Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0897890 | PNX89585.1 | 80.687 | 233 | 37 | 3 | 55 | 281 | 3 | 233 | 5.82e-130 | 379 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0897890 | sp|F4HQ23|LRL27_ARATH | 30.380 | 237 | 142 | 9 | 44 | 267 | 240 | 466 | 5.15e-16 | 82.0 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0897890 | A0A2K3MFL6 | 80.687 | 233 | 37 | 3 | 55 | 281 | 3 | 233 | 2.78e-130 | 379 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0897860 | Msa0897890 | 0.863846 | 1.859763e-64 | -8.615850e-47 |
Msa0897890 | Msa0998050 | 0.833802 | 4.324719e-56 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0897890 | MtrunA17_Chr6g0483851 | 62.595 | 262 | 91 | 2 | 15 | 272 | 5 | 263 | 3.24e-107 | 327 |
Msa0897890 | MtrunA17_Chr6g0483791 | 63.985 | 261 | 87 | 2 | 16 | 272 | 1 | 258 | 8.33e-107 | 325 |
Msa0897890 | MtrunA17_Chr6g0483921 | 59.387 | 261 | 100 | 2 | 16 | 272 | 1 | 259 | 6.26e-103 | 305 |
Msa0897890 | MtrunA17_Chr7g0251131 | 27.381 | 252 | 158 | 7 | 22 | 267 | 1 | 233 | 2.46e-20 | 88.6 |
Msa0897890 | MtrunA17_Chr8g0391231 | 28.269 | 283 | 172 | 13 | 25 | 294 | 5 | 269 | 2.92e-20 | 91.3 |
Msa0897890 | MtrunA17_Chr7g0251011 | 24.910 | 277 | 183 | 7 | 28 | 298 | 10 | 267 | 1.26e-19 | 87.0 |
Msa0897890 | MtrunA17_Chr8g0376061 | 30.045 | 223 | 132 | 10 | 58 | 271 | 34 | 241 | 3.16e-17 | 82.4 |
Msa0897890 | MtrunA17_Chr6g0483901 | 28.571 | 210 | 122 | 8 | 60 | 256 | 47 | 241 | 3.30e-14 | 71.2 |
Msa0897890 | MtrunA17_Chr6g0483911 | 26.357 | 258 | 152 | 11 | 37 | 275 | 8 | 246 | 4.53e-13 | 68.6 |
Msa0897890 | MtrunA17_Chr6g0483801 | 25.541 | 231 | 140 | 9 | 56 | 273 | 37 | 248 | 2.39e-12 | 66.2 |
Msa0897890 | MtrunA17_Chr7g0251061 | 29.130 | 230 | 126 | 13 | 60 | 273 | 47 | 255 | 1.32e-11 | 65.5 |
Msa0897890 | MtrunA17_Chr6g0484051 | 37.398 | 123 | 62 | 4 | 60 | 181 | 49 | 157 | 2.11e-11 | 64.7 |
Msa0897890 | MtrunA17_Chr7g0251121 | 27.481 | 262 | 156 | 12 | 20 | 267 | 3 | 244 | 2.84e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0897890 | AT1G66930.2 | 30.380 | 237 | 142 | 9 | 44 | 267 | 240 | 466 | 5.23e-17 | 82.0 |
Msa0897890 | AT1G66930.3 | 30.085 | 236 | 142 | 9 | 44 | 266 | 59 | 284 | 1.13e-16 | 80.9 |
Msa0897890 | AT1G66930.1 | 30.085 | 236 | 142 | 9 | 44 | 266 | 59 | 284 | 1.14e-16 | 80.9 |
Msa0897890 | AT1G67000.1 | 31.982 | 222 | 128 | 10 | 58 | 267 | 256 | 466 | 2.54e-15 | 77.0 |
Msa0897890 | AT5G38260.1 | 27.376 | 263 | 146 | 12 | 24 | 267 | 11 | 247 | 2.72e-15 | 77.0 |
Msa0897890 | AT1G18390.2 | 26.991 | 226 | 139 | 8 | 56 | 271 | 33 | 242 | 4.65e-15 | 76.3 |
Msa0897890 | AT1G66880.3 | 29.907 | 214 | 116 | 9 | 57 | 261 | 33 | 221 | 2.78e-13 | 70.9 |
Msa0897890 | AT1G66880.2 | 29.907 | 214 | 116 | 9 | 57 | 261 | 33 | 221 | 4.04e-13 | 70.5 |
Msa0897890 | AT1G66880.2 | 25.100 | 251 | 146 | 10 | 36 | 267 | 239 | 466 | 9.81e-12 | 66.2 |
Msa0897890 | AT1G66880.1 | 29.524 | 210 | 115 | 8 | 60 | 261 | 416 | 600 | 5.03e-13 | 70.1 |
Msa0897890 | AT1G66880.1 | 25.991 | 227 | 133 | 9 | 60 | 267 | 635 | 845 | 8.30e-12 | 66.6 |
Msa0897890 | AT1G66880.1 | 26.961 | 204 | 120 | 8 | 62 | 259 | 26 | 206 | 3.98e-11 | 64.3 |
Msa0897890 | AT1G66910.2 | 25.751 | 233 | 138 | 8 | 57 | 267 | 38 | 257 | 1.47e-11 | 65.5 |
Msa0897890 | AT1G66910.1 | 25.751 | 233 | 138 | 8 | 57 | 267 | 38 | 257 | 1.49e-11 | 65.5 |
Msa0897890 | AT5G38210.3 | 25.112 | 223 | 141 | 8 | 57 | 267 | 20 | 228 | 1.87e-11 | 65.1 |
Msa0897890 | AT5G38210.2 | 23.077 | 221 | 148 | 6 | 57 | 267 | 38 | 246 | 1.99e-11 | 65.1 |
Find 65 sgRNAs with CRISPR-Local
Find 580 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGATTGTAAGGGACGATTTA+TGG | 0.170227 | 6_1:-90476659 | Msa0897890:CDS |
GCGATATTAGCTACCCATTC+TGG | 0.203275 | 6_1:-90476815 | Msa0897890:CDS |
ATTGGTTGATTTCAATGTTA+TGG | 0.260052 | 6_1:-90476409 | Msa0897890:CDS |
TATGAAGGATGTGAAACTTT+TGG | 0.265817 | 6_1:+90476706 | None:intergenic |
CCTAGTTTCAAGTGACAAAT+TGG | 0.292169 | 6_1:-90476427 | Msa0897890:CDS |
ACCACATCTTGTGAACCTTT+TGG | 0.312693 | 6_1:-90476852 | Msa0897890:CDS |
GCGAAAATGAAAATCATTCT+AGG | 0.313685 | 6_1:-90475484 | Msa0897890:CDS |
TTCAGTTATGTGTCTCTTGC+CGG | 0.319841 | 6_1:-90476223 | Msa0897890:CDS |
AACGTAGAGGAGTTTGAGTT+TGG | 0.343075 | 6_1:+90476510 | None:intergenic |
TAGGTGAAGGATTTGAGGTT+GGG | 0.354930 | 6_1:-90476323 | Msa0897890:CDS |
TTTAGGAAATATATGTAAAA+GGG | 0.355653 | 6_1:-90477038 | Msa0897890:intron |
TCGCTTTGGAGCGTTCTTCT+CGG | 0.377807 | 6_1:-90476989 | Msa0897890:CDS |
CAAGTGTATACTATTCTTGA+TGG | 0.382085 | 6_1:+90479561 | None:intergenic |
AAGAATAGTATCACCTTTCC+TGG | 0.384015 | 6_1:-90476381 | Msa0897890:CDS |
TGAGGTTGGGTGGAGTGGTG+TGG | 0.400616 | 6_1:-90476310 | Msa0897890:CDS |
GAGGTTGGGTGGAGTGGTGT+GGG | 0.406803 | 6_1:-90476309 | Msa0897890:CDS |
GAGACATTTGATTTATATGA+AGG | 0.409674 | 6_1:+90476691 | None:intergenic |
TGACAATCAAGCTTGAAGTT+TGG | 0.421038 | 6_1:+90476759 | None:intergenic |
GTCAATGAATTCTTCAAGCC+AGG | 0.429363 | 6_1:+90476363 | None:intergenic |
TGAAGTGATTTCTTGCCTCA+TGG | 0.433114 | 6_1:-90476472 | Msa0897890:CDS |
GGATTTGAGGTTGGGTGGAG+TGG | 0.435864 | 6_1:-90476315 | Msa0897890:CDS |
AAAGAAAACGAAGGTAGAAA+AGG | 0.443625 | 6_1:+90476954 | None:intergenic |
CCAATTTGTCACTTGAAACT+AGG | 0.446574 | 6_1:+90476427 | None:intergenic |
TTTACATCAATATATTGCTT+CGG | 0.447673 | 6_1:+90476606 | None:intergenic |
ACGTCTTAGTTGCCATCAAA+AGG | 0.460704 | 6_1:-90479488 | Msa0897890:five_prime_UTR |
TTTGGATGACCGCAATAACT+TGG | 0.483437 | 6_1:+90476777 | None:intergenic |
GACTTAAGAAGAAGAGTGGA+AGG | 0.485625 | 6_1:+90476910 | None:intergenic |
CTGAAATTTCCACATCCAAA+AGG | 0.487786 | 6_1:+90476837 | None:intergenic |
TTAGGTGAAGGATTTGAGGT+TGG | 0.490349 | 6_1:-90476324 | Msa0897890:CDS |
AGAAACTAGGAACATCGCTT+TGG | 0.491158 | 6_1:-90477003 | Msa0897890:CDS |
GATGACCGCAATAACTTGGT+TGG | 0.500075 | 6_1:+90476781 | None:intergenic |
GTGAAGGATTTGAGGTTGGG+TGG | 0.502660 | 6_1:-90476320 | Msa0897890:CDS |
AATTGACTTAAGAAGAAGAG+TGG | 0.504168 | 6_1:+90476906 | None:intergenic |
TGTGGTGGTTGCATGAAATC+TGG | 0.506044 | 6_1:-90476276 | Msa0897890:CDS |
GATGGAGTAACATCATCAAA+TGG | 0.527046 | 6_1:-90476186 | Msa0897890:intron |
CCATCTGCAATGGATTTCTC+CGG | 0.533130 | 6_1:+90476204 | None:intergenic |
GCACAGAGAAGCATTTGAGC+AGG | 0.540476 | 6_1:-90475510 | Msa0897890:CDS |
TTAGGAAATATATGTAAAAG+GGG | 0.545725 | 6_1:-90477037 | Msa0897890:intron |
GGGAAATGCTAGAAGAAACT+AGG | 0.548819 | 6_1:-90477016 | Msa0897890:exon |
CCGGAGAAATCCATTGCAGA+TGG | 0.552731 | 6_1:-90476204 | Msa0897890:CDS |
GGATGTTAAGACTCCAGAAT+GGG | 0.565498 | 6_1:+90476802 | None:intergenic |
GTAGGAATCTGTTAGAACAT+TGG | 0.566351 | 6_1:+90475553 | None:intergenic |
AACGAAGGTAGAAAAGGAAG+CGG | 0.568895 | 6_1:+90476960 | None:intergenic |
TCCAAAAGGTTCACAAGATG+TGG | 0.579964 | 6_1:+90476851 | None:intergenic |
TGATGTTACTCCATCTGCAA+TGG | 0.583421 | 6_1:+90476194 | None:intergenic |
TTCAAGCTTGATTGTCAACA+TGG | 0.587950 | 6_1:-90476753 | Msa0897890:CDS |
GTGATTTCTTGCCTCATGGA+GGG | 0.587986 | 6_1:-90476468 | Msa0897890:CDS |
TAGGAAATATATGTAAAAGG+GGG | 0.593700 | 6_1:-90477036 | Msa0897890:five_prime_UTR |
TGGATGTTAAGACTCCAGAA+TGG | 0.599363 | 6_1:+90476801 | None:intergenic |
TGAATTCTTCAAGCCAGGAA+AGG | 0.602825 | 6_1:+90476368 | None:intergenic |
AACATCCAACCAAGTTATTG+CGG | 0.605269 | 6_1:-90476786 | Msa0897890:CDS |
CAATAGTAGAAACATCATGT+AGG | 0.608568 | 6_1:+90475535 | None:intergenic |
AAAAGGTTCACAAGATGTGG+TGG | 0.620771 | 6_1:+90476854 | None:intergenic |
ATCAAAAGGCTTAATTAACA+AGG | 0.630960 | 6_1:-90479474 | Msa0897890:intron |
GAATTCATTGACAAATGACT+CGG | 0.637714 | 6_1:-90476352 | Msa0897890:CDS |
AGTGATTTCTTGCCTCATGG+AGG | 0.643094 | 6_1:-90476469 | Msa0897890:CDS |
ATGAAATCTGGTAGGAAATG+CGG | 0.644240 | 6_1:-90476264 | Msa0897890:CDS |
GAAGGTAGAAAAGGAAGCGG+AGG | 0.652700 | 6_1:+90476963 | None:intergenic |
TATACTCTATTGTACGAGTG+TGG | 0.664109 | 6_1:-90476540 | Msa0897890:CDS |
AACTTCAGAACTCAACGTAG+AGG | 0.677319 | 6_1:+90476497 | None:intergenic |
GTGGTTGCATGAAATCTGGT+AGG | 0.685356 | 6_1:-90476272 | Msa0897890:CDS |
GGTGGACACAGCATTAGTAG+TGG | 0.686937 | 6_1:+90476872 | None:intergenic |
GGTGTGGGAGAAGAAATATG+TGG | 0.752804 | 6_1:-90476294 | Msa0897890:CDS |
GTGGGAGAAGAAATATGTGG+TGG | 0.753774 | 6_1:-90476291 | Msa0897890:CDS |
TTGATGATGAAAGAAAACGA+AGG | 0.776756 | 6_1:+90476945 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTAAAATATGCTTTAAA+AGG | - | chr6_1:90476970-90476989 | Msa0897890:CDS | 10.0% |
!!! | TTTTAAAATATGCTTTAAAA+GGG | - | chr6_1:90476971-90476990 | Msa0897890:CDS | 10.0% |
!!! | ATAAATATTTTTATATAGAC+CGG | + | chr6_1:90477147-90477166 | None:intergenic | 10.0% |
!! | AAAAAAAAAAAAAAGGAAAA+CGG | - | chr6_1:90477565-90477584 | Msa0897890:intron | 10.0% |
!!! | TTTTGTTGAAATAAAAAATT+GGG | + | chr6_1:90477752-90477771 | None:intergenic | 10.0% |
!!! | TTTTTGTTGAAATAAAAAAT+TGG | + | chr6_1:90477753-90477772 | None:intergenic | 10.0% |
!!! | TTTTTAAAATATGCTTTAAA+AGG | - | chr6_1:90476970-90476989 | Msa0897890:CDS | 10.0% |
!!! | TTTTAAAATATGCTTTAAAA+GGG | - | chr6_1:90476971-90476990 | Msa0897890:CDS | 10.0% |
!!! | ATAAATATTTTTATATAGAC+CGG | + | chr6_1:90477147-90477166 | None:intergenic | 10.0% |
!! | AAAAAAAAAAAAAAGGAAAA+CGG | - | chr6_1:90477565-90477584 | Msa0897890:intron | 10.0% |
!!! | TTTTGTTGAAATAAAAAATT+GGG | + | chr6_1:90477752-90477771 | None:intergenic | 10.0% |
!!! | TTTTTGTTGAAATAAAAAAT+TGG | + | chr6_1:90477753-90477772 | None:intergenic | 10.0% |
!!! | TTTAAAGCTTTTTTATATCT+TGG | - | chr6_1:90475657-90475676 | Msa0897890:intron | 15.0% |
!!! | TAAATATTTTTATATAGACC+GGG | + | chr6_1:90477146-90477165 | None:intergenic | 15.0% |
!!! | TTCATTCATAATGTAATTTT+GGG | + | chr6_1:90477172-90477191 | None:intergenic | 15.0% |
!!! | TTTCATTCATAATGTAATTT+TGG | + | chr6_1:90477173-90477192 | None:intergenic | 15.0% |
!! | AATATTAGAATTTATTTGTG+AGG | + | chr6_1:90477371-90477390 | None:intergenic | 15.0% |
!!! | TAAGTCTATTCTTTTTTTTT+TGG | + | chr6_1:90477489-90477508 | None:intergenic | 15.0% |
!! | CAAGTCAAAAAAAAAAAAAA+AGG | - | chr6_1:90477558-90477577 | Msa0897890:intron | 15.0% |
!! | AAAAAAAAAAAAAGGAAAAC+GGG | - | chr6_1:90477566-90477585 | Msa0897890:intron | 15.0% |
!! | ATTATGAAGAAAATAACAAA+TGG | + | chr6_1:90477895-90477914 | None:intergenic | 15.0% |
!!! | CTTGTATTTTAACTTTAAAT+AGG | - | chr6_1:90477916-90477935 | Msa0897890:intron | 15.0% |
!!! | TTTTAGGAAATATATGTAAA+AGG | - | chr6_1:90478005-90478024 | Msa0897890:intron | 15.0% |
!! | TTTAGGAAATATATGTAAAA+GGG | - | chr6_1:90478006-90478025 | Msa0897890:intron | 15.0% |
!!! | TTTAAAGCTTTTTTATATCT+TGG | - | chr6_1:90475657-90475676 | Msa0897890:intron | 15.0% |
!!! | TAAATATTTTTATATAGACC+GGG | + | chr6_1:90477146-90477165 | None:intergenic | 15.0% |
!!! | TTCATTCATAATGTAATTTT+GGG | + | chr6_1:90477172-90477191 | None:intergenic | 15.0% |
!!! | TTTCATTCATAATGTAATTT+TGG | + | chr6_1:90477173-90477192 | None:intergenic | 15.0% |
!! | AATATTAGAATTTATTTGTG+AGG | + | chr6_1:90477371-90477390 | None:intergenic | 15.0% |
!!! | TAAGTCTATTCTTTTTTTTT+TGG | + | chr6_1:90477489-90477508 | None:intergenic | 15.0% |
!! | CAAGTCAAAAAAAAAAAAAA+AGG | - | chr6_1:90477558-90477577 | Msa0897890:intron | 15.0% |
!! | AAAAAAAAAAAAAGGAAAAC+GGG | - | chr6_1:90477566-90477585 | Msa0897890:intron | 15.0% |
!! | ATTATGAAGAAAATAACAAA+TGG | + | chr6_1:90477895-90477914 | None:intergenic | 15.0% |
!!! | CTTGTATTTTAACTTTAAAT+AGG | - | chr6_1:90477916-90477935 | Msa0897890:intron | 15.0% |
!!! | TTTTAGGAAATATATGTAAA+AGG | - | chr6_1:90478005-90478024 | Msa0897890:intron | 15.0% |
!! | TTTAGGAAATATATGTAAAA+GGG | - | chr6_1:90478006-90478025 | Msa0897890:intron | 15.0% |
!!! | TTGCAACTAGTTTATTTTTA+AGG | - | chr6_1:90475810-90475829 | Msa0897890:intron | 20.0% |
!!! | AACTAGTTTATTTTTAAGGT+GGG | - | chr6_1:90475814-90475833 | Msa0897890:intron | 20.0% |
!! | ACTAAGTGTATCTATTAATT+TGG | - | chr6_1:90475860-90475879 | Msa0897890:intron | 20.0% |
!! | CTAAGTGTATCTATTAATTT+GGG | - | chr6_1:90475861-90475880 | Msa0897890:intron | 20.0% |
!!! | TAAGTGTATCTATTAATTTG+GGG | - | chr6_1:90475862-90475881 | Msa0897890:intron | 20.0% |
!!! | ATTGTTGATAAATAGATCAT+AGG | + | chr6_1:90476000-90476019 | None:intergenic | 20.0% |
!!! | AAGTAGATTTTTCTTTAACT+AGG | + | chr6_1:90476216-90476235 | None:intergenic | 20.0% |
!! | TTGTAAGTATGTAAAATTCT+AGG | - | chr6_1:90476235-90476254 | Msa0897890:CDS | 20.0% |
!! | TGCATATAACTTTAAACTAA+GGG | + | chr6_1:90476824-90476843 | None:intergenic | 20.0% |
!! | TTAGGAAATATATGTAAAAG+GGG | - | chr6_1:90478007-90478026 | Msa0897890:intron | 20.0% |
!! | TTTACATCAATATATTGCTT+CGG | + | chr6_1:90478441-90478460 | None:intergenic | 20.0% |
!!! | ACATATTCATAAGATGTTTT+AGG | - | chr6_1:90478971-90478990 | Msa0897890:intron | 20.0% |
!!! | TATTTTAAGAATGAGGATAA+AGG | + | chr6_1:90479143-90479162 | None:intergenic | 20.0% |
!!! | GAAATCATATTTTAAGAATG+AGG | + | chr6_1:90479150-90479169 | None:intergenic | 20.0% |
!!! | TTGCAACTAGTTTATTTTTA+AGG | - | chr6_1:90475810-90475829 | Msa0897890:intron | 20.0% |
!!! | AACTAGTTTATTTTTAAGGT+GGG | - | chr6_1:90475814-90475833 | Msa0897890:intron | 20.0% |
!! | ACTAAGTGTATCTATTAATT+TGG | - | chr6_1:90475860-90475879 | Msa0897890:intron | 20.0% |
!! | CTAAGTGTATCTATTAATTT+GGG | - | chr6_1:90475861-90475880 | Msa0897890:intron | 20.0% |
!!! | TAAGTGTATCTATTAATTTG+GGG | - | chr6_1:90475862-90475881 | Msa0897890:intron | 20.0% |
!!! | ATTGTTGATAAATAGATCAT+AGG | + | chr6_1:90476000-90476019 | None:intergenic | 20.0% |
!!! | AAGTAGATTTTTCTTTAACT+AGG | + | chr6_1:90476216-90476235 | None:intergenic | 20.0% |
!! | TTGTAAGTATGTAAAATTCT+AGG | - | chr6_1:90476235-90476254 | Msa0897890:CDS | 20.0% |
!! | TGCATATAACTTTAAACTAA+GGG | + | chr6_1:90476824-90476843 | None:intergenic | 20.0% |
!! | TTAGGAAATATATGTAAAAG+GGG | - | chr6_1:90478007-90478026 | Msa0897890:intron | 20.0% |
!! | TTTACATCAATATATTGCTT+CGG | + | chr6_1:90478441-90478460 | None:intergenic | 20.0% |
!!! | ACATATTCATAAGATGTTTT+AGG | - | chr6_1:90478971-90478990 | Msa0897890:intron | 20.0% |
!!! | TATTTTAAGAATGAGGATAA+AGG | + | chr6_1:90479143-90479162 | None:intergenic | 20.0% |
!!! | GAAATCATATTTTAAGAATG+AGG | + | chr6_1:90479150-90479169 | None:intergenic | 20.0% |
!! | TTGTTAATTAAGCCTTTTGA+TGG | + | chr6_1:90475571-90475590 | None:intergenic | 25.0% |
! | ATCAAAAGGCTTAATTAACA+AGG | - | chr6_1:90475570-90475589 | Msa0897890:intron | 25.0% |
!! | TGAGAAAGTGTATATCATAT+AGG | + | chr6_1:90475772-90475791 | None:intergenic | 25.0% |
! | TATATGATATACACTTTCTC+AGG | - | chr6_1:90475771-90475790 | Msa0897890:intron | 25.0% |
!!! | CAACTAGTTTATTTTTAAGG+TGG | - | chr6_1:90475813-90475832 | Msa0897890:intron | 25.0% |
!!! | AATTATTTTGTAGTCCAACA+AGG | - | chr6_1:90475890-90475909 | Msa0897890:intron | 25.0% |
!!! | ATTATTTTGTAGTCCAACAA+GGG | - | chr6_1:90475891-90475910 | Msa0897890:intron | 25.0% |
! | AAAAAACTATTTACACAGCA+GGG | + | chr6_1:90476080-90476099 | None:intergenic | 25.0% |
! | TAAAAAACTATTTACACAGC+AGG | + | chr6_1:90476081-90476100 | None:intergenic | 25.0% |
! | AGTGGAATGATATTATATAG+AGG | + | chr6_1:90476110-90476129 | None:intergenic | 25.0% |
! | AAATAATTACCGTATACATG+AGG | - | chr6_1:90476527-90476546 | Msa0897890:CDS | 25.0% |
!!! | TTTAATTTTCCTCTTGCTTT+TGG | + | chr6_1:90476568-90476587 | None:intergenic | 25.0% |
!!! | TACTGGGTACAATTTTTTTT+TGG | - | chr6_1:90476665-90476684 | Msa0897890:CDS | 25.0% |
! | ATATAACTTTAAACTAAGGG+TGG | + | chr6_1:90476821-90476840 | None:intergenic | 25.0% |
! | GTGCATATAACTTTAAACTA+AGG | + | chr6_1:90476825-90476844 | None:intergenic | 25.0% |
!!! | ATAGATTTTTTTTCCTACCT+TGG | - | chr6_1:90476873-90476892 | Msa0897890:CDS | 25.0% |
!!! | ATTTTTTGTAGAAATAGCCA+AGG | + | chr6_1:90476893-90476912 | None:intergenic | 25.0% |
! | AAGAATTAGAAACAACATAC+TGG | - | chr6_1:90476937-90476956 | Msa0897890:CDS | 25.0% |
!!! | AGGGTTTTAAAACATTGATT+GGG | + | chr6_1:90477046-90477065 | None:intergenic | 25.0% |
! | TGAATGAGCTAATTTGAATT+TGG | + | chr6_1:90477323-90477342 | None:intergenic | 25.0% |
!! | TAGTATGTTCTAAACATTGT+TGG | - | chr6_1:90477411-90477430 | Msa0897890:intron | 25.0% |
! | AAGAATCTTGCATATATGAA+TGG | + | chr6_1:90477831-90477850 | None:intergenic | 25.0% |
! | TAGGAAATATATGTAAAAGG+GGG | - | chr6_1:90478008-90478027 | Msa0897890:intron | 25.0% |
!! | GAGACATTTGATTTATATGA+AGG | + | chr6_1:90478356-90478375 | None:intergenic | 25.0% |
!! | ATTGGTTGATTTCAATGTTA+TGG | - | chr6_1:90478635-90478654 | Msa0897890:intron | 25.0% |
! | GAAGAATCTAATAAAATGTC+AGG | + | chr6_1:90478897-90478916 | None:intergenic | 25.0% |
! | GAATATGTGATAAACTAGTT+TGG | + | chr6_1:90478959-90478978 | None:intergenic | 25.0% |
!!! | TAAGATGTTTTAGGATTTTG+TGG | - | chr6_1:90478980-90478999 | Msa0897890:intron | 25.0% |
!!! | GATTTTGTGGATTGATTTAA+TGG | - | chr6_1:90478993-90479012 | Msa0897890:intron | 25.0% |
!! | TTGTTAATTAAGCCTTTTGA+TGG | + | chr6_1:90475571-90475590 | None:intergenic | 25.0% |
! | ATCAAAAGGCTTAATTAACA+AGG | - | chr6_1:90475570-90475589 | Msa0897890:intron | 25.0% |
!! | TGAGAAAGTGTATATCATAT+AGG | + | chr6_1:90475772-90475791 | None:intergenic | 25.0% |
! | TATATGATATACACTTTCTC+AGG | - | chr6_1:90475771-90475790 | Msa0897890:intron | 25.0% |
!!! | CAACTAGTTTATTTTTAAGG+TGG | - | chr6_1:90475813-90475832 | Msa0897890:intron | 25.0% |
!!! | AATTATTTTGTAGTCCAACA+AGG | - | chr6_1:90475890-90475909 | Msa0897890:intron | 25.0% |
!!! | ATTATTTTGTAGTCCAACAA+GGG | - | chr6_1:90475891-90475910 | Msa0897890:intron | 25.0% |
! | AAAAAACTATTTACACAGCA+GGG | + | chr6_1:90476080-90476099 | None:intergenic | 25.0% |
! | TAAAAAACTATTTACACAGC+AGG | + | chr6_1:90476081-90476100 | None:intergenic | 25.0% |
! | AGTGGAATGATATTATATAG+AGG | + | chr6_1:90476110-90476129 | None:intergenic | 25.0% |
! | AAATAATTACCGTATACATG+AGG | - | chr6_1:90476527-90476546 | Msa0897890:CDS | 25.0% |
!!! | TTTAATTTTCCTCTTGCTTT+TGG | + | chr6_1:90476568-90476587 | None:intergenic | 25.0% |
!!! | TACTGGGTACAATTTTTTTT+TGG | - | chr6_1:90476665-90476684 | Msa0897890:CDS | 25.0% |
! | ATATAACTTTAAACTAAGGG+TGG | + | chr6_1:90476821-90476840 | None:intergenic | 25.0% |
! | GTGCATATAACTTTAAACTA+AGG | + | chr6_1:90476825-90476844 | None:intergenic | 25.0% |
!!! | ATAGATTTTTTTTCCTACCT+TGG | - | chr6_1:90476873-90476892 | Msa0897890:CDS | 25.0% |
!!! | ATTTTTTGTAGAAATAGCCA+AGG | + | chr6_1:90476893-90476912 | None:intergenic | 25.0% |
! | AAGAATTAGAAACAACATAC+TGG | - | chr6_1:90476937-90476956 | Msa0897890:CDS | 25.0% |
!!! | AGGGTTTTAAAACATTGATT+GGG | + | chr6_1:90477046-90477065 | None:intergenic | 25.0% |
! | TGAATGAGCTAATTTGAATT+TGG | + | chr6_1:90477323-90477342 | None:intergenic | 25.0% |
!! | TAGTATGTTCTAAACATTGT+TGG | - | chr6_1:90477411-90477430 | Msa0897890:intron | 25.0% |
! | AAGAATCTTGCATATATGAA+TGG | + | chr6_1:90477831-90477850 | None:intergenic | 25.0% |
! | TAGGAAATATATGTAAAAGG+GGG | - | chr6_1:90478008-90478027 | Msa0897890:intron | 25.0% |
!! | GAGACATTTGATTTATATGA+AGG | + | chr6_1:90478356-90478375 | None:intergenic | 25.0% |
!! | ATTGGTTGATTTCAATGTTA+TGG | - | chr6_1:90478635-90478654 | Msa0897890:intron | 25.0% |
! | GAAGAATCTAATAAAATGTC+AGG | + | chr6_1:90478897-90478916 | None:intergenic | 25.0% |
! | GAATATGTGATAAACTAGTT+TGG | + | chr6_1:90478959-90478978 | None:intergenic | 25.0% |
!!! | TAAGATGTTTTAGGATTTTG+TGG | - | chr6_1:90478980-90478999 | Msa0897890:intron | 25.0% |
!!! | GATTTTGTGGATTGATTTAA+TGG | - | chr6_1:90478993-90479012 | Msa0897890:intron | 25.0% |
CAAGTGTATACTATTCTTGA+TGG | + | chr6_1:90475486-90475505 | None:intergenic | 30.0% | |
! | CAAGAGAAACTTGAGTTTTA+CGG | - | chr6_1:90475517-90475536 | Msa0897890:CDS | 30.0% |
!!! | TAGTTTATTTTTAAGGTGGG+CGG | - | chr6_1:90475817-90475836 | Msa0897890:intron | 30.0% |
!! | TTATTTTGTAGTCCAACAAG+GGG | - | chr6_1:90475892-90475911 | Msa0897890:intron | 30.0% |
! | CGGTAATTATTTTCACCTAT+GGG | + | chr6_1:90476519-90476538 | None:intergenic | 30.0% |
! | ACGGTAATTATTTTCACCTA+TGG | + | chr6_1:90476520-90476539 | None:intergenic | 30.0% |
TATACTATCCTGCAATAAAG+GGG | + | chr6_1:90476629-90476648 | None:intergenic | 30.0% | |
GTATACTATCCTGCAATAAA+GGG | + | chr6_1:90476630-90476649 | None:intergenic | 30.0% | |
AGTATACTATCCTGCAATAA+AGG | + | chr6_1:90476631-90476650 | None:intergenic | 30.0% | |
!!! | TGGGTACAATTTTTTTTTGG+AGG | - | chr6_1:90476668-90476687 | Msa0897890:CDS | 30.0% |
AAATTCCATACCTGTAATCA+GGG | + | chr6_1:90476750-90476769 | None:intergenic | 30.0% | |
TAATGCTGCAAACAAACATA+TGG | - | chr6_1:90476776-90476795 | Msa0897890:CDS | 30.0% | |
!!! | CAGGGTTTTAAAACATTGAT+TGG | + | chr6_1:90477047-90477066 | None:intergenic | 30.0% |
GAGCTAATTTGAATTTGGAT+TGG | + | chr6_1:90477318-90477337 | None:intergenic | 30.0% | |
ACTATGTTTCGAACTTACTT+GGG | + | chr6_1:90477516-90477535 | None:intergenic | 30.0% | |
AAAAAAAAAGGAAAACGGGT+CGG | - | chr6_1:90477570-90477589 | Msa0897890:intron | 30.0% | |
TGACTATCAATTTCGTAGAT+AGG | - | chr6_1:90477859-90477878 | Msa0897890:intron | 30.0% | |
GACTATCAATTTCGTAGATA+GGG | - | chr6_1:90477860-90477879 | Msa0897890:intron | 30.0% | |
GTAACATATTGCTGCAAATT+TGG | + | chr6_1:90477946-90477965 | None:intergenic | 30.0% | |
! | CTGATACACATTCTGATTTT+AGG | - | chr6_1:90477989-90478008 | Msa0897890:intron | 30.0% |
AAAGAAAACGAAGGTAGAAA+AGG | + | chr6_1:90478093-90478112 | None:intergenic | 30.0% | |
!! | TTGATGATGAAAGAAAACGA+AGG | + | chr6_1:90478102-90478121 | None:intergenic | 30.0% |
! | AATTGACTTAAGAAGAAGAG+TGG | + | chr6_1:90478141-90478160 | None:intergenic | 30.0% |
! | ATGAAGGATGTGAAACTTTT+GGG | + | chr6_1:90478340-90478359 | None:intergenic | 30.0% |
! | TATGAAGGATGTGAAACTTT+TGG | + | chr6_1:90478341-90478360 | None:intergenic | 30.0% |
! | ATCAAATGTCTCAACTTTTG+AGG | - | chr6_1:90478364-90478383 | Msa0897890:intron | 30.0% |
!! | TCAACTTTTGAGGATTGTAA+GGG | - | chr6_1:90478374-90478393 | Msa0897890:intron | 30.0% |
GAATTCATTGACAAATGACT+CGG | - | chr6_1:90478692-90478711 | Msa0897890:intron | 30.0% | |
AGTTAACATGTCACAATACA+AGG | - | chr6_1:90479058-90479077 | Msa0897890:intron | 30.0% | |
AGGCAAATAGAAATAGGAAT+GGG | + | chr6_1:90479304-90479323 | None:intergenic | 30.0% | |
CAATAGTAGAAACATCATGT+AGG | + | chr6_1:90479512-90479531 | None:intergenic | 30.0% | |
GCGAAAATGAAAATCATTCT+AGG | - | chr6_1:90479560-90479579 | Msa0897890:five_prime_UTR | 30.0% | |
CAAGTGTATACTATTCTTGA+TGG | + | chr6_1:90475486-90475505 | None:intergenic | 30.0% | |
! | CAAGAGAAACTTGAGTTTTA+CGG | - | chr6_1:90475517-90475536 | Msa0897890:CDS | 30.0% |
!!! | TAGTTTATTTTTAAGGTGGG+CGG | - | chr6_1:90475817-90475836 | Msa0897890:intron | 30.0% |
!! | TTATTTTGTAGTCCAACAAG+GGG | - | chr6_1:90475892-90475911 | Msa0897890:intron | 30.0% |
! | CGGTAATTATTTTCACCTAT+GGG | + | chr6_1:90476519-90476538 | None:intergenic | 30.0% |
! | ACGGTAATTATTTTCACCTA+TGG | + | chr6_1:90476520-90476539 | None:intergenic | 30.0% |
TATACTATCCTGCAATAAAG+GGG | + | chr6_1:90476629-90476648 | None:intergenic | 30.0% | |
GTATACTATCCTGCAATAAA+GGG | + | chr6_1:90476630-90476649 | None:intergenic | 30.0% | |
AGTATACTATCCTGCAATAA+AGG | + | chr6_1:90476631-90476650 | None:intergenic | 30.0% | |
!!! | TGGGTACAATTTTTTTTTGG+AGG | - | chr6_1:90476668-90476687 | Msa0897890:CDS | 30.0% |
AAATTCCATACCTGTAATCA+GGG | + | chr6_1:90476750-90476769 | None:intergenic | 30.0% | |
TAATGCTGCAAACAAACATA+TGG | - | chr6_1:90476776-90476795 | Msa0897890:CDS | 30.0% | |
!!! | CAGGGTTTTAAAACATTGAT+TGG | + | chr6_1:90477047-90477066 | None:intergenic | 30.0% |
GAGCTAATTTGAATTTGGAT+TGG | + | chr6_1:90477318-90477337 | None:intergenic | 30.0% | |
ACTATGTTTCGAACTTACTT+GGG | + | chr6_1:90477516-90477535 | None:intergenic | 30.0% | |
AAAAAAAAAGGAAAACGGGT+CGG | - | chr6_1:90477570-90477589 | Msa0897890:intron | 30.0% | |
TGACTATCAATTTCGTAGAT+AGG | - | chr6_1:90477859-90477878 | Msa0897890:intron | 30.0% | |
GACTATCAATTTCGTAGATA+GGG | - | chr6_1:90477860-90477879 | Msa0897890:intron | 30.0% | |
GTAACATATTGCTGCAAATT+TGG | + | chr6_1:90477946-90477965 | None:intergenic | 30.0% | |
! | CTGATACACATTCTGATTTT+AGG | - | chr6_1:90477989-90478008 | Msa0897890:intron | 30.0% |
AAAGAAAACGAAGGTAGAAA+AGG | + | chr6_1:90478093-90478112 | None:intergenic | 30.0% | |
!! | TTGATGATGAAAGAAAACGA+AGG | + | chr6_1:90478102-90478121 | None:intergenic | 30.0% |
! | AATTGACTTAAGAAGAAGAG+TGG | + | chr6_1:90478141-90478160 | None:intergenic | 30.0% |
! | ATGAAGGATGTGAAACTTTT+GGG | + | chr6_1:90478340-90478359 | None:intergenic | 30.0% |
! | TATGAAGGATGTGAAACTTT+TGG | + | chr6_1:90478341-90478360 | None:intergenic | 30.0% |
! | ATCAAATGTCTCAACTTTTG+AGG | - | chr6_1:90478364-90478383 | Msa0897890:intron | 30.0% |
!! | TCAACTTTTGAGGATTGTAA+GGG | - | chr6_1:90478374-90478393 | Msa0897890:intron | 30.0% |
GAATTCATTGACAAATGACT+CGG | - | chr6_1:90478692-90478711 | Msa0897890:intron | 30.0% | |
AGTTAACATGTCACAATACA+AGG | - | chr6_1:90479058-90479077 | Msa0897890:intron | 30.0% | |
AGGCAAATAGAAATAGGAAT+GGG | + | chr6_1:90479304-90479323 | None:intergenic | 30.0% | |
CAATAGTAGAAACATCATGT+AGG | + | chr6_1:90479512-90479531 | None:intergenic | 30.0% | |
GCGAAAATGAAAATCATTCT+AGG | - | chr6_1:90479560-90479579 | Msa0897890:five_prime_UTR | 30.0% | |
! | TATTTTGTAGTCCAACAAGG+GGG | - | chr6_1:90475893-90475912 | Msa0897890:intron | 35.0% |
CATGCATAACATATCATAGG+TGG | + | chr6_1:90475966-90475985 | None:intergenic | 35.0% | |
GCACATGCATAACATATCAT+AGG | + | chr6_1:90475969-90475988 | None:intergenic | 35.0% | |
TGAAAATTGAGTCTACCAGA+AGG | - | chr6_1:90476271-90476290 | Msa0897890:CDS | 35.0% | |
GAAAATTGAGTCTACCAGAA+GGG | - | chr6_1:90476272-90476291 | Msa0897890:CDS | 35.0% | |
!! | CTTTTGATGGCAATAGATAG+AGG | + | chr6_1:90476327-90476346 | None:intergenic | 35.0% |
CTCTATCTATTGCCATCAAA+AGG | - | chr6_1:90476325-90476344 | Msa0897890:CDS | 35.0% | |
! | ATCCTTGTTAAGCCTTTTGA+TGG | + | chr6_1:90476340-90476359 | None:intergenic | 35.0% |
ATACTATCCTGCAATAAAGG+GGG | + | chr6_1:90476628-90476647 | None:intergenic | 35.0% | |
ATTGCAGGATAGTATACTAC+TGG | - | chr6_1:90476633-90476652 | Msa0897890:CDS | 35.0% | |
ACTACTGGATAGTATACTAC+TGG | - | chr6_1:90476648-90476667 | Msa0897890:CDS | 35.0% | |
CTACTGGATAGTATACTACT+GGG | - | chr6_1:90476649-90476668 | Msa0897890:CDS | 35.0% | |
CAAATTCCATACCTGTAATC+AGG | + | chr6_1:90476751-90476770 | None:intergenic | 35.0% | |
TTTGTAGAAATAGCCAAGGT+AGG | + | chr6_1:90476889-90476908 | None:intergenic | 35.0% | |
!!! | CAATGTTTTAAAACCCTGAC+AGG | - | chr6_1:90477049-90477068 | Msa0897890:intron | 35.0% |
GACTATGTTCAGAACTTACT+TGG | + | chr6_1:90477464-90477483 | None:intergenic | 35.0% | |
GACTATGTTTCGAACTTACT+TGG | + | chr6_1:90477517-90477536 | None:intergenic | 35.0% | |
AAAAAAAAGGAAAACGGGTC+GGG | - | chr6_1:90477571-90477590 | Msa0897890:intron | 35.0% | |
ACATATTGCTGCAAATTTGG+AGG | + | chr6_1:90477943-90477962 | None:intergenic | 35.0% | |
CAGAATGTGTATCAGAACAA+TGG | + | chr6_1:90477984-90478003 | None:intergenic | 35.0% | |
CTGAAATTTCCACATCCAAA+AGG | + | chr6_1:90478210-90478229 | None:intergenic | 35.0% | |
AACATCCAACCAAGTTATTG+CGG | - | chr6_1:90478258-90478277 | Msa0897890:intron | 35.0% | |
TGACAATCAAGCTTGAAGTT+TGG | + | chr6_1:90478288-90478307 | None:intergenic | 35.0% | |
TTCAAGCTTGATTGTCAACA+TGG | - | chr6_1:90478291-90478310 | Msa0897890:intron | 35.0% | |
!! | CTCAACTTTTGAGGATTGTA+AGG | - | chr6_1:90478373-90478392 | Msa0897890:intron | 35.0% |
TATACTCTATTGTACGAGTG+TGG | - | chr6_1:90478504-90478523 | Msa0897890:intron | 35.0% | |
! | CCAATTTGTCACTTGAAACT+AGG | + | chr6_1:90478620-90478639 | None:intergenic | 35.0% |
! | CCTAGTTTCAAGTGACAAAT+TGG | - | chr6_1:90478617-90478636 | Msa0897890:intron | 35.0% |
AAGAATAGTATCACCTTTCC+TGG | - | chr6_1:90478663-90478682 | Msa0897890:intron | 35.0% | |
!! | ACAAATGACTCGGATGTTTT+AGG | - | chr6_1:90478702-90478721 | Msa0897890:intron | 35.0% |
!! | TGTTTTAGGTGAAGGATTTG+AGG | - | chr6_1:90478716-90478735 | Msa0897890:intron | 35.0% |
ATGAAATCTGGTAGGAAATG+CGG | - | chr6_1:90478780-90478799 | Msa0897890:intron | 35.0% | |
GATGGAGTAACATCATCAAA+TGG | - | chr6_1:90478858-90478877 | Msa0897890:intron | 35.0% | |
!! | TTTCCGAGCTTTAAATCCAA+CGG | - | chr6_1:90479189-90479208 | Msa0897890:intron | 35.0% |
TGAGCAAGGTTTGTAAATAG+TGG | - | chr6_1:90479254-90479273 | Msa0897890:intron | 35.0% | |
GAACTACAAACTTACGAGTA+GGG | + | chr6_1:90479281-90479300 | None:intergenic | 35.0% | |
GGCAAATAGAAATAGGAATG+GGG | + | chr6_1:90479303-90479322 | None:intergenic | 35.0% | |
GAGGCAAATAGAAATAGGAA+TGG | + | chr6_1:90479305-90479324 | None:intergenic | 35.0% | |
ACTGAGAGGCAAATAGAAAT+AGG | + | chr6_1:90479310-90479329 | None:intergenic | 35.0% | |
GTAGGAATCTGTTAGAACAT+TGG | + | chr6_1:90479494-90479513 | None:intergenic | 35.0% | |
! | TATTTTGTAGTCCAACAAGG+GGG | - | chr6_1:90475893-90475912 | Msa0897890:intron | 35.0% |
CATGCATAACATATCATAGG+TGG | + | chr6_1:90475966-90475985 | None:intergenic | 35.0% | |
GCACATGCATAACATATCAT+AGG | + | chr6_1:90475969-90475988 | None:intergenic | 35.0% | |
TGAAAATTGAGTCTACCAGA+AGG | - | chr6_1:90476271-90476290 | Msa0897890:CDS | 35.0% | |
GAAAATTGAGTCTACCAGAA+GGG | - | chr6_1:90476272-90476291 | Msa0897890:CDS | 35.0% | |
!! | CTTTTGATGGCAATAGATAG+AGG | + | chr6_1:90476327-90476346 | None:intergenic | 35.0% |
CTCTATCTATTGCCATCAAA+AGG | - | chr6_1:90476325-90476344 | Msa0897890:CDS | 35.0% | |
! | ATCCTTGTTAAGCCTTTTGA+TGG | + | chr6_1:90476340-90476359 | None:intergenic | 35.0% |
ATACTATCCTGCAATAAAGG+GGG | + | chr6_1:90476628-90476647 | None:intergenic | 35.0% | |
ATTGCAGGATAGTATACTAC+TGG | - | chr6_1:90476633-90476652 | Msa0897890:CDS | 35.0% | |
ACTACTGGATAGTATACTAC+TGG | - | chr6_1:90476648-90476667 | Msa0897890:CDS | 35.0% | |
CTACTGGATAGTATACTACT+GGG | - | chr6_1:90476649-90476668 | Msa0897890:CDS | 35.0% | |
CAAATTCCATACCTGTAATC+AGG | + | chr6_1:90476751-90476770 | None:intergenic | 35.0% | |
TTTGTAGAAATAGCCAAGGT+AGG | + | chr6_1:90476889-90476908 | None:intergenic | 35.0% | |
!!! | CAATGTTTTAAAACCCTGAC+AGG | - | chr6_1:90477049-90477068 | Msa0897890:intron | 35.0% |
GACTATGTTCAGAACTTACT+TGG | + | chr6_1:90477464-90477483 | None:intergenic | 35.0% | |
GACTATGTTTCGAACTTACT+TGG | + | chr6_1:90477517-90477536 | None:intergenic | 35.0% | |
AAAAAAAAGGAAAACGGGTC+GGG | - | chr6_1:90477571-90477590 | Msa0897890:intron | 35.0% | |
ACATATTGCTGCAAATTTGG+AGG | + | chr6_1:90477943-90477962 | None:intergenic | 35.0% | |
CAGAATGTGTATCAGAACAA+TGG | + | chr6_1:90477984-90478003 | None:intergenic | 35.0% | |
CTGAAATTTCCACATCCAAA+AGG | + | chr6_1:90478210-90478229 | None:intergenic | 35.0% | |
AACATCCAACCAAGTTATTG+CGG | - | chr6_1:90478258-90478277 | Msa0897890:intron | 35.0% | |
TGACAATCAAGCTTGAAGTT+TGG | + | chr6_1:90478288-90478307 | None:intergenic | 35.0% | |
TTCAAGCTTGATTGTCAACA+TGG | - | chr6_1:90478291-90478310 | Msa0897890:intron | 35.0% | |
!! | CTCAACTTTTGAGGATTGTA+AGG | - | chr6_1:90478373-90478392 | Msa0897890:intron | 35.0% |
TATACTCTATTGTACGAGTG+TGG | - | chr6_1:90478504-90478523 | Msa0897890:intron | 35.0% | |
! | CCAATTTGTCACTTGAAACT+AGG | + | chr6_1:90478620-90478639 | None:intergenic | 35.0% |
! | CCTAGTTTCAAGTGACAAAT+TGG | - | chr6_1:90478617-90478636 | Msa0897890:intron | 35.0% |
AAGAATAGTATCACCTTTCC+TGG | - | chr6_1:90478663-90478682 | Msa0897890:intron | 35.0% | |
!! | ACAAATGACTCGGATGTTTT+AGG | - | chr6_1:90478702-90478721 | Msa0897890:intron | 35.0% |
!! | TGTTTTAGGTGAAGGATTTG+AGG | - | chr6_1:90478716-90478735 | Msa0897890:intron | 35.0% |
ATGAAATCTGGTAGGAAATG+CGG | - | chr6_1:90478780-90478799 | Msa0897890:intron | 35.0% | |
GATGGAGTAACATCATCAAA+TGG | - | chr6_1:90478858-90478877 | Msa0897890:intron | 35.0% | |
!! | TTTCCGAGCTTTAAATCCAA+CGG | - | chr6_1:90479189-90479208 | Msa0897890:intron | 35.0% |
TGAGCAAGGTTTGTAAATAG+TGG | - | chr6_1:90479254-90479273 | Msa0897890:intron | 35.0% | |
GAACTACAAACTTACGAGTA+GGG | + | chr6_1:90479281-90479300 | None:intergenic | 35.0% | |
GGCAAATAGAAATAGGAATG+GGG | + | chr6_1:90479303-90479322 | None:intergenic | 35.0% | |
GAGGCAAATAGAAATAGGAA+TGG | + | chr6_1:90479305-90479324 | None:intergenic | 35.0% | |
ACTGAGAGGCAAATAGAAAT+AGG | + | chr6_1:90479310-90479329 | None:intergenic | 35.0% | |
GTAGGAATCTGTTAGAACAT+TGG | + | chr6_1:90479494-90479513 | None:intergenic | 35.0% | |
ACGTCTTAGTTGCCATCAAA+AGG | - | chr6_1:90475556-90475575 | Msa0897890:CDS | 40.0% | |
TGCCATCAAAAGGCTTAACA+AGG | - | chr6_1:90476335-90476354 | Msa0897890:CDS | 40.0% | |
GCTTAACAAGGATGCATTAC+AGG | - | chr6_1:90476347-90476366 | Msa0897890:CDS | 40.0% | |
TACAACGTGCCGTATATATG+CGG | - | chr6_1:90476489-90476508 | Msa0897890:CDS | 40.0% | |
ATGGGTGTACCGCATATATA+CGG | + | chr6_1:90476501-90476520 | None:intergenic | 40.0% | |
TATATATGCGGTACACCCAT+AGG | - | chr6_1:90476501-90476520 | Msa0897890:CDS | 40.0% | |
!!! | TCTTGCTTTTGGTGTTAGGT+GGG | + | chr6_1:90476557-90476576 | None:intergenic | 40.0% |
!!! | TTCCTCTTGCTTTTGGTGTT+AGG | + | chr6_1:90476561-90476580 | None:intergenic | 40.0% |
!! | GGCTTTTGATTGTTTTGTGC+AGG | + | chr6_1:90476591-90476610 | None:intergenic | 40.0% |
GGGAAATGCTAGAAGAAACT+AGG | - | chr6_1:90478028-90478047 | Msa0897890:intron | 40.0% | |
AGAAACTAGGAACATCGCTT+TGG | - | chr6_1:90478041-90478060 | Msa0897890:intron | 40.0% | |
AACGAAGGTAGAAAAGGAAG+CGG | + | chr6_1:90478087-90478106 | None:intergenic | 40.0% | |
GACTTAAGAAGAAGAGTGGA+AGG | + | chr6_1:90478137-90478156 | None:intergenic | 40.0% | |
AAAAGGTTCACAAGATGTGG+TGG | + | chr6_1:90478193-90478212 | None:intergenic | 40.0% | |
! | ACCACATCTTGTGAACCTTT+TGG | - | chr6_1:90478192-90478211 | Msa0897890:intron | 40.0% |
TCCAAAAGGTTCACAAGATG+TGG | + | chr6_1:90478196-90478215 | None:intergenic | 40.0% | |
! | TCTTGTGAACCTTTTGGATG+TGG | - | chr6_1:90478198-90478217 | Msa0897890:intron | 40.0% |
GGATGTTAAGACTCCAGAAT+GGG | + | chr6_1:90478245-90478264 | None:intergenic | 40.0% | |
TGGATGTTAAGACTCCAGAA+TGG | + | chr6_1:90478246-90478265 | None:intergenic | 40.0% | |
TTTGGATGACCGCAATAACT+TGG | + | chr6_1:90478270-90478289 | None:intergenic | 40.0% | |
GGATTGTAAGGGACGATTTA+TGG | - | chr6_1:90478385-90478404 | Msa0897890:intron | 40.0% | |
! | AACGTAGAGGAGTTTGAGTT+TGG | + | chr6_1:90478537-90478556 | None:intergenic | 40.0% |
AACTTCAGAACTCAACGTAG+AGG | + | chr6_1:90478550-90478569 | None:intergenic | 40.0% | |
TGAAGTGATTTCTTGCCTCA+TGG | - | chr6_1:90478572-90478591 | Msa0897890:intron | 40.0% | |
TGAATTCTTCAAGCCAGGAA+AGG | + | chr6_1:90478679-90478698 | None:intergenic | 40.0% | |
GTCAATGAATTCTTCAAGCC+AGG | + | chr6_1:90478684-90478703 | None:intergenic | 40.0% | |
! | TTAGGTGAAGGATTTGAGGT+TGG | - | chr6_1:90478720-90478739 | Msa0897890:intron | 40.0% |
! | TAGGTGAAGGATTTGAGGTT+GGG | - | chr6_1:90478721-90478740 | Msa0897890:intron | 40.0% |
TTCAGTTATGTGTCTCTTGC+CGG | - | chr6_1:90478821-90478840 | Msa0897890:intron | 40.0% | |
TGATGTTACTCCATCTGCAA+TGG | + | chr6_1:90478853-90478872 | None:intergenic | 40.0% | |
! | CGATACGTCTAGTTCATGTT+TGG | - | chr6_1:90479027-90479046 | Msa0897890:intron | 40.0% |
GGAACTACAAACTTACGAGT+AGG | + | chr6_1:90479282-90479301 | None:intergenic | 40.0% | |
!! | AATCATGGAGGTTTTCTGGT+GGG | + | chr6_1:90479334-90479353 | None:intergenic | 40.0% |
! | AAGGAATCATGGAGGTTTTC+TGG | + | chr6_1:90479338-90479357 | None:intergenic | 40.0% |
ACGTCTTAGTTGCCATCAAA+AGG | - | chr6_1:90475556-90475575 | Msa0897890:CDS | 40.0% | |
TGCCATCAAAAGGCTTAACA+AGG | - | chr6_1:90476335-90476354 | Msa0897890:CDS | 40.0% | |
GCTTAACAAGGATGCATTAC+AGG | - | chr6_1:90476347-90476366 | Msa0897890:CDS | 40.0% | |
TACAACGTGCCGTATATATG+CGG | - | chr6_1:90476489-90476508 | Msa0897890:CDS | 40.0% | |
ATGGGTGTACCGCATATATA+CGG | + | chr6_1:90476501-90476520 | None:intergenic | 40.0% | |
TATATATGCGGTACACCCAT+AGG | - | chr6_1:90476501-90476520 | Msa0897890:CDS | 40.0% | |
!!! | TCTTGCTTTTGGTGTTAGGT+GGG | + | chr6_1:90476557-90476576 | None:intergenic | 40.0% |
!!! | TTCCTCTTGCTTTTGGTGTT+AGG | + | chr6_1:90476561-90476580 | None:intergenic | 40.0% |
!! | GGCTTTTGATTGTTTTGTGC+AGG | + | chr6_1:90476591-90476610 | None:intergenic | 40.0% |
GGGAAATGCTAGAAGAAACT+AGG | - | chr6_1:90478028-90478047 | Msa0897890:intron | 40.0% | |
AGAAACTAGGAACATCGCTT+TGG | - | chr6_1:90478041-90478060 | Msa0897890:intron | 40.0% | |
AACGAAGGTAGAAAAGGAAG+CGG | + | chr6_1:90478087-90478106 | None:intergenic | 40.0% | |
GACTTAAGAAGAAGAGTGGA+AGG | + | chr6_1:90478137-90478156 | None:intergenic | 40.0% | |
AAAAGGTTCACAAGATGTGG+TGG | + | chr6_1:90478193-90478212 | None:intergenic | 40.0% | |
! | ACCACATCTTGTGAACCTTT+TGG | - | chr6_1:90478192-90478211 | Msa0897890:intron | 40.0% |
TCCAAAAGGTTCACAAGATG+TGG | + | chr6_1:90478196-90478215 | None:intergenic | 40.0% | |
! | TCTTGTGAACCTTTTGGATG+TGG | - | chr6_1:90478198-90478217 | Msa0897890:intron | 40.0% |
GGATGTTAAGACTCCAGAAT+GGG | + | chr6_1:90478245-90478264 | None:intergenic | 40.0% | |
TGGATGTTAAGACTCCAGAA+TGG | + | chr6_1:90478246-90478265 | None:intergenic | 40.0% | |
TTTGGATGACCGCAATAACT+TGG | + | chr6_1:90478270-90478289 | None:intergenic | 40.0% | |
GGATTGTAAGGGACGATTTA+TGG | - | chr6_1:90478385-90478404 | Msa0897890:intron | 40.0% | |
! | AACGTAGAGGAGTTTGAGTT+TGG | + | chr6_1:90478537-90478556 | None:intergenic | 40.0% |
AACTTCAGAACTCAACGTAG+AGG | + | chr6_1:90478550-90478569 | None:intergenic | 40.0% | |
TGAAGTGATTTCTTGCCTCA+TGG | - | chr6_1:90478572-90478591 | Msa0897890:intron | 40.0% | |
TGAATTCTTCAAGCCAGGAA+AGG | + | chr6_1:90478679-90478698 | None:intergenic | 40.0% | |
GTCAATGAATTCTTCAAGCC+AGG | + | chr6_1:90478684-90478703 | None:intergenic | 40.0% | |
! | TTAGGTGAAGGATTTGAGGT+TGG | - | chr6_1:90478720-90478739 | Msa0897890:intron | 40.0% |
! | TAGGTGAAGGATTTGAGGTT+GGG | - | chr6_1:90478721-90478740 | Msa0897890:intron | 40.0% |
TTCAGTTATGTGTCTCTTGC+CGG | - | chr6_1:90478821-90478840 | Msa0897890:intron | 40.0% | |
TGATGTTACTCCATCTGCAA+TGG | + | chr6_1:90478853-90478872 | None:intergenic | 40.0% | |
! | CGATACGTCTAGTTCATGTT+TGG | - | chr6_1:90479027-90479046 | Msa0897890:intron | 40.0% |
GGAACTACAAACTTACGAGT+AGG | + | chr6_1:90479282-90479301 | None:intergenic | 40.0% | |
!! | AATCATGGAGGTTTTCTGGT+GGG | + | chr6_1:90479334-90479353 | None:intergenic | 40.0% |
! | AAGGAATCATGGAGGTTTTC+TGG | + | chr6_1:90479338-90479357 | None:intergenic | 40.0% |
! | CTACTCATTTTCCCCCTTGT+TGG | + | chr6_1:90475907-90475926 | None:intergenic | 45.0% |
CTCACTTAGTGGGGTAAAAG+TGG | + | chr6_1:90476128-90476147 | None:intergenic | 45.0% | |
! | CACTTTTACCCCACTAAGTG+AGG | - | chr6_1:90476126-90476145 | Msa0897890:intron | 45.0% |
TTTACCCCACTAAGTGAGGT+CGG | - | chr6_1:90476130-90476149 | Msa0897890:intron | 45.0% | |
TCTAAGAGTCTAGACCCTTC+TGG | + | chr6_1:90476289-90476308 | None:intergenic | 45.0% | |
GGGTCTAGACTCTTAGAATG+TGG | - | chr6_1:90476292-90476311 | Msa0897890:CDS | 45.0% | |
AACAAGGATGCATTACAGGC+AGG | - | chr6_1:90476351-90476370 | Msa0897890:CDS | 45.0% | |
ACAAGGATGCATTACAGGCA+GGG | - | chr6_1:90476352-90476371 | Msa0897890:CDS | 45.0% | |
GTGGGGATTCCTCATGTATA+CGG | + | chr6_1:90476539-90476558 | None:intergenic | 45.0% | |
!!! | CTTGCTTTTGGTGTTAGGTG+GGG | + | chr6_1:90476556-90476575 | None:intergenic | 45.0% |
!!! | CTCTTGCTTTTGGTGTTAGG+TGG | + | chr6_1:90476558-90476577 | None:intergenic | 45.0% |
CACCTAACACCAAAAGCAAG+AGG | - | chr6_1:90476556-90476575 | Msa0897890:CDS | 45.0% | |
!! | AAAAGGGTATCCACTGTCTC+TGG | - | chr6_1:90476987-90477006 | Msa0897890:CDS | 45.0% |
CAGCTGGCTAATTGCATATC+CGG | - | chr6_1:90477650-90477669 | Msa0897890:intron | 45.0% | |
GCGATATTAGCTACCCATTC+TGG | - | chr6_1:90478229-90478248 | Msa0897890:intron | 45.0% | |
GATGACCGCAATAACTTGGT+TGG | + | chr6_1:90478266-90478285 | None:intergenic | 45.0% | |
AGTGATTTCTTGCCTCATGG+AGG | - | chr6_1:90478575-90478594 | Msa0897890:intron | 45.0% | |
GTGATTTCTTGCCTCATGGA+GGG | - | chr6_1:90478576-90478595 | Msa0897890:intron | 45.0% | |
!! | GACTCGGATGTTTTAGGTGA+AGG | - | chr6_1:90478708-90478727 | Msa0897890:intron | 45.0% |
GGTGTGGGAGAAGAAATATG+TGG | - | chr6_1:90478750-90478769 | Msa0897890:intron | 45.0% | |
GTGGGAGAAGAAATATGTGG+TGG | - | chr6_1:90478753-90478772 | Msa0897890:intron | 45.0% | |
TGTGGTGGTTGCATGAAATC+TGG | - | chr6_1:90478768-90478787 | Msa0897890:intron | 45.0% | |
GTGGTTGCATGAAATCTGGT+AGG | - | chr6_1:90478772-90478791 | Msa0897890:intron | 45.0% | |
! | CCATCTGCAATGGATTTCTC+CGG | + | chr6_1:90478843-90478862 | None:intergenic | 45.0% |
! | CGTCCGTTGGATTTAAAGCT+CGG | + | chr6_1:90479195-90479214 | None:intergenic | 45.0% |
GATTACGAATTCACGTCCGT+TGG | + | chr6_1:90479208-90479227 | None:intergenic | 45.0% | |
CTCAAGTACACTCTTGAGCA+AGG | - | chr6_1:90479240-90479259 | Msa0897890:intron | 45.0% | |
! | GAATCATGGAGGTTTTCTGG+TGG | + | chr6_1:90479335-90479354 | None:intergenic | 45.0% |
AAGAGTCGCTGAAGGAATCA+TGG | + | chr6_1:90479349-90479368 | None:intergenic | 45.0% | |
! | CTACTCATTTTCCCCCTTGT+TGG | + | chr6_1:90475907-90475926 | None:intergenic | 45.0% |
CTCACTTAGTGGGGTAAAAG+TGG | + | chr6_1:90476128-90476147 | None:intergenic | 45.0% | |
! | CACTTTTACCCCACTAAGTG+AGG | - | chr6_1:90476126-90476145 | Msa0897890:intron | 45.0% |
TTTACCCCACTAAGTGAGGT+CGG | - | chr6_1:90476130-90476149 | Msa0897890:intron | 45.0% | |
TCTAAGAGTCTAGACCCTTC+TGG | + | chr6_1:90476289-90476308 | None:intergenic | 45.0% | |
GGGTCTAGACTCTTAGAATG+TGG | - | chr6_1:90476292-90476311 | Msa0897890:CDS | 45.0% | |
AACAAGGATGCATTACAGGC+AGG | - | chr6_1:90476351-90476370 | Msa0897890:CDS | 45.0% | |
ACAAGGATGCATTACAGGCA+GGG | - | chr6_1:90476352-90476371 | Msa0897890:CDS | 45.0% | |
GTGGGGATTCCTCATGTATA+CGG | + | chr6_1:90476539-90476558 | None:intergenic | 45.0% | |
!!! | CTTGCTTTTGGTGTTAGGTG+GGG | + | chr6_1:90476556-90476575 | None:intergenic | 45.0% |
!!! | CTCTTGCTTTTGGTGTTAGG+TGG | + | chr6_1:90476558-90476577 | None:intergenic | 45.0% |
CACCTAACACCAAAAGCAAG+AGG | - | chr6_1:90476556-90476575 | Msa0897890:CDS | 45.0% | |
!! | AAAAGGGTATCCACTGTCTC+TGG | - | chr6_1:90476987-90477006 | Msa0897890:CDS | 45.0% |
CAGCTGGCTAATTGCATATC+CGG | - | chr6_1:90477650-90477669 | Msa0897890:intron | 45.0% | |
GCGATATTAGCTACCCATTC+TGG | - | chr6_1:90478229-90478248 | Msa0897890:intron | 45.0% | |
GATGACCGCAATAACTTGGT+TGG | + | chr6_1:90478266-90478285 | None:intergenic | 45.0% | |
AGTGATTTCTTGCCTCATGG+AGG | - | chr6_1:90478575-90478594 | Msa0897890:intron | 45.0% | |
GTGATTTCTTGCCTCATGGA+GGG | - | chr6_1:90478576-90478595 | Msa0897890:intron | 45.0% | |
!! | GACTCGGATGTTTTAGGTGA+AGG | - | chr6_1:90478708-90478727 | Msa0897890:intron | 45.0% |
GGTGTGGGAGAAGAAATATG+TGG | - | chr6_1:90478750-90478769 | Msa0897890:intron | 45.0% | |
GTGGGAGAAGAAATATGTGG+TGG | - | chr6_1:90478753-90478772 | Msa0897890:intron | 45.0% | |
TGTGGTGGTTGCATGAAATC+TGG | - | chr6_1:90478768-90478787 | Msa0897890:intron | 45.0% | |
GTGGTTGCATGAAATCTGGT+AGG | - | chr6_1:90478772-90478791 | Msa0897890:intron | 45.0% | |
! | CCATCTGCAATGGATTTCTC+CGG | + | chr6_1:90478843-90478862 | None:intergenic | 45.0% |
! | CGTCCGTTGGATTTAAAGCT+CGG | + | chr6_1:90479195-90479214 | None:intergenic | 45.0% |
GATTACGAATTCACGTCCGT+TGG | + | chr6_1:90479208-90479227 | None:intergenic | 45.0% | |
CTCAAGTACACTCTTGAGCA+AGG | - | chr6_1:90479240-90479259 | Msa0897890:intron | 45.0% | |
! | GAATCATGGAGGTTTTCTGG+TGG | + | chr6_1:90479335-90479354 | None:intergenic | 45.0% |
AAGAGTCGCTGAAGGAATCA+TGG | + | chr6_1:90479349-90479368 | None:intergenic | 45.0% | |
TTGAGCCGACCTCACTTAGT+GGG | + | chr6_1:90476138-90476157 | None:intergenic | 50.0% | |
ATTGAGCCGACCTCACTTAG+TGG | + | chr6_1:90476139-90476158 | None:intergenic | 50.0% | |
!! | TCGGCTCTGGGAATGAAAAG+AGG | - | chr6_1:90476397-90476416 | Msa0897890:CDS | 50.0% |
GTTTGCACCCCCTTTATTGC+AGG | - | chr6_1:90476618-90476637 | Msa0897890:CDS | 50.0% | |
!! | TTTTTGGAGGCCCATCCTTG+AGG | - | chr6_1:90476681-90476700 | Msa0897890:CDS | 50.0% |
!! | TTTTGGAGGCCCATCCTTGA+GGG | - | chr6_1:90476682-90476701 | Msa0897890:CDS | 50.0% |
GCAAACAGCTCAACCTAGCT+GGG | + | chr6_1:90476711-90476730 | None:intergenic | 50.0% | |
TGCAAACAGCTCAACCTAGC+TGG | + | chr6_1:90476712-90476731 | None:intergenic | 50.0% | |
TCCATACCTGTAATCAGGGC+CGG | + | chr6_1:90476746-90476765 | None:intergenic | 50.0% | |
ATCCACTGTCTCTGGATCTG+TGG | - | chr6_1:90476995-90477014 | Msa0897890:CDS | 50.0% | |
ATCCACAGATCCAGAGACAG+TGG | + | chr6_1:90477000-90477019 | None:intergenic | 50.0% | |
TGGTTCACTGGTCGAACTAG+TGG | - | chr6_1:90477093-90477112 | Msa0897890:intron | 50.0% | |
GGTTCACTGGTCGAACTAGT+GGG | - | chr6_1:90477094-90477113 | Msa0897890:intron | 50.0% | |
! | CGAACTAGTGGGTCACTAGT+CGG | - | chr6_1:90477105-90477124 | Msa0897890:intron | 50.0% |
CGGACGCATGAATATTGACC+CGG | - | chr6_1:90477125-90477144 | Msa0897890:intron | 50.0% | |
AAAAAGGAAAACGGGTCGGG+TGG | - | chr6_1:90477574-90477593 | Msa0897890:intron | 50.0% | |
AAAAGGAAAACGGGTCGGGT+GGG | - | chr6_1:90477575-90477594 | Msa0897890:intron | 50.0% | |
GCAATTAGCCAGCTGAAACC+CGG | + | chr6_1:90477645-90477664 | None:intergenic | 50.0% | |
!!! | TTTTAAAACCCCGACCGACC+CGG | + | chr6_1:90477722-90477741 | None:intergenic | 50.0% |
!!! | CGGTCGGGGTTTTAAAACAC+TGG | - | chr6_1:90477725-90477744 | Msa0897890:intron | 50.0% |
!! | TCGCTTTGGAGCGTTCTTCT+CGG | - | chr6_1:90478055-90478074 | Msa0897890:intron | 50.0% |
GAAGGTAGAAAAGGAAGCGG+AGG | + | chr6_1:90478084-90478103 | None:intergenic | 50.0% | |
GGTGGACACAGCATTAGTAG+TGG | + | chr6_1:90478175-90478194 | None:intergenic | 50.0% | |
! | CACGAGTTTTACCCTCCATG+AGG | + | chr6_1:90478590-90478609 | None:intergenic | 50.0% |
! | GTGAAGGATTTGAGGTTGGG+TGG | - | chr6_1:90478724-90478743 | Msa0897890:intron | 50.0% |
CCGGAGAAATCCATTGCAGA+TGG | - | chr6_1:90478840-90478859 | Msa0897890:intron | 50.0% | |
AAGCTCGGAAATATCGCACG+AGG | + | chr6_1:90479180-90479199 | None:intergenic | 50.0% | |
!! | GTTTTCTGGTGGGAACTGAG+AGG | + | chr6_1:90479324-90479343 | None:intergenic | 50.0% |
AGTCGCTGAAGGAATCATGG+AGG | + | chr6_1:90479346-90479365 | None:intergenic | 50.0% | |
AGCTGCATAAGAGTCGCTGA+AGG | + | chr6_1:90479357-90479376 | None:intergenic | 50.0% | |
CAGCGACTCTTATGCAGCTT+AGG | - | chr6_1:90479358-90479377 | Msa0897890:intron | 50.0% | |
!! | GCACAGAGAAGCATTTGAGC+AGG | - | chr6_1:90479534-90479553 | Msa0897890:five_prime_UTR | 50.0% |
TTGAGCCGACCTCACTTAGT+GGG | + | chr6_1:90476138-90476157 | None:intergenic | 50.0% | |
ATTGAGCCGACCTCACTTAG+TGG | + | chr6_1:90476139-90476158 | None:intergenic | 50.0% | |
!! | TCGGCTCTGGGAATGAAAAG+AGG | - | chr6_1:90476397-90476416 | Msa0897890:CDS | 50.0% |
GTTTGCACCCCCTTTATTGC+AGG | - | chr6_1:90476618-90476637 | Msa0897890:CDS | 50.0% | |
!! | TTTTTGGAGGCCCATCCTTG+AGG | - | chr6_1:90476681-90476700 | Msa0897890:CDS | 50.0% |
!! | TTTTGGAGGCCCATCCTTGA+GGG | - | chr6_1:90476682-90476701 | Msa0897890:CDS | 50.0% |
GCAAACAGCTCAACCTAGCT+GGG | + | chr6_1:90476711-90476730 | None:intergenic | 50.0% | |
TGCAAACAGCTCAACCTAGC+TGG | + | chr6_1:90476712-90476731 | None:intergenic | 50.0% | |
TCCATACCTGTAATCAGGGC+CGG | + | chr6_1:90476746-90476765 | None:intergenic | 50.0% | |
ATCCACTGTCTCTGGATCTG+TGG | - | chr6_1:90476995-90477014 | Msa0897890:CDS | 50.0% | |
ATCCACAGATCCAGAGACAG+TGG | + | chr6_1:90477000-90477019 | None:intergenic | 50.0% | |
TGGTTCACTGGTCGAACTAG+TGG | - | chr6_1:90477093-90477112 | Msa0897890:intron | 50.0% | |
GGTTCACTGGTCGAACTAGT+GGG | - | chr6_1:90477094-90477113 | Msa0897890:intron | 50.0% | |
! | CGAACTAGTGGGTCACTAGT+CGG | - | chr6_1:90477105-90477124 | Msa0897890:intron | 50.0% |
CGGACGCATGAATATTGACC+CGG | - | chr6_1:90477125-90477144 | Msa0897890:intron | 50.0% | |
AAAAAGGAAAACGGGTCGGG+TGG | - | chr6_1:90477574-90477593 | Msa0897890:intron | 50.0% | |
AAAAGGAAAACGGGTCGGGT+GGG | - | chr6_1:90477575-90477594 | Msa0897890:intron | 50.0% | |
GCAATTAGCCAGCTGAAACC+CGG | + | chr6_1:90477645-90477664 | None:intergenic | 50.0% | |
!!! | TTTTAAAACCCCGACCGACC+CGG | + | chr6_1:90477722-90477741 | None:intergenic | 50.0% |
!!! | CGGTCGGGGTTTTAAAACAC+TGG | - | chr6_1:90477725-90477744 | Msa0897890:intron | 50.0% |
!! | TCGCTTTGGAGCGTTCTTCT+CGG | - | chr6_1:90478055-90478074 | Msa0897890:intron | 50.0% |
GAAGGTAGAAAAGGAAGCGG+AGG | + | chr6_1:90478084-90478103 | None:intergenic | 50.0% | |
GGTGGACACAGCATTAGTAG+TGG | + | chr6_1:90478175-90478194 | None:intergenic | 50.0% | |
! | CACGAGTTTTACCCTCCATG+AGG | + | chr6_1:90478590-90478609 | None:intergenic | 50.0% |
! | GTGAAGGATTTGAGGTTGGG+TGG | - | chr6_1:90478724-90478743 | Msa0897890:intron | 50.0% |
CCGGAGAAATCCATTGCAGA+TGG | - | chr6_1:90478840-90478859 | Msa0897890:intron | 50.0% | |
AAGCTCGGAAATATCGCACG+AGG | + | chr6_1:90479180-90479199 | None:intergenic | 50.0% | |
!! | GTTTTCTGGTGGGAACTGAG+AGG | + | chr6_1:90479324-90479343 | None:intergenic | 50.0% |
AGTCGCTGAAGGAATCATGG+AGG | + | chr6_1:90479346-90479365 | None:intergenic | 50.0% | |
AGCTGCATAAGAGTCGCTGA+AGG | + | chr6_1:90479357-90479376 | None:intergenic | 50.0% | |
CAGCGACTCTTATGCAGCTT+AGG | - | chr6_1:90479358-90479377 | Msa0897890:intron | 50.0% | |
!! | GCACAGAGAAGCATTTGAGC+AGG | - | chr6_1:90479534-90479553 | Msa0897890:five_prime_UTR | 50.0% |
TGAGCCGACCTCACTTAGTG+GGG | + | chr6_1:90476137-90476156 | None:intergenic | 55.0% | |
AGCCTCCGAATTCTCAGGGA+CGG | + | chr6_1:90476378-90476397 | None:intergenic | 55.0% | |
TCCCTGAGAATTCGGAGGCT+CGG | - | chr6_1:90476378-90476397 | Msa0897890:CDS | 55.0% | |
ACCAGGTCGATCACCTGTCA+GGG | + | chr6_1:90477065-90477084 | None:intergenic | 55.0% | |
ACAGGTGATCGACCTGGTCA+AGG | - | chr6_1:90477067-90477086 | Msa0897890:intron | 55.0% | |
AGTGAACCAGTGCCTTGACC+AGG | + | chr6_1:90477082-90477101 | None:intergenic | 55.0% | |
!! | TGGTCAAGGCACTGGTTCAC+TGG | - | chr6_1:90477081-90477100 | Msa0897890:intron | 55.0% |
!! | GGTGGGCTAAACTGGTTCAG+CGG | - | chr6_1:90477592-90477611 | Msa0897890:intron | 55.0% |
! | TGTGACTCGGCAAGGTCAGT+GGG | + | chr6_1:90477622-90477641 | None:intergenic | 55.0% |
AGCTGAAACCCGGTGTGACT+CGG | + | chr6_1:90477635-90477654 | None:intergenic | 55.0% | |
! | GGATTTGAGGTTGGGTGGAG+TGG | - | chr6_1:90478729-90478748 | Msa0897890:intron | 55.0% |
TGAGCCGACCTCACTTAGTG+GGG | + | chr6_1:90476137-90476156 | None:intergenic | 55.0% | |
AGCCTCCGAATTCTCAGGGA+CGG | + | chr6_1:90476378-90476397 | None:intergenic | 55.0% | |
TCCCTGAGAATTCGGAGGCT+CGG | - | chr6_1:90476378-90476397 | Msa0897890:CDS | 55.0% | |
ACCAGGTCGATCACCTGTCA+GGG | + | chr6_1:90477065-90477084 | None:intergenic | 55.0% | |
ACAGGTGATCGACCTGGTCA+AGG | - | chr6_1:90477067-90477086 | Msa0897890:intron | 55.0% | |
AGTGAACCAGTGCCTTGACC+AGG | + | chr6_1:90477082-90477101 | None:intergenic | 55.0% | |
!! | TGGTCAAGGCACTGGTTCAC+TGG | - | chr6_1:90477081-90477100 | Msa0897890:intron | 55.0% |
!! | GGTGGGCTAAACTGGTTCAG+CGG | - | chr6_1:90477592-90477611 | Msa0897890:intron | 55.0% |
! | TGTGACTCGGCAAGGTCAGT+GGG | + | chr6_1:90477622-90477641 | None:intergenic | 55.0% |
AGCTGAAACCCGGTGTGACT+CGG | + | chr6_1:90477635-90477654 | None:intergenic | 55.0% | |
! | GGATTTGAGGTTGGGTGGAG+TGG | - | chr6_1:90478729-90478748 | Msa0897890:intron | 55.0% |
CAGGGCCGTCCCTGAGAATT+CGG | - | chr6_1:90476370-90476389 | Msa0897890:CDS | 60.0% | |
GCCGAGCCTCCGAATTCTCA+GGG | + | chr6_1:90476382-90476401 | None:intergenic | 60.0% | |
AGCCGAGCCTCCGAATTCTC+AGG | + | chr6_1:90476383-90476402 | None:intergenic | 60.0% | |
AGAATTCGGAGGCTCGGCTC+TGG | - | chr6_1:90476384-90476403 | Msa0897890:CDS | 60.0% | |
GAATTCGGAGGCTCGGCTCT+GGG | - | chr6_1:90476385-90476404 | Msa0897890:CDS | 60.0% | |
! | AAGGGGGTGCAAACAGCGCA+TGG | + | chr6_1:90476612-90476631 | None:intergenic | 60.0% |
GAGCTGTTTGCACCCCCTCA+AGG | - | chr6_1:90476720-90476739 | Msa0897890:CDS | 60.0% | |
TGTTTGCACCCCCTCAAGGC+CGG | - | chr6_1:90476724-90476743 | Msa0897890:CDS | 60.0% | |
TAATCAGGGCCGGCCTTGAG+GGG | + | chr6_1:90476736-90476755 | None:intergenic | 60.0% | |
GTAATCAGGGCCGGCCTTGA+GGG | + | chr6_1:90476737-90476756 | None:intergenic | 60.0% | |
TGTAATCAGGGCCGGCCTTG+AGG | + | chr6_1:90476738-90476757 | None:intergenic | 60.0% | |
TCAAGGCCGGCCCTGATTAC+AGG | - | chr6_1:90476737-90476756 | Msa0897890:CDS | 60.0% | |
GCCGGCCCTGATTACAGGTA+TGG | - | chr6_1:90476742-90476761 | Msa0897890:CDS | 60.0% | |
ACCCTGACAGGTGATCGACC+TGG | - | chr6_1:90477061-90477080 | Msa0897890:intron | 60.0% | |
GACCAGGTCGATCACCTGTC+AGG | + | chr6_1:90477066-90477085 | None:intergenic | 60.0% | |
GATCGACCTGGTCAAGGCAC+TGG | - | chr6_1:90477073-90477092 | Msa0897890:intron | 60.0% | |
! | GTGTGACTCGGCAAGGTCAG+TGG | + | chr6_1:90477623-90477642 | None:intergenic | 60.0% |
CTGACCTTGCCGAGTCACAC+CGG | - | chr6_1:90477623-90477642 | Msa0897890:intron | 60.0% | |
TGACCTTGCCGAGTCACACC+GGG | - | chr6_1:90477624-90477643 | Msa0897890:intron | 60.0% | |
! | AAACCCGGTGTGACTCGGCA+AGG | + | chr6_1:90477630-90477649 | None:intergenic | 60.0% |
GAGTCACACCGGGTTTCAGC+TGG | - | chr6_1:90477634-90477653 | Msa0897890:intron | 60.0% | |
! | AACCGGAGGGTGCAGCTGTT+CGG | + | chr6_1:90477689-90477708 | None:intergenic | 60.0% |
TGAGGTTGGGTGGAGTGGTG+TGG | - | chr6_1:90478734-90478753 | Msa0897890:intron | 60.0% | |
GAGGTTGGGTGGAGTGGTGT+GGG | - | chr6_1:90478735-90478754 | Msa0897890:intron | 60.0% | |
CAGGGCCGTCCCTGAGAATT+CGG | - | chr6_1:90476370-90476389 | Msa0897890:CDS | 60.0% | |
GCCGAGCCTCCGAATTCTCA+GGG | + | chr6_1:90476382-90476401 | None:intergenic | 60.0% | |
AGCCGAGCCTCCGAATTCTC+AGG | + | chr6_1:90476383-90476402 | None:intergenic | 60.0% | |
AGAATTCGGAGGCTCGGCTC+TGG | - | chr6_1:90476384-90476403 | Msa0897890:CDS | 60.0% | |
GAATTCGGAGGCTCGGCTCT+GGG | - | chr6_1:90476385-90476404 | Msa0897890:CDS | 60.0% | |
! | AAGGGGGTGCAAACAGCGCA+TGG | + | chr6_1:90476612-90476631 | None:intergenic | 60.0% |
GAGCTGTTTGCACCCCCTCA+AGG | - | chr6_1:90476720-90476739 | Msa0897890:CDS | 60.0% | |
TGTTTGCACCCCCTCAAGGC+CGG | - | chr6_1:90476724-90476743 | Msa0897890:CDS | 60.0% | |
TAATCAGGGCCGGCCTTGAG+GGG | + | chr6_1:90476736-90476755 | None:intergenic | 60.0% | |
GTAATCAGGGCCGGCCTTGA+GGG | + | chr6_1:90476737-90476756 | None:intergenic | 60.0% | |
TGTAATCAGGGCCGGCCTTG+AGG | + | chr6_1:90476738-90476757 | None:intergenic | 60.0% | |
TCAAGGCCGGCCCTGATTAC+AGG | - | chr6_1:90476737-90476756 | Msa0897890:CDS | 60.0% | |
GCCGGCCCTGATTACAGGTA+TGG | - | chr6_1:90476742-90476761 | Msa0897890:CDS | 60.0% | |
ACCCTGACAGGTGATCGACC+TGG | - | chr6_1:90477061-90477080 | Msa0897890:intron | 60.0% | |
GACCAGGTCGATCACCTGTC+AGG | + | chr6_1:90477066-90477085 | None:intergenic | 60.0% | |
GATCGACCTGGTCAAGGCAC+TGG | - | chr6_1:90477073-90477092 | Msa0897890:intron | 60.0% | |
! | GTGTGACTCGGCAAGGTCAG+TGG | + | chr6_1:90477623-90477642 | None:intergenic | 60.0% |
CTGACCTTGCCGAGTCACAC+CGG | - | chr6_1:90477623-90477642 | Msa0897890:intron | 60.0% | |
TGACCTTGCCGAGTCACACC+GGG | - | chr6_1:90477624-90477643 | Msa0897890:intron | 60.0% | |
! | AAACCCGGTGTGACTCGGCA+AGG | + | chr6_1:90477630-90477649 | None:intergenic | 60.0% |
GAGTCACACCGGGTTTCAGC+TGG | - | chr6_1:90477634-90477653 | Msa0897890:intron | 60.0% | |
! | AACCGGAGGGTGCAGCTGTT+CGG | + | chr6_1:90477689-90477708 | None:intergenic | 60.0% |
TGAGGTTGGGTGGAGTGGTG+TGG | - | chr6_1:90478734-90478753 | Msa0897890:intron | 60.0% | |
GAGGTTGGGTGGAGTGGTGT+GGG | - | chr6_1:90478735-90478754 | Msa0897890:intron | 60.0% | |
GGCCGTCCCTGAGAATTCGG+AGG | - | chr6_1:90476373-90476392 | Msa0897890:CDS | 65.0% | |
TGGAGGCCCATCCTTGAGGG+AGG | - | chr6_1:90476685-90476704 | Msa0897890:CDS | 65.0% | |
GCTGGGCCTCCCTCAAGGAT+GGG | + | chr6_1:90476694-90476713 | None:intergenic | 65.0% | |
AGCTGGGCCTCCCTCAAGGA+TGG | + | chr6_1:90476695-90476714 | None:intergenic | 65.0% | |
TCCTTGAGGGAGGCCCAGCT+AGG | - | chr6_1:90476695-90476714 | Msa0897890:CDS | 65.0% | |
ACCTAGCTGGGCCTCCCTCA+AGG | + | chr6_1:90476699-90476718 | None:intergenic | 65.0% | |
AATCAGGGCCGGCCTTGAGG+GGG | + | chr6_1:90476735-90476754 | None:intergenic | 65.0% | |
!! | ACGGGTCGGGTGGGCTAAAC+TGG | - | chr6_1:90477584-90477603 | Msa0897890:intron | 65.0% |
GACTCGGCAAGGTCAGTGGG+CGG | + | chr6_1:90477619-90477638 | None:intergenic | 65.0% | |
GTTCGGGCAGGCTACTGGAC+CGG | + | chr6_1:90477672-90477691 | None:intergenic | 65.0% | |
CAGCTGTTCGGGCAGGCTAC+TGG | + | chr6_1:90477677-90477696 | None:intergenic | 65.0% | |
! | ACCGGAGGGTGCAGCTGTTC+GGG | + | chr6_1:90477688-90477707 | None:intergenic | 65.0% |
AAAACCCCGACCGACCCGGT+TGG | + | chr6_1:90477718-90477737 | None:intergenic | 65.0% | |
GGCCGTCCCTGAGAATTCGG+AGG | - | chr6_1:90476373-90476392 | Msa0897890:CDS | 65.0% | |
TGGAGGCCCATCCTTGAGGG+AGG | - | chr6_1:90476685-90476704 | Msa0897890:CDS | 65.0% | |
GCTGGGCCTCCCTCAAGGAT+GGG | + | chr6_1:90476694-90476713 | None:intergenic | 65.0% | |
AGCTGGGCCTCCCTCAAGGA+TGG | + | chr6_1:90476695-90476714 | None:intergenic | 65.0% | |
TCCTTGAGGGAGGCCCAGCT+AGG | - | chr6_1:90476695-90476714 | Msa0897890:CDS | 65.0% | |
ACCTAGCTGGGCCTCCCTCA+AGG | + | chr6_1:90476699-90476718 | None:intergenic | 65.0% | |
AATCAGGGCCGGCCTTGAGG+GGG | + | chr6_1:90476735-90476754 | None:intergenic | 65.0% | |
!! | ACGGGTCGGGTGGGCTAAAC+TGG | - | chr6_1:90477584-90477603 | Msa0897890:intron | 65.0% |
GACTCGGCAAGGTCAGTGGG+CGG | + | chr6_1:90477619-90477638 | None:intergenic | 65.0% | |
GTTCGGGCAGGCTACTGGAC+CGG | + | chr6_1:90477672-90477691 | None:intergenic | 65.0% | |
CAGCTGTTCGGGCAGGCTAC+TGG | + | chr6_1:90477677-90477696 | None:intergenic | 65.0% | |
! | ACCGGAGGGTGCAGCTGTTC+GGG | + | chr6_1:90477688-90477707 | None:intergenic | 65.0% |
AAAACCCCGACCGACCCGGT+TGG | + | chr6_1:90477718-90477737 | None:intergenic | 65.0% | |
! | GAGGGTGCAGCTGTTCGGGC+AGG | + | chr6_1:90477684-90477703 | None:intergenic | 70.0% |
GCCCGAACAGCTGCACCCTC+CGG | - | chr6_1:90477684-90477703 | Msa0897890:intron | 70.0% | |
CAGCTGCACCCTCCGGTTCC+CGG | - | chr6_1:90477691-90477710 | Msa0897890:intron | 70.0% | |
CGGTTGGACCGGGAACCGGA+GGG | + | chr6_1:90477702-90477721 | None:intergenic | 70.0% | |
CCTCCGGTTCCCGGTCCAAC+CGG | - | chr6_1:90477700-90477719 | Msa0897890:intron | 70.0% | |
CTCCGGTTCCCGGTCCAACC+GGG | - | chr6_1:90477701-90477720 | Msa0897890:intron | 70.0% | |
GACCCGGTTGGACCGGGAAC+CGG | + | chr6_1:90477706-90477725 | None:intergenic | 70.0% | |
GGTTCCCGGTCCAACCGGGT+CGG | - | chr6_1:90477705-90477724 | Msa0897890:intron | 70.0% | |
! | GAGGGTGCAGCTGTTCGGGC+AGG | + | chr6_1:90477684-90477703 | None:intergenic | 70.0% |
GCCCGAACAGCTGCACCCTC+CGG | - | chr6_1:90477684-90477703 | Msa0897890:intron | 70.0% | |
CAGCTGCACCCTCCGGTTCC+CGG | - | chr6_1:90477691-90477710 | Msa0897890:intron | 70.0% | |
CGGTTGGACCGGGAACCGGA+GGG | + | chr6_1:90477702-90477721 | None:intergenic | 70.0% | |
CCTCCGGTTCCCGGTCCAAC+CGG | - | chr6_1:90477700-90477719 | Msa0897890:intron | 70.0% | |
CTCCGGTTCCCGGTCCAACC+GGG | - | chr6_1:90477701-90477720 | Msa0897890:intron | 70.0% | |
GACCCGGTTGGACCGGGAAC+CGG | + | chr6_1:90477706-90477725 | None:intergenic | 70.0% | |
GGTTCCCGGTCCAACCGGGT+CGG | - | chr6_1:90477705-90477724 | Msa0897890:intron | 70.0% | |
CCGGTTGGACCGGGAACCGG+AGG | + | chr6_1:90477703-90477722 | None:intergenic | 75.0% | |
CCGACCGACCCGGTTGGACC+GGG | + | chr6_1:90477712-90477731 | None:intergenic | 75.0% | |
CCCGGTCCAACCGGGTCGGT+CGG | - | chr6_1:90477709-90477728 | Msa0897890:intron | 75.0% | |
CCCGACCGACCCGGTTGGAC+CGG | + | chr6_1:90477713-90477732 | None:intergenic | 75.0% | |
CCGGTCCAACCGGGTCGGTC+GGG | - | chr6_1:90477710-90477729 | Msa0897890:intron | 75.0% | |
CGGTCCAACCGGGTCGGTCG+GGG | - | chr6_1:90477711-90477730 | Msa0897890:intron | 75.0% | |
CCGGTTGGACCGGGAACCGG+AGG | + | chr6_1:90477703-90477722 | None:intergenic | 75.0% | |
CCGACCGACCCGGTTGGACC+GGG | + | chr6_1:90477712-90477731 | None:intergenic | 75.0% | |
CCCGGTCCAACCGGGTCGGT+CGG | - | chr6_1:90477709-90477728 | Msa0897890:intron | 75.0% | |
CCCGACCGACCCGGTTGGAC+CGG | + | chr6_1:90477713-90477732 | None:intergenic | 75.0% | |
CCGGTCCAACCGGGTCGGTC+GGG | - | chr6_1:90477710-90477729 | Msa0897890:intron | 75.0% | |
CGGTCCAACCGGGTCGGTCG+GGG | - | chr6_1:90477711-90477730 | Msa0897890:intron | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_1 | gene | 90475481 | 90479585 | 90475481 | ID=Msa0897890;Name=Msa0897890 |
chr6_1 | mRNA | 90475481 | 90479585 | 90475481 | ID=Msa0897890-mRNA-1;Parent=Msa0897890;Name=Msa0897890-mRNA-1;_AED=0.35;_eAED=0.35;_QI=133|1|0.66|1|0|0|3|0|313 |
chr6_1 | exon | 90475481 | 90475575 | 90475481 | ID=Msa0897890-mRNA-1:exon:15406;Parent=Msa0897890-mRNA-1 |
chr6_1 | exon | 90476187 | 90477055 | 90476187 | ID=Msa0897890-mRNA-1:exon:15405;Parent=Msa0897890-mRNA-1 |
chr6_1 | exon | 90479475 | 90479585 | 90479475 | ID=Msa0897890-mRNA-1:exon:15404;Parent=Msa0897890-mRNA-1 |
chr6_1 | five_prime_UTR | 90479475 | 90479585 | 90479475 | ID=Msa0897890-mRNA-1:five_prime_utr;Parent=Msa0897890-mRNA-1 |
chr6_1 | five_prime_UTR | 90477034 | 90477055 | 90477034 | ID=Msa0897890-mRNA-1:five_prime_utr;Parent=Msa0897890-mRNA-1 |
chr6_1 | CDS | 90476187 | 90477033 | 90476187 | ID=Msa0897890-mRNA-1:cds;Parent=Msa0897890-mRNA-1 |
chr6_1 | CDS | 90475481 | 90475575 | 90475481 | ID=Msa0897890-mRNA-1:cds;Parent=Msa0897890-mRNA-1 |
Gene Sequence |
Protein sequence |