AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0897890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0897890 MtrunA17_Chr6g0483851 62.595 262 91 2 15 272 5 263 3.24e-107 327
Msa0897890 MtrunA17_Chr6g0483791 63.985 261 87 2 16 272 1 258 8.33e-107 325
Msa0897890 MtrunA17_Chr6g0483921 59.387 261 100 2 16 272 1 259 6.26e-103 305
Msa0897890 MtrunA17_Chr7g0251131 27.381 252 158 7 22 267 1 233 2.46e-20 88.6
Msa0897890 MtrunA17_Chr8g0391231 28.269 283 172 13 25 294 5 269 2.92e-20 91.3
Msa0897890 MtrunA17_Chr7g0251011 24.910 277 183 7 28 298 10 267 1.26e-19 87.0
Msa0897890 MtrunA17_Chr8g0376061 30.045 223 132 10 58 271 34 241 3.16e-17 82.4
Msa0897890 MtrunA17_Chr6g0483901 28.571 210 122 8 60 256 47 241 3.30e-14 71.2
Msa0897890 MtrunA17_Chr6g0483911 26.357 258 152 11 37 275 8 246 4.53e-13 68.6
Msa0897890 MtrunA17_Chr6g0483801 25.541 231 140 9 56 273 37 248 2.39e-12 66.2
Msa0897890 MtrunA17_Chr7g0251061 29.130 230 126 13 60 273 47 255 1.32e-11 65.5
Msa0897890 MtrunA17_Chr6g0484051 37.398 123 62 4 60 181 49 157 2.11e-11 64.7
Msa0897890 MtrunA17_Chr7g0251121 27.481 262 156 12 20 267 3 244 2.84e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0897890 AT1G66930.2 30.380 237 142 9 44 267 240 466 5.23e-17 82.0
Msa0897890 AT1G66930.3 30.085 236 142 9 44 266 59 284 1.13e-16 80.9
Msa0897890 AT1G66930.1 30.085 236 142 9 44 266 59 284 1.14e-16 80.9
Msa0897890 AT1G67000.1 31.982 222 128 10 58 267 256 466 2.54e-15 77.0
Msa0897890 AT5G38260.1 27.376 263 146 12 24 267 11 247 2.72e-15 77.0
Msa0897890 AT1G18390.2 26.991 226 139 8 56 271 33 242 4.65e-15 76.3
Msa0897890 AT1G66880.3 29.907 214 116 9 57 261 33 221 2.78e-13 70.9
Msa0897890 AT1G66880.2 29.907 214 116 9 57 261 33 221 4.04e-13 70.5
Msa0897890 AT1G66880.2 25.100 251 146 10 36 267 239 466 9.81e-12 66.2
Msa0897890 AT1G66880.1 29.524 210 115 8 60 261 416 600 5.03e-13 70.1
Msa0897890 AT1G66880.1 25.991 227 133 9 60 267 635 845 8.30e-12 66.6
Msa0897890 AT1G66880.1 26.961 204 120 8 62 259 26 206 3.98e-11 64.3
Msa0897890 AT1G66910.2 25.751 233 138 8 57 267 38 257 1.47e-11 65.5
Msa0897890 AT1G66910.1 25.751 233 138 8 57 267 38 257 1.49e-11 65.5
Msa0897890 AT5G38210.3 25.112 223 141 8 57 267 20 228 1.87e-11 65.1
Msa0897890 AT5G38210.2 23.077 221 148 6 57 267 38 246 1.99e-11 65.1

Find 65 sgRNAs with CRISPR-Local

Find 580 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATTGTAAGGGACGATTTA+TGG 0.170227 6_1:-90476659 Msa0897890:CDS
GCGATATTAGCTACCCATTC+TGG 0.203275 6_1:-90476815 Msa0897890:CDS
ATTGGTTGATTTCAATGTTA+TGG 0.260052 6_1:-90476409 Msa0897890:CDS
TATGAAGGATGTGAAACTTT+TGG 0.265817 6_1:+90476706 None:intergenic
CCTAGTTTCAAGTGACAAAT+TGG 0.292169 6_1:-90476427 Msa0897890:CDS
ACCACATCTTGTGAACCTTT+TGG 0.312693 6_1:-90476852 Msa0897890:CDS
GCGAAAATGAAAATCATTCT+AGG 0.313685 6_1:-90475484 Msa0897890:CDS
TTCAGTTATGTGTCTCTTGC+CGG 0.319841 6_1:-90476223 Msa0897890:CDS
AACGTAGAGGAGTTTGAGTT+TGG 0.343075 6_1:+90476510 None:intergenic
TAGGTGAAGGATTTGAGGTT+GGG 0.354930 6_1:-90476323 Msa0897890:CDS
TTTAGGAAATATATGTAAAA+GGG 0.355653 6_1:-90477038 Msa0897890:intron
TCGCTTTGGAGCGTTCTTCT+CGG 0.377807 6_1:-90476989 Msa0897890:CDS
CAAGTGTATACTATTCTTGA+TGG 0.382085 6_1:+90479561 None:intergenic
AAGAATAGTATCACCTTTCC+TGG 0.384015 6_1:-90476381 Msa0897890:CDS
TGAGGTTGGGTGGAGTGGTG+TGG 0.400616 6_1:-90476310 Msa0897890:CDS
GAGGTTGGGTGGAGTGGTGT+GGG 0.406803 6_1:-90476309 Msa0897890:CDS
GAGACATTTGATTTATATGA+AGG 0.409674 6_1:+90476691 None:intergenic
TGACAATCAAGCTTGAAGTT+TGG 0.421038 6_1:+90476759 None:intergenic
GTCAATGAATTCTTCAAGCC+AGG 0.429363 6_1:+90476363 None:intergenic
TGAAGTGATTTCTTGCCTCA+TGG 0.433114 6_1:-90476472 Msa0897890:CDS
GGATTTGAGGTTGGGTGGAG+TGG 0.435864 6_1:-90476315 Msa0897890:CDS
AAAGAAAACGAAGGTAGAAA+AGG 0.443625 6_1:+90476954 None:intergenic
CCAATTTGTCACTTGAAACT+AGG 0.446574 6_1:+90476427 None:intergenic
TTTACATCAATATATTGCTT+CGG 0.447673 6_1:+90476606 None:intergenic
ACGTCTTAGTTGCCATCAAA+AGG 0.460704 6_1:-90479488 Msa0897890:five_prime_UTR
TTTGGATGACCGCAATAACT+TGG 0.483437 6_1:+90476777 None:intergenic
GACTTAAGAAGAAGAGTGGA+AGG 0.485625 6_1:+90476910 None:intergenic
CTGAAATTTCCACATCCAAA+AGG 0.487786 6_1:+90476837 None:intergenic
TTAGGTGAAGGATTTGAGGT+TGG 0.490349 6_1:-90476324 Msa0897890:CDS
AGAAACTAGGAACATCGCTT+TGG 0.491158 6_1:-90477003 Msa0897890:CDS
GATGACCGCAATAACTTGGT+TGG 0.500075 6_1:+90476781 None:intergenic
GTGAAGGATTTGAGGTTGGG+TGG 0.502660 6_1:-90476320 Msa0897890:CDS
AATTGACTTAAGAAGAAGAG+TGG 0.504168 6_1:+90476906 None:intergenic
TGTGGTGGTTGCATGAAATC+TGG 0.506044 6_1:-90476276 Msa0897890:CDS
GATGGAGTAACATCATCAAA+TGG 0.527046 6_1:-90476186 Msa0897890:intron
CCATCTGCAATGGATTTCTC+CGG 0.533130 6_1:+90476204 None:intergenic
GCACAGAGAAGCATTTGAGC+AGG 0.540476 6_1:-90475510 Msa0897890:CDS
TTAGGAAATATATGTAAAAG+GGG 0.545725 6_1:-90477037 Msa0897890:intron
GGGAAATGCTAGAAGAAACT+AGG 0.548819 6_1:-90477016 Msa0897890:exon
CCGGAGAAATCCATTGCAGA+TGG 0.552731 6_1:-90476204 Msa0897890:CDS
GGATGTTAAGACTCCAGAAT+GGG 0.565498 6_1:+90476802 None:intergenic
GTAGGAATCTGTTAGAACAT+TGG 0.566351 6_1:+90475553 None:intergenic
AACGAAGGTAGAAAAGGAAG+CGG 0.568895 6_1:+90476960 None:intergenic
TCCAAAAGGTTCACAAGATG+TGG 0.579964 6_1:+90476851 None:intergenic
TGATGTTACTCCATCTGCAA+TGG 0.583421 6_1:+90476194 None:intergenic
TTCAAGCTTGATTGTCAACA+TGG 0.587950 6_1:-90476753 Msa0897890:CDS
GTGATTTCTTGCCTCATGGA+GGG 0.587986 6_1:-90476468 Msa0897890:CDS
TAGGAAATATATGTAAAAGG+GGG 0.593700 6_1:-90477036 Msa0897890:five_prime_UTR
TGGATGTTAAGACTCCAGAA+TGG 0.599363 6_1:+90476801 None:intergenic
TGAATTCTTCAAGCCAGGAA+AGG 0.602825 6_1:+90476368 None:intergenic
AACATCCAACCAAGTTATTG+CGG 0.605269 6_1:-90476786 Msa0897890:CDS
CAATAGTAGAAACATCATGT+AGG 0.608568 6_1:+90475535 None:intergenic
AAAAGGTTCACAAGATGTGG+TGG 0.620771 6_1:+90476854 None:intergenic
ATCAAAAGGCTTAATTAACA+AGG 0.630960 6_1:-90479474 Msa0897890:intron
GAATTCATTGACAAATGACT+CGG 0.637714 6_1:-90476352 Msa0897890:CDS
AGTGATTTCTTGCCTCATGG+AGG 0.643094 6_1:-90476469 Msa0897890:CDS
ATGAAATCTGGTAGGAAATG+CGG 0.644240 6_1:-90476264 Msa0897890:CDS
GAAGGTAGAAAAGGAAGCGG+AGG 0.652700 6_1:+90476963 None:intergenic
TATACTCTATTGTACGAGTG+TGG 0.664109 6_1:-90476540 Msa0897890:CDS
AACTTCAGAACTCAACGTAG+AGG 0.677319 6_1:+90476497 None:intergenic
GTGGTTGCATGAAATCTGGT+AGG 0.685356 6_1:-90476272 Msa0897890:CDS
GGTGGACACAGCATTAGTAG+TGG 0.686937 6_1:+90476872 None:intergenic
GGTGTGGGAGAAGAAATATG+TGG 0.752804 6_1:-90476294 Msa0897890:CDS
GTGGGAGAAGAAATATGTGG+TGG 0.753774 6_1:-90476291 Msa0897890:CDS
TTGATGATGAAAGAAAACGA+AGG 0.776756 6_1:+90476945 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAAATATGCTTTAAA+AGG - chr6_1:90476970-90476989 Msa0897890:CDS 10.0%
!!! TTTTAAAATATGCTTTAAAA+GGG - chr6_1:90476971-90476990 Msa0897890:CDS 10.0%
!!! ATAAATATTTTTATATAGAC+CGG + chr6_1:90477147-90477166 None:intergenic 10.0%
!! AAAAAAAAAAAAAAGGAAAA+CGG - chr6_1:90477565-90477584 Msa0897890:intron 10.0%
!!! TTTTGTTGAAATAAAAAATT+GGG + chr6_1:90477752-90477771 None:intergenic 10.0%
!!! TTTTTGTTGAAATAAAAAAT+TGG + chr6_1:90477753-90477772 None:intergenic 10.0%
!!! TTTTTAAAATATGCTTTAAA+AGG - chr6_1:90476970-90476989 Msa0897890:CDS 10.0%
!!! TTTTAAAATATGCTTTAAAA+GGG - chr6_1:90476971-90476990 Msa0897890:CDS 10.0%
!!! ATAAATATTTTTATATAGAC+CGG + chr6_1:90477147-90477166 None:intergenic 10.0%
!! AAAAAAAAAAAAAAGGAAAA+CGG - chr6_1:90477565-90477584 Msa0897890:intron 10.0%
!!! TTTTGTTGAAATAAAAAATT+GGG + chr6_1:90477752-90477771 None:intergenic 10.0%
!!! TTTTTGTTGAAATAAAAAAT+TGG + chr6_1:90477753-90477772 None:intergenic 10.0%
!!! TTTAAAGCTTTTTTATATCT+TGG - chr6_1:90475657-90475676 Msa0897890:intron 15.0%
!!! TAAATATTTTTATATAGACC+GGG + chr6_1:90477146-90477165 None:intergenic 15.0%
!!! TTCATTCATAATGTAATTTT+GGG + chr6_1:90477172-90477191 None:intergenic 15.0%
!!! TTTCATTCATAATGTAATTT+TGG + chr6_1:90477173-90477192 None:intergenic 15.0%
!! AATATTAGAATTTATTTGTG+AGG + chr6_1:90477371-90477390 None:intergenic 15.0%
!!! TAAGTCTATTCTTTTTTTTT+TGG + chr6_1:90477489-90477508 None:intergenic 15.0%
!! CAAGTCAAAAAAAAAAAAAA+AGG - chr6_1:90477558-90477577 Msa0897890:intron 15.0%
!! AAAAAAAAAAAAAGGAAAAC+GGG - chr6_1:90477566-90477585 Msa0897890:intron 15.0%
!! ATTATGAAGAAAATAACAAA+TGG + chr6_1:90477895-90477914 None:intergenic 15.0%
!!! CTTGTATTTTAACTTTAAAT+AGG - chr6_1:90477916-90477935 Msa0897890:intron 15.0%
!!! TTTTAGGAAATATATGTAAA+AGG - chr6_1:90478005-90478024 Msa0897890:intron 15.0%
!! TTTAGGAAATATATGTAAAA+GGG - chr6_1:90478006-90478025 Msa0897890:intron 15.0%
!!! TTTAAAGCTTTTTTATATCT+TGG - chr6_1:90475657-90475676 Msa0897890:intron 15.0%
!!! TAAATATTTTTATATAGACC+GGG + chr6_1:90477146-90477165 None:intergenic 15.0%
!!! TTCATTCATAATGTAATTTT+GGG + chr6_1:90477172-90477191 None:intergenic 15.0%
!!! TTTCATTCATAATGTAATTT+TGG + chr6_1:90477173-90477192 None:intergenic 15.0%
!! AATATTAGAATTTATTTGTG+AGG + chr6_1:90477371-90477390 None:intergenic 15.0%
!!! TAAGTCTATTCTTTTTTTTT+TGG + chr6_1:90477489-90477508 None:intergenic 15.0%
!! CAAGTCAAAAAAAAAAAAAA+AGG - chr6_1:90477558-90477577 Msa0897890:intron 15.0%
!! AAAAAAAAAAAAAGGAAAAC+GGG - chr6_1:90477566-90477585 Msa0897890:intron 15.0%
!! ATTATGAAGAAAATAACAAA+TGG + chr6_1:90477895-90477914 None:intergenic 15.0%
!!! CTTGTATTTTAACTTTAAAT+AGG - chr6_1:90477916-90477935 Msa0897890:intron 15.0%
!!! TTTTAGGAAATATATGTAAA+AGG - chr6_1:90478005-90478024 Msa0897890:intron 15.0%
!! TTTAGGAAATATATGTAAAA+GGG - chr6_1:90478006-90478025 Msa0897890:intron 15.0%
!!! TTGCAACTAGTTTATTTTTA+AGG - chr6_1:90475810-90475829 Msa0897890:intron 20.0%
!!! AACTAGTTTATTTTTAAGGT+GGG - chr6_1:90475814-90475833 Msa0897890:intron 20.0%
!! ACTAAGTGTATCTATTAATT+TGG - chr6_1:90475860-90475879 Msa0897890:intron 20.0%
!! CTAAGTGTATCTATTAATTT+GGG - chr6_1:90475861-90475880 Msa0897890:intron 20.0%
!!! TAAGTGTATCTATTAATTTG+GGG - chr6_1:90475862-90475881 Msa0897890:intron 20.0%
!!! ATTGTTGATAAATAGATCAT+AGG + chr6_1:90476000-90476019 None:intergenic 20.0%
!!! AAGTAGATTTTTCTTTAACT+AGG + chr6_1:90476216-90476235 None:intergenic 20.0%
!! TTGTAAGTATGTAAAATTCT+AGG - chr6_1:90476235-90476254 Msa0897890:CDS 20.0%
!! TGCATATAACTTTAAACTAA+GGG + chr6_1:90476824-90476843 None:intergenic 20.0%
!! TTAGGAAATATATGTAAAAG+GGG - chr6_1:90478007-90478026 Msa0897890:intron 20.0%
!! TTTACATCAATATATTGCTT+CGG + chr6_1:90478441-90478460 None:intergenic 20.0%
!!! ACATATTCATAAGATGTTTT+AGG - chr6_1:90478971-90478990 Msa0897890:intron 20.0%
!!! TATTTTAAGAATGAGGATAA+AGG + chr6_1:90479143-90479162 None:intergenic 20.0%
!!! GAAATCATATTTTAAGAATG+AGG + chr6_1:90479150-90479169 None:intergenic 20.0%
!!! TTGCAACTAGTTTATTTTTA+AGG - chr6_1:90475810-90475829 Msa0897890:intron 20.0%
!!! AACTAGTTTATTTTTAAGGT+GGG - chr6_1:90475814-90475833 Msa0897890:intron 20.0%
!! ACTAAGTGTATCTATTAATT+TGG - chr6_1:90475860-90475879 Msa0897890:intron 20.0%
!! CTAAGTGTATCTATTAATTT+GGG - chr6_1:90475861-90475880 Msa0897890:intron 20.0%
!!! TAAGTGTATCTATTAATTTG+GGG - chr6_1:90475862-90475881 Msa0897890:intron 20.0%
!!! ATTGTTGATAAATAGATCAT+AGG + chr6_1:90476000-90476019 None:intergenic 20.0%
!!! AAGTAGATTTTTCTTTAACT+AGG + chr6_1:90476216-90476235 None:intergenic 20.0%
!! TTGTAAGTATGTAAAATTCT+AGG - chr6_1:90476235-90476254 Msa0897890:CDS 20.0%
!! TGCATATAACTTTAAACTAA+GGG + chr6_1:90476824-90476843 None:intergenic 20.0%
!! TTAGGAAATATATGTAAAAG+GGG - chr6_1:90478007-90478026 Msa0897890:intron 20.0%
!! TTTACATCAATATATTGCTT+CGG + chr6_1:90478441-90478460 None:intergenic 20.0%
!!! ACATATTCATAAGATGTTTT+AGG - chr6_1:90478971-90478990 Msa0897890:intron 20.0%
!!! TATTTTAAGAATGAGGATAA+AGG + chr6_1:90479143-90479162 None:intergenic 20.0%
!!! GAAATCATATTTTAAGAATG+AGG + chr6_1:90479150-90479169 None:intergenic 20.0%
!! TTGTTAATTAAGCCTTTTGA+TGG + chr6_1:90475571-90475590 None:intergenic 25.0%
! ATCAAAAGGCTTAATTAACA+AGG - chr6_1:90475570-90475589 Msa0897890:intron 25.0%
!! TGAGAAAGTGTATATCATAT+AGG + chr6_1:90475772-90475791 None:intergenic 25.0%
! TATATGATATACACTTTCTC+AGG - chr6_1:90475771-90475790 Msa0897890:intron 25.0%
!!! CAACTAGTTTATTTTTAAGG+TGG - chr6_1:90475813-90475832 Msa0897890:intron 25.0%
!!! AATTATTTTGTAGTCCAACA+AGG - chr6_1:90475890-90475909 Msa0897890:intron 25.0%
!!! ATTATTTTGTAGTCCAACAA+GGG - chr6_1:90475891-90475910 Msa0897890:intron 25.0%
! AAAAAACTATTTACACAGCA+GGG + chr6_1:90476080-90476099 None:intergenic 25.0%
! TAAAAAACTATTTACACAGC+AGG + chr6_1:90476081-90476100 None:intergenic 25.0%
! AGTGGAATGATATTATATAG+AGG + chr6_1:90476110-90476129 None:intergenic 25.0%
! AAATAATTACCGTATACATG+AGG - chr6_1:90476527-90476546 Msa0897890:CDS 25.0%
!!! TTTAATTTTCCTCTTGCTTT+TGG + chr6_1:90476568-90476587 None:intergenic 25.0%
!!! TACTGGGTACAATTTTTTTT+TGG - chr6_1:90476665-90476684 Msa0897890:CDS 25.0%
! ATATAACTTTAAACTAAGGG+TGG + chr6_1:90476821-90476840 None:intergenic 25.0%
! GTGCATATAACTTTAAACTA+AGG + chr6_1:90476825-90476844 None:intergenic 25.0%
!!! ATAGATTTTTTTTCCTACCT+TGG - chr6_1:90476873-90476892 Msa0897890:CDS 25.0%
!!! ATTTTTTGTAGAAATAGCCA+AGG + chr6_1:90476893-90476912 None:intergenic 25.0%
! AAGAATTAGAAACAACATAC+TGG - chr6_1:90476937-90476956 Msa0897890:CDS 25.0%
!!! AGGGTTTTAAAACATTGATT+GGG + chr6_1:90477046-90477065 None:intergenic 25.0%
! TGAATGAGCTAATTTGAATT+TGG + chr6_1:90477323-90477342 None:intergenic 25.0%
!! TAGTATGTTCTAAACATTGT+TGG - chr6_1:90477411-90477430 Msa0897890:intron 25.0%
! AAGAATCTTGCATATATGAA+TGG + chr6_1:90477831-90477850 None:intergenic 25.0%
! TAGGAAATATATGTAAAAGG+GGG - chr6_1:90478008-90478027 Msa0897890:intron 25.0%
!! GAGACATTTGATTTATATGA+AGG + chr6_1:90478356-90478375 None:intergenic 25.0%
!! ATTGGTTGATTTCAATGTTA+TGG - chr6_1:90478635-90478654 Msa0897890:intron 25.0%
! GAAGAATCTAATAAAATGTC+AGG + chr6_1:90478897-90478916 None:intergenic 25.0%
! GAATATGTGATAAACTAGTT+TGG + chr6_1:90478959-90478978 None:intergenic 25.0%
!!! TAAGATGTTTTAGGATTTTG+TGG - chr6_1:90478980-90478999 Msa0897890:intron 25.0%
!!! GATTTTGTGGATTGATTTAA+TGG - chr6_1:90478993-90479012 Msa0897890:intron 25.0%
!! TTGTTAATTAAGCCTTTTGA+TGG + chr6_1:90475571-90475590 None:intergenic 25.0%
! ATCAAAAGGCTTAATTAACA+AGG - chr6_1:90475570-90475589 Msa0897890:intron 25.0%
!! TGAGAAAGTGTATATCATAT+AGG + chr6_1:90475772-90475791 None:intergenic 25.0%
! TATATGATATACACTTTCTC+AGG - chr6_1:90475771-90475790 Msa0897890:intron 25.0%
!!! CAACTAGTTTATTTTTAAGG+TGG - chr6_1:90475813-90475832 Msa0897890:intron 25.0%
!!! AATTATTTTGTAGTCCAACA+AGG - chr6_1:90475890-90475909 Msa0897890:intron 25.0%
!!! ATTATTTTGTAGTCCAACAA+GGG - chr6_1:90475891-90475910 Msa0897890:intron 25.0%
! AAAAAACTATTTACACAGCA+GGG + chr6_1:90476080-90476099 None:intergenic 25.0%
! TAAAAAACTATTTACACAGC+AGG + chr6_1:90476081-90476100 None:intergenic 25.0%
! AGTGGAATGATATTATATAG+AGG + chr6_1:90476110-90476129 None:intergenic 25.0%
! AAATAATTACCGTATACATG+AGG - chr6_1:90476527-90476546 Msa0897890:CDS 25.0%
!!! TTTAATTTTCCTCTTGCTTT+TGG + chr6_1:90476568-90476587 None:intergenic 25.0%
!!! TACTGGGTACAATTTTTTTT+TGG - chr6_1:90476665-90476684 Msa0897890:CDS 25.0%
! ATATAACTTTAAACTAAGGG+TGG + chr6_1:90476821-90476840 None:intergenic 25.0%
! GTGCATATAACTTTAAACTA+AGG + chr6_1:90476825-90476844 None:intergenic 25.0%
!!! ATAGATTTTTTTTCCTACCT+TGG - chr6_1:90476873-90476892 Msa0897890:CDS 25.0%
!!! ATTTTTTGTAGAAATAGCCA+AGG + chr6_1:90476893-90476912 None:intergenic 25.0%
! AAGAATTAGAAACAACATAC+TGG - chr6_1:90476937-90476956 Msa0897890:CDS 25.0%
!!! AGGGTTTTAAAACATTGATT+GGG + chr6_1:90477046-90477065 None:intergenic 25.0%
! TGAATGAGCTAATTTGAATT+TGG + chr6_1:90477323-90477342 None:intergenic 25.0%
!! TAGTATGTTCTAAACATTGT+TGG - chr6_1:90477411-90477430 Msa0897890:intron 25.0%
! AAGAATCTTGCATATATGAA+TGG + chr6_1:90477831-90477850 None:intergenic 25.0%
! TAGGAAATATATGTAAAAGG+GGG - chr6_1:90478008-90478027 Msa0897890:intron 25.0%
!! GAGACATTTGATTTATATGA+AGG + chr6_1:90478356-90478375 None:intergenic 25.0%
!! ATTGGTTGATTTCAATGTTA+TGG - chr6_1:90478635-90478654 Msa0897890:intron 25.0%
! GAAGAATCTAATAAAATGTC+AGG + chr6_1:90478897-90478916 None:intergenic 25.0%
! GAATATGTGATAAACTAGTT+TGG + chr6_1:90478959-90478978 None:intergenic 25.0%
!!! TAAGATGTTTTAGGATTTTG+TGG - chr6_1:90478980-90478999 Msa0897890:intron 25.0%
!!! GATTTTGTGGATTGATTTAA+TGG - chr6_1:90478993-90479012 Msa0897890:intron 25.0%
CAAGTGTATACTATTCTTGA+TGG + chr6_1:90475486-90475505 None:intergenic 30.0%
! CAAGAGAAACTTGAGTTTTA+CGG - chr6_1:90475517-90475536 Msa0897890:CDS 30.0%
!!! TAGTTTATTTTTAAGGTGGG+CGG - chr6_1:90475817-90475836 Msa0897890:intron 30.0%
!! TTATTTTGTAGTCCAACAAG+GGG - chr6_1:90475892-90475911 Msa0897890:intron 30.0%
! CGGTAATTATTTTCACCTAT+GGG + chr6_1:90476519-90476538 None:intergenic 30.0%
! ACGGTAATTATTTTCACCTA+TGG + chr6_1:90476520-90476539 None:intergenic 30.0%
TATACTATCCTGCAATAAAG+GGG + chr6_1:90476629-90476648 None:intergenic 30.0%
GTATACTATCCTGCAATAAA+GGG + chr6_1:90476630-90476649 None:intergenic 30.0%
AGTATACTATCCTGCAATAA+AGG + chr6_1:90476631-90476650 None:intergenic 30.0%
!!! TGGGTACAATTTTTTTTTGG+AGG - chr6_1:90476668-90476687 Msa0897890:CDS 30.0%
AAATTCCATACCTGTAATCA+GGG + chr6_1:90476750-90476769 None:intergenic 30.0%
TAATGCTGCAAACAAACATA+TGG - chr6_1:90476776-90476795 Msa0897890:CDS 30.0%
!!! CAGGGTTTTAAAACATTGAT+TGG + chr6_1:90477047-90477066 None:intergenic 30.0%
GAGCTAATTTGAATTTGGAT+TGG + chr6_1:90477318-90477337 None:intergenic 30.0%
ACTATGTTTCGAACTTACTT+GGG + chr6_1:90477516-90477535 None:intergenic 30.0%
AAAAAAAAAGGAAAACGGGT+CGG - chr6_1:90477570-90477589 Msa0897890:intron 30.0%
TGACTATCAATTTCGTAGAT+AGG - chr6_1:90477859-90477878 Msa0897890:intron 30.0%
GACTATCAATTTCGTAGATA+GGG - chr6_1:90477860-90477879 Msa0897890:intron 30.0%
GTAACATATTGCTGCAAATT+TGG + chr6_1:90477946-90477965 None:intergenic 30.0%
! CTGATACACATTCTGATTTT+AGG - chr6_1:90477989-90478008 Msa0897890:intron 30.0%
AAAGAAAACGAAGGTAGAAA+AGG + chr6_1:90478093-90478112 None:intergenic 30.0%
!! TTGATGATGAAAGAAAACGA+AGG + chr6_1:90478102-90478121 None:intergenic 30.0%
! AATTGACTTAAGAAGAAGAG+TGG + chr6_1:90478141-90478160 None:intergenic 30.0%
! ATGAAGGATGTGAAACTTTT+GGG + chr6_1:90478340-90478359 None:intergenic 30.0%
! TATGAAGGATGTGAAACTTT+TGG + chr6_1:90478341-90478360 None:intergenic 30.0%
! ATCAAATGTCTCAACTTTTG+AGG - chr6_1:90478364-90478383 Msa0897890:intron 30.0%
!! TCAACTTTTGAGGATTGTAA+GGG - chr6_1:90478374-90478393 Msa0897890:intron 30.0%
GAATTCATTGACAAATGACT+CGG - chr6_1:90478692-90478711 Msa0897890:intron 30.0%
AGTTAACATGTCACAATACA+AGG - chr6_1:90479058-90479077 Msa0897890:intron 30.0%
AGGCAAATAGAAATAGGAAT+GGG + chr6_1:90479304-90479323 None:intergenic 30.0%
CAATAGTAGAAACATCATGT+AGG + chr6_1:90479512-90479531 None:intergenic 30.0%
GCGAAAATGAAAATCATTCT+AGG - chr6_1:90479560-90479579 Msa0897890:five_prime_UTR 30.0%
CAAGTGTATACTATTCTTGA+TGG + chr6_1:90475486-90475505 None:intergenic 30.0%
! CAAGAGAAACTTGAGTTTTA+CGG - chr6_1:90475517-90475536 Msa0897890:CDS 30.0%
!!! TAGTTTATTTTTAAGGTGGG+CGG - chr6_1:90475817-90475836 Msa0897890:intron 30.0%
!! TTATTTTGTAGTCCAACAAG+GGG - chr6_1:90475892-90475911 Msa0897890:intron 30.0%
! CGGTAATTATTTTCACCTAT+GGG + chr6_1:90476519-90476538 None:intergenic 30.0%
! ACGGTAATTATTTTCACCTA+TGG + chr6_1:90476520-90476539 None:intergenic 30.0%
TATACTATCCTGCAATAAAG+GGG + chr6_1:90476629-90476648 None:intergenic 30.0%
GTATACTATCCTGCAATAAA+GGG + chr6_1:90476630-90476649 None:intergenic 30.0%
AGTATACTATCCTGCAATAA+AGG + chr6_1:90476631-90476650 None:intergenic 30.0%
!!! TGGGTACAATTTTTTTTTGG+AGG - chr6_1:90476668-90476687 Msa0897890:CDS 30.0%
AAATTCCATACCTGTAATCA+GGG + chr6_1:90476750-90476769 None:intergenic 30.0%
TAATGCTGCAAACAAACATA+TGG - chr6_1:90476776-90476795 Msa0897890:CDS 30.0%
!!! CAGGGTTTTAAAACATTGAT+TGG + chr6_1:90477047-90477066 None:intergenic 30.0%
GAGCTAATTTGAATTTGGAT+TGG + chr6_1:90477318-90477337 None:intergenic 30.0%
ACTATGTTTCGAACTTACTT+GGG + chr6_1:90477516-90477535 None:intergenic 30.0%
AAAAAAAAAGGAAAACGGGT+CGG - chr6_1:90477570-90477589 Msa0897890:intron 30.0%
TGACTATCAATTTCGTAGAT+AGG - chr6_1:90477859-90477878 Msa0897890:intron 30.0%
GACTATCAATTTCGTAGATA+GGG - chr6_1:90477860-90477879 Msa0897890:intron 30.0%
GTAACATATTGCTGCAAATT+TGG + chr6_1:90477946-90477965 None:intergenic 30.0%
! CTGATACACATTCTGATTTT+AGG - chr6_1:90477989-90478008 Msa0897890:intron 30.0%
AAAGAAAACGAAGGTAGAAA+AGG + chr6_1:90478093-90478112 None:intergenic 30.0%
!! TTGATGATGAAAGAAAACGA+AGG + chr6_1:90478102-90478121 None:intergenic 30.0%
! AATTGACTTAAGAAGAAGAG+TGG + chr6_1:90478141-90478160 None:intergenic 30.0%
! ATGAAGGATGTGAAACTTTT+GGG + chr6_1:90478340-90478359 None:intergenic 30.0%
! TATGAAGGATGTGAAACTTT+TGG + chr6_1:90478341-90478360 None:intergenic 30.0%
! ATCAAATGTCTCAACTTTTG+AGG - chr6_1:90478364-90478383 Msa0897890:intron 30.0%
!! TCAACTTTTGAGGATTGTAA+GGG - chr6_1:90478374-90478393 Msa0897890:intron 30.0%
GAATTCATTGACAAATGACT+CGG - chr6_1:90478692-90478711 Msa0897890:intron 30.0%
AGTTAACATGTCACAATACA+AGG - chr6_1:90479058-90479077 Msa0897890:intron 30.0%
AGGCAAATAGAAATAGGAAT+GGG + chr6_1:90479304-90479323 None:intergenic 30.0%
CAATAGTAGAAACATCATGT+AGG + chr6_1:90479512-90479531 None:intergenic 30.0%
GCGAAAATGAAAATCATTCT+AGG - chr6_1:90479560-90479579 Msa0897890:five_prime_UTR 30.0%
! TATTTTGTAGTCCAACAAGG+GGG - chr6_1:90475893-90475912 Msa0897890:intron 35.0%
CATGCATAACATATCATAGG+TGG + chr6_1:90475966-90475985 None:intergenic 35.0%
GCACATGCATAACATATCAT+AGG + chr6_1:90475969-90475988 None:intergenic 35.0%
TGAAAATTGAGTCTACCAGA+AGG - chr6_1:90476271-90476290 Msa0897890:CDS 35.0%
GAAAATTGAGTCTACCAGAA+GGG - chr6_1:90476272-90476291 Msa0897890:CDS 35.0%
!! CTTTTGATGGCAATAGATAG+AGG + chr6_1:90476327-90476346 None:intergenic 35.0%
CTCTATCTATTGCCATCAAA+AGG - chr6_1:90476325-90476344 Msa0897890:CDS 35.0%
! ATCCTTGTTAAGCCTTTTGA+TGG + chr6_1:90476340-90476359 None:intergenic 35.0%
ATACTATCCTGCAATAAAGG+GGG + chr6_1:90476628-90476647 None:intergenic 35.0%
ATTGCAGGATAGTATACTAC+TGG - chr6_1:90476633-90476652 Msa0897890:CDS 35.0%
ACTACTGGATAGTATACTAC+TGG - chr6_1:90476648-90476667 Msa0897890:CDS 35.0%
CTACTGGATAGTATACTACT+GGG - chr6_1:90476649-90476668 Msa0897890:CDS 35.0%
CAAATTCCATACCTGTAATC+AGG + chr6_1:90476751-90476770 None:intergenic 35.0%
TTTGTAGAAATAGCCAAGGT+AGG + chr6_1:90476889-90476908 None:intergenic 35.0%
!!! CAATGTTTTAAAACCCTGAC+AGG - chr6_1:90477049-90477068 Msa0897890:intron 35.0%
GACTATGTTCAGAACTTACT+TGG + chr6_1:90477464-90477483 None:intergenic 35.0%
GACTATGTTTCGAACTTACT+TGG + chr6_1:90477517-90477536 None:intergenic 35.0%
AAAAAAAAGGAAAACGGGTC+GGG - chr6_1:90477571-90477590 Msa0897890:intron 35.0%
ACATATTGCTGCAAATTTGG+AGG + chr6_1:90477943-90477962 None:intergenic 35.0%
CAGAATGTGTATCAGAACAA+TGG + chr6_1:90477984-90478003 None:intergenic 35.0%
CTGAAATTTCCACATCCAAA+AGG + chr6_1:90478210-90478229 None:intergenic 35.0%
AACATCCAACCAAGTTATTG+CGG - chr6_1:90478258-90478277 Msa0897890:intron 35.0%
TGACAATCAAGCTTGAAGTT+TGG + chr6_1:90478288-90478307 None:intergenic 35.0%
TTCAAGCTTGATTGTCAACA+TGG - chr6_1:90478291-90478310 Msa0897890:intron 35.0%
!! CTCAACTTTTGAGGATTGTA+AGG - chr6_1:90478373-90478392 Msa0897890:intron 35.0%
TATACTCTATTGTACGAGTG+TGG - chr6_1:90478504-90478523 Msa0897890:intron 35.0%
! CCAATTTGTCACTTGAAACT+AGG + chr6_1:90478620-90478639 None:intergenic 35.0%
! CCTAGTTTCAAGTGACAAAT+TGG - chr6_1:90478617-90478636 Msa0897890:intron 35.0%
AAGAATAGTATCACCTTTCC+TGG - chr6_1:90478663-90478682 Msa0897890:intron 35.0%
!! ACAAATGACTCGGATGTTTT+AGG - chr6_1:90478702-90478721 Msa0897890:intron 35.0%
!! TGTTTTAGGTGAAGGATTTG+AGG - chr6_1:90478716-90478735 Msa0897890:intron 35.0%
ATGAAATCTGGTAGGAAATG+CGG - chr6_1:90478780-90478799 Msa0897890:intron 35.0%
GATGGAGTAACATCATCAAA+TGG - chr6_1:90478858-90478877 Msa0897890:intron 35.0%
!! TTTCCGAGCTTTAAATCCAA+CGG - chr6_1:90479189-90479208 Msa0897890:intron 35.0%
TGAGCAAGGTTTGTAAATAG+TGG - chr6_1:90479254-90479273 Msa0897890:intron 35.0%
GAACTACAAACTTACGAGTA+GGG + chr6_1:90479281-90479300 None:intergenic 35.0%
GGCAAATAGAAATAGGAATG+GGG + chr6_1:90479303-90479322 None:intergenic 35.0%
GAGGCAAATAGAAATAGGAA+TGG + chr6_1:90479305-90479324 None:intergenic 35.0%
ACTGAGAGGCAAATAGAAAT+AGG + chr6_1:90479310-90479329 None:intergenic 35.0%
GTAGGAATCTGTTAGAACAT+TGG + chr6_1:90479494-90479513 None:intergenic 35.0%
! TATTTTGTAGTCCAACAAGG+GGG - chr6_1:90475893-90475912 Msa0897890:intron 35.0%
CATGCATAACATATCATAGG+TGG + chr6_1:90475966-90475985 None:intergenic 35.0%
GCACATGCATAACATATCAT+AGG + chr6_1:90475969-90475988 None:intergenic 35.0%
TGAAAATTGAGTCTACCAGA+AGG - chr6_1:90476271-90476290 Msa0897890:CDS 35.0%
GAAAATTGAGTCTACCAGAA+GGG - chr6_1:90476272-90476291 Msa0897890:CDS 35.0%
!! CTTTTGATGGCAATAGATAG+AGG + chr6_1:90476327-90476346 None:intergenic 35.0%
CTCTATCTATTGCCATCAAA+AGG - chr6_1:90476325-90476344 Msa0897890:CDS 35.0%
! ATCCTTGTTAAGCCTTTTGA+TGG + chr6_1:90476340-90476359 None:intergenic 35.0%
ATACTATCCTGCAATAAAGG+GGG + chr6_1:90476628-90476647 None:intergenic 35.0%
ATTGCAGGATAGTATACTAC+TGG - chr6_1:90476633-90476652 Msa0897890:CDS 35.0%
ACTACTGGATAGTATACTAC+TGG - chr6_1:90476648-90476667 Msa0897890:CDS 35.0%
CTACTGGATAGTATACTACT+GGG - chr6_1:90476649-90476668 Msa0897890:CDS 35.0%
CAAATTCCATACCTGTAATC+AGG + chr6_1:90476751-90476770 None:intergenic 35.0%
TTTGTAGAAATAGCCAAGGT+AGG + chr6_1:90476889-90476908 None:intergenic 35.0%
!!! CAATGTTTTAAAACCCTGAC+AGG - chr6_1:90477049-90477068 Msa0897890:intron 35.0%
GACTATGTTCAGAACTTACT+TGG + chr6_1:90477464-90477483 None:intergenic 35.0%
GACTATGTTTCGAACTTACT+TGG + chr6_1:90477517-90477536 None:intergenic 35.0%
AAAAAAAAGGAAAACGGGTC+GGG - chr6_1:90477571-90477590 Msa0897890:intron 35.0%
ACATATTGCTGCAAATTTGG+AGG + chr6_1:90477943-90477962 None:intergenic 35.0%
CAGAATGTGTATCAGAACAA+TGG + chr6_1:90477984-90478003 None:intergenic 35.0%
CTGAAATTTCCACATCCAAA+AGG + chr6_1:90478210-90478229 None:intergenic 35.0%
AACATCCAACCAAGTTATTG+CGG - chr6_1:90478258-90478277 Msa0897890:intron 35.0%
TGACAATCAAGCTTGAAGTT+TGG + chr6_1:90478288-90478307 None:intergenic 35.0%
TTCAAGCTTGATTGTCAACA+TGG - chr6_1:90478291-90478310 Msa0897890:intron 35.0%
!! CTCAACTTTTGAGGATTGTA+AGG - chr6_1:90478373-90478392 Msa0897890:intron 35.0%
TATACTCTATTGTACGAGTG+TGG - chr6_1:90478504-90478523 Msa0897890:intron 35.0%
! CCAATTTGTCACTTGAAACT+AGG + chr6_1:90478620-90478639 None:intergenic 35.0%
! CCTAGTTTCAAGTGACAAAT+TGG - chr6_1:90478617-90478636 Msa0897890:intron 35.0%
AAGAATAGTATCACCTTTCC+TGG - chr6_1:90478663-90478682 Msa0897890:intron 35.0%
!! ACAAATGACTCGGATGTTTT+AGG - chr6_1:90478702-90478721 Msa0897890:intron 35.0%
!! TGTTTTAGGTGAAGGATTTG+AGG - chr6_1:90478716-90478735 Msa0897890:intron 35.0%
ATGAAATCTGGTAGGAAATG+CGG - chr6_1:90478780-90478799 Msa0897890:intron 35.0%
GATGGAGTAACATCATCAAA+TGG - chr6_1:90478858-90478877 Msa0897890:intron 35.0%
!! TTTCCGAGCTTTAAATCCAA+CGG - chr6_1:90479189-90479208 Msa0897890:intron 35.0%
TGAGCAAGGTTTGTAAATAG+TGG - chr6_1:90479254-90479273 Msa0897890:intron 35.0%
GAACTACAAACTTACGAGTA+GGG + chr6_1:90479281-90479300 None:intergenic 35.0%
GGCAAATAGAAATAGGAATG+GGG + chr6_1:90479303-90479322 None:intergenic 35.0%
GAGGCAAATAGAAATAGGAA+TGG + chr6_1:90479305-90479324 None:intergenic 35.0%
ACTGAGAGGCAAATAGAAAT+AGG + chr6_1:90479310-90479329 None:intergenic 35.0%
GTAGGAATCTGTTAGAACAT+TGG + chr6_1:90479494-90479513 None:intergenic 35.0%
ACGTCTTAGTTGCCATCAAA+AGG - chr6_1:90475556-90475575 Msa0897890:CDS 40.0%
TGCCATCAAAAGGCTTAACA+AGG - chr6_1:90476335-90476354 Msa0897890:CDS 40.0%
GCTTAACAAGGATGCATTAC+AGG - chr6_1:90476347-90476366 Msa0897890:CDS 40.0%
TACAACGTGCCGTATATATG+CGG - chr6_1:90476489-90476508 Msa0897890:CDS 40.0%
ATGGGTGTACCGCATATATA+CGG + chr6_1:90476501-90476520 None:intergenic 40.0%
TATATATGCGGTACACCCAT+AGG - chr6_1:90476501-90476520 Msa0897890:CDS 40.0%
!!! TCTTGCTTTTGGTGTTAGGT+GGG + chr6_1:90476557-90476576 None:intergenic 40.0%
!!! TTCCTCTTGCTTTTGGTGTT+AGG + chr6_1:90476561-90476580 None:intergenic 40.0%
!! GGCTTTTGATTGTTTTGTGC+AGG + chr6_1:90476591-90476610 None:intergenic 40.0%
GGGAAATGCTAGAAGAAACT+AGG - chr6_1:90478028-90478047 Msa0897890:intron 40.0%
AGAAACTAGGAACATCGCTT+TGG - chr6_1:90478041-90478060 Msa0897890:intron 40.0%
AACGAAGGTAGAAAAGGAAG+CGG + chr6_1:90478087-90478106 None:intergenic 40.0%
GACTTAAGAAGAAGAGTGGA+AGG + chr6_1:90478137-90478156 None:intergenic 40.0%
AAAAGGTTCACAAGATGTGG+TGG + chr6_1:90478193-90478212 None:intergenic 40.0%
! ACCACATCTTGTGAACCTTT+TGG - chr6_1:90478192-90478211 Msa0897890:intron 40.0%
TCCAAAAGGTTCACAAGATG+TGG + chr6_1:90478196-90478215 None:intergenic 40.0%
! TCTTGTGAACCTTTTGGATG+TGG - chr6_1:90478198-90478217 Msa0897890:intron 40.0%
GGATGTTAAGACTCCAGAAT+GGG + chr6_1:90478245-90478264 None:intergenic 40.0%
TGGATGTTAAGACTCCAGAA+TGG + chr6_1:90478246-90478265 None:intergenic 40.0%
TTTGGATGACCGCAATAACT+TGG + chr6_1:90478270-90478289 None:intergenic 40.0%
GGATTGTAAGGGACGATTTA+TGG - chr6_1:90478385-90478404 Msa0897890:intron 40.0%
! AACGTAGAGGAGTTTGAGTT+TGG + chr6_1:90478537-90478556 None:intergenic 40.0%
AACTTCAGAACTCAACGTAG+AGG + chr6_1:90478550-90478569 None:intergenic 40.0%
TGAAGTGATTTCTTGCCTCA+TGG - chr6_1:90478572-90478591 Msa0897890:intron 40.0%
TGAATTCTTCAAGCCAGGAA+AGG + chr6_1:90478679-90478698 None:intergenic 40.0%
GTCAATGAATTCTTCAAGCC+AGG + chr6_1:90478684-90478703 None:intergenic 40.0%
! TTAGGTGAAGGATTTGAGGT+TGG - chr6_1:90478720-90478739 Msa0897890:intron 40.0%
! TAGGTGAAGGATTTGAGGTT+GGG - chr6_1:90478721-90478740 Msa0897890:intron 40.0%
TTCAGTTATGTGTCTCTTGC+CGG - chr6_1:90478821-90478840 Msa0897890:intron 40.0%
TGATGTTACTCCATCTGCAA+TGG + chr6_1:90478853-90478872 None:intergenic 40.0%
! CGATACGTCTAGTTCATGTT+TGG - chr6_1:90479027-90479046 Msa0897890:intron 40.0%
GGAACTACAAACTTACGAGT+AGG + chr6_1:90479282-90479301 None:intergenic 40.0%
!! AATCATGGAGGTTTTCTGGT+GGG + chr6_1:90479334-90479353 None:intergenic 40.0%
! AAGGAATCATGGAGGTTTTC+TGG + chr6_1:90479338-90479357 None:intergenic 40.0%
ACGTCTTAGTTGCCATCAAA+AGG - chr6_1:90475556-90475575 Msa0897890:CDS 40.0%
TGCCATCAAAAGGCTTAACA+AGG - chr6_1:90476335-90476354 Msa0897890:CDS 40.0%
GCTTAACAAGGATGCATTAC+AGG - chr6_1:90476347-90476366 Msa0897890:CDS 40.0%
TACAACGTGCCGTATATATG+CGG - chr6_1:90476489-90476508 Msa0897890:CDS 40.0%
ATGGGTGTACCGCATATATA+CGG + chr6_1:90476501-90476520 None:intergenic 40.0%
TATATATGCGGTACACCCAT+AGG - chr6_1:90476501-90476520 Msa0897890:CDS 40.0%
!!! TCTTGCTTTTGGTGTTAGGT+GGG + chr6_1:90476557-90476576 None:intergenic 40.0%
!!! TTCCTCTTGCTTTTGGTGTT+AGG + chr6_1:90476561-90476580 None:intergenic 40.0%
!! GGCTTTTGATTGTTTTGTGC+AGG + chr6_1:90476591-90476610 None:intergenic 40.0%
GGGAAATGCTAGAAGAAACT+AGG - chr6_1:90478028-90478047 Msa0897890:intron 40.0%
AGAAACTAGGAACATCGCTT+TGG - chr6_1:90478041-90478060 Msa0897890:intron 40.0%
AACGAAGGTAGAAAAGGAAG+CGG + chr6_1:90478087-90478106 None:intergenic 40.0%
GACTTAAGAAGAAGAGTGGA+AGG + chr6_1:90478137-90478156 None:intergenic 40.0%
AAAAGGTTCACAAGATGTGG+TGG + chr6_1:90478193-90478212 None:intergenic 40.0%
! ACCACATCTTGTGAACCTTT+TGG - chr6_1:90478192-90478211 Msa0897890:intron 40.0%
TCCAAAAGGTTCACAAGATG+TGG + chr6_1:90478196-90478215 None:intergenic 40.0%
! TCTTGTGAACCTTTTGGATG+TGG - chr6_1:90478198-90478217 Msa0897890:intron 40.0%
GGATGTTAAGACTCCAGAAT+GGG + chr6_1:90478245-90478264 None:intergenic 40.0%
TGGATGTTAAGACTCCAGAA+TGG + chr6_1:90478246-90478265 None:intergenic 40.0%
TTTGGATGACCGCAATAACT+TGG + chr6_1:90478270-90478289 None:intergenic 40.0%
GGATTGTAAGGGACGATTTA+TGG - chr6_1:90478385-90478404 Msa0897890:intron 40.0%
! AACGTAGAGGAGTTTGAGTT+TGG + chr6_1:90478537-90478556 None:intergenic 40.0%
AACTTCAGAACTCAACGTAG+AGG + chr6_1:90478550-90478569 None:intergenic 40.0%
TGAAGTGATTTCTTGCCTCA+TGG - chr6_1:90478572-90478591 Msa0897890:intron 40.0%
TGAATTCTTCAAGCCAGGAA+AGG + chr6_1:90478679-90478698 None:intergenic 40.0%
GTCAATGAATTCTTCAAGCC+AGG + chr6_1:90478684-90478703 None:intergenic 40.0%
! TTAGGTGAAGGATTTGAGGT+TGG - chr6_1:90478720-90478739 Msa0897890:intron 40.0%
! TAGGTGAAGGATTTGAGGTT+GGG - chr6_1:90478721-90478740 Msa0897890:intron 40.0%
TTCAGTTATGTGTCTCTTGC+CGG - chr6_1:90478821-90478840 Msa0897890:intron 40.0%
TGATGTTACTCCATCTGCAA+TGG + chr6_1:90478853-90478872 None:intergenic 40.0%
! CGATACGTCTAGTTCATGTT+TGG - chr6_1:90479027-90479046 Msa0897890:intron 40.0%
GGAACTACAAACTTACGAGT+AGG + chr6_1:90479282-90479301 None:intergenic 40.0%
!! AATCATGGAGGTTTTCTGGT+GGG + chr6_1:90479334-90479353 None:intergenic 40.0%
! AAGGAATCATGGAGGTTTTC+TGG + chr6_1:90479338-90479357 None:intergenic 40.0%
! CTACTCATTTTCCCCCTTGT+TGG + chr6_1:90475907-90475926 None:intergenic 45.0%
CTCACTTAGTGGGGTAAAAG+TGG + chr6_1:90476128-90476147 None:intergenic 45.0%
! CACTTTTACCCCACTAAGTG+AGG - chr6_1:90476126-90476145 Msa0897890:intron 45.0%
TTTACCCCACTAAGTGAGGT+CGG - chr6_1:90476130-90476149 Msa0897890:intron 45.0%
TCTAAGAGTCTAGACCCTTC+TGG + chr6_1:90476289-90476308 None:intergenic 45.0%
GGGTCTAGACTCTTAGAATG+TGG - chr6_1:90476292-90476311 Msa0897890:CDS 45.0%
AACAAGGATGCATTACAGGC+AGG - chr6_1:90476351-90476370 Msa0897890:CDS 45.0%
ACAAGGATGCATTACAGGCA+GGG - chr6_1:90476352-90476371 Msa0897890:CDS 45.0%
GTGGGGATTCCTCATGTATA+CGG + chr6_1:90476539-90476558 None:intergenic 45.0%
!!! CTTGCTTTTGGTGTTAGGTG+GGG + chr6_1:90476556-90476575 None:intergenic 45.0%
!!! CTCTTGCTTTTGGTGTTAGG+TGG + chr6_1:90476558-90476577 None:intergenic 45.0%
CACCTAACACCAAAAGCAAG+AGG - chr6_1:90476556-90476575 Msa0897890:CDS 45.0%
!! AAAAGGGTATCCACTGTCTC+TGG - chr6_1:90476987-90477006 Msa0897890:CDS 45.0%
CAGCTGGCTAATTGCATATC+CGG - chr6_1:90477650-90477669 Msa0897890:intron 45.0%
GCGATATTAGCTACCCATTC+TGG - chr6_1:90478229-90478248 Msa0897890:intron 45.0%
GATGACCGCAATAACTTGGT+TGG + chr6_1:90478266-90478285 None:intergenic 45.0%
AGTGATTTCTTGCCTCATGG+AGG - chr6_1:90478575-90478594 Msa0897890:intron 45.0%
GTGATTTCTTGCCTCATGGA+GGG - chr6_1:90478576-90478595 Msa0897890:intron 45.0%
!! GACTCGGATGTTTTAGGTGA+AGG - chr6_1:90478708-90478727 Msa0897890:intron 45.0%
GGTGTGGGAGAAGAAATATG+TGG - chr6_1:90478750-90478769 Msa0897890:intron 45.0%
GTGGGAGAAGAAATATGTGG+TGG - chr6_1:90478753-90478772 Msa0897890:intron 45.0%
TGTGGTGGTTGCATGAAATC+TGG - chr6_1:90478768-90478787 Msa0897890:intron 45.0%
GTGGTTGCATGAAATCTGGT+AGG - chr6_1:90478772-90478791 Msa0897890:intron 45.0%
! CCATCTGCAATGGATTTCTC+CGG + chr6_1:90478843-90478862 None:intergenic 45.0%
! CGTCCGTTGGATTTAAAGCT+CGG + chr6_1:90479195-90479214 None:intergenic 45.0%
GATTACGAATTCACGTCCGT+TGG + chr6_1:90479208-90479227 None:intergenic 45.0%
CTCAAGTACACTCTTGAGCA+AGG - chr6_1:90479240-90479259 Msa0897890:intron 45.0%
! GAATCATGGAGGTTTTCTGG+TGG + chr6_1:90479335-90479354 None:intergenic 45.0%
AAGAGTCGCTGAAGGAATCA+TGG + chr6_1:90479349-90479368 None:intergenic 45.0%
! CTACTCATTTTCCCCCTTGT+TGG + chr6_1:90475907-90475926 None:intergenic 45.0%
CTCACTTAGTGGGGTAAAAG+TGG + chr6_1:90476128-90476147 None:intergenic 45.0%
! CACTTTTACCCCACTAAGTG+AGG - chr6_1:90476126-90476145 Msa0897890:intron 45.0%
TTTACCCCACTAAGTGAGGT+CGG - chr6_1:90476130-90476149 Msa0897890:intron 45.0%
TCTAAGAGTCTAGACCCTTC+TGG + chr6_1:90476289-90476308 None:intergenic 45.0%
GGGTCTAGACTCTTAGAATG+TGG - chr6_1:90476292-90476311 Msa0897890:CDS 45.0%
AACAAGGATGCATTACAGGC+AGG - chr6_1:90476351-90476370 Msa0897890:CDS 45.0%
ACAAGGATGCATTACAGGCA+GGG - chr6_1:90476352-90476371 Msa0897890:CDS 45.0%
GTGGGGATTCCTCATGTATA+CGG + chr6_1:90476539-90476558 None:intergenic 45.0%
!!! CTTGCTTTTGGTGTTAGGTG+GGG + chr6_1:90476556-90476575 None:intergenic 45.0%
!!! CTCTTGCTTTTGGTGTTAGG+TGG + chr6_1:90476558-90476577 None:intergenic 45.0%
CACCTAACACCAAAAGCAAG+AGG - chr6_1:90476556-90476575 Msa0897890:CDS 45.0%
!! AAAAGGGTATCCACTGTCTC+TGG - chr6_1:90476987-90477006 Msa0897890:CDS 45.0%
CAGCTGGCTAATTGCATATC+CGG - chr6_1:90477650-90477669 Msa0897890:intron 45.0%
GCGATATTAGCTACCCATTC+TGG - chr6_1:90478229-90478248 Msa0897890:intron 45.0%
GATGACCGCAATAACTTGGT+TGG + chr6_1:90478266-90478285 None:intergenic 45.0%
AGTGATTTCTTGCCTCATGG+AGG - chr6_1:90478575-90478594 Msa0897890:intron 45.0%
GTGATTTCTTGCCTCATGGA+GGG - chr6_1:90478576-90478595 Msa0897890:intron 45.0%
!! GACTCGGATGTTTTAGGTGA+AGG - chr6_1:90478708-90478727 Msa0897890:intron 45.0%
GGTGTGGGAGAAGAAATATG+TGG - chr6_1:90478750-90478769 Msa0897890:intron 45.0%
GTGGGAGAAGAAATATGTGG+TGG - chr6_1:90478753-90478772 Msa0897890:intron 45.0%
TGTGGTGGTTGCATGAAATC+TGG - chr6_1:90478768-90478787 Msa0897890:intron 45.0%
GTGGTTGCATGAAATCTGGT+AGG - chr6_1:90478772-90478791 Msa0897890:intron 45.0%
! CCATCTGCAATGGATTTCTC+CGG + chr6_1:90478843-90478862 None:intergenic 45.0%
! CGTCCGTTGGATTTAAAGCT+CGG + chr6_1:90479195-90479214 None:intergenic 45.0%
GATTACGAATTCACGTCCGT+TGG + chr6_1:90479208-90479227 None:intergenic 45.0%
CTCAAGTACACTCTTGAGCA+AGG - chr6_1:90479240-90479259 Msa0897890:intron 45.0%
! GAATCATGGAGGTTTTCTGG+TGG + chr6_1:90479335-90479354 None:intergenic 45.0%
AAGAGTCGCTGAAGGAATCA+TGG + chr6_1:90479349-90479368 None:intergenic 45.0%
TTGAGCCGACCTCACTTAGT+GGG + chr6_1:90476138-90476157 None:intergenic 50.0%
ATTGAGCCGACCTCACTTAG+TGG + chr6_1:90476139-90476158 None:intergenic 50.0%
!! TCGGCTCTGGGAATGAAAAG+AGG - chr6_1:90476397-90476416 Msa0897890:CDS 50.0%
GTTTGCACCCCCTTTATTGC+AGG - chr6_1:90476618-90476637 Msa0897890:CDS 50.0%
!! TTTTTGGAGGCCCATCCTTG+AGG - chr6_1:90476681-90476700 Msa0897890:CDS 50.0%
!! TTTTGGAGGCCCATCCTTGA+GGG - chr6_1:90476682-90476701 Msa0897890:CDS 50.0%
GCAAACAGCTCAACCTAGCT+GGG + chr6_1:90476711-90476730 None:intergenic 50.0%
TGCAAACAGCTCAACCTAGC+TGG + chr6_1:90476712-90476731 None:intergenic 50.0%
TCCATACCTGTAATCAGGGC+CGG + chr6_1:90476746-90476765 None:intergenic 50.0%
ATCCACTGTCTCTGGATCTG+TGG - chr6_1:90476995-90477014 Msa0897890:CDS 50.0%
ATCCACAGATCCAGAGACAG+TGG + chr6_1:90477000-90477019 None:intergenic 50.0%
TGGTTCACTGGTCGAACTAG+TGG - chr6_1:90477093-90477112 Msa0897890:intron 50.0%
GGTTCACTGGTCGAACTAGT+GGG - chr6_1:90477094-90477113 Msa0897890:intron 50.0%
! CGAACTAGTGGGTCACTAGT+CGG - chr6_1:90477105-90477124 Msa0897890:intron 50.0%
CGGACGCATGAATATTGACC+CGG - chr6_1:90477125-90477144 Msa0897890:intron 50.0%
AAAAAGGAAAACGGGTCGGG+TGG - chr6_1:90477574-90477593 Msa0897890:intron 50.0%
AAAAGGAAAACGGGTCGGGT+GGG - chr6_1:90477575-90477594 Msa0897890:intron 50.0%
GCAATTAGCCAGCTGAAACC+CGG + chr6_1:90477645-90477664 None:intergenic 50.0%
!!! TTTTAAAACCCCGACCGACC+CGG + chr6_1:90477722-90477741 None:intergenic 50.0%
!!! CGGTCGGGGTTTTAAAACAC+TGG - chr6_1:90477725-90477744 Msa0897890:intron 50.0%
!! TCGCTTTGGAGCGTTCTTCT+CGG - chr6_1:90478055-90478074 Msa0897890:intron 50.0%
GAAGGTAGAAAAGGAAGCGG+AGG + chr6_1:90478084-90478103 None:intergenic 50.0%
GGTGGACACAGCATTAGTAG+TGG + chr6_1:90478175-90478194 None:intergenic 50.0%
! CACGAGTTTTACCCTCCATG+AGG + chr6_1:90478590-90478609 None:intergenic 50.0%
! GTGAAGGATTTGAGGTTGGG+TGG - chr6_1:90478724-90478743 Msa0897890:intron 50.0%
CCGGAGAAATCCATTGCAGA+TGG - chr6_1:90478840-90478859 Msa0897890:intron 50.0%
AAGCTCGGAAATATCGCACG+AGG + chr6_1:90479180-90479199 None:intergenic 50.0%
!! GTTTTCTGGTGGGAACTGAG+AGG + chr6_1:90479324-90479343 None:intergenic 50.0%
AGTCGCTGAAGGAATCATGG+AGG + chr6_1:90479346-90479365 None:intergenic 50.0%
AGCTGCATAAGAGTCGCTGA+AGG + chr6_1:90479357-90479376 None:intergenic 50.0%
CAGCGACTCTTATGCAGCTT+AGG - chr6_1:90479358-90479377 Msa0897890:intron 50.0%
!! GCACAGAGAAGCATTTGAGC+AGG - chr6_1:90479534-90479553 Msa0897890:five_prime_UTR 50.0%
TTGAGCCGACCTCACTTAGT+GGG + chr6_1:90476138-90476157 None:intergenic 50.0%
ATTGAGCCGACCTCACTTAG+TGG + chr6_1:90476139-90476158 None:intergenic 50.0%
!! TCGGCTCTGGGAATGAAAAG+AGG - chr6_1:90476397-90476416 Msa0897890:CDS 50.0%
GTTTGCACCCCCTTTATTGC+AGG - chr6_1:90476618-90476637 Msa0897890:CDS 50.0%
!! TTTTTGGAGGCCCATCCTTG+AGG - chr6_1:90476681-90476700 Msa0897890:CDS 50.0%
!! TTTTGGAGGCCCATCCTTGA+GGG - chr6_1:90476682-90476701 Msa0897890:CDS 50.0%
GCAAACAGCTCAACCTAGCT+GGG + chr6_1:90476711-90476730 None:intergenic 50.0%
TGCAAACAGCTCAACCTAGC+TGG + chr6_1:90476712-90476731 None:intergenic 50.0%
TCCATACCTGTAATCAGGGC+CGG + chr6_1:90476746-90476765 None:intergenic 50.0%
ATCCACTGTCTCTGGATCTG+TGG - chr6_1:90476995-90477014 Msa0897890:CDS 50.0%
ATCCACAGATCCAGAGACAG+TGG + chr6_1:90477000-90477019 None:intergenic 50.0%
TGGTTCACTGGTCGAACTAG+TGG - chr6_1:90477093-90477112 Msa0897890:intron 50.0%
GGTTCACTGGTCGAACTAGT+GGG - chr6_1:90477094-90477113 Msa0897890:intron 50.0%
! CGAACTAGTGGGTCACTAGT+CGG - chr6_1:90477105-90477124 Msa0897890:intron 50.0%
CGGACGCATGAATATTGACC+CGG - chr6_1:90477125-90477144 Msa0897890:intron 50.0%
AAAAAGGAAAACGGGTCGGG+TGG - chr6_1:90477574-90477593 Msa0897890:intron 50.0%
AAAAGGAAAACGGGTCGGGT+GGG - chr6_1:90477575-90477594 Msa0897890:intron 50.0%
GCAATTAGCCAGCTGAAACC+CGG + chr6_1:90477645-90477664 None:intergenic 50.0%
!!! TTTTAAAACCCCGACCGACC+CGG + chr6_1:90477722-90477741 None:intergenic 50.0%
!!! CGGTCGGGGTTTTAAAACAC+TGG - chr6_1:90477725-90477744 Msa0897890:intron 50.0%
!! TCGCTTTGGAGCGTTCTTCT+CGG - chr6_1:90478055-90478074 Msa0897890:intron 50.0%
GAAGGTAGAAAAGGAAGCGG+AGG + chr6_1:90478084-90478103 None:intergenic 50.0%
GGTGGACACAGCATTAGTAG+TGG + chr6_1:90478175-90478194 None:intergenic 50.0%
! CACGAGTTTTACCCTCCATG+AGG + chr6_1:90478590-90478609 None:intergenic 50.0%
! GTGAAGGATTTGAGGTTGGG+TGG - chr6_1:90478724-90478743 Msa0897890:intron 50.0%
CCGGAGAAATCCATTGCAGA+TGG - chr6_1:90478840-90478859 Msa0897890:intron 50.0%
AAGCTCGGAAATATCGCACG+AGG + chr6_1:90479180-90479199 None:intergenic 50.0%
!! GTTTTCTGGTGGGAACTGAG+AGG + chr6_1:90479324-90479343 None:intergenic 50.0%
AGTCGCTGAAGGAATCATGG+AGG + chr6_1:90479346-90479365 None:intergenic 50.0%
AGCTGCATAAGAGTCGCTGA+AGG + chr6_1:90479357-90479376 None:intergenic 50.0%
CAGCGACTCTTATGCAGCTT+AGG - chr6_1:90479358-90479377 Msa0897890:intron 50.0%
!! GCACAGAGAAGCATTTGAGC+AGG - chr6_1:90479534-90479553 Msa0897890:five_prime_UTR 50.0%
TGAGCCGACCTCACTTAGTG+GGG + chr6_1:90476137-90476156 None:intergenic 55.0%
AGCCTCCGAATTCTCAGGGA+CGG + chr6_1:90476378-90476397 None:intergenic 55.0%
TCCCTGAGAATTCGGAGGCT+CGG - chr6_1:90476378-90476397 Msa0897890:CDS 55.0%
ACCAGGTCGATCACCTGTCA+GGG + chr6_1:90477065-90477084 None:intergenic 55.0%
ACAGGTGATCGACCTGGTCA+AGG - chr6_1:90477067-90477086 Msa0897890:intron 55.0%
AGTGAACCAGTGCCTTGACC+AGG + chr6_1:90477082-90477101 None:intergenic 55.0%
!! TGGTCAAGGCACTGGTTCAC+TGG - chr6_1:90477081-90477100 Msa0897890:intron 55.0%
!! GGTGGGCTAAACTGGTTCAG+CGG - chr6_1:90477592-90477611 Msa0897890:intron 55.0%
! TGTGACTCGGCAAGGTCAGT+GGG + chr6_1:90477622-90477641 None:intergenic 55.0%
AGCTGAAACCCGGTGTGACT+CGG + chr6_1:90477635-90477654 None:intergenic 55.0%
! GGATTTGAGGTTGGGTGGAG+TGG - chr6_1:90478729-90478748 Msa0897890:intron 55.0%
TGAGCCGACCTCACTTAGTG+GGG + chr6_1:90476137-90476156 None:intergenic 55.0%
AGCCTCCGAATTCTCAGGGA+CGG + chr6_1:90476378-90476397 None:intergenic 55.0%
TCCCTGAGAATTCGGAGGCT+CGG - chr6_1:90476378-90476397 Msa0897890:CDS 55.0%
ACCAGGTCGATCACCTGTCA+GGG + chr6_1:90477065-90477084 None:intergenic 55.0%
ACAGGTGATCGACCTGGTCA+AGG - chr6_1:90477067-90477086 Msa0897890:intron 55.0%
AGTGAACCAGTGCCTTGACC+AGG + chr6_1:90477082-90477101 None:intergenic 55.0%
!! TGGTCAAGGCACTGGTTCAC+TGG - chr6_1:90477081-90477100 Msa0897890:intron 55.0%
!! GGTGGGCTAAACTGGTTCAG+CGG - chr6_1:90477592-90477611 Msa0897890:intron 55.0%
! TGTGACTCGGCAAGGTCAGT+GGG + chr6_1:90477622-90477641 None:intergenic 55.0%
AGCTGAAACCCGGTGTGACT+CGG + chr6_1:90477635-90477654 None:intergenic 55.0%
! GGATTTGAGGTTGGGTGGAG+TGG - chr6_1:90478729-90478748 Msa0897890:intron 55.0%
CAGGGCCGTCCCTGAGAATT+CGG - chr6_1:90476370-90476389 Msa0897890:CDS 60.0%
GCCGAGCCTCCGAATTCTCA+GGG + chr6_1:90476382-90476401 None:intergenic 60.0%
AGCCGAGCCTCCGAATTCTC+AGG + chr6_1:90476383-90476402 None:intergenic 60.0%
AGAATTCGGAGGCTCGGCTC+TGG - chr6_1:90476384-90476403 Msa0897890:CDS 60.0%
GAATTCGGAGGCTCGGCTCT+GGG - chr6_1:90476385-90476404 Msa0897890:CDS 60.0%
! AAGGGGGTGCAAACAGCGCA+TGG + chr6_1:90476612-90476631 None:intergenic 60.0%
GAGCTGTTTGCACCCCCTCA+AGG - chr6_1:90476720-90476739 Msa0897890:CDS 60.0%
TGTTTGCACCCCCTCAAGGC+CGG - chr6_1:90476724-90476743 Msa0897890:CDS 60.0%
TAATCAGGGCCGGCCTTGAG+GGG + chr6_1:90476736-90476755 None:intergenic 60.0%
GTAATCAGGGCCGGCCTTGA+GGG + chr6_1:90476737-90476756 None:intergenic 60.0%
TGTAATCAGGGCCGGCCTTG+AGG + chr6_1:90476738-90476757 None:intergenic 60.0%
TCAAGGCCGGCCCTGATTAC+AGG - chr6_1:90476737-90476756 Msa0897890:CDS 60.0%
GCCGGCCCTGATTACAGGTA+TGG - chr6_1:90476742-90476761 Msa0897890:CDS 60.0%
ACCCTGACAGGTGATCGACC+TGG - chr6_1:90477061-90477080 Msa0897890:intron 60.0%
GACCAGGTCGATCACCTGTC+AGG + chr6_1:90477066-90477085 None:intergenic 60.0%
GATCGACCTGGTCAAGGCAC+TGG - chr6_1:90477073-90477092 Msa0897890:intron 60.0%
! GTGTGACTCGGCAAGGTCAG+TGG + chr6_1:90477623-90477642 None:intergenic 60.0%
CTGACCTTGCCGAGTCACAC+CGG - chr6_1:90477623-90477642 Msa0897890:intron 60.0%
TGACCTTGCCGAGTCACACC+GGG - chr6_1:90477624-90477643 Msa0897890:intron 60.0%
! AAACCCGGTGTGACTCGGCA+AGG + chr6_1:90477630-90477649 None:intergenic 60.0%
GAGTCACACCGGGTTTCAGC+TGG - chr6_1:90477634-90477653 Msa0897890:intron 60.0%
! AACCGGAGGGTGCAGCTGTT+CGG + chr6_1:90477689-90477708 None:intergenic 60.0%
TGAGGTTGGGTGGAGTGGTG+TGG - chr6_1:90478734-90478753 Msa0897890:intron 60.0%
GAGGTTGGGTGGAGTGGTGT+GGG - chr6_1:90478735-90478754 Msa0897890:intron 60.0%
CAGGGCCGTCCCTGAGAATT+CGG - chr6_1:90476370-90476389 Msa0897890:CDS 60.0%
GCCGAGCCTCCGAATTCTCA+GGG + chr6_1:90476382-90476401 None:intergenic 60.0%
AGCCGAGCCTCCGAATTCTC+AGG + chr6_1:90476383-90476402 None:intergenic 60.0%
AGAATTCGGAGGCTCGGCTC+TGG - chr6_1:90476384-90476403 Msa0897890:CDS 60.0%
GAATTCGGAGGCTCGGCTCT+GGG - chr6_1:90476385-90476404 Msa0897890:CDS 60.0%
! AAGGGGGTGCAAACAGCGCA+TGG + chr6_1:90476612-90476631 None:intergenic 60.0%
GAGCTGTTTGCACCCCCTCA+AGG - chr6_1:90476720-90476739 Msa0897890:CDS 60.0%
TGTTTGCACCCCCTCAAGGC+CGG - chr6_1:90476724-90476743 Msa0897890:CDS 60.0%
TAATCAGGGCCGGCCTTGAG+GGG + chr6_1:90476736-90476755 None:intergenic 60.0%
GTAATCAGGGCCGGCCTTGA+GGG + chr6_1:90476737-90476756 None:intergenic 60.0%
TGTAATCAGGGCCGGCCTTG+AGG + chr6_1:90476738-90476757 None:intergenic 60.0%
TCAAGGCCGGCCCTGATTAC+AGG - chr6_1:90476737-90476756 Msa0897890:CDS 60.0%
GCCGGCCCTGATTACAGGTA+TGG - chr6_1:90476742-90476761 Msa0897890:CDS 60.0%
ACCCTGACAGGTGATCGACC+TGG - chr6_1:90477061-90477080 Msa0897890:intron 60.0%
GACCAGGTCGATCACCTGTC+AGG + chr6_1:90477066-90477085 None:intergenic 60.0%
GATCGACCTGGTCAAGGCAC+TGG - chr6_1:90477073-90477092 Msa0897890:intron 60.0%
! GTGTGACTCGGCAAGGTCAG+TGG + chr6_1:90477623-90477642 None:intergenic 60.0%
CTGACCTTGCCGAGTCACAC+CGG - chr6_1:90477623-90477642 Msa0897890:intron 60.0%
TGACCTTGCCGAGTCACACC+GGG - chr6_1:90477624-90477643 Msa0897890:intron 60.0%
! AAACCCGGTGTGACTCGGCA+AGG + chr6_1:90477630-90477649 None:intergenic 60.0%
GAGTCACACCGGGTTTCAGC+TGG - chr6_1:90477634-90477653 Msa0897890:intron 60.0%
! AACCGGAGGGTGCAGCTGTT+CGG + chr6_1:90477689-90477708 None:intergenic 60.0%
TGAGGTTGGGTGGAGTGGTG+TGG - chr6_1:90478734-90478753 Msa0897890:intron 60.0%
GAGGTTGGGTGGAGTGGTGT+GGG - chr6_1:90478735-90478754 Msa0897890:intron 60.0%
GGCCGTCCCTGAGAATTCGG+AGG - chr6_1:90476373-90476392 Msa0897890:CDS 65.0%
TGGAGGCCCATCCTTGAGGG+AGG - chr6_1:90476685-90476704 Msa0897890:CDS 65.0%
GCTGGGCCTCCCTCAAGGAT+GGG + chr6_1:90476694-90476713 None:intergenic 65.0%
AGCTGGGCCTCCCTCAAGGA+TGG + chr6_1:90476695-90476714 None:intergenic 65.0%
TCCTTGAGGGAGGCCCAGCT+AGG - chr6_1:90476695-90476714 Msa0897890:CDS 65.0%
ACCTAGCTGGGCCTCCCTCA+AGG + chr6_1:90476699-90476718 None:intergenic 65.0%
AATCAGGGCCGGCCTTGAGG+GGG + chr6_1:90476735-90476754 None:intergenic 65.0%
!! ACGGGTCGGGTGGGCTAAAC+TGG - chr6_1:90477584-90477603 Msa0897890:intron 65.0%
GACTCGGCAAGGTCAGTGGG+CGG + chr6_1:90477619-90477638 None:intergenic 65.0%
GTTCGGGCAGGCTACTGGAC+CGG + chr6_1:90477672-90477691 None:intergenic 65.0%
CAGCTGTTCGGGCAGGCTAC+TGG + chr6_1:90477677-90477696 None:intergenic 65.0%
! ACCGGAGGGTGCAGCTGTTC+GGG + chr6_1:90477688-90477707 None:intergenic 65.0%
AAAACCCCGACCGACCCGGT+TGG + chr6_1:90477718-90477737 None:intergenic 65.0%
GGCCGTCCCTGAGAATTCGG+AGG - chr6_1:90476373-90476392 Msa0897890:CDS 65.0%
TGGAGGCCCATCCTTGAGGG+AGG - chr6_1:90476685-90476704 Msa0897890:CDS 65.0%
GCTGGGCCTCCCTCAAGGAT+GGG + chr6_1:90476694-90476713 None:intergenic 65.0%
AGCTGGGCCTCCCTCAAGGA+TGG + chr6_1:90476695-90476714 None:intergenic 65.0%
TCCTTGAGGGAGGCCCAGCT+AGG - chr6_1:90476695-90476714 Msa0897890:CDS 65.0%
ACCTAGCTGGGCCTCCCTCA+AGG + chr6_1:90476699-90476718 None:intergenic 65.0%
AATCAGGGCCGGCCTTGAGG+GGG + chr6_1:90476735-90476754 None:intergenic 65.0%
!! ACGGGTCGGGTGGGCTAAAC+TGG - chr6_1:90477584-90477603 Msa0897890:intron 65.0%
GACTCGGCAAGGTCAGTGGG+CGG + chr6_1:90477619-90477638 None:intergenic 65.0%
GTTCGGGCAGGCTACTGGAC+CGG + chr6_1:90477672-90477691 None:intergenic 65.0%
CAGCTGTTCGGGCAGGCTAC+TGG + chr6_1:90477677-90477696 None:intergenic 65.0%
! ACCGGAGGGTGCAGCTGTTC+GGG + chr6_1:90477688-90477707 None:intergenic 65.0%
AAAACCCCGACCGACCCGGT+TGG + chr6_1:90477718-90477737 None:intergenic 65.0%
! GAGGGTGCAGCTGTTCGGGC+AGG + chr6_1:90477684-90477703 None:intergenic 70.0%
GCCCGAACAGCTGCACCCTC+CGG - chr6_1:90477684-90477703 Msa0897890:intron 70.0%
CAGCTGCACCCTCCGGTTCC+CGG - chr6_1:90477691-90477710 Msa0897890:intron 70.0%
CGGTTGGACCGGGAACCGGA+GGG + chr6_1:90477702-90477721 None:intergenic 70.0%
CCTCCGGTTCCCGGTCCAAC+CGG - chr6_1:90477700-90477719 Msa0897890:intron 70.0%
CTCCGGTTCCCGGTCCAACC+GGG - chr6_1:90477701-90477720 Msa0897890:intron 70.0%
GACCCGGTTGGACCGGGAAC+CGG + chr6_1:90477706-90477725 None:intergenic 70.0%
GGTTCCCGGTCCAACCGGGT+CGG - chr6_1:90477705-90477724 Msa0897890:intron 70.0%
! GAGGGTGCAGCTGTTCGGGC+AGG + chr6_1:90477684-90477703 None:intergenic 70.0%
GCCCGAACAGCTGCACCCTC+CGG - chr6_1:90477684-90477703 Msa0897890:intron 70.0%
CAGCTGCACCCTCCGGTTCC+CGG - chr6_1:90477691-90477710 Msa0897890:intron 70.0%
CGGTTGGACCGGGAACCGGA+GGG + chr6_1:90477702-90477721 None:intergenic 70.0%
CCTCCGGTTCCCGGTCCAAC+CGG - chr6_1:90477700-90477719 Msa0897890:intron 70.0%
CTCCGGTTCCCGGTCCAACC+GGG - chr6_1:90477701-90477720 Msa0897890:intron 70.0%
GACCCGGTTGGACCGGGAAC+CGG + chr6_1:90477706-90477725 None:intergenic 70.0%
GGTTCCCGGTCCAACCGGGT+CGG - chr6_1:90477705-90477724 Msa0897890:intron 70.0%
CCGGTTGGACCGGGAACCGG+AGG + chr6_1:90477703-90477722 None:intergenic 75.0%
CCGACCGACCCGGTTGGACC+GGG + chr6_1:90477712-90477731 None:intergenic 75.0%
CCCGGTCCAACCGGGTCGGT+CGG - chr6_1:90477709-90477728 Msa0897890:intron 75.0%
CCCGACCGACCCGGTTGGAC+CGG + chr6_1:90477713-90477732 None:intergenic 75.0%
CCGGTCCAACCGGGTCGGTC+GGG - chr6_1:90477710-90477729 Msa0897890:intron 75.0%
CGGTCCAACCGGGTCGGTCG+GGG - chr6_1:90477711-90477730 Msa0897890:intron 75.0%
CCGGTTGGACCGGGAACCGG+AGG + chr6_1:90477703-90477722 None:intergenic 75.0%
CCGACCGACCCGGTTGGACC+GGG + chr6_1:90477712-90477731 None:intergenic 75.0%
CCCGGTCCAACCGGGTCGGT+CGG - chr6_1:90477709-90477728 Msa0897890:intron 75.0%
CCCGACCGACCCGGTTGGAC+CGG + chr6_1:90477713-90477732 None:intergenic 75.0%
CCGGTCCAACCGGGTCGGTC+GGG - chr6_1:90477710-90477729 Msa0897890:intron 75.0%
CGGTCCAACCGGGTCGGTCG+GGG - chr6_1:90477711-90477730 Msa0897890:intron 75.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 90475481 90479585 90475481 ID=Msa0897890;Name=Msa0897890
chr6_1 mRNA 90475481 90479585 90475481 ID=Msa0897890-mRNA-1;Parent=Msa0897890;Name=Msa0897890-mRNA-1;_AED=0.35;_eAED=0.35;_QI=133|1|0.66|1|0|0|3|0|313
chr6_1 exon 90475481 90475575 90475481 ID=Msa0897890-mRNA-1:exon:15406;Parent=Msa0897890-mRNA-1
chr6_1 exon 90476187 90477055 90476187 ID=Msa0897890-mRNA-1:exon:15405;Parent=Msa0897890-mRNA-1
chr6_1 exon 90479475 90479585 90479475 ID=Msa0897890-mRNA-1:exon:15404;Parent=Msa0897890-mRNA-1
chr6_1 five_prime_UTR 90479475 90479585 90479475 ID=Msa0897890-mRNA-1:five_prime_utr;Parent=Msa0897890-mRNA-1
chr6_1 five_prime_UTR 90477034 90477055 90477034 ID=Msa0897890-mRNA-1:five_prime_utr;Parent=Msa0897890-mRNA-1
chr6_1 CDS 90476187 90477033 90476187 ID=Msa0897890-mRNA-1:cds;Parent=Msa0897890-mRNA-1
chr6_1 CDS 90475481 90475575 90475481 ID=Msa0897890-mRNA-1:cds;Parent=Msa0897890-mRNA-1
Gene Sequence

>Msa0897890

ATGCTAGAAGAAACTAGGAACATCGCTTTGGAGCGTTCTTCTCGGATGCCTCCGCTTCCTTTTCTACCTTCGTTTTCTTTCATCATCAACACATTTCTCTTCCTTCCACTCTTCTTCTTAAGTCAATTTCAAAAACATGCCACTACTAATGCTGTGTCCACCACATCTTGTGAACCTTTTGGATGTGGAAATTTCAGCGATATTAGCTACCCATTCTGGAGTCTTAACATCCAACCAAGTTATTGCGGTCATCCAAACTTCAAGCTTGATTGTCAACATGGCAACTTAACTATTAACATCAAGTCCCAAAAGTTTCACATCCTTCATATAAATCAAATGTCTCAACTTTTGAGGATTGTAAGGGACGATTTATGGAGTTATGATGTTGATGTTGTGCATTCTTGTCCGAAGCAATATATTGATGTAAACTTAGATTTGCATTTCTTCAAGTACACTTCTAACAATGAAAACTATACTCTATTGTACGAGTGTGGTCTTCGTCCAAACTCAAACTCCTCTACGTTGAGTTCTGAAGTTTCTGAAGTGATTTCTTGCCTCATGGAGGGTAAAACTCGTGATGCATACCTAGTTTCAAGTGACAAATTGGTTGATTTCAATGTTATGGAGTGTAAGAATAGTATCACCTTTCCTGGCTTGAAGAATTCATTGACAAATGACTCGGATGTTTTAGGTGAAGGATTTGAGGTTGGGTGGAGTGGTGTGGGAGAAGAAATATGTGGTGGTTGCATGAAATCTGGTAGGAAATGCGGATACAATACATCAGAAAATTCAGTTATGTGTCTCTTGCCGGAGAAATCCATTGCAGATGGAGTAACATCATCAAATGCCAATGTTCTAACAGATTCCTACATGATGTTTCTACTATTGTTGCACAGAGAAGCATTTGAGCAGGCAAGCGAAAATGAAAATCATTCTAGGTGA

Protein sequence

>Msa0897890

MLEETRNIALERSSRMPPLPFLPSFSFIINTFLFLPLFFLSQFQKHATTNAVSTTSCEPFGCGNFSDISYPFWSLNIQPSYCGHPNFKLDCQHGNLTINIKSQKFHILHINQMSQLLRIVRDDLWSYDVDVVHSCPKQYIDVNLDLHFFKYTSNNENYTLLYECGLRPNSNSSTLSSEVSEVISCLMEGKTRDAYLVSSDKLVDFNVMECKNSITFPGLKNSLTNDSDVLGEGFEVGWSGVGEEICGGCMKSGRKCGYNTSENSVMCLLPEKSIADGVTSSNANVLTDSYMMFLLLLHREAFEQASENENHSR*