Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0997520 | MCH79723.1 | 73.228 | 127 | 28 | 3 | 140 | 260 | 570 | 696 | 1.20e-47 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0997520 | sp|Q7LHG5|YI31B_YEAST | 37.063 | 143 | 77 | 4 | 131 | 260 | 598 | 740 | 5.79e-17 | 84.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0997520 | A0A392LXP3 | 73.228 | 127 | 28 | 3 | 140 | 260 | 570 | 696 | 5.74e-48 | 181 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0897460 | Msa0997520 | 0.931165 | 5.649571e-94 | -8.615850e-47 |
| Msa0924060 | Msa0997520 | 0.959638 | 1.158652e-117 | -8.615850e-47 |
| Msa0967280 | Msa0997520 | 0.810844 | 9.415235e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0997520 | MtrunA17_Chr4g0041691 | 50.000 | 146 | 67 | 3 | 121 | 260 | 594 | 739 | 5.25e-36 | 135 |
| Msa0997520 | MtrunA17_Chr6g0472401 | 44.444 | 144 | 74 | 3 | 123 | 260 | 93 | 236 | 4.27e-32 | 124 |
| Msa0997520 | MtrunA17_Chr2g0306511 | 37.589 | 141 | 82 | 3 | 126 | 260 | 503 | 643 | 3.38e-23 | 98.6 |
| Msa0997520 | MtrunA17_Chr1g0170491 | 36.879 | 141 | 83 | 3 | 126 | 260 | 503 | 643 | 4.13e-22 | 95.5 |
| Msa0997520 | MtrunA17_Chr1g0175041 | 36.170 | 141 | 84 | 3 | 126 | 260 | 518 | 658 | 1.68e-21 | 93.6 |
| Msa0997520 | MtrunA17_Chr8g0367821 | 36.170 | 141 | 84 | 3 | 126 | 260 | 128 | 268 | 2.04e-21 | 92.8 |
| Msa0997520 | MtrunA17_Chr6g0478941 | 36.879 | 141 | 83 | 3 | 126 | 260 | 128 | 268 | 2.26e-21 | 93.2 |
| Msa0997520 | MtrunA17_Chr0c01g0489031 | 36.170 | 141 | 84 | 3 | 126 | 260 | 503 | 643 | 2.44e-21 | 93.2 |
| Msa0997520 | MtrunA17_Chr4g0019441 | 36.170 | 141 | 84 | 3 | 126 | 260 | 479 | 619 | 2.65e-21 | 93.2 |
| Msa0997520 | MtrunA17_Chr6g0475571 | 36.170 | 141 | 84 | 3 | 126 | 260 | 142 | 282 | 3.37e-21 | 92.8 |
| Msa0997520 | MtrunA17_Chr8g0363431 | 36.170 | 141 | 84 | 3 | 126 | 260 | 545 | 685 | 3.46e-21 | 92.8 |
| Msa0997520 | MtrunA17_Chr4g0044301 | 36.170 | 141 | 84 | 3 | 126 | 260 | 503 | 643 | 4.10e-21 | 92.8 |
| Msa0997520 | MtrunA17_Chr3g0105561 | 36.170 | 141 | 84 | 3 | 126 | 260 | 94 | 234 | 6.45e-21 | 92.0 |
| Msa0997520 | MtrunA17_Chr3g0096731 | 36.170 | 141 | 84 | 3 | 126 | 260 | 264 | 404 | 7.30e-21 | 91.7 |
| Msa0997520 | MtrunA17_Chr2g0306251 | 36.170 | 141 | 84 | 3 | 126 | 260 | 362 | 502 | 1.19e-20 | 91.3 |
| Msa0997520 | MtrunA17_Chr2g0306051 | 35.915 | 142 | 84 | 3 | 126 | 260 | 470 | 611 | 1.37e-20 | 90.9 |
| Msa0997520 | MtrunA17_Chr6g0452431 | 35.714 | 140 | 84 | 3 | 127 | 260 | 426 | 565 | 1.45e-20 | 90.9 |
| Msa0997520 | MtrunA17_Chr4g0053141 | 35.461 | 141 | 85 | 3 | 126 | 260 | 503 | 643 | 1.49e-20 | 90.9 |
| Msa0997520 | MtrunA17_Chr2g0306271 | 35.461 | 141 | 85 | 3 | 126 | 260 | 503 | 643 | 2.04e-20 | 90.5 |
| Msa0997520 | MtrunA17_Chr3g0096001 | 41.007 | 139 | 76 | 3 | 128 | 260 | 450 | 588 | 2.59e-20 | 90.1 |
| Msa0997520 | MtrunA17_Chr2g0306241 | 33.784 | 148 | 91 | 4 | 120 | 260 | 10 | 157 | 8.40e-20 | 88.6 |
| Msa0997520 | MtrunA17_Chr1g0170501 | 34.286 | 140 | 86 | 3 | 127 | 260 | 320 | 459 | 9.84e-20 | 88.6 |
| Msa0997520 | MtrunA17_Chr4g0018081 | 36.090 | 133 | 79 | 3 | 134 | 260 | 409 | 541 | 4.65e-19 | 86.7 |
| Msa0997520 | MtrunA17_Chr7g0231051 | 34.752 | 141 | 86 | 3 | 126 | 260 | 531 | 671 | 5.93e-19 | 86.3 |
| Msa0997520 | MtrunA17_Chr1g0172201 | 34.752 | 141 | 86 | 3 | 126 | 260 | 42 | 182 | 4.81e-18 | 83.6 |
| Msa0997520 | MtrunA17_Chr3g0084281 | 40.876 | 137 | 75 | 3 | 130 | 260 | 559 | 695 | 5.72e-18 | 83.2 |
| Msa0997520 | MtrunA17_Chr8g0358641 | 30.508 | 118 | 77 | 2 | 126 | 238 | 502 | 619 | 6.12e-13 | 68.2 |
| Msa0997520 | MtrunA17_Chr7g0226861 | 40.000 | 105 | 58 | 2 | 130 | 229 | 559 | 663 | 3.50e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 79 sgRNAs with CRISPR-Local
Find 372 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCGTGCTCCGTACTTGTTC+TGG | 0.204772 | 6_4:-77439085 | Msa0997500:intron |
| TTAAAATTGGATTTGAAATC+AGG | 0.252831 | 6_4:+77439714 | Msa0997520:CDS |
| AACTCATCAATCACTGGAAT+TGG | 0.336395 | 6_4:-77439672 | Msa0997500:intron |
| TGTGAAGAGCATACTTGATT+TGG | 0.351934 | 6_4:+77438019 | Msa0997520:CDS |
| AGTGGCATGGCCGTCGTTCT+TGG | 0.355616 | 6_4:+77438768 | Msa0997520:CDS |
| GCTACAGACATGTTAATATC+AGG | 0.358635 | 6_4:+77439528 | Msa0997520:CDS |
| ATGGCCGTCGTTCTTGGTTA+AGG | 0.382787 | 6_4:+77438774 | Msa0997520:CDS |
| TATCTGTAGGGTCGGATGTT+GGG | 0.387075 | 6_4:-77439471 | Msa0997500:intron |
| GGAGAGTATGCTGATCTGTT+TGG | 0.390541 | 6_4:+77439207 | Msa0997520:CDS |
| AGGGAAGGAGTAGGGGTTGG+AGG | 0.396211 | 6_4:+77439252 | Msa0997520:CDS |
| CGCCGCCGCCTTTCTCCCTT+CGG | 0.399756 | 6_4:-77438810 | Msa0997500:intron |
| GGCGAGAACTTCGCCGGAAA+AGG | 0.404460 | 6_4:+77438721 | Msa0997520:CDS |
| GCGTGCTCCGTACTTGTTCT+GGG | 0.407425 | 6_4:-77439084 | Msa0997500:intron |
| ACTGTTTCGCGAACGACGGC+CGG | 0.407676 | 6_4:-77438748 | Msa0997500:intron |
| TCTCTACAGGAACTCGATCC+TGG | 0.424052 | 6_4:+77439040 | Msa0997520:intron |
| TTGACTGTGCGGGTATCTGT+AGG | 0.435837 | 6_4:-77439484 | Msa0997500:intron |
| TATACACACCTGAGGTGAAA+AGG | 0.440121 | 6_4:+77439232 | Msa0997520:CDS |
| GTATCTGTAGGGTCGGATGT+TGG | 0.445151 | 6_4:-77439472 | Msa0997500:intron |
| CGAAGGGAGAAAGGCGGCGG+CGG | 0.449428 | 6_4:+77438811 | Msa0997520:CDS |
| TTCCATTCTCAGCTTTGAAA+CGG | 0.455070 | 6_4:-77438834 | Msa0997500:intron |
| GAGAATGGAAGAATGAAGAG+AGG | 0.475940 | 6_4:+77438847 | Msa0997520:CDS |
| CATACTTGATTTGGAGTTGG+AGG | 0.485218 | 6_4:+77438028 | Msa0997520:CDS |
| AGGTGAAAAGGGAAGGAGTA+GGG | 0.486203 | 6_4:+77439244 | Msa0997520:CDS |
| CAGATACCCGCACAGTCAAA+AGG | 0.489507 | 6_4:+77439488 | Msa0997520:CDS |
| GAGCATACTTGATTTGGAGT+TGG | 0.491819 | 6_4:+77438025 | Msa0997520:CDS |
| TGTTAATATCAGGACTCATC+AGG | 0.494575 | 6_4:+77439538 | Msa0997520:CDS |
| TCAAAACACCGAAGGGAGAA+AGG | 0.495459 | 6_4:+77438802 | Msa0997520:CDS |
| TAAAATTGGATTTGAAATCA+GGG | 0.502270 | 6_4:+77439715 | Msa0997520:CDS |
| AAAAGGGAAGGAGTAGGGGT+TGG | 0.505918 | 6_4:+77439249 | Msa0997520:CDS |
| GGCCGTTTCAAAGCTGAGAA+TGG | 0.509090 | 6_4:+77438832 | Msa0997520:CDS |
| CACCGAAGGGAGAAAGGCGG+CGG | 0.509135 | 6_4:+77438808 | Msa0997520:CDS |
| CCCCACAACTCATCAATCAC+TGG | 0.517138 | 6_4:-77439678 | Msa0997500:intron |
| TGATCATGCTATTGAAATCA+AGG | 0.517444 | 6_4:+77439434 | Msa0997520:CDS |
| GTATGCTCTTCACACCCCTC+TGG | 0.520136 | 6_4:-77438010 | Msa0997500:intron |
| TCCAGTGATTGATGAGTTGT+GGG | 0.523941 | 6_4:+77439677 | Msa0997520:CDS |
| ATACACACCTGAGGTGAAAA+GGG | 0.525243 | 6_4:+77439233 | Msa0997520:CDS |
| GCGAGAACTTCGCCGGAAAA+GGG | 0.525329 | 6_4:+77438722 | Msa0997520:CDS |
| CTGTTTCGCGAACGACGGCC+GGG | 0.528326 | 6_4:-77438747 | Msa0997500:intron |
| ACTGAATATTTAACTCATGA+AGG | 0.530281 | 6_4:+77439774 | Msa0997520:CDS |
| TGACTGTGCGGGTATCTGTA+GGG | 0.532943 | 6_4:-77439483 | Msa0997500:intron |
| GGTGAAAAGGGAAGGAGTAG+GGG | 0.535770 | 6_4:+77439245 | Msa0997520:CDS |
| AGAAAAGACATGGCAGTTGG+TGG | 0.537906 | 6_4:+77439601 | Msa0997520:CDS |
| TTCCAGTGATTGATGAGTTG+TGG | 0.548790 | 6_4:+77439676 | Msa0997520:CDS |
| GAGGTGAAAAGGGAAGGAGT+AGG | 0.549365 | 6_4:+77439243 | Msa0997520:CDS |
| TGCCACTGTTTCGCGAACGA+CGG | 0.553748 | 6_4:-77438752 | Msa0997500:intron |
| TGCTATTGAAATCAAGGAGG+CGG | 0.558188 | 6_4:+77439440 | Msa0997520:CDS |
| ATTTCAATAGCATGATCATA+CGG | 0.561310 | 6_4:-77439429 | Msa0997500:intron |
| CTTCGCCGGAAAAGGGAACC+CGG | 0.564159 | 6_4:+77438729 | Msa0997520:CDS |
| GCATCAGATTCAAACGAAAG+AGG | 0.564841 | 6_4:+77439737 | Msa0997520:CDS |
| TGGTATTCAGAGCTCAACCT+GGG | 0.576116 | 6_4:+77439185 | Msa0997520:intron |
| GGCCGTCGTTCGCGAAACAG+TGG | 0.579434 | 6_4:+77438750 | Msa0997520:CDS |
| CATCAGATTCAAACGAAAGA+GGG | 0.582992 | 6_4:+77439738 | Msa0997520:CDS |
| TTGGTATTCAGAGCTCAACC+TGG | 0.583240 | 6_4:+77439184 | Msa0997520:intron |
| GGTTGTTTCAAAACACCGAA+GGG | 0.585404 | 6_4:+77438795 | Msa0997520:CDS |
| AAGAATGAAGAGAGGGAAGA+CGG | 0.588164 | 6_4:+77438855 | Msa0997520:CDS |
| TCAAGAAAAGACATGGCAGT+TGG | 0.589862 | 6_4:+77439598 | Msa0997520:CDS |
| AGAATGGAAGAATGAAGAGA+GGG | 0.594765 | 6_4:+77438848 | Msa0997520:CDS |
| CAGATCAGCATACTCTCCCC+AGG | 0.595759 | 6_4:-77439202 | Msa0997500:intron |
| AACGACGGCGAGAACTTCGC+CGG | 0.596391 | 6_4:+77438715 | Msa0997520:CDS |
| AGGTTGTTTCAAAACACCGA+AGG | 0.602657 | 6_4:+77438794 | Msa0997520:CDS |
| TCGTTCGCGAAACAGTGGCA+TGG | 0.606573 | 6_4:+77438755 | Msa0997520:CDS |
| TGTGCGGGTATCTGTAGGGT+CGG | 0.615253 | 6_4:-77439479 | Msa0997500:intron |
| GGAGGAAAAGATTTACCAGA+GGG | 0.616697 | 6_4:+77437995 | Msa0997520:CDS |
| ACACCTGAGGTGAAAAGGGA+AGG | 0.620205 | 6_4:+77439237 | Msa0997520:CDS |
| ATTCATGTCAAGAAAAGACA+TGG | 0.630694 | 6_4:+77439591 | Msa0997520:CDS |
| GATTGATGAGTTGTGGGGAG+CGG | 0.637510 | 6_4:+77439683 | Msa0997520:CDS |
| GTTTGGTTTATACACACCTG+AGG | 0.640201 | 6_4:+77439224 | Msa0997520:CDS |
| CTAGCATATCGACTTACAGT+GGG | 0.640420 | 6_4:-77439561 | Msa0997500:intron |
| GACCCTACAGATATTTCGAG+AGG | 0.680595 | 6_4:+77439383 | Msa0997520:intron |
| GCTAGCATATCGACTTACAG+TGG | 0.683609 | 6_4:-77439562 | Msa0997500:intron |
| AATGAAGAGAGGGAAGACGG+CGG | 0.691651 | 6_4:+77438858 | Msa0997520:CDS |
| GGTATTCAGAGCTCAACCTG+GGG | 0.697483 | 6_4:+77439186 | Msa0997520:intron |
| TGGAGGAAAAGATTTACCAG+AGG | 0.722286 | 6_4:+77437994 | Msa0997520:CDS |
| ACAACCTTAACCAAGAACGA+CGG | 0.723680 | 6_4:-77438778 | Msa0997500:intron |
| AAACACCGAAGGGAGAAAGG+CGG | 0.746676 | 6_4:+77438805 | Msa0997520:CDS |
| CCAGTGATTGATGAGTTGTG+GGG | 0.752783 | 6_4:+77439678 | Msa0997520:CDS |
| TGAGGGAAGAGAGTGAACGA+CGG | 0.756419 | 6_4:+77438700 | Msa0997520:intron |
| TCATGCTATTGAAATCAAGG+AGG | 0.771023 | 6_4:+77439437 | Msa0997520:CDS |
| GAGGAAAAGATTTACCAGAG+GGG | 0.812441 | 6_4:+77437996 | Msa0997520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATCGAAAAAAATAGTT+AGG | + | chr6_4:77438645-77438664 | Msa0997520:intron | 15.0% |
| !! | AAAATCGAAAAAAATAGTTA+GGG | + | chr6_4:77438646-77438665 | Msa0997520:intron | 15.0% |
| !! | AAAAATCGAAAAAAATAGTT+AGG | + | chr6_4:77438645-77438664 | Msa0997520:intron | 15.0% |
| !! | AAAATCGAAAAAAATAGTTA+GGG | + | chr6_4:77438646-77438665 | Msa0997520:intron | 15.0% |
| !! | TGATATTATTGATGTTAACT+GGG | - | chr6_4:77438208-77438227 | Msa0997500:intron | 20.0% |
| !! | ATGATATTATTGATGTTAAC+TGG | - | chr6_4:77438209-77438228 | Msa0997500:intron | 20.0% |
| !! | TCAATAATATCATAACTACT+AGG | + | chr6_4:77438216-77438235 | Msa0997520:intron | 20.0% |
| !!! | TTTTCTTGACATGAATTAAA+AGG | - | chr6_4:77439587-77439606 | Msa0997500:intron | 20.0% |
| !!! | AGCGGTAAAATTTTTAAAAT+TGG | + | chr6_4:77439701-77439720 | Msa0997520:CDS | 20.0% |
| !!! | TTAAAATTGGATTTGAAATC+AGG | + | chr6_4:77439714-77439733 | Msa0997520:CDS | 20.0% |
| !!! | TAAAATTGGATTTGAAATCA+GGG | + | chr6_4:77439715-77439734 | Msa0997520:CDS | 20.0% |
| !! | TGATATTATTGATGTTAACT+GGG | - | chr6_4:77438208-77438227 | Msa0997500:intron | 20.0% |
| !! | ATGATATTATTGATGTTAAC+TGG | - | chr6_4:77438209-77438228 | Msa0997500:intron | 20.0% |
| !! | TCAATAATATCATAACTACT+AGG | + | chr6_4:77438216-77438235 | Msa0997520:intron | 20.0% |
| !!! | TTTTCTTGACATGAATTAAA+AGG | - | chr6_4:77439587-77439606 | Msa0997500:intron | 20.0% |
| !!! | AGCGGTAAAATTTTTAAAAT+TGG | + | chr6_4:77439701-77439720 | Msa0997520:CDS | 20.0% |
| !!! | TTAAAATTGGATTTGAAATC+AGG | + | chr6_4:77439714-77439733 | Msa0997520:CDS | 20.0% |
| !!! | TAAAATTGGATTTGAAATCA+GGG | + | chr6_4:77439715-77439734 | Msa0997520:CDS | 20.0% |
| ! | TGGAATGCTAAAACAATTTA+TGG | - | chr6_4:77438162-77438181 | Msa0997500:intron | 25.0% |
| ! | CTTACTAAATCATAACTACT+AGG | + | chr6_4:77438323-77438342 | Msa0997520:intron | 25.0% |
| !!! | CAATATGTTGTTTCTATTGA+AGG | - | chr6_4:77438574-77438593 | Msa0997500:intron | 25.0% |
| ! | GAAAAAAATAGTTAGGGTTA+TGG | + | chr6_4:77438652-77438671 | Msa0997520:intron | 25.0% |
| ! | ACCATGTCATAACTATATAT+AGG | + | chr6_4:77438934-77438953 | Msa0997520:intron | 25.0% |
| ! | CCATGTCATAACTATATATA+GGG | + | chr6_4:77438935-77438954 | Msa0997520:intron | 25.0% |
| ! | ATTTCAATAGCATGATCATA+CGG | - | chr6_4:77439432-77439451 | Msa0997500:intron | 25.0% |
| ! | ACTGAATATTTAACTCATGA+AGG | + | chr6_4:77439774-77439793 | Msa0997520:CDS | 25.0% |
| ! | TGGAATGCTAAAACAATTTA+TGG | - | chr6_4:77438162-77438181 | Msa0997500:intron | 25.0% |
| ! | CTTACTAAATCATAACTACT+AGG | + | chr6_4:77438323-77438342 | Msa0997520:intron | 25.0% |
| !!! | CAATATGTTGTTTCTATTGA+AGG | - | chr6_4:77438574-77438593 | Msa0997500:intron | 25.0% |
| ! | GAAAAAAATAGTTAGGGTTA+TGG | + | chr6_4:77438652-77438671 | Msa0997520:intron | 25.0% |
| ! | ACCATGTCATAACTATATAT+AGG | + | chr6_4:77438934-77438953 | Msa0997520:intron | 25.0% |
| ! | CCATGTCATAACTATATATA+GGG | + | chr6_4:77438935-77438954 | Msa0997520:intron | 25.0% |
| ! | ATTTCAATAGCATGATCATA+CGG | - | chr6_4:77439432-77439451 | Msa0997500:intron | 25.0% |
| ! | ACTGAATATTTAACTCATGA+AGG | + | chr6_4:77439774-77439793 | Msa0997520:CDS | 25.0% |
| ATAAATTCCCTTACAAAGAC+TGG | - | chr6_4:77438182-77438201 | Msa0997500:intron | 30.0% | |
| TATTATTGATGTTAACTGGG+AGG | - | chr6_4:77438205-77438224 | Msa0997500:intron | 30.0% | |
| ! | TATGTAGTTTCTGATTTTGC+TGG | - | chr6_4:77438416-77438435 | Msa0997500:intron | 30.0% |
| !! | TATGTTGTTTCTATTGAAGG+AGG | - | chr6_4:77438571-77438590 | Msa0997500:intron | 30.0% |
| ! | TTTCACACAACCTTTTGTAA+GGG | - | chr6_4:77438608-77438627 | Msa0997500:intron | 30.0% |
| ! | TTTTCACACAACCTTTTGTA+AGG | - | chr6_4:77438609-77438628 | Msa0997500:intron | 30.0% |
| TTGTGTGAAAAACAGAGTTA+AGG | + | chr6_4:77438618-77438637 | Msa0997520:intron | 30.0% | |
| TGTGTGAAAAACAGAGTTAA+GGG | + | chr6_4:77438619-77438638 | Msa0997520:intron | 30.0% | |
| AAAAATAGTTAGGGTTATGG+AGG | + | chr6_4:77438655-77438674 | Msa0997520:intron | 30.0% | |
| TATGGAGGAGAAAACAAAAA+CGG | + | chr6_4:77438670-77438689 | Msa0997520:intron | 30.0% | |
| CCCTATATATAGTTATGACA+TGG | - | chr6_4:77438938-77438957 | Msa0997500:intron | 30.0% | |
| ! | TGAAATTGGGTTTTACGAAT+CGG | - | chr6_4:77438987-77439006 | Msa0997500:intron | 30.0% |
| AACGTAATGATAAACGAGTT+CGG | - | chr6_4:77439020-77439039 | Msa0997500:intron | 30.0% | |
| TTATCATTACGTTTCTCTAC+AGG | + | chr6_4:77439027-77439046 | Msa0997520:intron | 30.0% | |
| ACCTTGATGTGTCAATTATT+TGG | + | chr6_4:77439165-77439184 | Msa0997520:intron | 30.0% | |
| ACCAAATAATTGACACATCA+AGG | - | chr6_4:77439169-77439188 | Msa0997500:intron | 30.0% | |
| ATTTCAATAGCATGATCGTA+CGG | - | chr6_4:77439334-77439353 | Msa0997500:intron | 30.0% | |
| TGATCATGCTATTGAAATCA+AGG | + | chr6_4:77439434-77439453 | Msa0997520:CDS | 30.0% | |
| ATTCATGTCAAGAAAAGACA+TGG | + | chr6_4:77439591-77439610 | Msa0997520:CDS | 30.0% | |
| !!! | GTGGTTTTGTACTGATTATA+GGG | + | chr6_4:77439620-77439639 | Msa0997520:CDS | 30.0% |
| ATAAATTCCCTTACAAAGAC+TGG | - | chr6_4:77438182-77438201 | Msa0997500:intron | 30.0% | |
| TATTATTGATGTTAACTGGG+AGG | - | chr6_4:77438205-77438224 | Msa0997500:intron | 30.0% | |
| ! | TATGTAGTTTCTGATTTTGC+TGG | - | chr6_4:77438416-77438435 | Msa0997500:intron | 30.0% |
| !! | TATGTTGTTTCTATTGAAGG+AGG | - | chr6_4:77438571-77438590 | Msa0997500:intron | 30.0% |
| ! | TTTCACACAACCTTTTGTAA+GGG | - | chr6_4:77438608-77438627 | Msa0997500:intron | 30.0% |
| ! | TTTTCACACAACCTTTTGTA+AGG | - | chr6_4:77438609-77438628 | Msa0997500:intron | 30.0% |
| TTGTGTGAAAAACAGAGTTA+AGG | + | chr6_4:77438618-77438637 | Msa0997520:intron | 30.0% | |
| TGTGTGAAAAACAGAGTTAA+GGG | + | chr6_4:77438619-77438638 | Msa0997520:intron | 30.0% | |
| AAAAATAGTTAGGGTTATGG+AGG | + | chr6_4:77438655-77438674 | Msa0997520:intron | 30.0% | |
| TATGGAGGAGAAAACAAAAA+CGG | + | chr6_4:77438670-77438689 | Msa0997520:intron | 30.0% | |
| CCCTATATATAGTTATGACA+TGG | - | chr6_4:77438938-77438957 | Msa0997500:intron | 30.0% | |
| ! | TGAAATTGGGTTTTACGAAT+CGG | - | chr6_4:77438987-77439006 | Msa0997500:intron | 30.0% |
| AACGTAATGATAAACGAGTT+CGG | - | chr6_4:77439020-77439039 | Msa0997500:intron | 30.0% | |
| TTATCATTACGTTTCTCTAC+AGG | + | chr6_4:77439027-77439046 | Msa0997520:intron | 30.0% | |
| ACCTTGATGTGTCAATTATT+TGG | + | chr6_4:77439165-77439184 | Msa0997520:intron | 30.0% | |
| ACCAAATAATTGACACATCA+AGG | - | chr6_4:77439169-77439188 | Msa0997500:intron | 30.0% | |
| ATTTCAATAGCATGATCGTA+CGG | - | chr6_4:77439334-77439353 | Msa0997500:intron | 30.0% | |
| TGATCATGCTATTGAAATCA+AGG | + | chr6_4:77439434-77439453 | Msa0997520:CDS | 30.0% | |
| ATTCATGTCAAGAAAAGACA+TGG | + | chr6_4:77439591-77439610 | Msa0997520:CDS | 30.0% | |
| !!! | GTGGTTTTGTACTGATTATA+GGG | + | chr6_4:77439620-77439639 | Msa0997520:CDS | 30.0% |
| ! | TGTGAAGAGCATACTTGATT+TGG | + | chr6_4:77438019-77438038 | Msa0997520:CDS | 35.0% |
| TAATAATCTCCTCGCAGTAA+TGG | - | chr6_4:77438137-77438156 | Msa0997500:intron | 35.0% | |
| TTAGCATTCCAGTCTTTGTA+AGG | + | chr6_4:77438171-77438190 | Msa0997520:intron | 35.0% | |
| TAGCATTCCAGTCTTTGTAA+GGG | + | chr6_4:77438172-77438191 | Msa0997520:intron | 35.0% | |
| GAACTAGTAGAGATGAAAGA+GGG | - | chr6_4:77438379-77438398 | Msa0997500:intron | 35.0% | |
| TTTGCTGGAACTAACAGATA+GGG | - | chr6_4:77438401-77438420 | Msa0997500:intron | 35.0% | |
| ! | TTTTGCTGGAACTAACAGAT+AGG | - | chr6_4:77438402-77438421 | Msa0997500:intron | 35.0% |
| TACATAGCTTTCTTGACATC+CGG | + | chr6_4:77438430-77438449 | Msa0997520:intron | 35.0% | |
| TATTGAAGGAGGAACAAGAA+AGG | - | chr6_4:77438560-77438579 | Msa0997500:intron | 35.0% | |
| AATGTTGAAGCCCTTACAAA+AGG | + | chr6_4:77438595-77438614 | Msa0997520:intron | 35.0% | |
| ATGGAGGAGAAAACAAAAAC+GGG | + | chr6_4:77438671-77438690 | Msa0997520:intron | 35.0% | |
| ! | GAGAAAACAAAAACGGGTTT+AGG | + | chr6_4:77438677-77438696 | Msa0997520:intron | 35.0% |
| !! | TTCCATTCTCAGCTTTGAAA+CGG | - | chr6_4:77438837-77438856 | Msa0997500:intron | 35.0% |
| AGAATGGAAGAATGAAGAGA+GGG | + | chr6_4:77438848-77438867 | Msa0997520:CDS | 35.0% | |
| !!! | GGTTAGGTTTTTTTTCGTGA+AGG | + | chr6_4:77438889-77438908 | Msa0997520:intron | 35.0% |
| !! | AGGGAACCGTGTTTTTAAAT+TGG | + | chr6_4:77438954-77438973 | Msa0997520:intron | 35.0% |
| TCGGGTCCAATTTAAAAACA+CGG | - | chr6_4:77438963-77438982 | Msa0997500:intron | 35.0% | |
| ! | GAAATTGGGTTTTACGAATC+GGG | - | chr6_4:77438986-77439005 | Msa0997500:intron | 35.0% |
| CGGCTGACAAAATTGAAATT+GGG | - | chr6_4:77439000-77439019 | Msa0997500:intron | 35.0% | |
| TCGGCTGACAAAATTGAAAT+TGG | - | chr6_4:77439001-77439020 | Msa0997500:intron | 35.0% | |
| CGATCATGCTATTGAAATCA+AGG | + | chr6_4:77439336-77439355 | Msa0997520:intron | 35.0% | |
| TCATGCTATTGAAATCAAGG+AGG | + | chr6_4:77439339-77439358 | Msa0997520:intron | 35.0% | |
| TACCTCTCGAAATATCTGTA+GGG | - | chr6_4:77439388-77439407 | Msa0997500:intron | 35.0% | |
| ATACCTCTCGAAATATCTGT+AGG | - | chr6_4:77439389-77439408 | Msa0997500:intron | 35.0% | |
| TCATGCTATTGAAATCAAGG+AGG | + | chr6_4:77439339-77439358 | Msa0997520:intron | 35.0% | |
| GCTACAGACATGTTAATATC+AGG | + | chr6_4:77439528-77439547 | Msa0997520:CDS | 35.0% | |
| TGTTAATATCAGGACTCATC+AGG | + | chr6_4:77439538-77439557 | Msa0997520:CDS | 35.0% | |
| !!! | GGTGGTTTTGTACTGATTAT+AGG | + | chr6_4:77439619-77439638 | Msa0997520:CDS | 35.0% |
| AACTCATCAATCACTGGAAT+TGG | - | chr6_4:77439675-77439694 | Msa0997500:intron | 35.0% | |
| CATCAGATTCAAACGAAAGA+GGG | + | chr6_4:77439738-77439757 | Msa0997520:CDS | 35.0% | |
| ! | TGTGAAGAGCATACTTGATT+TGG | + | chr6_4:77438019-77438038 | Msa0997520:CDS | 35.0% |
| TAATAATCTCCTCGCAGTAA+TGG | - | chr6_4:77438137-77438156 | Msa0997500:intron | 35.0% | |
| TTAGCATTCCAGTCTTTGTA+AGG | + | chr6_4:77438171-77438190 | Msa0997520:intron | 35.0% | |
| TAGCATTCCAGTCTTTGTAA+GGG | + | chr6_4:77438172-77438191 | Msa0997520:intron | 35.0% | |
| GAACTAGTAGAGATGAAAGA+GGG | - | chr6_4:77438379-77438398 | Msa0997500:intron | 35.0% | |
| TTTGCTGGAACTAACAGATA+GGG | - | chr6_4:77438401-77438420 | Msa0997500:intron | 35.0% | |
| ! | TTTTGCTGGAACTAACAGAT+AGG | - | chr6_4:77438402-77438421 | Msa0997500:intron | 35.0% |
| TACATAGCTTTCTTGACATC+CGG | + | chr6_4:77438430-77438449 | Msa0997520:intron | 35.0% | |
| TATTGAAGGAGGAACAAGAA+AGG | - | chr6_4:77438560-77438579 | Msa0997500:intron | 35.0% | |
| AATGTTGAAGCCCTTACAAA+AGG | + | chr6_4:77438595-77438614 | Msa0997520:intron | 35.0% | |
| ATGGAGGAGAAAACAAAAAC+GGG | + | chr6_4:77438671-77438690 | Msa0997520:intron | 35.0% | |
| ! | GAGAAAACAAAAACGGGTTT+AGG | + | chr6_4:77438677-77438696 | Msa0997520:intron | 35.0% |
| !! | TTCCATTCTCAGCTTTGAAA+CGG | - | chr6_4:77438837-77438856 | Msa0997500:intron | 35.0% |
| AGAATGGAAGAATGAAGAGA+GGG | + | chr6_4:77438848-77438867 | Msa0997520:CDS | 35.0% | |
| !!! | GGTTAGGTTTTTTTTCGTGA+AGG | + | chr6_4:77438889-77438908 | Msa0997520:intron | 35.0% |
| !! | AGGGAACCGTGTTTTTAAAT+TGG | + | chr6_4:77438954-77438973 | Msa0997520:intron | 35.0% |
| TCGGGTCCAATTTAAAAACA+CGG | - | chr6_4:77438963-77438982 | Msa0997500:intron | 35.0% | |
| ! | GAAATTGGGTTTTACGAATC+GGG | - | chr6_4:77438986-77439005 | Msa0997500:intron | 35.0% |
| CGGCTGACAAAATTGAAATT+GGG | - | chr6_4:77439000-77439019 | Msa0997500:intron | 35.0% | |
| TCGGCTGACAAAATTGAAAT+TGG | - | chr6_4:77439001-77439020 | Msa0997500:intron | 35.0% | |
| CGATCATGCTATTGAAATCA+AGG | + | chr6_4:77439336-77439355 | Msa0997520:intron | 35.0% | |
| TCATGCTATTGAAATCAAGG+AGG | + | chr6_4:77439339-77439358 | Msa0997520:intron | 35.0% | |
| TACCTCTCGAAATATCTGTA+GGG | - | chr6_4:77439388-77439407 | Msa0997500:intron | 35.0% | |
| ATACCTCTCGAAATATCTGT+AGG | - | chr6_4:77439389-77439408 | Msa0997500:intron | 35.0% | |
| TCATGCTATTGAAATCAAGG+AGG | + | chr6_4:77439339-77439358 | Msa0997520:intron | 35.0% | |
| GCTACAGACATGTTAATATC+AGG | + | chr6_4:77439528-77439547 | Msa0997520:CDS | 35.0% | |
| TGTTAATATCAGGACTCATC+AGG | + | chr6_4:77439538-77439557 | Msa0997520:CDS | 35.0% | |
| !!! | GGTGGTTTTGTACTGATTAT+AGG | + | chr6_4:77439619-77439638 | Msa0997520:CDS | 35.0% |
| AACTCATCAATCACTGGAAT+TGG | - | chr6_4:77439675-77439694 | Msa0997500:intron | 35.0% | |
| CATCAGATTCAAACGAAAGA+GGG | + | chr6_4:77439738-77439757 | Msa0997520:CDS | 35.0% | |
| TGGAGGAAAAGATTTACCAG+AGG | + | chr6_4:77437994-77438013 | Msa0997520:CDS | 40.0% | |
| GGAGGAAAAGATTTACCAGA+GGG | + | chr6_4:77437995-77438014 | Msa0997520:CDS | 40.0% | |
| GAGGAAAAGATTTACCAGAG+GGG | + | chr6_4:77437996-77438015 | Msa0997520:CDS | 40.0% | |
| !! | GAGCATACTTGATTTGGAGT+TGG | + | chr6_4:77438025-77438044 | Msa0997520:CDS | 40.0% |
| !! | CATACTTGATTTGGAGTTGG+AGG | + | chr6_4:77438028-77438047 | Msa0997520:CDS | 40.0% |
| AGAACCATTCACATCTCAGT+GGG | + | chr6_4:77438073-77438092 | Msa0997520:intron | 40.0% | |
| TTGTAAGTTCCATTACTGCG+AGG | + | chr6_4:77438125-77438144 | Msa0997520:intron | 40.0% | |
| GTAGAGATGAAAGAGGGAAT+TGG | - | chr6_4:77438373-77438392 | Msa0997500:intron | 40.0% | |
| GGAACTAGTAGAGATGAAAG+AGG | - | chr6_4:77438380-77438399 | Msa0997500:intron | 40.0% | |
| AGATGTTCAACCTTGTCGAA+TGG | - | chr6_4:77438461-77438480 | Msa0997500:intron | 40.0% | |
| !! | ATACAGAGAGAGGCATCATT+TGG | - | chr6_4:77438497-77438516 | Msa0997500:intron | 40.0% |
| GTGAAAAACAGAGTTAAGGG+AGG | + | chr6_4:77438622-77438641 | Msa0997520:intron | 40.0% | |
| ! | AACAAAAACGGGTTTAGGTG+AGG | + | chr6_4:77438682-77438701 | Msa0997520:intron | 40.0% |
| ! | ACAAAAACGGGTTTAGGTGA+GGG | + | chr6_4:77438683-77438702 | Msa0997520:intron | 40.0% |
| ACAACCTTAACCAAGAACGA+CGG | - | chr6_4:77438781-77438800 | Msa0997500:intron | 40.0% | |
| ! | AGGTTGTTTCAAAACACCGA+AGG | + | chr6_4:77438794-77438813 | Msa0997520:CDS | 40.0% |
| ! | GGTTGTTTCAAAACACCGAA+GGG | + | chr6_4:77438795-77438814 | Msa0997520:CDS | 40.0% |
| GAGAATGGAAGAATGAAGAG+AGG | + | chr6_4:77438847-77438866 | Msa0997520:CDS | 40.0% | |
| AAGAATGAAGAGAGGGAAGA+CGG | + | chr6_4:77438855-77438874 | Msa0997520:CDS | 40.0% | |
| ! | ATTTTGTGTGTTTTGTGGCC+AGG | - | chr6_4:77439061-77439080 | Msa0997500:intron | 40.0% |
| !! | GGTCGATTTTGTGTGTTTTG+TGG | - | chr6_4:77439066-77439085 | Msa0997500:intron | 40.0% |
| AAATCGACCCAGAACAAGTA+CGG | + | chr6_4:77439077-77439096 | Msa0997520:intron | 40.0% | |
| AAAAATGAGTGCCAGGTCAT+AGG | - | chr6_4:77439141-77439160 | Msa0997500:intron | 40.0% | |
| GGTAGTAAAAAATGAGTGCC+AGG | - | chr6_4:77439148-77439167 | Msa0997500:intron | 40.0% | |
| ! | GTTTGGTTTATACACACCTG+AGG | + | chr6_4:77439224-77439243 | Msa0997520:CDS | 40.0% |
| TATACACACCTGAGGTGAAA+AGG | + | chr6_4:77439232-77439251 | Msa0997520:CDS | 40.0% | |
| ATACACACCTGAGGTGAAAA+GGG | + | chr6_4:77439233-77439252 | Msa0997520:CDS | 40.0% | |
| GTATGTTGATCTGTTTCGAG+AGG | + | chr6_4:77439285-77439304 | Msa0997520:intron | 40.0% | |
| TGCTATTGAAATCAAGGAGG+CGG | + | chr6_4:77439342-77439361 | Msa0997520:intron | 40.0% | |
| TCTCGAAATATCTGTAGGGT+CGG | - | chr6_4:77439384-77439403 | Msa0997500:intron | 40.0% | |
| TGCTATTGAAATCAAGGAGG+CGG | + | chr6_4:77439342-77439361 | Msa0997520:intron | 40.0% | |
| !! | ATTGCTTCCTTTTGACTGTG+CGG | - | chr6_4:77439498-77439517 | Msa0997500:intron | 40.0% |
| !! | CTAGCATATCGACTTACAGT+GGG | - | chr6_4:77439564-77439583 | Msa0997500:intron | 40.0% |
| TCAAGAAAAGACATGGCAGT+TGG | + | chr6_4:77439598-77439617 | Msa0997520:CDS | 40.0% | |
| TTCCAGTGATTGATGAGTTG+TGG | + | chr6_4:77439676-77439695 | Msa0997520:CDS | 40.0% | |
| TCCAGTGATTGATGAGTTGT+GGG | + | chr6_4:77439677-77439696 | Msa0997520:CDS | 40.0% | |
| GCATCAGATTCAAACGAAAG+AGG | + | chr6_4:77439737-77439756 | Msa0997520:CDS | 40.0% | |
| TGGAGGAAAAGATTTACCAG+AGG | + | chr6_4:77437994-77438013 | Msa0997520:CDS | 40.0% | |
| GGAGGAAAAGATTTACCAGA+GGG | + | chr6_4:77437995-77438014 | Msa0997520:CDS | 40.0% | |
| GAGGAAAAGATTTACCAGAG+GGG | + | chr6_4:77437996-77438015 | Msa0997520:CDS | 40.0% | |
| !! | GAGCATACTTGATTTGGAGT+TGG | + | chr6_4:77438025-77438044 | Msa0997520:CDS | 40.0% |
| !! | CATACTTGATTTGGAGTTGG+AGG | + | chr6_4:77438028-77438047 | Msa0997520:CDS | 40.0% |
| AGAACCATTCACATCTCAGT+GGG | + | chr6_4:77438073-77438092 | Msa0997520:intron | 40.0% | |
| TTGTAAGTTCCATTACTGCG+AGG | + | chr6_4:77438125-77438144 | Msa0997520:intron | 40.0% | |
| GTAGAGATGAAAGAGGGAAT+TGG | - | chr6_4:77438373-77438392 | Msa0997500:intron | 40.0% | |
| GGAACTAGTAGAGATGAAAG+AGG | - | chr6_4:77438380-77438399 | Msa0997500:intron | 40.0% | |
| AGATGTTCAACCTTGTCGAA+TGG | - | chr6_4:77438461-77438480 | Msa0997500:intron | 40.0% | |
| !! | ATACAGAGAGAGGCATCATT+TGG | - | chr6_4:77438497-77438516 | Msa0997500:intron | 40.0% |
| GTGAAAAACAGAGTTAAGGG+AGG | + | chr6_4:77438622-77438641 | Msa0997520:intron | 40.0% | |
| ! | AACAAAAACGGGTTTAGGTG+AGG | + | chr6_4:77438682-77438701 | Msa0997520:intron | 40.0% |
| ! | ACAAAAACGGGTTTAGGTGA+GGG | + | chr6_4:77438683-77438702 | Msa0997520:intron | 40.0% |
| ACAACCTTAACCAAGAACGA+CGG | - | chr6_4:77438781-77438800 | Msa0997500:intron | 40.0% | |
| ! | AGGTTGTTTCAAAACACCGA+AGG | + | chr6_4:77438794-77438813 | Msa0997520:CDS | 40.0% |
| ! | GGTTGTTTCAAAACACCGAA+GGG | + | chr6_4:77438795-77438814 | Msa0997520:CDS | 40.0% |
| GAGAATGGAAGAATGAAGAG+AGG | + | chr6_4:77438847-77438866 | Msa0997520:CDS | 40.0% | |
| AAGAATGAAGAGAGGGAAGA+CGG | + | chr6_4:77438855-77438874 | Msa0997520:CDS | 40.0% | |
| ! | ATTTTGTGTGTTTTGTGGCC+AGG | - | chr6_4:77439061-77439080 | Msa0997500:intron | 40.0% |
| !! | GGTCGATTTTGTGTGTTTTG+TGG | - | chr6_4:77439066-77439085 | Msa0997500:intron | 40.0% |
| AAATCGACCCAGAACAAGTA+CGG | + | chr6_4:77439077-77439096 | Msa0997520:intron | 40.0% | |
| AAAAATGAGTGCCAGGTCAT+AGG | - | chr6_4:77439141-77439160 | Msa0997500:intron | 40.0% | |
| GGTAGTAAAAAATGAGTGCC+AGG | - | chr6_4:77439148-77439167 | Msa0997500:intron | 40.0% | |
| ! | GTTTGGTTTATACACACCTG+AGG | + | chr6_4:77439224-77439243 | Msa0997520:CDS | 40.0% |
| TATACACACCTGAGGTGAAA+AGG | + | chr6_4:77439232-77439251 | Msa0997520:CDS | 40.0% | |
| ATACACACCTGAGGTGAAAA+GGG | + | chr6_4:77439233-77439252 | Msa0997520:CDS | 40.0% | |
| GTATGTTGATCTGTTTCGAG+AGG | + | chr6_4:77439285-77439304 | Msa0997520:intron | 40.0% | |
| TGCTATTGAAATCAAGGAGG+CGG | + | chr6_4:77439342-77439361 | Msa0997520:intron | 40.0% | |
| TCTCGAAATATCTGTAGGGT+CGG | - | chr6_4:77439384-77439403 | Msa0997500:intron | 40.0% | |
| TGCTATTGAAATCAAGGAGG+CGG | + | chr6_4:77439342-77439361 | Msa0997520:intron | 40.0% | |
| !! | ATTGCTTCCTTTTGACTGTG+CGG | - | chr6_4:77439498-77439517 | Msa0997500:intron | 40.0% |
| !! | CTAGCATATCGACTTACAGT+GGG | - | chr6_4:77439564-77439583 | Msa0997500:intron | 40.0% |
| TCAAGAAAAGACATGGCAGT+TGG | + | chr6_4:77439598-77439617 | Msa0997520:CDS | 40.0% | |
| TTCCAGTGATTGATGAGTTG+TGG | + | chr6_4:77439676-77439695 | Msa0997520:CDS | 40.0% | |
| TCCAGTGATTGATGAGTTGT+GGG | + | chr6_4:77439677-77439696 | Msa0997520:CDS | 40.0% | |
| GCATCAGATTCAAACGAAAG+AGG | + | chr6_4:77439737-77439756 | Msa0997520:CDS | 40.0% | |
| !! | ACTTGATTTGGAGTTGGAGG+TGG | + | chr6_4:77438031-77438050 | Msa0997520:intron | 45.0% |
| !! | CTTGATTTGGAGTTGGAGGT+GGG | + | chr6_4:77438032-77438051 | Msa0997520:intron | 45.0% |
| GAGAACCATTCACATCTCAG+TGG | + | chr6_4:77438072-77438091 | Msa0997520:intron | 45.0% | |
| GAACCATTCACATCTCAGTG+GGG | + | chr6_4:77438074-77438093 | Msa0997520:intron | 45.0% | |
| AACCATTCACATCTCAGTGG+GGG | + | chr6_4:77438075-77438094 | Msa0997520:intron | 45.0% | |
| ATAGCTTTCTTGACATCCGG+AGG | + | chr6_4:77438433-77438452 | Msa0997520:intron | 45.0% | |
| TTCCGCGAGTGTTCTTCTAT+GGG | - | chr6_4:77438526-77438545 | Msa0997500:intron | 45.0% | |
| ATTCCGCGAGTGTTCTTCTA+TGG | - | chr6_4:77438527-77438546 | Msa0997500:intron | 45.0% | |
| TCAAAACACCGAAGGGAGAA+AGG | + | chr6_4:77438802-77438821 | Msa0997520:CDS | 45.0% | |
| ! | TTGGGTTTTACGAATCGGGT+CGG | - | chr6_4:77438982-77439001 | Msa0997500:intron | 45.0% |
| TTGGTATTCAGAGCTCAACC+TGG | + | chr6_4:77439184-77439203 | Msa0997520:intron | 45.0% | |
| TGGTATTCAGAGCTCAACCT+GGG | + | chr6_4:77439185-77439204 | Msa0997520:intron | 45.0% | |
| ! | GGAGAGTATGCTGATCTGTT+TGG | + | chr6_4:77439207-77439226 | Msa0997520:CDS | 45.0% |
| AGGTGAAAAGGGAAGGAGTA+GGG | + | chr6_4:77439244-77439263 | Msa0997520:CDS | 45.0% | |
| TATCTGTAGGGTCGGATGTT+GGG | - | chr6_4:77439376-77439395 | Msa0997500:intron | 45.0% | |
| ATATCTGTAGGGTCGGATGT+TGG | - | chr6_4:77439377-77439396 | Msa0997500:intron | 45.0% | |
| GACCCTACAGATATTTCGAG+AGG | + | chr6_4:77439383-77439402 | Msa0997520:intron | 45.0% | |
| TATCTGTAGGGTCGGATGTT+GGG | - | chr6_4:77439376-77439395 | Msa0997500:intron | 45.0% | |
| !! | TTGCTTCCTTTTGACTGTGC+GGG | - | chr6_4:77439497-77439516 | Msa0997500:intron | 45.0% |
| !! | GCTAGCATATCGACTTACAG+TGG | - | chr6_4:77439565-77439584 | Msa0997500:intron | 45.0% |
| AGAAAAGACATGGCAGTTGG+TGG | + | chr6_4:77439601-77439620 | Msa0997520:CDS | 45.0% | |
| CCAGTGATTGATGAGTTGTG+GGG | + | chr6_4:77439678-77439697 | Msa0997520:CDS | 45.0% | |
| !! | ACTTGATTTGGAGTTGGAGG+TGG | + | chr6_4:77438031-77438050 | Msa0997520:intron | 45.0% |
| !! | CTTGATTTGGAGTTGGAGGT+GGG | + | chr6_4:77438032-77438051 | Msa0997520:intron | 45.0% |
| GAGAACCATTCACATCTCAG+TGG | + | chr6_4:77438072-77438091 | Msa0997520:intron | 45.0% | |
| GAACCATTCACATCTCAGTG+GGG | + | chr6_4:77438074-77438093 | Msa0997520:intron | 45.0% | |
| AACCATTCACATCTCAGTGG+GGG | + | chr6_4:77438075-77438094 | Msa0997520:intron | 45.0% | |
| ATAGCTTTCTTGACATCCGG+AGG | + | chr6_4:77438433-77438452 | Msa0997520:intron | 45.0% | |
| TTCCGCGAGTGTTCTTCTAT+GGG | - | chr6_4:77438526-77438545 | Msa0997500:intron | 45.0% | |
| ATTCCGCGAGTGTTCTTCTA+TGG | - | chr6_4:77438527-77438546 | Msa0997500:intron | 45.0% | |
| TCAAAACACCGAAGGGAGAA+AGG | + | chr6_4:77438802-77438821 | Msa0997520:CDS | 45.0% | |
| ! | TTGGGTTTTACGAATCGGGT+CGG | - | chr6_4:77438982-77439001 | Msa0997500:intron | 45.0% |
| TTGGTATTCAGAGCTCAACC+TGG | + | chr6_4:77439184-77439203 | Msa0997520:intron | 45.0% | |
| TGGTATTCAGAGCTCAACCT+GGG | + | chr6_4:77439185-77439204 | Msa0997520:intron | 45.0% | |
| ! | GGAGAGTATGCTGATCTGTT+TGG | + | chr6_4:77439207-77439226 | Msa0997520:CDS | 45.0% |
| AGGTGAAAAGGGAAGGAGTA+GGG | + | chr6_4:77439244-77439263 | Msa0997520:CDS | 45.0% | |
| TATCTGTAGGGTCGGATGTT+GGG | - | chr6_4:77439376-77439395 | Msa0997500:intron | 45.0% | |
| ATATCTGTAGGGTCGGATGT+TGG | - | chr6_4:77439377-77439396 | Msa0997500:intron | 45.0% | |
| GACCCTACAGATATTTCGAG+AGG | + | chr6_4:77439383-77439402 | Msa0997520:intron | 45.0% | |
| TATCTGTAGGGTCGGATGTT+GGG | - | chr6_4:77439376-77439395 | Msa0997500:intron | 45.0% | |
| !! | TTGCTTCCTTTTGACTGTGC+GGG | - | chr6_4:77439497-77439516 | Msa0997500:intron | 45.0% |
| !! | GCTAGCATATCGACTTACAG+TGG | - | chr6_4:77439565-77439584 | Msa0997500:intron | 45.0% |
| AGAAAAGACATGGCAGTTGG+TGG | + | chr6_4:77439601-77439620 | Msa0997520:CDS | 45.0% | |
| CCAGTGATTGATGAGTTGTG+GGG | + | chr6_4:77439678-77439697 | Msa0997520:CDS | 45.0% | |
| TACCCCCACTGAGATGTGAA+TGG | - | chr6_4:77438080-77438099 | Msa0997500:intron | 50.0% | |
| ACCTTGTCGAATGGTTCCTC+CGG | - | chr6_4:77438452-77438471 | Msa0997500:intron | 50.0% | |
| AGGCATCATTTGGCTGGAAC+TGG | - | chr6_4:77438487-77438506 | Msa0997500:intron | 50.0% | |
| !! | AGAGAGAGGCATCATTTGGC+TGG | - | chr6_4:77438493-77438512 | Msa0997500:intron | 50.0% |
| CTCCCATAGAAGAACACTCG+CGG | + | chr6_4:77438521-77438540 | Msa0997520:intron | 50.0% | |
| TGAGGGAAGAGAGTGAACGA+CGG | + | chr6_4:77438700-77438719 | Msa0997520:intron | 50.0% | |
| ATGGCCGTCGTTCTTGGTTA+AGG | + | chr6_4:77438774-77438793 | Msa0997520:CDS | 50.0% | |
| AAACACCGAAGGGAGAAAGG+CGG | + | chr6_4:77438805-77438824 | Msa0997520:CDS | 50.0% | |
| GGCCGTTTCAAAGCTGAGAA+TGG | + | chr6_4:77438832-77438851 | Msa0997520:CDS | 50.0% | |
| AATGAAGAGAGGGAAGACGG+CGG | + | chr6_4:77438858-77438877 | Msa0997520:CDS | 50.0% | |
| ! | TGGGTTTTACGAATCGGGTC+GGG | - | chr6_4:77438981-77439000 | Msa0997500:intron | 50.0% |
| TCTCTACAGGAACTCGATCC+TGG | + | chr6_4:77439040-77439059 | Msa0997520:intron | 50.0% | |
| TGAGTGCCAGGTCATAGGAT+CGG | - | chr6_4:77439136-77439155 | Msa0997500:intron | 50.0% | |
| GGTATTCAGAGCTCAACCTG+GGG | + | chr6_4:77439186-77439205 | Msa0997520:intron | 50.0% | |
| ACACCTGAGGTGAAAAGGGA+AGG | + | chr6_4:77439237-77439256 | Msa0997520:CDS | 50.0% | |
| ! | ACTCCTTCCCTTTTCACCTC+AGG | - | chr6_4:77439243-77439262 | Msa0997500:intron | 50.0% |
| GAGGTGAAAAGGGAAGGAGT+AGG | + | chr6_4:77439243-77439262 | Msa0997520:CDS | 50.0% | |
| GGTGAAAAGGGAAGGAGTAG+GGG | + | chr6_4:77439245-77439264 | Msa0997520:CDS | 50.0% | |
| AAAAGGGAAGGAGTAGGGGT+TGG | + | chr6_4:77439249-77439268 | Msa0997520:CDS | 50.0% | |
| GTATCTGTAGGGTCGGATGT+TGG | - | chr6_4:77439475-77439494 | Msa0997500:intron | 50.0% | |
| TGACTGTGCGGGTATCTGTA+GGG | - | chr6_4:77439486-77439505 | Msa0997500:intron | 50.0% | |
| TTGACTGTGCGGGTATCTGT+AGG | - | chr6_4:77439487-77439506 | Msa0997500:intron | 50.0% | |
| CAGATACCCGCACAGTCAAA+AGG | + | chr6_4:77439488-77439507 | Msa0997520:CDS | 50.0% | |
| CCCCACAACTCATCAATCAC+TGG | - | chr6_4:77439681-77439700 | Msa0997500:intron | 50.0% | |
| GATTGATGAGTTGTGGGGAG+CGG | + | chr6_4:77439683-77439702 | Msa0997520:CDS | 50.0% | |
| TACCCCCACTGAGATGTGAA+TGG | - | chr6_4:77438080-77438099 | Msa0997500:intron | 50.0% | |
| ACCTTGTCGAATGGTTCCTC+CGG | - | chr6_4:77438452-77438471 | Msa0997500:intron | 50.0% | |
| AGGCATCATTTGGCTGGAAC+TGG | - | chr6_4:77438487-77438506 | Msa0997500:intron | 50.0% | |
| !! | AGAGAGAGGCATCATTTGGC+TGG | - | chr6_4:77438493-77438512 | Msa0997500:intron | 50.0% |
| CTCCCATAGAAGAACACTCG+CGG | + | chr6_4:77438521-77438540 | Msa0997520:intron | 50.0% | |
| TGAGGGAAGAGAGTGAACGA+CGG | + | chr6_4:77438700-77438719 | Msa0997520:intron | 50.0% | |
| ATGGCCGTCGTTCTTGGTTA+AGG | + | chr6_4:77438774-77438793 | Msa0997520:CDS | 50.0% | |
| AAACACCGAAGGGAGAAAGG+CGG | + | chr6_4:77438805-77438824 | Msa0997520:CDS | 50.0% | |
| GGCCGTTTCAAAGCTGAGAA+TGG | + | chr6_4:77438832-77438851 | Msa0997520:CDS | 50.0% | |
| AATGAAGAGAGGGAAGACGG+CGG | + | chr6_4:77438858-77438877 | Msa0997520:CDS | 50.0% | |
| ! | TGGGTTTTACGAATCGGGTC+GGG | - | chr6_4:77438981-77439000 | Msa0997500:intron | 50.0% |
| TCTCTACAGGAACTCGATCC+TGG | + | chr6_4:77439040-77439059 | Msa0997520:intron | 50.0% | |
| TGAGTGCCAGGTCATAGGAT+CGG | - | chr6_4:77439136-77439155 | Msa0997500:intron | 50.0% | |
| GGTATTCAGAGCTCAACCTG+GGG | + | chr6_4:77439186-77439205 | Msa0997520:intron | 50.0% | |
| ACACCTGAGGTGAAAAGGGA+AGG | + | chr6_4:77439237-77439256 | Msa0997520:CDS | 50.0% | |
| ! | ACTCCTTCCCTTTTCACCTC+AGG | - | chr6_4:77439243-77439262 | Msa0997500:intron | 50.0% |
| GAGGTGAAAAGGGAAGGAGT+AGG | + | chr6_4:77439243-77439262 | Msa0997520:CDS | 50.0% | |
| GGTGAAAAGGGAAGGAGTAG+GGG | + | chr6_4:77439245-77439264 | Msa0997520:CDS | 50.0% | |
| AAAAGGGAAGGAGTAGGGGT+TGG | + | chr6_4:77439249-77439268 | Msa0997520:CDS | 50.0% | |
| GTATCTGTAGGGTCGGATGT+TGG | - | chr6_4:77439475-77439494 | Msa0997500:intron | 50.0% | |
| TGACTGTGCGGGTATCTGTA+GGG | - | chr6_4:77439486-77439505 | Msa0997500:intron | 50.0% | |
| TTGACTGTGCGGGTATCTGT+AGG | - | chr6_4:77439487-77439506 | Msa0997500:intron | 50.0% | |
| CAGATACCCGCACAGTCAAA+AGG | + | chr6_4:77439488-77439507 | Msa0997520:CDS | 50.0% | |
| CCCCACAACTCATCAATCAC+TGG | - | chr6_4:77439681-77439700 | Msa0997500:intron | 50.0% | |
| GATTGATGAGTTGTGGGGAG+CGG | + | chr6_4:77439683-77439702 | Msa0997520:CDS | 50.0% | |
| GTATGCTCTTCACACCCCTC+TGG | - | chr6_4:77438013-77438032 | Msa0997500:intron | 55.0% | |
| ! | TTTGGAGTTGGAGGTGGGAC+TGG | + | chr6_4:77438037-77438056 | Msa0997520:intron | 55.0% |
| TCCGGAGGAACCATTCGACA+AGG | + | chr6_4:77438448-77438467 | Msa0997520:intron | 55.0% | |
| ! | TGGGAGGTGCATACAGAGAG+AGG | - | chr6_4:77438507-77438526 | Msa0997500:intron | 55.0% |
| CGCGAGTGTTCTTCTATGGG+AGG | - | chr6_4:77438523-77438542 | Msa0997500:intron | 55.0% | |
| GCGAGAACTTCGCCGGAAAA+GGG | + | chr6_4:77438722-77438741 | Msa0997520:CDS | 55.0% | |
| TGCCACTGTTTCGCGAACGA+CGG | - | chr6_4:77438755-77438774 | Msa0997500:intron | 55.0% | |
| TCGTTCGCGAAACAGTGGCA+TGG | + | chr6_4:77438755-77438774 | Msa0997520:CDS | 55.0% | |
| !!! | GACGGCGGCTGTTTTTGGTT+AGG | + | chr6_4:77438873-77438892 | Msa0997520:intron | 55.0% |
| GCGTGCTCCGTACTTGTTCT+GGG | - | chr6_4:77439087-77439106 | Msa0997500:intron | 55.0% | |
| TCCTATGTGCCACACCCTCA+CGG | - | chr6_4:77439109-77439128 | Msa0997500:intron | 55.0% | |
| GATCAGCCGATCCTATGACC+TGG | + | chr6_4:77439127-77439146 | Msa0997520:intron | 55.0% | |
| CAGATCAGCATACTCTCCCC+AGG | - | chr6_4:77439205-77439224 | Msa0997500:intron | 55.0% | |
| GCATGATCATACGGTCTGCG+TGG | - | chr6_4:77439423-77439442 | Msa0997500:intron | 55.0% | |
| TGTGCGGGTATCTGTAGGGT+CGG | - | chr6_4:77439482-77439501 | Msa0997500:intron | 55.0% | |
| GTATGCTCTTCACACCCCTC+TGG | - | chr6_4:77438013-77438032 | Msa0997500:intron | 55.0% | |
| ! | TTTGGAGTTGGAGGTGGGAC+TGG | + | chr6_4:77438037-77438056 | Msa0997520:intron | 55.0% |
| TCCGGAGGAACCATTCGACA+AGG | + | chr6_4:77438448-77438467 | Msa0997520:intron | 55.0% | |
| ! | TGGGAGGTGCATACAGAGAG+AGG | - | chr6_4:77438507-77438526 | Msa0997500:intron | 55.0% |
| CGCGAGTGTTCTTCTATGGG+AGG | - | chr6_4:77438523-77438542 | Msa0997500:intron | 55.0% | |
| GCGAGAACTTCGCCGGAAAA+GGG | + | chr6_4:77438722-77438741 | Msa0997520:CDS | 55.0% | |
| TGCCACTGTTTCGCGAACGA+CGG | - | chr6_4:77438755-77438774 | Msa0997500:intron | 55.0% | |
| TCGTTCGCGAAACAGTGGCA+TGG | + | chr6_4:77438755-77438774 | Msa0997520:CDS | 55.0% | |
| !!! | GACGGCGGCTGTTTTTGGTT+AGG | + | chr6_4:77438873-77438892 | Msa0997520:intron | 55.0% |
| GCGTGCTCCGTACTTGTTCT+GGG | - | chr6_4:77439087-77439106 | Msa0997500:intron | 55.0% | |
| TCCTATGTGCCACACCCTCA+CGG | - | chr6_4:77439109-77439128 | Msa0997500:intron | 55.0% | |
| GATCAGCCGATCCTATGACC+TGG | + | chr6_4:77439127-77439146 | Msa0997520:intron | 55.0% | |
| CAGATCAGCATACTCTCCCC+AGG | - | chr6_4:77439205-77439224 | Msa0997500:intron | 55.0% | |
| GCATGATCATACGGTCTGCG+TGG | - | chr6_4:77439423-77439442 | Msa0997500:intron | 55.0% | |
| TGTGCGGGTATCTGTAGGGT+CGG | - | chr6_4:77439482-77439501 | Msa0997500:intron | 55.0% | |
| AACGACGGCGAGAACTTCGC+CGG | + | chr6_4:77438715-77438734 | Msa0997520:CDS | 60.0% | |
| GGCGAGAACTTCGCCGGAAA+AGG | + | chr6_4:77438721-77438740 | Msa0997520:CDS | 60.0% | |
| CTTCGCCGGAAAAGGGAACC+CGG | + | chr6_4:77438729-77438748 | Msa0997520:CDS | 60.0% | |
| ACTGTTTCGCGAACGACGGC+CGG | - | chr6_4:77438751-77438770 | Msa0997500:intron | 60.0% | |
| AGTGGCATGGCCGTCGTTCT+TGG | + | chr6_4:77438768-77438787 | Msa0997520:CDS | 60.0% | |
| !! | GGGAAGACGGCGGCTGTTTT+TGG | + | chr6_4:77438868-77438887 | Msa0997520:intron | 60.0% |
| GGCGTGCTCCGTACTTGTTC+TGG | - | chr6_4:77439088-77439107 | Msa0997500:intron | 60.0% | |
| AAGTACGGAGCACGCCGTGA+GGG | + | chr6_4:77439092-77439111 | Msa0997520:intron | 60.0% | |
| AGGGAAGGAGTAGGGGTTGG+AGG | + | chr6_4:77439252-77439271 | Msa0997520:CDS | 60.0% | |
| TGATCGTACGGTCTGCGTGG+AGG | - | chr6_4:77439322-77439341 | Msa0997500:intron | 60.0% | |
| GCATGATCGTACGGTCTGCG+TGG | - | chr6_4:77439325-77439344 | Msa0997500:intron | 60.0% | |
| AACGACGGCGAGAACTTCGC+CGG | + | chr6_4:77438715-77438734 | Msa0997520:CDS | 60.0% | |
| GGCGAGAACTTCGCCGGAAA+AGG | + | chr6_4:77438721-77438740 | Msa0997520:CDS | 60.0% | |
| CTTCGCCGGAAAAGGGAACC+CGG | + | chr6_4:77438729-77438748 | Msa0997520:CDS | 60.0% | |
| ACTGTTTCGCGAACGACGGC+CGG | - | chr6_4:77438751-77438770 | Msa0997500:intron | 60.0% | |
| AGTGGCATGGCCGTCGTTCT+TGG | + | chr6_4:77438768-77438787 | Msa0997520:CDS | 60.0% | |
| !! | GGGAAGACGGCGGCTGTTTT+TGG | + | chr6_4:77438868-77438887 | Msa0997520:intron | 60.0% |
| GGCGTGCTCCGTACTTGTTC+TGG | - | chr6_4:77439088-77439107 | Msa0997500:intron | 60.0% | |
| AAGTACGGAGCACGCCGTGA+GGG | + | chr6_4:77439092-77439111 | Msa0997520:intron | 60.0% | |
| AGGGAAGGAGTAGGGGTTGG+AGG | + | chr6_4:77439252-77439271 | Msa0997520:CDS | 60.0% | |
| TGATCGTACGGTCTGCGTGG+AGG | - | chr6_4:77439322-77439341 | Msa0997500:intron | 60.0% | |
| GCATGATCGTACGGTCTGCG+TGG | - | chr6_4:77439325-77439344 | Msa0997500:intron | 60.0% | |
| ! | GACGGCCGGGTTCCCTTTTC+CGG | - | chr6_4:77438737-77438756 | Msa0997500:intron | 65.0% |
| CTGTTTCGCGAACGACGGCC+GGG | - | chr6_4:77438750-77438769 | Msa0997500:intron | 65.0% | |
| GGCCGTCGTTCGCGAAACAG+TGG | + | chr6_4:77438750-77438769 | Msa0997520:CDS | 65.0% | |
| CACCGAAGGGAGAAAGGCGG+CGG | + | chr6_4:77438808-77438827 | Msa0997520:CDS | 65.0% | |
| CAAGTACGGAGCACGCCGTG+AGG | + | chr6_4:77439091-77439110 | Msa0997520:intron | 65.0% | |
| ! | GCCGTGAGGGTGTGGCACAT+AGG | + | chr6_4:77439105-77439124 | Msa0997520:intron | 65.0% |
| ! | GACGGCCGGGTTCCCTTTTC+CGG | - | chr6_4:77438737-77438756 | Msa0997500:intron | 65.0% |
| CTGTTTCGCGAACGACGGCC+GGG | - | chr6_4:77438750-77438769 | Msa0997500:intron | 65.0% | |
| GGCCGTCGTTCGCGAAACAG+TGG | + | chr6_4:77438750-77438769 | Msa0997520:CDS | 65.0% | |
| CACCGAAGGGAGAAAGGCGG+CGG | + | chr6_4:77438808-77438827 | Msa0997520:CDS | 65.0% | |
| CAAGTACGGAGCACGCCGTG+AGG | + | chr6_4:77439091-77439110 | Msa0997520:intron | 65.0% | |
| ! | GCCGTGAGGGTGTGGCACAT+AGG | + | chr6_4:77439105-77439124 | Msa0997520:intron | 65.0% |
| CGCCGCCGCCTTTCTCCCTT+CGG | - | chr6_4:77438813-77438832 | Msa0997500:intron | 70.0% | |
| CGAAGGGAGAAAGGCGGCGG+CGG | + | chr6_4:77438811-77438830 | Msa0997520:CDS | 70.0% | |
| CGCCGCCGCCTTTCTCCCTT+CGG | - | chr6_4:77438813-77438832 | Msa0997500:intron | 70.0% | |
| CGAAGGGAGAAAGGCGGCGG+CGG | + | chr6_4:77438811-77438830 | Msa0997520:CDS | 70.0% | |
| CGGAGCACGCCGTGAGGGTG+TGG | + | chr6_4:77439097-77439116 | Msa0997520:intron | 75.0% | |
| CGGAGCACGCCGTGAGGGTG+TGG | + | chr6_4:77439097-77439116 | Msa0997520:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 77437993 | 77439809 | 77437993 | ID=Msa0997520;Name=Msa0997520 |
| chr6_4 | mRNA | 77437993 | 77439809 | 77437993 | ID=Msa0997520-mRNA-1;Parent=Msa0997520;Name=Msa0997520-mRNA-1;_AED=0.48;_eAED=0.72;_QI=0|0|0|0.6|1|1|5|0|260 |
| chr6_4 | exon | 77437993 | 77438049 | 77437993 | ID=Msa0997520-mRNA-1:exon:14534;Parent=Msa0997520-mRNA-1 |
| chr6_4 | exon | 77438709 | 77438882 | 77438709 | ID=Msa0997520-mRNA-1:exon:14535;Parent=Msa0997520-mRNA-1 |
| chr6_4 | exon | 77439049 | 77439093 | 77439049 | ID=Msa0997520-mRNA-1:exon:14536;Parent=Msa0997520-mRNA-1 |
| chr6_4 | exon | 77439195 | 77439284 | 77439195 | ID=Msa0997520-mRNA-1:exon:14537;Parent=Msa0997520-mRNA-1 |
| chr6_4 | exon | 77439393 | 77439809 | 77439393 | ID=Msa0997520-mRNA-1:exon:14538;Parent=Msa0997520-mRNA-1 |
| chr6_4 | CDS | 77437993 | 77438049 | 77437993 | ID=Msa0997520-mRNA-1:cds;Parent=Msa0997520-mRNA-1 |
| chr6_4 | CDS | 77438709 | 77438882 | 77438709 | ID=Msa0997520-mRNA-1:cds;Parent=Msa0997520-mRNA-1 |
| chr6_4 | CDS | 77439049 | 77439093 | 77439049 | ID=Msa0997520-mRNA-1:cds;Parent=Msa0997520-mRNA-1 |
| chr6_4 | CDS | 77439195 | 77439284 | 77439195 | ID=Msa0997520-mRNA-1:cds;Parent=Msa0997520-mRNA-1 |
| chr6_4 | CDS | 77439393 | 77439809 | 77439393 | ID=Msa0997520-mRNA-1:cds;Parent=Msa0997520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
