Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0998050 | PNX89585.1 | 80.258 | 233 | 38 | 3 | 77 | 303 | 3 | 233 | 1.64e-127 | 374 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0998050 | sp|F4HQ23|LRL27_ARATH | 30.328 | 244 | 133 | 11 | 66 | 289 | 240 | 466 | 5.55e-14 | 76.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0998050 | A0A2K3MFL6 | 80.258 | 233 | 38 | 3 | 77 | 303 | 3 | 233 | 7.84e-128 | 374 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0897860 | Msa0998050 | 0.827249 | 1.736193e-54 | -8.615850e-47 |
| Msa0897890 | Msa0998050 | 0.833802 | 4.324719e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0998050 | MtrunA17_Chr6g0483791 | 63.985 | 261 | 87 | 2 | 38 | 294 | 1 | 258 | 1.16e-106 | 326 |
| Msa0998050 | MtrunA17_Chr6g0483851 | 61.798 | 267 | 94 | 3 | 37 | 298 | 5 | 268 | 1.58e-106 | 327 |
| Msa0998050 | MtrunA17_Chr6g0483921 | 56.679 | 277 | 112 | 3 | 38 | 308 | 1 | 275 | 3.01e-102 | 304 |
| Msa0998050 | MtrunA17_Chr8g0391231 | 28.315 | 279 | 177 | 13 | 47 | 316 | 5 | 269 | 2.95e-20 | 91.7 |
| Msa0998050 | MtrunA17_Chr7g0251131 | 27.381 | 252 | 158 | 7 | 44 | 289 | 1 | 233 | 5.86e-20 | 87.8 |
| Msa0998050 | MtrunA17_Chr7g0251011 | 24.910 | 277 | 183 | 7 | 50 | 320 | 10 | 267 | 3.04e-19 | 86.3 |
| Msa0998050 | MtrunA17_Chr8g0376061 | 29.778 | 225 | 134 | 10 | 80 | 295 | 34 | 243 | 4.72e-17 | 82.0 |
| Msa0998050 | MtrunA17_Chr7g0251061 | 29.258 | 229 | 127 | 12 | 82 | 295 | 47 | 255 | 3.07e-12 | 67.4 |
| Msa0998050 | MtrunA17_Chr6g0483911 | 26.357 | 258 | 152 | 11 | 59 | 297 | 8 | 246 | 7.70e-12 | 65.1 |
| Msa0998050 | MtrunA17_Chr6g0483801 | 25.108 | 231 | 141 | 9 | 78 | 295 | 37 | 248 | 3.44e-11 | 62.8 |
| Msa0998050 | MtrunA17_Chr7g0251121 | 27.481 | 262 | 156 | 12 | 42 | 289 | 3 | 244 | 8.22e-11 | 63.2 |
| Msa0998050 | MtrunA17_Chr1g0212811 | 30.882 | 204 | 120 | 9 | 86 | 279 | 41 | 233 | 8.69e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0998050 | AT1G66930.2 | 30.328 | 244 | 133 | 11 | 66 | 289 | 240 | 466 | 5.64e-15 | 76.6 |
| Msa0998050 | AT1G66930.3 | 30.041 | 243 | 133 | 11 | 66 | 288 | 59 | 284 | 9.24e-15 | 75.5 |
| Msa0998050 | AT1G66930.1 | 30.041 | 243 | 133 | 11 | 66 | 288 | 59 | 284 | 9.47e-15 | 75.5 |
| Msa0998050 | AT1G18390.2 | 26.991 | 226 | 139 | 8 | 78 | 293 | 33 | 242 | 1.07e-14 | 75.5 |
| Msa0998050 | AT1G66880.3 | 29.907 | 214 | 116 | 9 | 79 | 283 | 33 | 221 | 1.18e-13 | 72.4 |
| Msa0998050 | AT1G66880.2 | 29.907 | 214 | 116 | 9 | 79 | 283 | 33 | 221 | 1.64e-13 | 72.0 |
| Msa0998050 | AT1G66880.1 | 29.524 | 210 | 115 | 8 | 82 | 283 | 416 | 600 | 2.27e-13 | 71.6 |
| Msa0998050 | AT1G66880.1 | 26.961 | 204 | 120 | 8 | 84 | 281 | 26 | 206 | 2.95e-11 | 65.1 |
| Msa0998050 | AT5G38260.1 | 26.996 | 263 | 147 | 12 | 46 | 289 | 11 | 247 | 2.81e-13 | 71.2 |
| Msa0998050 | AT1G67000.1 | 31.081 | 222 | 130 | 10 | 80 | 289 | 256 | 466 | 2.84e-13 | 71.2 |
Find 63 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATTGTAAGGGACGATTTA+TGG | 0.170227 | 6_4:-78433025 | Msa0998050:CDS |
| GCGATATTAGCTACCCATTC+TGG | 0.203275 | 6_4:-78433181 | Msa0998050:CDS |
| ATTGGTTGATTTCAATGTTA+TGG | 0.260052 | 6_4:-78432775 | Msa0998050:CDS |
| TATGAAGGATGTGAAACTTT+TGG | 0.265817 | 6_4:+78433072 | None:intergenic |
| CCTAGTTTCAAGTGACAAAT+TGG | 0.292169 | 6_4:-78432793 | Msa0998050:CDS |
| ACCACATCTTGTGAACCTTT+TGG | 0.312693 | 6_4:-78433218 | Msa0998050:CDS |
| GCGAAAATGAAAATCATTCT+AGG | 0.313685 | 6_4:-78431850 | Msa0998050:CDS |
| TTCAGTTATGTGTCTCTTGC+CGG | 0.319841 | 6_4:-78432589 | Msa0998050:CDS |
| GCTTAACAAGGATGCATTAC+AGG | 0.327248 | 6_4:-78434846 | Msa0998050:intron |
| AACGTAGAGGAGTTTGAGTT+TGG | 0.343075 | 6_4:+78432876 | None:intergenic |
| CTTAGATTTGCATTTCTTCA+AGG | 0.356401 | 6_4:-78432949 | Msa0998050:CDS |
| TAGGTGAAGGATTTGAGGTT+AGG | 0.367591 | 6_4:-78432689 | Msa0998050:CDS |
| AAGAATAGTATCACCTTTCC+TGG | 0.384015 | 6_4:-78432747 | Msa0998050:CDS |
| GAGACATTTGATTTATATGA+AGG | 0.409674 | 6_4:+78433057 | None:intergenic |
| TCGCTTTGGAGTGTTCTTCT+CGG | 0.410403 | 6_4:-78433355 | Msa0998050:CDS |
| TGACAATCAAGCTTGAAGTT+TGG | 0.421038 | 6_4:+78433125 | None:intergenic |
| GTCAATGAATTCTTCAAGCC+AGG | 0.429363 | 6_4:+78432729 | None:intergenic |
| TGAAGTGATTTCTTGCCTCA+TGG | 0.433114 | 6_4:-78432838 | Msa0998050:CDS |
| TGAGGTTAGGTGGAGTGGTG+TGG | 0.437968 | 6_4:-78432676 | Msa0998050:CDS |
| AAAGAAAACGAAGGTAGAAA+AGG | 0.443625 | 6_4:+78433320 | None:intergenic |
| CCAATTTGTCACTTGAAACT+AGG | 0.446574 | 6_4:+78432793 | None:intergenic |
| TTTACATCAATATATTGCTT+CGG | 0.447673 | 6_4:+78432972 | None:intergenic |
| AGAAACTAGGAACATCGCTT+TGG | 0.474174 | 6_4:-78433369 | Msa0998050:CDS |
| TTTGGATGACCGCAATAACT+TGG | 0.483437 | 6_4:+78433143 | None:intergenic |
| GACTTAAGAAGAAGAGTGGA+AGG | 0.485625 | 6_4:+78433276 | None:intergenic |
| CTGAAATTTCCACATCCAAA+AGG | 0.487786 | 6_4:+78433203 | None:intergenic |
| GAGGTTAGGTGGAGTGGTGT+GGG | 0.491199 | 6_4:-78432675 | Msa0998050:CDS |
| GTGAAGGATTTGAGGTTAGG+TGG | 0.491523 | 6_4:-78432686 | Msa0998050:CDS |
| GTCTATCTATTGCCATCAAA+AGG | 0.494189 | 6_4:-78434868 | Msa0998050:CDS |
| GATGACCGCAATAACTTGGT+TGG | 0.500075 | 6_4:+78433147 | None:intergenic |
| AATTGACTTAAGAAGAAGAG+TGG | 0.504168 | 6_4:+78433272 | None:intergenic |
| TGTGGTGGTTGCATGAAATC+TGG | 0.506044 | 6_4:-78432642 | Msa0998050:CDS |
| CCATCTGCCATGGATTTCTC+CGG | 0.525776 | 6_4:+78432570 | None:intergenic |
| GATGGAGTAACATCATCAAA+TGG | 0.529485 | 6_4:-78432552 | Msa0998050:intron |
| GCACAGAGAAGCATTTGAGC+AGG | 0.540476 | 6_4:-78431876 | Msa0998050:CDS |
| GGGAAATGCTAGAAGAAACT+AGG | 0.548819 | 6_4:-78433382 | Msa0998050:CDS |
| GGATTTGAGGTTAGGTGGAG+TGG | 0.555342 | 6_4:-78432681 | Msa0998050:CDS |
| CCGGAGAAATCCATGGCAGA+TGG | 0.557417 | 6_4:-78432570 | Msa0998050:CDS |
| GGATGTTAAGACTCCAGAAT+GGG | 0.565498 | 6_4:+78433168 | None:intergenic |
| GTAGGAATCTGTTAGAACAT+TGG | 0.566351 | 6_4:+78431919 | None:intergenic |
| AACGAAGGTAGAAAAGGAAG+CGG | 0.568895 | 6_4:+78433326 | None:intergenic |
| TCCAAAAGGTTCACAAGATG+TGG | 0.579964 | 6_4:+78433217 | None:intergenic |
| TTCAAGCTTGATTGTCAACA+TGG | 0.587950 | 6_4:-78433119 | Msa0998050:CDS |
| GTGATTTCTTGCCTCATGGA+GGG | 0.587986 | 6_4:-78432834 | Msa0998050:CDS |
| TGATGTTACTCCATCTGCCA+TGG | 0.590101 | 6_4:+78432560 | None:intergenic |
| TGCCATCAAAAGGCTTAACA+AGG | 0.593022 | 6_4:-78434858 | Msa0998050:CDS |
| TGGATGTTAAGACTCCAGAA+TGG | 0.599363 | 6_4:+78433167 | None:intergenic |
| TGAATTCTTCAAGCCAGGAA+AGG | 0.602825 | 6_4:+78432734 | None:intergenic |
| AACATCCAACCAAGTTATTG+CGG | 0.605269 | 6_4:-78433152 | Msa0998050:CDS |
| CAATAGTAGAAACATCATGT+AGG | 0.608568 | 6_4:+78431901 | None:intergenic |
| TCTCTTGCCGGAGAAATCCA+TGG | 0.611162 | 6_4:-78432577 | Msa0998050:CDS |
| AAAAGGTTCACAAGATGTGG+TGG | 0.620771 | 6_4:+78433220 | None:intergenic |
| GAATTCATTGACAAATGACT+CGG | 0.637714 | 6_4:-78432718 | Msa0998050:CDS |
| AGTGATTTCTTGCCTCATGG+AGG | 0.643094 | 6_4:-78432835 | Msa0998050:CDS |
| ATGAAATCTGGTAGGAAATG+CGG | 0.644240 | 6_4:-78432630 | Msa0998050:CDS |
| GAAGGTAGAAAAGGAAGCGG+AGG | 0.652700 | 6_4:+78433329 | None:intergenic |
| TATACTCTATTGTACGAGTG+TGG | 0.664109 | 6_4:-78432906 | Msa0998050:CDS |
| AACTTCAGAACTCAACGTAG+AGG | 0.677319 | 6_4:+78432863 | None:intergenic |
| GTGGTTGCATGAAATCTGGT+AGG | 0.685356 | 6_4:-78432638 | Msa0998050:CDS |
| GGTGGACACAGCATTAGTAG+TGG | 0.686937 | 6_4:+78433238 | None:intergenic |
| GGTGTGGGAGAAGAAATATG+TGG | 0.752804 | 6_4:-78432660 | Msa0998050:CDS |
| GTGGGAGAAGAAATATGTGG+TGG | 0.753774 | 6_4:-78432657 | Msa0998050:CDS |
| TTGATGATGAAAGAAAACGA+AGG | 0.776756 | 6_4:+78433311 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAAAAAAAAAAAAAAA+AGG | - | chr6_4:78432880-78432899 | Msa0998050:CDS | 0.0% |
| !!! | ATAAATATTTTTATATAGAC+CGG | + | chr6_4:78432295-78432314 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAAGGAAAA+CGG | - | chr6_4:78432887-78432906 | Msa0998050:CDS | 10.0% |
| !!! | TTTTGTTGAAATAAAAAATT+GGG | + | chr6_4:78433074-78433093 | None:intergenic | 10.0% |
| !!! | TTTTTGTTGAAATAAAAAAT+TGG | + | chr6_4:78433075-78433094 | None:intergenic | 10.0% |
| !!! | TAAATATTTTTATATAGACC+GGG | + | chr6_4:78432294-78432313 | None:intergenic | 15.0% |
| !!! | TTCATTCATAATGTAATTTT+GGG | + | chr6_4:78432320-78432339 | None:intergenic | 15.0% |
| !!! | TTTCATTCATAATGTAATTT+TGG | + | chr6_4:78432321-78432340 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAAGGAAAAC+GGG | - | chr6_4:78432888-78432907 | Msa0998050:CDS | 15.0% |
| !! | ATTATGAAGAAAATAACAAA+TGG | + | chr6_4:78433216-78433235 | None:intergenic | 15.0% |
| !!! | CTTGTATTTTAACTTTAAAT+AGG | - | chr6_4:78433237-78433256 | Msa0998050:CDS | 15.0% |
| !!! | TTTTAGGAAATATATGTAAA+AGG | - | chr6_4:78433326-78433345 | Msa0998050:CDS | 15.0% |
| !! | TTTAGGAAATATATGTAAAA+GGG | - | chr6_4:78433327-78433346 | Msa0998050:CDS | 15.0% |
| !! | TGCATATAACTTTAAACTAA+GGG | + | chr6_4:78431972-78431991 | None:intergenic | 20.0% |
| !! | AATATTAGAACTTATTTGTG+AGG | + | chr6_4:78432519-78432538 | None:intergenic | 20.0% |
| !!! | TTTTTATTTCGAACTTACTT+GGG | + | chr6_4:78432664-78432683 | None:intergenic | 20.0% |
| !!! | TTTTTTATTTCGAACTTACT+TGG | + | chr6_4:78432665-78432684 | None:intergenic | 20.0% |
| !! | AATATTAGAACTTATTTGTG+AGG | + | chr6_4:78432519-78432538 | None:intergenic | 20.0% |
| !! | TTAGGAAATATATGTAAAAG+GGG | - | chr6_4:78433328-78433347 | Msa0998050:CDS | 20.0% |
| !! | TTTACATCAATATATTGCTT+CGG | + | chr6_4:78433762-78433781 | None:intergenic | 20.0% |
| !!! | ACATATTCATAAGATGTTTT+AGG | - | chr6_4:78434292-78434311 | Msa0998050:intron | 20.0% |
| !!! | TATTTTAAGAATGAGGATAA+AGG | + | chr6_4:78434464-78434483 | None:intergenic | 20.0% |
| !!! | GAAATCATATTTTAAGAATG+AGG | + | chr6_4:78434471-78434490 | None:intergenic | 20.0% |
| ! | ATATAACTTTAAACTAAGGG+TGG | + | chr6_4:78431969-78431988 | None:intergenic | 25.0% |
| ! | GTGCATATAACTTTAAACTA+AGG | + | chr6_4:78431973-78431992 | None:intergenic | 25.0% |
| !!! | TAGATTTTTTTTTCCTACCT+TGG | - | chr6_4:78432021-78432040 | Msa0998050:intron | 25.0% |
| !!! | ATTTTTTGTAGAAATAGCCA+AGG | + | chr6_4:78432041-78432060 | None:intergenic | 25.0% |
| ! | AAGAATTAGAAACAACATAC+TGG | - | chr6_4:78432085-78432104 | Msa0998050:intron | 25.0% |
| ! | TGTATGAGCTAATTTGAATT+TGG | + | chr6_4:78432471-78432490 | None:intergenic | 25.0% |
| !! | TAGTATGTTCTAAACATTGT+TGG | - | chr6_4:78432559-78432578 | Msa0998050:CDS | 25.0% |
| !! | TAGTATGTTCTAAACATTGT+TGG | - | chr6_4:78432559-78432578 | Msa0998050:CDS | 25.0% |
| ! | AAGAATCTTGCATATATGAA+TGG | + | chr6_4:78433152-78433171 | None:intergenic | 25.0% |
| ! | TAGGAAATATATGTAAAAGG+GGG | - | chr6_4:78433329-78433348 | Msa0998050:CDS | 25.0% |
| !! | GAGACATTTGATTTATATGA+AGG | + | chr6_4:78433677-78433696 | None:intergenic | 25.0% |
| !! | ATTGGTTGATTTCAATGTTA+TGG | - | chr6_4:78433956-78433975 | Msa0998050:intron | 25.0% |
| ! | GAAGAATCTAATAAAATGTC+AGG | + | chr6_4:78434218-78434237 | None:intergenic | 25.0% |
| ! | GAATATGTGATAAACTAGTT+TGG | + | chr6_4:78434280-78434299 | None:intergenic | 25.0% |
| !!! | TAAGATGTTTTAGGATTTTG+TGG | - | chr6_4:78434301-78434320 | Msa0998050:intron | 25.0% |
| !!! | GATTTTGTGGATTGATTTAA+TGG | - | chr6_4:78434314-78434333 | Msa0998050:intron | 25.0% |
| TAATGCTGCAAACAAACATA+TGG | - | chr6_4:78431924-78431943 | Msa0998050:intron | 30.0% | |
| !!! | CGGGTTTTAAAACATTGATT+GGG | + | chr6_4:78432194-78432213 | None:intergenic | 30.0% |
| !!! | CCAATCAATGTTTTAAAACC+CGG | - | chr6_4:78432192-78432211 | Msa0998050:intron | 30.0% |
| GAGCTAATTTGAATTTGGAT+TGG | + | chr6_4:78432466-78432485 | None:intergenic | 30.0% | |
| ACTATGTTTCGAACTTACTT+GGG | + | chr6_4:78432833-78432852 | None:intergenic | 30.0% | |
| AAAAAAAAAGGAAAACGGGT+CGG | - | chr6_4:78432892-78432911 | Msa0998050:CDS | 30.0% | |
| TGACTATCAATTTCGTAGAT+AGG | - | chr6_4:78433180-78433199 | Msa0998050:CDS | 30.0% | |
| GACTATCAATTTCGTAGATA+GGG | - | chr6_4:78433181-78433200 | Msa0998050:CDS | 30.0% | |
| ACATATTGCTGCAAATTTGA+AGG | + | chr6_4:78433264-78433283 | None:intergenic | 30.0% | |
| ! | CTGATACACATTCTGATTTT+AGG | - | chr6_4:78433310-78433329 | Msa0998050:CDS | 30.0% |
| AAAGAAAACGAAGGTAGAAA+AGG | + | chr6_4:78433414-78433433 | None:intergenic | 30.0% | |
| !! | TTGATGATGAAAGAAAACGA+AGG | + | chr6_4:78433423-78433442 | None:intergenic | 30.0% |
| ! | AATTGACTTAAGAAGAAGAG+TGG | + | chr6_4:78433462-78433481 | None:intergenic | 30.0% |
| ! | ATGAAGGATGTGAAACTTTT+GGG | + | chr6_4:78433661-78433680 | None:intergenic | 30.0% |
| ! | TATGAAGGATGTGAAACTTT+TGG | + | chr6_4:78433662-78433681 | None:intergenic | 30.0% |
| ! | ATCAAATGTCTCAACTTTTG+AGG | - | chr6_4:78433685-78433704 | Msa0998050:intron | 30.0% |
| !! | TCAACTTTTGAGGATTGTAA+GGG | - | chr6_4:78433695-78433714 | Msa0998050:intron | 30.0% |
| CTTAGATTTGCATTTCTTCA+AGG | - | chr6_4:78433782-78433801 | Msa0998050:intron | 30.0% | |
| GAATTCATTGACAAATGACT+CGG | - | chr6_4:78434013-78434032 | Msa0998050:intron | 30.0% | |
| AGTTAACATGTCACAATACA+AGG | - | chr6_4:78434379-78434398 | Msa0998050:intron | 30.0% | |
| AGGCAAATAGAAATAGGAAT+GGG | + | chr6_4:78434625-78434644 | None:intergenic | 30.0% | |
| CAATAGTAGAAACATCATGT+AGG | + | chr6_4:78434833-78434852 | None:intergenic | 30.0% | |
| GCGAAAATGAAAATCATTCT+AGG | - | chr6_4:78434881-78434900 | Msa0998050:CDS | 30.0% | |
| GTCTATCTATTGCCATCAAA+AGG | - | chr6_4:78431863-78431882 | Msa0998050:CDS | 35.0% | |
| ! | ATCCTTGTTAAGCCTTTTGA+TGG | + | chr6_4:78431878-78431897 | None:intergenic | 35.0% |
| TTTGTAGAAATAGCCAAGGT+AGG | + | chr6_4:78432037-78432056 | None:intergenic | 35.0% | |
| !!! | CCGGGTTTTAAAACATTGAT+TGG | + | chr6_4:78432195-78432214 | None:intergenic | 35.0% |
| GACTATGTTCAGAACTTACT+TGG | + | chr6_4:78432612-78432631 | None:intergenic | 35.0% | |
| GACTATGTTCAGAACTTACT+TGG | + | chr6_4:78432612-78432631 | None:intergenic | 35.0% | |
| GACTATGTTTCGAACTTACT+TGG | + | chr6_4:78432834-78432853 | None:intergenic | 35.0% | |
| AAAAAAAAGGAAAACGGGTC+GGG | - | chr6_4:78432893-78432912 | Msa0998050:CDS | 35.0% | |
| CAGAATGTGTATCAGAACAA+TGG | + | chr6_4:78433305-78433324 | None:intergenic | 35.0% | |
| CTGAAATTTCCACATCCAAA+AGG | + | chr6_4:78433531-78433550 | None:intergenic | 35.0% | |
| AACATCCAACCAAGTTATTG+CGG | - | chr6_4:78433579-78433598 | Msa0998050:intron | 35.0% | |
| TGACAATCAAGCTTGAAGTT+TGG | + | chr6_4:78433609-78433628 | None:intergenic | 35.0% | |
| TTCAAGCTTGATTGTCAACA+TGG | - | chr6_4:78433612-78433631 | Msa0998050:intron | 35.0% | |
| !! | CTCAACTTTTGAGGATTGTA+AGG | - | chr6_4:78433694-78433713 | Msa0998050:intron | 35.0% |
| TATACTCTATTGTACGAGTG+TGG | - | chr6_4:78433825-78433844 | Msa0998050:intron | 35.0% | |
| ! | CCAATTTGTCACTTGAAACT+AGG | + | chr6_4:78433941-78433960 | None:intergenic | 35.0% |
| ! | CCTAGTTTCAAGTGACAAAT+TGG | - | chr6_4:78433938-78433957 | Msa0998050:intron | 35.0% |
| AAGAATAGTATCACCTTTCC+TGG | - | chr6_4:78433984-78434003 | Msa0998050:intron | 35.0% | |
| !! | ACAAATGACTCGGATGTTTT+AGG | - | chr6_4:78434023-78434042 | Msa0998050:intron | 35.0% |
| !! | TGTTTTAGGTGAAGGATTTG+AGG | - | chr6_4:78434037-78434056 | Msa0998050:intron | 35.0% |
| ATGAAATCTGGTAGGAAATG+CGG | - | chr6_4:78434101-78434120 | Msa0998050:intron | 35.0% | |
| GATGGAGTAACATCATCAAA+TGG | - | chr6_4:78434179-78434198 | Msa0998050:intron | 35.0% | |
| !! | TTTCCGAGCTTTAAATCCAA+CGG | - | chr6_4:78434510-78434529 | Msa0998050:intron | 35.0% |
| TGAGCAAGGTTTGTAAATAG+TGG | - | chr6_4:78434575-78434594 | Msa0998050:intron | 35.0% | |
| GAACTACAAACTTACGAGTA+GGG | + | chr6_4:78434602-78434621 | None:intergenic | 35.0% | |
| GGCAAATAGAAATAGGAATG+GGG | + | chr6_4:78434624-78434643 | None:intergenic | 35.0% | |
| GAGGCAAATAGAAATAGGAA+TGG | + | chr6_4:78434626-78434645 | None:intergenic | 35.0% | |
| ACTGAGAGGCAAATAGAAAT+AGG | + | chr6_4:78434631-78434650 | None:intergenic | 35.0% | |
| GTAGGAATCTGTTAGAACAT+TGG | + | chr6_4:78434815-78434834 | None:intergenic | 35.0% | |
| TGCCATCAAAAGGCTTAACA+AGG | - | chr6_4:78431873-78431892 | Msa0998050:CDS | 40.0% | |
| GCTTAACAAGGATGCATTAC+AGG | - | chr6_4:78431885-78431904 | Msa0998050:CDS | 40.0% | |
| ACAAGGATGCATTACAGGTA+TGG | - | chr6_4:78431890-78431909 | Msa0998050:CDS | 40.0% | |
| !!! | CAATGTTTTAAAACCCGGAC+TGG | - | chr6_4:78432197-78432216 | Msa0998050:intron | 40.0% |
| GGGAAATGCTAGAAGAAACT+AGG | - | chr6_4:78433349-78433368 | Msa0998050:CDS | 40.0% | |
| AGAAACTAGGAACATCGCTT+TGG | - | chr6_4:78433362-78433381 | Msa0998050:CDS | 40.0% | |
| AACGAAGGTAGAAAAGGAAG+CGG | + | chr6_4:78433408-78433427 | None:intergenic | 40.0% | |
| GACTTAAGAAGAAGAGTGGA+AGG | + | chr6_4:78433458-78433477 | None:intergenic | 40.0% | |
| AAAAGGTTCACAAGATGTGG+TGG | + | chr6_4:78433514-78433533 | None:intergenic | 40.0% | |
| ! | ACCACATCTTGTGAACCTTT+TGG | - | chr6_4:78433513-78433532 | Msa0998050:intron | 40.0% |
| TCCAAAAGGTTCACAAGATG+TGG | + | chr6_4:78433517-78433536 | None:intergenic | 40.0% | |
| ! | TCTTGTGAACCTTTTGGATG+TGG | - | chr6_4:78433519-78433538 | Msa0998050:intron | 40.0% |
| GGATGTTAAGACTCCAGAAT+GGG | + | chr6_4:78433566-78433585 | None:intergenic | 40.0% | |
| TGGATGTTAAGACTCCAGAA+TGG | + | chr6_4:78433567-78433586 | None:intergenic | 40.0% | |
| TTTGGATGACCGCAATAACT+TGG | + | chr6_4:78433591-78433610 | None:intergenic | 40.0% | |
| GGATTGTAAGGGACGATTTA+TGG | - | chr6_4:78433706-78433725 | Msa0998050:intron | 40.0% | |
| ! | AACGTAGAGGAGTTTGAGTT+TGG | + | chr6_4:78433858-78433877 | None:intergenic | 40.0% |
| AACTTCAGAACTCAACGTAG+AGG | + | chr6_4:78433871-78433890 | None:intergenic | 40.0% | |
| TGAAGTGATTTCTTGCCTCA+TGG | - | chr6_4:78433893-78433912 | Msa0998050:intron | 40.0% | |
| TGAATTCTTCAAGCCAGGAA+AGG | + | chr6_4:78434000-78434019 | None:intergenic | 40.0% | |
| GTCAATGAATTCTTCAAGCC+AGG | + | chr6_4:78434005-78434024 | None:intergenic | 40.0% | |
| ! | TAGGTGAAGGATTTGAGGTT+AGG | - | chr6_4:78434042-78434061 | Msa0998050:intron | 40.0% |
| TTCAGTTATGTGTCTCTTGC+CGG | - | chr6_4:78434142-78434161 | Msa0998050:intron | 40.0% | |
| ! | CGATACGTCTAGTTCATGTT+TGG | - | chr6_4:78434348-78434367 | Msa0998050:intron | 40.0% |
| GGAACTACAAACTTACGAGT+AGG | + | chr6_4:78434603-78434622 | None:intergenic | 40.0% | |
| !! | AATCATGGAGGTTTTCTGGT+GGG | + | chr6_4:78434655-78434674 | None:intergenic | 40.0% |
| ! | AAGGAATCATGGAGGTTTTC+TGG | + | chr6_4:78434659-78434678 | None:intergenic | 40.0% |
| CAGCTGGCTAATTGCATATC+CGG | - | chr6_4:78432972-78432991 | Msa0998050:CDS | 45.0% | |
| !! | TCGCTTTGGAGTGTTCTTCT+CGG | - | chr6_4:78433376-78433395 | Msa0998050:CDS | 45.0% |
| GCGATATTAGCTACCCATTC+TGG | - | chr6_4:78433550-78433569 | Msa0998050:intron | 45.0% | |
| GATGACCGCAATAACTTGGT+TGG | + | chr6_4:78433587-78433606 | None:intergenic | 45.0% | |
| AGTGATTTCTTGCCTCATGG+AGG | - | chr6_4:78433896-78433915 | Msa0998050:intron | 45.0% | |
| GTGATTTCTTGCCTCATGGA+GGG | - | chr6_4:78433897-78433916 | Msa0998050:intron | 45.0% | |
| !! | GACTCGGATGTTTTAGGTGA+AGG | - | chr6_4:78434029-78434048 | Msa0998050:intron | 45.0% |
| ! | GTGAAGGATTTGAGGTTAGG+TGG | - | chr6_4:78434045-78434064 | Msa0998050:intron | 45.0% |
| GGTGTGGGAGAAGAAATATG+TGG | - | chr6_4:78434071-78434090 | Msa0998050:intron | 45.0% | |
| GTGGGAGAAGAAATATGTGG+TGG | - | chr6_4:78434074-78434093 | Msa0998050:intron | 45.0% | |
| TGTGGTGGTTGCATGAAATC+TGG | - | chr6_4:78434089-78434108 | Msa0998050:intron | 45.0% | |
| GTGGTTGCATGAAATCTGGT+AGG | - | chr6_4:78434093-78434112 | Msa0998050:intron | 45.0% | |
| TGATGTTACTCCATCTGCCA+TGG | + | chr6_4:78434174-78434193 | None:intergenic | 45.0% | |
| ! | CGTCCGTTGGATTTAAAGCT+CGG | + | chr6_4:78434516-78434535 | None:intergenic | 45.0% |
| GATTACGAATTCACGTCCGT+TGG | + | chr6_4:78434529-78434548 | None:intergenic | 45.0% | |
| CTCAAGTACACTCTTGAGCA+AGG | - | chr6_4:78434561-78434580 | Msa0998050:intron | 45.0% | |
| ! | GAATCATGGAGGTTTTCTGG+TGG | + | chr6_4:78434656-78434675 | None:intergenic | 45.0% |
| AAGAGTCGCTGAAGGAATCA+TGG | + | chr6_4:78434670-78434689 | None:intergenic | 45.0% | |
| !!! | TTTTTAAAATATGATTTAAA+AGG | - | chr6_4:78432118-78432137 | Msa0998050:intron | 5.0% |
| !!! | TTTTAAAATATGATTTAAAA+GGG | - | chr6_4:78432119-78432138 | Msa0998050:intron | 5.0% |
| ATCCACTGTCTCTCGATCTG+TGG | - | chr6_4:78432143-78432162 | Msa0998050:intron | 50.0% | |
| ATCCACAGATCGAGAGACAG+TGG | + | chr6_4:78432148-78432167 | None:intergenic | 50.0% | |
| CGAACCAGTGGGTAACTAGT+CGG | - | chr6_4:78432253-78432272 | Msa0998050:intron | 50.0% | |
| CGGACGCATGAATATTGACC+CGG | - | chr6_4:78432273-78432292 | Msa0998050:intron | 50.0% | |
| AAAAAGGAAAACGGGTCGGG+TGG | - | chr6_4:78432896-78432915 | Msa0998050:CDS | 50.0% | |
| AAAAGGAAAACGGGTCGGGT+GGG | - | chr6_4:78432897-78432916 | Msa0998050:CDS | 50.0% | |
| !! | GGTGGGCTAAACTGGTTTAG+CGG | - | chr6_4:78432914-78432933 | Msa0998050:CDS | 50.0% |
| GCAATTAGCCAGCTGAAACC+CGG | + | chr6_4:78432967-78432986 | None:intergenic | 50.0% | |
| !!! | TTTTAAAACCCCGACCGACC+CGG | + | chr6_4:78433044-78433063 | None:intergenic | 50.0% |
| !!! | CGGTCGGGGTTTTAAAACAC+TGG | - | chr6_4:78433047-78433066 | Msa0998050:CDS | 50.0% |
| GAAGGTAGAAAAGGAAGCGG+AGG | + | chr6_4:78433405-78433424 | None:intergenic | 50.0% | |
| GGTGGACACAGCATTAGTAG+TGG | + | chr6_4:78433496-78433515 | None:intergenic | 50.0% | |
| ! | CACGAGTTTTACCCTCCATG+AGG | + | chr6_4:78433911-78433930 | None:intergenic | 50.0% |
| ! | GGATTTGAGGTTAGGTGGAG+TGG | - | chr6_4:78434050-78434069 | Msa0998050:intron | 50.0% |
| TCTCTTGCCGGAGAAATCCA+TGG | - | chr6_4:78434154-78434173 | Msa0998050:intron | 50.0% | |
| CCATCTGCCATGGATTTCTC+CGG | + | chr6_4:78434164-78434183 | None:intergenic | 50.0% | |
| AAGCTCGGAAATATCGCACG+AGG | + | chr6_4:78434501-78434520 | None:intergenic | 50.0% | |
| !! | GTTTTCTGGTGGGAACTGAG+AGG | + | chr6_4:78434645-78434664 | None:intergenic | 50.0% |
| AGTCGCTGAAGGAATCATGG+AGG | + | chr6_4:78434667-78434686 | None:intergenic | 50.0% | |
| AGCTGCATAAGAGTCGCTGA+AGG | + | chr6_4:78434678-78434697 | None:intergenic | 50.0% | |
| CAGCGACTCTTATGCAGCTT+AGG | - | chr6_4:78434679-78434698 | Msa0998050:intron | 50.0% | |
| !! | GCACAGAGAAGCATTTGAGC+AGG | - | chr6_4:78434855-78434874 | Msa0998050:CDS | 50.0% |
| ACTGGTGATCGACCTGGTCA+AGG | - | chr6_4:78432215-78432234 | Msa0998050:intron | 55.0% | |
| AGTGAACCAGTGCCTTGACC+AGG | + | chr6_4:78432230-78432249 | None:intergenic | 55.0% | |
| !! | TGGTCAAGGCACTGGTTCAC+TGG | - | chr6_4:78432229-78432248 | Msa0998050:intron | 55.0% |
| TGGTTCACTGGTCGAACCAG+TGG | - | chr6_4:78432241-78432260 | Msa0998050:intron | 55.0% | |
| GGTTCACTGGTCGAACCAGT+GGG | - | chr6_4:78432242-78432261 | Msa0998050:intron | 55.0% | |
| ! | TGTGACTCGGCAAGGTCAGT+GGG | + | chr6_4:78432944-78432963 | None:intergenic | 55.0% |
| AGCTGAAACCCGGTGTGACT+CGG | + | chr6_4:78432957-78432976 | None:intergenic | 55.0% | |
| TGAGGTTAGGTGGAGTGGTG+TGG | - | chr6_4:78434055-78434074 | Msa0998050:intron | 55.0% | |
| GAGGTTAGGTGGAGTGGTGT+GGG | - | chr6_4:78434056-78434075 | Msa0998050:intron | 55.0% | |
| CCGGAGAAATCCATGGCAGA+TGG | - | chr6_4:78434161-78434180 | Msa0998050:intron | 55.0% | |
| ACCAGGTCGATCACCAGTCC+GGG | + | chr6_4:78432213-78432232 | None:intergenic | 60.0% | |
| GACCAGGTCGATCACCAGTC+CGG | + | chr6_4:78432214-78432233 | None:intergenic | 60.0% | |
| GATCGACCTGGTCAAGGCAC+TGG | - | chr6_4:78432221-78432240 | Msa0998050:intron | 60.0% | |
| ! | GCGTCCGACTAGTTACCCAC+TGG | + | chr6_4:78432260-78432279 | None:intergenic | 60.0% |
| ! | GTGTGACTCGGCAAGGTCAG+TGG | + | chr6_4:78432945-78432964 | None:intergenic | 60.0% |
| CTGACCTTGCCGAGTCACAC+CGG | - | chr6_4:78432945-78432964 | Msa0998050:CDS | 60.0% | |
| TGACCTTGCCGAGTCACACC+GGG | - | chr6_4:78432946-78432965 | Msa0998050:CDS | 60.0% | |
| ! | AAACCCGGTGTGACTCGGCA+AGG | + | chr6_4:78432952-78432971 | None:intergenic | 60.0% |
| GAGTCACACCGGGTTTCAGC+TGG | - | chr6_4:78432956-78432975 | Msa0998050:CDS | 60.0% | |
| ! | AACCGGAGGGTGCAGCTGTT+CGG | + | chr6_4:78433011-78433030 | None:intergenic | 60.0% |
| !! | ACCCGGACTGGTGATCGACC+TGG | - | chr6_4:78432209-78432228 | Msa0998050:intron | 65.0% |
| !! | ACGGGTCGGGTGGGCTAAAC+TGG | - | chr6_4:78432906-78432925 | Msa0998050:CDS | 65.0% |
| GACTCGGCAAGGTCAGTGGG+CGG | + | chr6_4:78432941-78432960 | None:intergenic | 65.0% | |
| GTTCGGGCAGGCTACTGGAC+CGG | + | chr6_4:78432994-78433013 | None:intergenic | 65.0% | |
| CAGCTGTTCGGGCAGGCTAC+TGG | + | chr6_4:78432999-78433018 | None:intergenic | 65.0% | |
| ! | ACCGGAGGGTGCAGCTGTTC+GGG | + | chr6_4:78433010-78433029 | None:intergenic | 65.0% |
| AAAACCCCGACCGACCCGGT+TGG | + | chr6_4:78433040-78433059 | None:intergenic | 65.0% | |
| ! | GAGGGTGCAGCTGTTCGGGC+AGG | + | chr6_4:78433006-78433025 | None:intergenic | 70.0% |
| GCCCGAACAGCTGCACCCTC+CGG | - | chr6_4:78433006-78433025 | Msa0998050:CDS | 70.0% | |
| CAGCTGCACCCTCCGGTTCC+CGG | - | chr6_4:78433013-78433032 | Msa0998050:CDS | 70.0% | |
| CGGTTGGACCGGGAACCGGA+GGG | + | chr6_4:78433024-78433043 | None:intergenic | 70.0% | |
| CCTCCGGTTCCCGGTCCAAC+CGG | - | chr6_4:78433022-78433041 | Msa0998050:CDS | 70.0% | |
| CTCCGGTTCCCGGTCCAACC+GGG | - | chr6_4:78433023-78433042 | Msa0998050:CDS | 70.0% | |
| GACCCGGTTGGACCGGGAAC+CGG | + | chr6_4:78433028-78433047 | None:intergenic | 70.0% | |
| GGTTCCCGGTCCAACCGGGT+CGG | - | chr6_4:78433027-78433046 | Msa0998050:CDS | 70.0% | |
| CCGGTTGGACCGGGAACCGG+AGG | + | chr6_4:78433025-78433044 | None:intergenic | 75.0% | |
| CCGACCGACCCGGTTGGACC+GGG | + | chr6_4:78433034-78433053 | None:intergenic | 75.0% | |
| CCCGGTCCAACCGGGTCGGT+CGG | - | chr6_4:78433031-78433050 | Msa0998050:CDS | 75.0% | |
| CCCGACCGACCCGGTTGGAC+CGG | + | chr6_4:78433035-78433054 | None:intergenic | 75.0% | |
| CCGGTCCAACCGGGTCGGTC+GGG | - | chr6_4:78433032-78433051 | Msa0998050:CDS | 75.0% | |
| CGGTCCAACCGGGTCGGTCG+GGG | - | chr6_4:78433033-78433052 | Msa0998050:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 78431847 | 78434906 | 78431847 | ID=Msa0998050;Name=Msa0998050 |
| chr6_4 | mRNA | 78431847 | 78434906 | 78431847 | ID=Msa0998050-mRNA-1;Parent=Msa0998050;Name=Msa0998050-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0.5|0|0.66|0|0|3|0|335 |
| chr6_4 | exon | 78434847 | 78434906 | 78434847 | ID=Msa0998050-mRNA-1:exon:14821;Parent=Msa0998050-mRNA-1 |
| chr6_4 | exon | 78432553 | 78433405 | 78432553 | ID=Msa0998050-mRNA-1:exon:14820;Parent=Msa0998050-mRNA-1 |
| chr6_4 | exon | 78431847 | 78431941 | 78431847 | ID=Msa0998050-mRNA-1:exon:14819;Parent=Msa0998050-mRNA-1 |
| chr6_4 | CDS | 78434847 | 78434906 | 78434847 | ID=Msa0998050-mRNA-1:cds;Parent=Msa0998050-mRNA-1 |
| chr6_4 | CDS | 78432553 | 78433405 | 78432553 | ID=Msa0998050-mRNA-1:cds;Parent=Msa0998050-mRNA-1 |
| chr6_4 | CDS | 78431847 | 78431941 | 78431847 | ID=Msa0998050-mRNA-1:cds;Parent=Msa0998050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
