAGTGATTGATGAGTTGT+GGG | + | chr6_2:65492291-65492310 | Msa0924060:CDS | 40.0% | |
| GCATCAGATTCAAACGAAAG+AGG | + | chr6_2:65492351-65492370 | Msa0924060:CDS | 40.0% | |
| TCAAAACACCGAAGGGAGAA+AGG | + | chr6_2:65491417-65491436 | Msa0924060:CDS | 45.0% | |
| ! | TTGGGTTTTACGAATCGGGT+CGG | - | chr6_2:65491596-65491615 | Msa0924050:intron | 45.0% |
| TTGGTATTCAGAGCTCAACC+TGG | + | chr6_2:65491798-65491817 | Msa0924060:intron | 45.0% | |
| TGGTATTCAGAGCTCAACCT+GGG | + | chr6_2:65491799-65491818 | Msa0924060:intron | 45.0% | |
| ! | GGAGAGTATGCTGATCTGTT+TGG | + | chr6_2:65491821-65491840 | Msa0924060:CDS | 45.0% |
| AGGTGAAAAGGGAAGGAGTA+GGG | + | chr6_2:65491858-65491877 | Msa0924060:CDS | 45.0% | |
| TATCTGTAGGGTCGGATGTT+GGG | - | chr6_2:65491990-65492009 | Msa0924050:intron | 45.0% | |
| ATATCTGTAGGGTCGGATGT+TGG | - | chr6_2:65491991-65492010 | Msa0924050:intron | 45.0% | |
| GACCCTACAGATATTTCGAG+AGG | + | chr6_2:65491997-65492016 | Msa0924060:intron | 45.0% | |
| TATCTGTAGGGTCGGATGTT+GGG | - | chr6_2:65491990-65492009 | Msa0924050:intron | 45.0% | |
| ATTGCTTCCTTCTGACTGTG+CGG | - | chr6_2:65492112-65492131 | Msa0924050:intron | 45.0% | |
| !! | GCTAGCATATCGACTTACAG+TGG | - | chr6_2:65492179-65492198 | Msa0924050:intron | 45.0% |
| AGAAAAGACATGGCAGTTGG+TGG | + | chr6_2:65492215-65492234 | Msa0924060:CDS | 45.0% | |
| CCAGTGATTGATGAGTTGTG+GGG | + | chr6_2:65492292-65492311 | Msa0924060:CDS | 45.0% | |
| TCAAAACACCGAAGGGAGAA+AGG | + | chr6_2:65491417-65491436 | Msa0924060:CDS | 45.0% | |
| ! | TTGGGTTTTACGAATCGGGT+CGG | - | chr6_2:65491596-65491615 | Msa0924050:intron | 45.0% |
| TTGGTATTCAGAGCTCAACC+TGG | + | chr6_2:65491798-65491817 | Msa0924060:intron | 45.0% | |
| TGGTATTCAGAGCTCAACCT+GGG | + | chr6_2:65491799-65491818 | Msa0924060:intron | 45.0% | |
| ! | GGAGAGTATGCTGATCTGTT+TGG | + | chr6_2:65491821-65491840 | Msa0924060:CDS | 45.0% |
| AGGTGAAAAGGGAAGGAGTA+GGG | + | chr6_2:65491858-65491877 | Msa0924060:CDS | 45.0% | |
| TATCTGTAGGGTCGGATGTT+GGG | - | chr6_2:65491990-65492009 | Msa0924050:intron | 45.0% | |
| ATATCTGTAGGGTCGGATGT+TGG | - | chr6_2:65491991-65492010 | Msa0924050:intron | 45.0% | |
| GACCCTACAGATATTTCGAG+AGG | + | chr6_2:65491997-65492016 | Msa0924060:intron | 45.0% | |
| TATCTGTAGGGTCGGATGTT+GGG | - | chr6_2:65491990-65492009 | Msa0924050:intron | 45.0% | |
| ATTGCTTCCTTCTGACTGTG+CGG | - | chr6_2:65492112-65492131 | Msa0924050:intron | 45.0% | |
| !! | GCTAGCATATCGACTTACAG+TGG | - | chr6_2:65492179-65492198 | Msa0924050:intron | 45.0% |
| AGAAAAGACATGGCAGTTGG+TGG | + | chr6_2:65492215-65492234 | Msa0924060:CDS | 45.0% | |
| CCAGTGATTGATGAGTTGTG+GGG | + | chr6_2:65492292-65492311 | Msa0924060:CDS | 45.0% | |
| TGAGGGAAGAGAGTGAACGA+CGG | + | chr6_2:65491315-65491334 | Msa0924060:intron | 50.0% | |
| ATGGCCGTCGTTCTTGGTTA+AGG | + | chr6_2:65491389-65491408 | Msa0924060:CDS | 50.0% | |
| AAACACCGAAGGGAGAAAGG+CGG | + | chr6_2:65491420-65491439 | Msa0924060:CDS | 50.0% | |
| GGCCGTTTCAAAGCTGAGAA+TGG | + | chr6_2:65491447-65491466 | Msa0924060:CDS | 50.0% | |
| AATGAAGAGAGGGAAGACGG+CGG | + | chr6_2:65491473-65491492 | Msa0924060:CDS | 50.0% | |
| ! | TGGGTTTTACGAATCGGGTC+GGG | - | chr6_2:65491595-65491614 | Msa0924050:intron | 50.0% |
| TCTCTACAGGAACTCGATCC+TGG | + | chr6_2:65491654-65491673 | Msa0924060:intron | 50.0% | |
| TGAGTGCCAGGTCATAGGAT+CGG | - | chr6_2:65491750-65491769 | Msa0924050:intron | 50.0% | |
| GGTATTCAGAGCTCAACCTG+GGG | + | chr6_2:65491800-65491819 | Msa0924060:intron | 50.0% | |
| ACACCTGAGGTGAAAAGGGA+AGG | + | chr6_2:65491851-65491870 | Msa0924060:CDS | 50.0% | |
| ! | ACTCCTTCCCTTTTCACCTC+AGG | - | chr6_2:65491857-65491876 | Msa0924050:intron | 50.0% |
| GAGGTGAAAAGGGAAGGAGT+AGG | + | chr6_2:65491857-65491876 | Msa0924060:CDS | 50.0% | |
| GGTGAAAAGGGAAGGAGTAG+GGG | + | chr6_2:65491859-65491878 | Msa0924060:CDS | 50.0% | |
| AAAAGGGAAGGAGTAGGGGT+TGG | + | chr6_2:65491863-65491882 | Msa0924060:CDS | 50.0% | |
| GTATCTGTAGGGTCGGATGT+TGG | - | chr6_2:65492089-65492108 | Msa0924050:intron | 50.0% | |
| TGACTGTGCGGGTATCTGTA+GGG | - | chr6_2:65492100-65492119 | Msa0924050:intron | 50.0% | |
| TTGCTTCCTTCTGACTGTGC+GGG | - | chr6_2:65492111-65492130 | Msa0924050:intron | 50.0% | |
| CCCCACAACTCATCAATCAC+TGG | - | chr6_2:65492295-65492314 | Msa0924050:intron | 50.0% | |
| GATTGATGAGTTGTGGGGAG+CGG | + | chr6_2:65492297-65492316 | Msa0924060:CDS | 50.0% | |
| TGAGGGAAGAGAGTGAACGA+CGG | + | chr6_2:65491315-65491334 | Msa0924060:intron | 50.0% | |
| ATGGCCGTCGTTCTTGGTTA+AGG | + | chr6_2:65491389-65491408 | Msa0924060:CDS | 50.0% | |
| AAACACCGAAGGGAGAAAGG+CGG | + | chr6_2:65491420-65491439 | Msa0924060:CDS | 50.0% | |
| GGCCGTTTCAAAGCTGAGAA+TGG | + | chr6_2:65491447-65491466 | Msa0924060:CDS | 50.0% | |
| AATGAAGAGAGGGAAGACGG+CGG | + | chr6_2:65491473-65491492 | Msa0924060:CDS | 50.0% | |
| ! | TGGGTTTTACGAATCGGGTC+GGG | - | chr6_2:65491595-65491614 | Msa0924050:intron | 50.0% |
| TCTCTACAGGAACTCGATCC+TGG | + | chr6_2:65491654-65491673 | Msa0924060:intron | 50.0% | |
| TGAGTGCCAGGTCATAGGAT+CGG | - | chr6_2:65491750-65491769 | Msa0924050:intron | 50.0% | |
| GGTATTCAGAGCTCAACCTG+GGG | + | chr6_2:65491800-65491819 | Msa0924060:intron | 50.0% | |
| ACACCTGAGGTGAAAAGGGA+AGG | + | chr6_2:65491851-65491870 | Msa0924060:CDS | 50.0% | |
| ! | ACTCCTTCCCTTTTCACCTC+AGG | - | chr6_2:65491857-65491876 | Msa0924050:intron | 50.0% |
| GAGGTGAAAAGGGAAGGAGT+AGG | + | chr6_2:65491857-65491876 | Msa0924060:CDS | 50.0% | |
| GGTGAAAAGGGAAGGAGTAG+GGG | + | chr6_2:65491859-65491878 | Msa0924060:CDS | 50.0% | |
| AAAAGGGAAGGAGTAGGGGT+TGG | + | chr6_2:65491863-65491882 | Msa0924060:CDS | 50.0% | |
| GTATCTGTAGGGTCGGATGT+TGG | - | chr6_2:65492089-65492108 | Msa0924050:intron | 50.0% | |
| TGACTGTGCGGGTATCTGTA+GGG | - | chr6_2:65492100-65492119 | Msa0924050:intron | 50.0% | |
| TTGCTTCCTTCTGACTGTGC+GGG | - | chr6_2:65492111-65492130 | Msa0924050:intron | 50.0% | |
| CCCCACAACTCATCAATCAC+TGG | - | chr6_2:65492295-65492314 | Msa0924050:intron | 50.0% | |
| GATTGATGAGTTGTGGGGAG+CGG | + | chr6_2:65492297-65492316 | Msa0924060:CDS | 50.0% | |
| GCGAGAACTTCGCCGGAAAA+GGG | + | chr6_2:65491337-65491356 | Msa0924060:CDS | 55.0% | |
| TGCCACTGTTTCGCGAACGA+CGG | - | chr6_2:65491370-65491389 | Msa0924050:intron | 55.0% | |
| TCGTTCGCGAAACAGTGGCA+TGG | + | chr6_2:65491370-65491389 | Msa0924060:CDS | 55.0% | |
| !!! | GACGGCGGCTGTTTTTGGTT+AGG | + | chr6_2:65491488-65491507 | Msa0924060:intron | 55.0% |
| GCGTGCTCCGTACTTGTTCT+GGG | - | chr6_2:65491701-65491720 | Msa0924050:intron | 55.0% | |
| TCCTATGTGCCACACCCTCA+CGG | - | chr6_2:65491723-65491742 | Msa0924050:intron | 55.0% | |
| GATCAGCCGATCCTATGACC+TGG | + | chr6_2:65491741-65491760 | Msa0924060:intron | 55.0% | |
| CAGATCAGCATACTCTCCCC+AGG | - | chr6_2:65491819-65491838 | Msa0924050:intron | 55.0% | |
| GCATGATCATACGGTCTGCG+TGG | - | chr6_2:65492037-65492056 | Msa0924050:intron | 55.0% | |
| TGTGCGGGTATCTGTAGGGT+CGG | - | chr6_2:65492096-65492115 | Msa0924050:intron | 55.0% | |
| CTGACTGTGCGGGTATCTGT+AGG | - | chr6_2:65492101-65492120 | Msa0924050:intron | 55.0% | |
| CAGATACCCGCACAGTCAGA+AGG | + | chr6_2:65492102-65492121 | Msa0924060:CDS | 55.0% | |
| GCGAGAACTTCGCCGGAAAA+GGG | + | chr6_2:65491337-65491356 | Msa0924060:CDS | 55.0% | |
| TGCCACTGTTTCGCGAACGA+CGG | - | chr6_2:65491370-65491389 | Msa0924050:intron | 55.0% | |
| TCGTTCGCGAAACAGTGGCA+TGG | + | chr6_2:65491370-65491389 | Msa0924060:CDS | 55.0% | |
| !!! | GACGGCGGCTGTTTTTGGTT+AGG | + | chr6_2:65491488-65491507 | Msa0924060:intron | 55.0% |
| GCGTGCTCCGTACTTGTTCT+GGG | - | chr6_2:65491701-65491720 | Msa0924050:intron | 55.0% | |
| TCCTATGTGCCACACCCTCA+CGG | - | chr6_2:65491723-65491742 | Msa0924050:intron | 55.0% | |
| GATCAGCCGATCCTATGACC+TGG | + | chr6_2:65491741-65491760 | Msa0924060:intron | 55.0% | |
| CAGATCAGCATACTCTCCCC+AGG | - | chr6_2:65491819-65491838 | Msa0924050:intron | 55.0% | |
| GCATGATCATACGGTCTGCG+TGG | - | chr6_2:65492037-65492056 | Msa0924050:intron | 55.0% | |
| TGTGCGGGTATCTGTAGGGT+CGG | - | chr6_2:65492096-65492115 | Msa0924050:intron | 55.0% | |
| CTGACTGTGCGGGTATCTGT+AGG | - | chr6_2:65492101-65492120 | Msa0924050:intron | 55.0% | |
| CAGATACCCGCACAGTCAGA+AGG | + | chr6_2:65492102-65492121 | Msa0924060:CDS | 55.0% | |
| AACGACGGCGAGAACTTCGC+CGG | + | chr6_2:65491330-65491349 | Msa0924060:CDS | 60.0% | |
| GGCGAGAACTTCGCCGGAAA+AGG | + | chr6_2:65491336-65491355 | Msa0924060:CDS | 60.0% | |
| CTTCGCCGGAAAAGGGAACC+CGG | + | chr6_2:65491344-65491363 | Msa0924060:CDS | 60.0% | |
| ACTGTTTCGCGAACGACGGC+CGG | - | chr6_2:65491366-65491385 | Msa0924050:intron | 60.0% | |
| AGTGGCATGGCCGTCGTTCT+TGG | + | chr6_2:65491383-65491402 | Msa0924060:CDS | 60.0% | |
| !! | GGGAAGACGGCGGCTGTTTT+TGG | + | chr6_2:65491483-65491502 | Msa0924060:intron | 60.0% |
| GGCGTGCTCCGTACTTGTTC+TGG | - | chr6_2:65491702-65491721 | Msa0924050:intron | 60.0% | |
| AAGTACGGAGCACGCCGTGA+GGG | + | chr6_2:65491706-65491725 | Msa0924060:intron | 60.0% | |
| AGGGAAGGAGTAGGGGTTGG+AGG | + | chr6_2:65491866-65491885 | Msa0924060:CDS | 60.0% | |
| TGATCGTACGGTCTGCGTGG+AGG | - | chr6_2:65491936-65491955 | Msa0924050:intron | 60.0% | |
| GCATGATCGTACGGTCTGCG+TGG | - | chr6_2:65491939-65491958 | Msa0924050:intron | 60.0% | |
| AACGACGGCGAGAACTTCGC+CGG | + | chr6_2:65491330-65491349 | Msa0924060:CDS | 60.0% | |
| GGCGAGAACTTCGCCGGAAA+AGG | + | chr6_2:65491336-65491355 | Msa0924060:CDS | 60.0% | |
| CTTCGCCGGAAAAGGGAACC+CGG | + | chr6_2:65491344-65491363 | Msa0924060:CDS | 60.0% | |
| ACTGTTTCGCGAACGACGGC+CGG | - | chr6_2:65491366-65491385 | Msa0924050:intron | 60.0% | |
| AGTGGCATGGCCGTCGTTCT+TGG | + | chr6_2:65491383-65491402 | Msa0924060:CDS | 60.0% | |
| !! | GGGAAGACGGCGGCTGTTTT+TGG | + | chr6_2:65491483-65491502 | Msa0924060:intron | 60.0% |
| GGCGTGCTCCGTACTTGTTC+TGG | - | chr6_2:65491702-65491721 | Msa0924050:intron | 60.0% | |
| AAGTACGGAGCACGCCGTGA+GGG | + | chr6_2:65491706-65491725 | Msa0924060:intron | 60.0% | |
| AGGGAAGGAGTAGGGGTTGG+AGG | + | chr6_2:65491866-65491885 | Msa0924060:CDS | 60.0% | |
| TGATCGTACGGTCTGCGTGG+AGG | - | chr6_2:65491936-65491955 | Msa0924050:intron | 60.0% | |
| GCATGATCGTACGGTCTGCG+TGG | - | chr6_2:65491939-65491958 | Msa0924050:intron | 60.0% | |
| ! | GACGGCCGGGTTCCCTTTTC+CGG | - | chr6_2:65491352-65491371 | Msa0924050:intron | 65.0% |
| CTGTTTCGCGAACGACGGCC+GGG | - | chr6_2:65491365-65491384 | Msa0924050:intron | 65.0% | |
| GGCCGTCGTTCGCGAAACAG+TGG | + | chr6_2:65491365-65491384 | Msa0924060:CDS | 65.0% | |
| CACCGAAGGGAGAAAGGCGG+CGG | + | chr6_2:65491423-65491442 | Msa0924060:CDS | 65.0% | |
| CAAGTACGGAGCACGCCGTG+AGG | + | chr6_2:65491705-65491724 | Msa0924060:intron | 65.0% | |
| ! | GCCGTGAGGGTGTGGCACAT+AGG | + | chr6_2:65491719-65491738 | Msa0924060:intron | 65.0% |
| ! | GACGGCCGGGTTCCCTTTTC+CGG | - | chr6_2:65491352-65491371 | Msa0924050:intron | 65.0% |
| CTGTTTCGCGAACGACGGCC+GGG | - | chr6_2:65491365-65491384 | Msa0924050:intron | 65.0% | |
| GGCCGTCGTTCGCGAAACAG+TGG | + | chr6_2:65491365-65491384 | Msa0924060:CDS | 65.0% | |
| CACCGAAGGGAGAAAGGCGG+CGG | + | chr6_2:65491423-65491442 | Msa0924060:CDS | 65.0% | |
| CAAGTACGGAGCACGCCGTG+AGG | + | chr6_2:65491705-65491724 | Msa0924060:intron | 65.0% | |
| ! | GCCGTGAGGGTGTGGCACAT+AGG | + | chr6_2:65491719-65491738 | Msa0924060:intron | 65.0% |
| CGCCGCCGCCTTTCTCCCTT+CGG | - | chr6_2:65491428-65491447 | Msa0924050:intron | 70.0% | |
| CGAAGGGAGAAAGGCGGCGG+CGG | + | chr6_2:65491426-65491445 | Msa0924060:CDS | 70.0% | |
| CGCCGCCGCCTTTCTCCCTT+CGG | - | chr6_2:65491428-65491447 | Msa0924050:intron | 70.0% | |
| CGAAGGGAGAAAGGCGGCGG+CGG | + | chr6_2:65491426-65491445 | Msa0924060:CDS | 70.0% | |
| CGGAGCACGCCGTGAGGGTG+TGG | + | chr6_2:65491711-65491730 | Msa0924060:intron | 75.0% | |
| CGGAGCACGCCGTGAGGGTG+TGG | + | chr6_2:65491711-65491730 | Msa0924060:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 65491211 | 65492423 | 65491211 | ID=Msa0924060;Name=Msa0924060 |
| chr6_2 | mRNA | 65491211 | 65492423 | 65491211 | ID=Msa0924060-mRNA-1;Parent=Msa0924060;Name=Msa0924060-mRNA-1;_AED=0.44;_eAED=0.72;_QI=0|0|0|0.8|1|1|5|0|248 |
| chr6_2 | exon | 65491211 | 65491231 | 65491211 | ID=Msa0924060-mRNA-1:exon:10295;Parent=Msa0924060-mRNA-1 |
| chr6_2 | exon | 65491324 | 65491497 | 65491324 | ID=Msa0924060-mRNA-1:exon:10296;Parent=Msa0924060-mRNA-1 |
| chr6_2 | exon | 65491663 | 65491707 | 65491663 | ID=Msa0924060-mRNA-1:exon:10297;Parent=Msa0924060-mRNA-1 |
| chr6_2 | exon | 65491809 | 65491898 | 65491809 | ID=Msa0924060-mRNA-1:exon:10298;Parent=Msa0924060-mRNA-1 |
| chr6_2 | exon | 65492007 | 65492423 | 65492007 | ID=Msa0924060-mRNA-1:exon:10299;Parent=Msa0924060-mRNA-1 |
| chr6_2 | CDS | 65491211 | 65491231 | 65491211 | ID=Msa0924060-mRNA-1:cds;Parent=Msa0924060-mRNA-1 |
| chr6_2 | CDS | 65491324 | 65491497 | 65491324 | ID=Msa0924060-mRNA-1:cds;Parent=Msa0924060-mRNA-1 |
| chr6_2 | CDS | 65491663 | 65491707 | 65491663 | ID=Msa0924060-mRNA-1:cds;Parent=Msa0924060-mRNA-1 |
| chr6_2 | CDS | 65491809 | 65491898 | 65491809 | ID=Msa0924060-mRNA-1:cds;Parent=Msa0924060-mRNA-1 |
| chr6_2 | CDS | 65492007 | 65492423 | 65492007 | ID=Msa0924060-mRNA-1:cds;Parent=Msa0924060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
