Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899440 | KEH27119.1 | 88.764 | 89 | 10 | 0 | 1 | 89 | 1 | 89 | 2.07e-45 | 154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899440 | A0A072UBD1 | 88.764 | 89 | 10 | 0 | 1 | 89 | 1 | 89 | 9.86e-46 | 154 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0899440 | Msa0927380 | 0.825041 | 5.817115e-54 | -8.615850e-47 |
| Msa0899440 | Msa0964900 | 0.800445 | 1.436455e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899440 | MtrunA17_Chr6g0485511 | 64.463 | 121 | 11 | 1 | 1 | 89 | 1 | 121 | 2.92e-42 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 34 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACATAACTGCCGGATTT+TGG | 0.214789 | 6_1:-94524648 | None:intergenic |
| CTTTCATTCTCCTGCTGGTT+TGG | 0.217472 | 6_1:-94522940 | None:intergenic |
| TTTATTTGAACTTCGGCTTT+TGG | 0.224067 | 6_1:-94522967 | None:intergenic |
| AAAGATCTTGGTTGCAAGTT+AGG | 0.294655 | 6_1:+94523767 | Msa0899440:CDS |
| AAGATATCTAGGCCAATTAT+TGG | 0.307387 | 6_1:+94524582 | Msa0899440:CDS |
| CTTGCGACGTAGCCAATAAT+TGG | 0.319802 | 6_1:-94524594 | None:intergenic |
| GACAGTCATTTGTGGAAGAT+TGG | 0.332380 | 6_1:-94524556 | None:intergenic |
| TTAGATGTACCTTCTTCATT+TGG | 0.332645 | 6_1:-94522904 | None:intergenic |
| GATTTCTTTCATTCTCCTGC+TGG | 0.344587 | 6_1:-94522945 | None:intergenic |
| ACAGTCATTTGTGGAAGATT+GGG | 0.408534 | 6_1:-94524555 | None:intergenic |
| AAATGAAGAAGGTACATCTA+AGG | 0.414920 | 6_1:+94522906 | Msa0899440:CDS |
| AACATGAATGAATCAGAGAT+AGG | 0.442335 | 6_1:+94523800 | Msa0899440:CDS |
| GTCGCAAGACCACCATATAC+TGG | 0.450719 | 6_1:+94524609 | Msa0899440:CDS |
| TGACTGTCAAGAAGATATCT+AGG | 0.467844 | 6_1:+94524571 | Msa0899440:CDS |
| ATCTTCTTGACAGTCATTTG+TGG | 0.474299 | 6_1:-94524564 | None:intergenic |
| TGATTCATTCATGTTATCAC+AGG | 0.480393 | 6_1:-94523792 | None:intergenic |
| TCGTCAATCACACTGCAAAC+AGG | 0.488932 | 6_1:-94522405 | None:intergenic |
| GGAGGGAAGCGGTTGAAGCC+AGG | 0.489916 | 6_1:-94522384 | None:intergenic |
| ACATGAATGAATCAGAGATA+GGG | 0.491217 | 6_1:+94523801 | Msa0899440:CDS |
| AAGAGATCTAGGCCAAAATC+CGG | 0.492005 | 6_1:+94524636 | Msa0899440:CDS |
| GATAGGGGAATTTGACATGA+AGG | 0.521863 | 6_1:+94523817 | Msa0899440:CDS |
| AGCTGTAGTTCCAAACCAGC+AGG | 0.537369 | 6_1:+94522930 | Msa0899440:CDS |
| AAGCGGTTGAAGCCAGGTGG+AGG | 0.539790 | 6_1:-94522378 | None:intergenic |
| CGTAATTTCTGAAGAACACC+AGG | 0.553769 | 6_1:+94524671 | Msa0899440:CDS |
| AAACCGCAAATGCCTCCACC+TGG | 0.558288 | 6_1:+94522366 | None:intergenic |
| ATGTGCAAGTGCAAAGATCT+TGG | 0.565232 | 6_1:+94523755 | Msa0899440:CDS |
| CACTGCAAACAGGAGGGAAG+CGG | 0.570902 | 6_1:-94522395 | None:intergenic |
| CATGAATGAATCAGAGATAG+GGG | 0.581799 | 6_1:+94523802 | Msa0899440:CDS |
| AATTACGTTGACATAACTGC+CGG | 0.582598 | 6_1:-94524655 | None:intergenic |
| CGAACTTTCTGCAGAACCCA+AGG | 0.585785 | 6_1:+94522425 | Msa0899440:CDS |
| GCTGAAGTTCCAAATGAAGA+AGG | 0.589203 | 6_1:+94522895 | Msa0899440:CDS |
| GGGAAGCGGTTGAAGCCAGG+TGG | 0.600438 | 6_1:-94522381 | None:intergenic |
| TCAATCACACTGCAAACAGG+AGG | 0.629072 | 6_1:-94522402 | None:intergenic |
| CAATCACACTGCAAACAGGA+GGG | 0.665161 | 6_1:-94522401 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTAAAGAACTCAATATA+TGG | - | chr6_1:94522534-94522553 | None:intergenic | 15.0% |
| !! | TTTATAATATAAGAGATTGA+TGG | - | chr6_1:94523215-94523234 | None:intergenic | 15.0% |
| !!! | TTTTTATCAATTTCAATTCT+CGG | + | chr6_1:94523364-94523383 | Msa0899440:intron | 15.0% |
| !!! | TCATTATTTTGATTTTATCA+AGG | + | chr6_1:94523461-94523480 | Msa0899440:intron | 15.0% |
| !!! | CATTATTTTGATTTTATCAA+GGG | + | chr6_1:94523462-94523481 | Msa0899440:intron | 15.0% |
| !! | ATGATATCATATAAATACTT+GGG | - | chr6_1:94523978-94523997 | None:intergenic | 15.0% |
| !!! | CAAATTATCATGATATTTTA+TGG | + | chr6_1:94524019-94524038 | Msa0899440:intron | 15.0% |
| !! | TTATTAAAGAACTCAATATA+TGG | - | chr6_1:94522534-94522553 | None:intergenic | 15.0% |
| !! | TTTATAATATAAGAGATTGA+TGG | - | chr6_1:94523215-94523234 | None:intergenic | 15.0% |
| !!! | TTTTTATCAATTTCAATTCT+CGG | + | chr6_1:94523364-94523383 | Msa0899440:intron | 15.0% |
| !!! | TCATTATTTTGATTTTATCA+AGG | + | chr6_1:94523461-94523480 | Msa0899440:intron | 15.0% |
| !!! | CATTATTTTGATTTTATCAA+GGG | + | chr6_1:94523462-94523481 | Msa0899440:intron | 15.0% |
| !! | ATGATATCATATAAATACTT+GGG | - | chr6_1:94523978-94523997 | None:intergenic | 15.0% |
| !!! | CAAATTATCATGATATTTTA+TGG | + | chr6_1:94524019-94524038 | Msa0899440:intron | 15.0% |
| !! | TGAAATGTTAACTAAGTTTA+TGG | + | chr6_1:94522460-94522479 | Msa0899440:intron | 20.0% |
| !! | GAAATGTTAACTAAGTTTAT+GGG | + | chr6_1:94522461-94522480 | Msa0899440:intron | 20.0% |
| !! | AAATGTTAACTAAGTTTATG+GGG | + | chr6_1:94522462-94522481 | Msa0899440:intron | 20.0% |
| !! | ATATGAGCAATAATAATGTA+AGG | - | chr6_1:94522594-94522613 | None:intergenic | 20.0% |
| !! | TAAGGATGATTCAATATATT+GGG | - | chr6_1:94523267-94523286 | None:intergenic | 20.0% |
| !! | ATAAGGATGATTCAATATAT+TGG | - | chr6_1:94523268-94523287 | None:intergenic | 20.0% |
| !! | ATATATTGAATCATCCTTAT+TGG | + | chr6_1:94523268-94523287 | Msa0899440:intron | 20.0% |
| !!! | AACTAAAGTGTTTTAATCTA+TGG | - | chr6_1:94523716-94523735 | None:intergenic | 20.0% |
| !! | GATGATATCATATAAATACT+TGG | - | chr6_1:94523979-94523998 | None:intergenic | 20.0% |
| !! | AATTAAGTGTTTCATCAAAT+AGG | + | chr6_1:94524056-94524075 | Msa0899440:intron | 20.0% |
| !!! | AAATTAAATTTGATAACAGG+TGG | - | chr6_1:94524484-94524503 | None:intergenic | 20.0% |
| !!! | CACAAATTAAATTTGATAAC+AGG | - | chr6_1:94524487-94524506 | None:intergenic | 20.0% |
| !! | TGAAATGTTAACTAAGTTTA+TGG | + | chr6_1:94522460-94522479 | Msa0899440:intron | 20.0% |
| !! | GAAATGTTAACTAAGTTTAT+GGG | + | chr6_1:94522461-94522480 | Msa0899440:intron | 20.0% |
| !! | AAATGTTAACTAAGTTTATG+GGG | + | chr6_1:94522462-94522481 | Msa0899440:intron | 20.0% |
| !! | ATATGAGCAATAATAATGTA+AGG | - | chr6_1:94522594-94522613 | None:intergenic | 20.0% |
| !! | TAAGGATGATTCAATATATT+GGG | - | chr6_1:94523267-94523286 | None:intergenic | 20.0% |
| !! | ATAAGGATGATTCAATATAT+TGG | - | chr6_1:94523268-94523287 | None:intergenic | 20.0% |
| !! | ATATATTGAATCATCCTTAT+TGG | + | chr6_1:94523268-94523287 | Msa0899440:intron | 20.0% |
| !!! | AACTAAAGTGTTTTAATCTA+TGG | - | chr6_1:94523716-94523735 | None:intergenic | 20.0% |
| !! | GATGATATCATATAAATACT+TGG | - | chr6_1:94523979-94523998 | None:intergenic | 20.0% |
| !! | AATTAAGTGTTTCATCAAAT+AGG | + | chr6_1:94524056-94524075 | Msa0899440:intron | 20.0% |
| !!! | AAATTAAATTTGATAACAGG+TGG | - | chr6_1:94524484-94524503 | None:intergenic | 20.0% |
| !!! | CACAAATTAAATTTGATAAC+AGG | - | chr6_1:94524487-94524506 | None:intergenic | 20.0% |
| !!! | AGAAAGAAGCTGATTTTAAA+AGG | + | chr6_1:94522800-94522819 | Msa0899440:CDS | 25.0% |
| !!! | GAAAGAAGCTGATTTTAAAA+GGG | + | chr6_1:94522801-94522820 | Msa0899440:CDS | 25.0% |
| !! | AACATCCTTTATTTGAACTT+CGG | - | chr6_1:94522977-94522996 | None:intergenic | 25.0% |
| ! | TGAAGGCTGTAAATAAAATT+AGG | + | chr6_1:94522996-94523015 | Msa0899440:intron | 25.0% |
| ! | ACACATTACGATAGTTATAT+AGG | - | chr6_1:94523152-94523171 | None:intergenic | 25.0% |
| ! | GTAATGTGTCTGTAATATTA+TGG | + | chr6_1:94523163-94523182 | Msa0899440:intron | 25.0% |
| ! | CTCTTATATTATAAATTGCG+TGG | + | chr6_1:94523220-94523239 | Msa0899440:intron | 25.0% |
| ! | ATATTATAAATTGCGTGGTT+CGG | + | chr6_1:94523225-94523244 | Msa0899440:intron | 25.0% |
| !! | TTGTCACTTAAAAACCAATA+AGG | - | chr6_1:94523285-94523304 | None:intergenic | 25.0% |
| !!! | AAGTGACAAGTTTTGATTTT+TGG | + | chr6_1:94523296-94523315 | Msa0899440:intron | 25.0% |
| ! | AAGATCAATCATCAATGTAT+AGG | + | chr6_1:94523411-94523430 | Msa0899440:intron | 25.0% |
| !! | GACATGATTTATTGTTGATT+TGG | + | chr6_1:94523570-94523589 | Msa0899440:intron | 25.0% |
| ! | CATTGTAAGAATCTCAAATT+TGG | + | chr6_1:94523851-94523870 | Msa0899440:intron | 25.0% |
| ! | GCATGAAAATTCAGTATATT+GGG | - | chr6_1:94524208-94524227 | None:intergenic | 25.0% |
| ! | AGCATGAAAATTCAGTATAT+TGG | - | chr6_1:94524209-94524228 | None:intergenic | 25.0% |
| !!! | AGAAAGAAGCTGATTTTAAA+AGG | + | chr6_1:94522800-94522819 | Msa0899440:CDS | 25.0% |
| !!! | GAAAGAAGCTGATTTTAAAA+GGG | + | chr6_1:94522801-94522820 | Msa0899440:CDS | 25.0% |
| !! | AACATCCTTTATTTGAACTT+CGG | - | chr6_1:94522977-94522996 | None:intergenic | 25.0% |
| ! | TGAAGGCTGTAAATAAAATT+AGG | + | chr6_1:94522996-94523015 | Msa0899440:intron | 25.0% |
| ! | ACACATTACGATAGTTATAT+AGG | - | chr6_1:94523152-94523171 | None:intergenic | 25.0% |
| ! | GTAATGTGTCTGTAATATTA+TGG | + | chr6_1:94523163-94523182 | Msa0899440:intron | 25.0% |
| ! | CTCTTATATTATAAATTGCG+TGG | + | chr6_1:94523220-94523239 | Msa0899440:intron | 25.0% |
| ! | ATATTATAAATTGCGTGGTT+CGG | + | chr6_1:94523225-94523244 | Msa0899440:intron | 25.0% |
| !! | TTGTCACTTAAAAACCAATA+AGG | - | chr6_1:94523285-94523304 | None:intergenic | 25.0% |
| !!! | AAGTGACAAGTTTTGATTTT+TGG | + | chr6_1:94523296-94523315 | Msa0899440:intron | 25.0% |
| ! | AAGATCAATCATCAATGTAT+AGG | + | chr6_1:94523411-94523430 | Msa0899440:intron | 25.0% |
| !! | GACATGATTTATTGTTGATT+TGG | + | chr6_1:94523570-94523589 | Msa0899440:intron | 25.0% |
| ! | CATTGTAAGAATCTCAAATT+TGG | + | chr6_1:94523851-94523870 | Msa0899440:intron | 25.0% |
| ! | GCATGAAAATTCAGTATATT+GGG | - | chr6_1:94524208-94524227 | None:intergenic | 25.0% |
| ! | AGCATGAAAATTCAGTATAT+TGG | - | chr6_1:94524209-94524228 | None:intergenic | 25.0% |
| TTCATGAAAAAACTTGCCTT+GGG | - | chr6_1:94522444-94522463 | None:intergenic | 30.0% | |
| TTTCATGAAAAAACTTGCCT+TGG | - | chr6_1:94522445-94522464 | None:intergenic | 30.0% | |
| TAAATTTAAAGAACTTGCCG+CGG | - | chr6_1:94522661-94522680 | None:intergenic | 30.0% | |
| AGATGAAAAAGCTACATCTA+AGG | + | chr6_1:94522870-94522889 | Msa0899440:CDS | 30.0% | |
| TTAGATGTACCTTCTTCATT+TGG | - | chr6_1:94522907-94522926 | None:intergenic | 30.0% | |
| ! | AAATGAAGAAGGTACATCTA+AGG | + | chr6_1:94522906-94522925 | Msa0899440:CDS | 30.0% |
| ! | TTTATTTGAACTTCGGCTTT+TGG | - | chr6_1:94522970-94522989 | None:intergenic | 30.0% |
| AAAAGCCGAAGTTCAAATAA+AGG | + | chr6_1:94522969-94522988 | Msa0899440:intron | 30.0% | |
| GTTCAAATAAAGGATGTTGA+AGG | + | chr6_1:94522979-94522998 | Msa0899440:intron | 30.0% | |
| TATTATAAATTGCGTGGTTC+GGG | + | chr6_1:94523226-94523245 | Msa0899440:intron | 30.0% | |
| ! | AAACTCACAGTATGTGTTTT+TGG | - | chr6_1:94523438-94523457 | None:intergenic | 30.0% |
| AATAACGAGGTTTCAAAAAG+TGG | + | chr6_1:94523610-94523629 | Msa0899440:intron | 30.0% | |
| ! | GTGCTCTAGATATAAATATC+AGG | + | chr6_1:94523662-94523681 | Msa0899440:intron | 30.0% |
| TGATTCATTCATGTTATCAC+AGG | - | chr6_1:94523795-94523814 | None:intergenic | 30.0% | |
| AACATGAATGAATCAGAGAT+AGG | + | chr6_1:94523800-94523819 | Msa0899440:CDS | 30.0% | |
| ACATGAATGAATCAGAGATA+GGG | + | chr6_1:94523801-94523820 | Msa0899440:CDS | 30.0% | |
| TACTTTGAGCTATTAGTTCA+AGG | + | chr6_1:94524146-94524165 | Msa0899440:intron | 30.0% | |
| ! | TCATGCTTTTATATCCAAGT+TGG | + | chr6_1:94524222-94524241 | Msa0899440:intron | 30.0% |
| ! | CATGCTTTTATATCCAAGTT+GGG | + | chr6_1:94524223-94524242 | Msa0899440:intron | 30.0% |
| ATTTACTATGCTTCAACTTG+TGG | + | chr6_1:94524256-94524275 | Msa0899440:intron | 30.0% | |
| TTTACTATGCTTCAACTTGT+GGG | + | chr6_1:94524257-94524276 | Msa0899440:intron | 30.0% | |
| GAAAAAATCATCATCTTCCT+CGG | - | chr6_1:94524369-94524388 | None:intergenic | 30.0% | |
| AAGATATCTAGGCCAATTAT+TGG | + | chr6_1:94524582-94524601 | Msa0899440:CDS | 30.0% | |
| TTCATGAAAAAACTTGCCTT+GGG | - | chr6_1:94522444-94522463 | None:intergenic | 30.0% | |
| TTTCATGAAAAAACTTGCCT+TGG | - | chr6_1:94522445-94522464 | None:intergenic | 30.0% | |
| TAAATTTAAAGAACTTGCCG+CGG | - | chr6_1:94522661-94522680 | None:intergenic | 30.0% | |
| AGATGAAAAAGCTACATCTA+AGG | + | chr6_1:94522870-94522889 | Msa0899440:CDS | 30.0% | |
| TTAGATGTACCTTCTTCATT+TGG | - | chr6_1:94522907-94522926 | None:intergenic | 30.0% | |
| ! | AAATGAAGAAGGTACATCTA+AGG | + | chr6_1:94522906-94522925 | Msa0899440:CDS | 30.0% |
| ! | TTTATTTGAACTTCGGCTTT+TGG | - | chr6_1:94522970-94522989 | None:intergenic | 30.0% |
| AAAAGCCGAAGTTCAAATAA+AGG | + | chr6_1:94522969-94522988 | Msa0899440:intron | 30.0% | |
| GTTCAAATAAAGGATGTTGA+AGG | + | chr6_1:94522979-94522998 | Msa0899440:intron | 30.0% | |
| TATTATAAATTGCGTGGTTC+GGG | + | chr6_1:94523226-94523245 | Msa0899440:intron | 30.0% | |
| ! | AAACTCACAGTATGTGTTTT+TGG | - | chr6_1:94523438-94523457 | None:intergenic | 30.0% |
| AATAACGAGGTTTCAAAAAG+TGG | + | chr6_1:94523610-94523629 | Msa0899440:intron | 30.0% | |
| ! | GTGCTCTAGATATAAATATC+AGG | + | chr6_1:94523662-94523681 | Msa0899440:intron | 30.0% |
| TGATTCATTCATGTTATCAC+AGG | - | chr6_1:94523795-94523814 | None:intergenic | 30.0% | |
| AACATGAATGAATCAGAGAT+AGG | + | chr6_1:94523800-94523819 | Msa0899440:CDS | 30.0% | |
| ACATGAATGAATCAGAGATA+GGG | + | chr6_1:94523801-94523820 | Msa0899440:CDS | 30.0% | |
| TACTTTGAGCTATTAGTTCA+AGG | + | chr6_1:94524146-94524165 | Msa0899440:intron | 30.0% | |
| ! | TCATGCTTTTATATCCAAGT+TGG | + | chr6_1:94524222-94524241 | Msa0899440:intron | 30.0% |
| ! | CATGCTTTTATATCCAAGTT+GGG | + | chr6_1:94524223-94524242 | Msa0899440:intron | 30.0% |
| ATTTACTATGCTTCAACTTG+TGG | + | chr6_1:94524256-94524275 | Msa0899440:intron | 30.0% | |
| TTTACTATGCTTCAACTTGT+GGG | + | chr6_1:94524257-94524276 | Msa0899440:intron | 30.0% | |
| GAAAAAATCATCATCTTCCT+CGG | - | chr6_1:94524369-94524388 | None:intergenic | 30.0% | |
| AAGATATCTAGGCCAATTAT+TGG | + | chr6_1:94524582-94524601 | Msa0899440:CDS | 30.0% | |
| AAATTTAAAGAACTTGCCGC+GGG | - | chr6_1:94522660-94522679 | None:intergenic | 35.0% | |
| !! | CTGCTTTTCAATTTCATCGA+GGG | - | chr6_1:94522782-94522801 | None:intergenic | 35.0% |
| !! | TCTGCTTTTCAATTTCATCG+AGG | - | chr6_1:94522783-94522802 | None:intergenic | 35.0% |
| ! | GAGATTGATGGCTATAATTC+TGG | - | chr6_1:94523203-94523222 | None:intergenic | 35.0% |
| ATTATAAATTGCGTGGTTCG+GGG | + | chr6_1:94523227-94523246 | Msa0899440:intron | 35.0% | |
| TCAATTTCAATTCTCGGTCA+TGG | + | chr6_1:94523370-94523389 | Msa0899440:intron | 35.0% | |
| CTTGAACACTCAATTCTAAG+GGG | - | chr6_1:94523528-94523547 | None:intergenic | 35.0% | |
| CCTTGAACACTCAATTCTAA+GGG | - | chr6_1:94523529-94523548 | None:intergenic | 35.0% | |
| CCTTAGAATTGAGTGTTCAA+GGG | + | chr6_1:94523527-94523546 | Msa0899440:intron | 35.0% | |
| CTTAGAATTGAGTGTTCAAG+GGG | + | chr6_1:94523528-94523547 | Msa0899440:intron | 35.0% | |
| TGATGTTGTGTCAAATAACG+AGG | + | chr6_1:94523597-94523616 | Msa0899440:intron | 35.0% | |
| ! | TATCAGGACGATTTTACTCA+AGG | + | chr6_1:94523678-94523697 | Msa0899440:intron | 35.0% |
| ! | ATCAGGACGATTTTACTCAA+GGG | + | chr6_1:94523679-94523698 | Msa0899440:intron | 35.0% |
| AAAGATCTTGGTTGCAAGTT+AGG | + | chr6_1:94523767-94523786 | Msa0899440:CDS | 35.0% | |
| CATGAATGAATCAGAGATAG+GGG | + | chr6_1:94523802-94523821 | Msa0899440:CDS | 35.0% | |
| TTAAATCTATGACCATCTGC+AGG | - | chr6_1:94523950-94523969 | None:intergenic | 35.0% | |
| AATGTTTAACATGCCCAACT+TGG | - | chr6_1:94524239-94524258 | None:intergenic | 35.0% | |
| ! | AACACAGTTTTACAATACCG+AGG | + | chr6_1:94524349-94524368 | Msa0899440:intron | 35.0% |
| ! | GTCTGTTACTGCATTCTTTT+AGG | - | chr6_1:94524421-94524440 | None:intergenic | 35.0% |
| ! | AATGCAGTAACAGACTAGTT+GGG | + | chr6_1:94524426-94524445 | Msa0899440:intron | 35.0% |
| TAGTTGGGAAATTCCTATCT+GGG | + | chr6_1:94524441-94524460 | Msa0899440:intron | 35.0% | |
| ACAGTCATTTGTGGAAGATT+GGG | - | chr6_1:94524558-94524577 | None:intergenic | 35.0% | |
| ATCTTCTTGACAGTCATTTG+TGG | - | chr6_1:94524567-94524586 | None:intergenic | 35.0% | |
| TGACTGTCAAGAAGATATCT+AGG | + | chr6_1:94524571-94524590 | Msa0899440:CDS | 35.0% | |
| ! | GATCTCTTTTTGCCAGTATA+TGG | - | chr6_1:94524624-94524643 | None:intergenic | 35.0% |
| ATACTGGCAAAAAGAGATCT+AGG | + | chr6_1:94524625-94524644 | Msa0899440:CDS | 35.0% | |
| AATTACGTTGACATAACTGC+CGG | - | chr6_1:94524658-94524677 | None:intergenic | 35.0% | |
| AAATTTAAAGAACTTGCCGC+GGG | - | chr6_1:94522660-94522679 | None:intergenic | 35.0% | |
| !! | CTGCTTTTCAATTTCATCGA+GGG | - | chr6_1:94522782-94522801 | None:intergenic | 35.0% |
| !! | TCTGCTTTTCAATTTCATCG+AGG | - | chr6_1:94522783-94522802 | None:intergenic | 35.0% |
| ! | GAGATTGATGGCTATAATTC+TGG | - | chr6_1:94523203-94523222 | None:intergenic | 35.0% |
| ATTATAAATTGCGTGGTTCG+GGG | + | chr6_1:94523227-94523246 | Msa0899440:intron | 35.0% | |
| TCAATTTCAATTCTCGGTCA+TGG | + | chr6_1:94523370-94523389 | Msa0899440:intron | 35.0% | |
| CTTGAACACTCAATTCTAAG+GGG | - | chr6_1:94523528-94523547 | None:intergenic | 35.0% | |
| CCTTGAACACTCAATTCTAA+GGG | - | chr6_1:94523529-94523548 | None:intergenic | 35.0% | |
| CCTTAGAATTGAGTGTTCAA+GGG | + | chr6_1:94523527-94523546 | Msa0899440:intron | 35.0% | |
| CTTAGAATTGAGTGTTCAAG+GGG | + | chr6_1:94523528-94523547 | Msa0899440:intron | 35.0% | |
| TGATGTTGTGTCAAATAACG+AGG | + | chr6_1:94523597-94523616 | Msa0899440:intron | 35.0% | |
| ! | TATCAGGACGATTTTACTCA+AGG | + | chr6_1:94523678-94523697 | Msa0899440:intron | 35.0% |
| ! | ATCAGGACGATTTTACTCAA+GGG | + | chr6_1:94523679-94523698 | Msa0899440:intron | 35.0% |
| AAAGATCTTGGTTGCAAGTT+AGG | + | chr6_1:94523767-94523786 | Msa0899440:CDS | 35.0% | |
| CATGAATGAATCAGAGATAG+GGG | + | chr6_1:94523802-94523821 | Msa0899440:CDS | 35.0% | |
| TTAAATCTATGACCATCTGC+AGG | - | chr6_1:94523950-94523969 | None:intergenic | 35.0% | |
| AATGTTTAACATGCCCAACT+TGG | - | chr6_1:94524239-94524258 | None:intergenic | 35.0% | |
| ! | AACACAGTTTTACAATACCG+AGG | + | chr6_1:94524349-94524368 | Msa0899440:intron | 35.0% |
| ! | GTCTGTTACTGCATTCTTTT+AGG | - | chr6_1:94524421-94524440 | None:intergenic | 35.0% |
| ! | AATGCAGTAACAGACTAGTT+GGG | + | chr6_1:94524426-94524445 | Msa0899440:intron | 35.0% |
| TAGTTGGGAAATTCCTATCT+GGG | + | chr6_1:94524441-94524460 | Msa0899440:intron | 35.0% | |
| ACAGTCATTTGTGGAAGATT+GGG | - | chr6_1:94524558-94524577 | None:intergenic | 35.0% | |
| ATCTTCTTGACAGTCATTTG+TGG | - | chr6_1:94524567-94524586 | None:intergenic | 35.0% | |
| TGACTGTCAAGAAGATATCT+AGG | + | chr6_1:94524571-94524590 | Msa0899440:CDS | 35.0% | |
| ! | GATCTCTTTTTGCCAGTATA+TGG | - | chr6_1:94524624-94524643 | None:intergenic | 35.0% |
| ATACTGGCAAAAAGAGATCT+AGG | + | chr6_1:94524625-94524644 | Msa0899440:CDS | 35.0% | |
| AATTACGTTGACATAACTGC+CGG | - | chr6_1:94524658-94524677 | None:intergenic | 35.0% | |
| TGTAAGGCTTCAATTTCTGC+TGG | - | chr6_1:94522578-94522597 | None:intergenic | 40.0% | |
| TTAACCTCTAAACCAGCAGT+TGG | + | chr6_1:94522732-94522751 | Msa0899440:intron | 40.0% | |
| GCTGAAGTTCCAAATGAAGA+AGG | + | chr6_1:94522895-94522914 | Msa0899440:CDS | 40.0% | |
| GATTTCTTTCATTCTCCTGC+TGG | - | chr6_1:94522948-94522967 | None:intergenic | 40.0% | |
| GCAGTTGTGTAGAGTAAGAA+AGG | + | chr6_1:94523018-94523037 | Msa0899440:intron | 40.0% | |
| TGTCTGACACTCACAACTTA+AGG | - | chr6_1:94523069-94523088 | None:intergenic | 40.0% | |
| ATAGACAAGATTTGCGAGCT+TGG | - | chr6_1:94523103-94523122 | None:intergenic | 40.0% | |
| AAATCTTGTCTATGCGTGTC+TGG | + | chr6_1:94523110-94523129 | Msa0899440:intron | 40.0% | |
| ! | TTATAAATTGCGTGGTTCGG+GGG | + | chr6_1:94523228-94523247 | Msa0899440:intron | 40.0% |
| CCCTTAGAATTGAGTGTTCA+AGG | + | chr6_1:94523526-94523545 | Msa0899440:intron | 40.0% | |
| CCCTTGAACACTCAATTCTA+AGG | - | chr6_1:94523530-94523549 | None:intergenic | 40.0% | |
| !!! | AGTGGTGTTTGTGCTGTTTT+AGG | + | chr6_1:94523628-94523647 | Msa0899440:intron | 40.0% |
| ATGTGCAAGTGCAAAGATCT+TGG | + | chr6_1:94523755-94523774 | Msa0899440:CDS | 40.0% | |
| GATAGGGGAATTTGACATGA+AGG | + | chr6_1:94523817-94523836 | Msa0899440:CDS | 40.0% | |
| ! | GAATTTGACATGAAGGTGTG+TGG | + | chr6_1:94523824-94523843 | Msa0899440:intron | 40.0% |
| GAATGCAGTAACAGACTAGT+TGG | + | chr6_1:94524425-94524444 | Msa0899440:intron | 40.0% | |
| CTAGTTGGGAAATTCCTATC+TGG | + | chr6_1:94524440-94524459 | Msa0899440:intron | 40.0% | |
| GACAGTCATTTGTGGAAGAT+TGG | - | chr6_1:94524559-94524578 | None:intergenic | 40.0% | |
| ! | CTCTTTTTGCCAGTATATGG+TGG | - | chr6_1:94524621-94524640 | None:intergenic | 40.0% |
| AAGAGATCTAGGCCAAAATC+CGG | + | chr6_1:94524636-94524655 | Msa0899440:CDS | 40.0% | |
| ! | TTGACATAACTGCCGGATTT+TGG | - | chr6_1:94524651-94524670 | None:intergenic | 40.0% |
| ! | CGTAATTTCTGAAGAACACC+AGG | + | chr6_1:94524671-94524690 | Msa0899440:CDS | 40.0% |
| TGTAAGGCTTCAATTTCTGC+TGG | - | chr6_1:94522578-94522597 | None:intergenic | 40.0% | |
| TTAACCTCTAAACCAGCAGT+TGG | + | chr6_1:94522732-94522751 | Msa0899440:intron | 40.0% | |
| GCTGAAGTTCCAAATGAAGA+AGG | + | chr6_1:94522895-94522914 | Msa0899440:CDS | 40.0% | |
| GATTTCTTTCATTCTCCTGC+TGG | - | chr6_1:94522948-94522967 | None:intergenic | 40.0% | |
| GCAGTTGTGTAGAGTAAGAA+AGG | + | chr6_1:94523018-94523037 | Msa0899440:intron | 40.0% | |
| TGTCTGACACTCACAACTTA+AGG | - | chr6_1:94523069-94523088 | None:intergenic | 40.0% | |
| ATAGACAAGATTTGCGAGCT+TGG | - | chr6_1:94523103-94523122 | None:intergenic | 40.0% | |
| AAATCTTGTCTATGCGTGTC+TGG | + | chr6_1:94523110-94523129 | Msa0899440:intron | 40.0% | |
| ! | TTATAAATTGCGTGGTTCGG+GGG | + | chr6_1:94523228-94523247 | Msa0899440:intron | 40.0% |
| CCCTTAGAATTGAGTGTTCA+AGG | + | chr6_1:94523526-94523545 | Msa0899440:intron | 40.0% | |
| CCCTTGAACACTCAATTCTA+AGG | - | chr6_1:94523530-94523549 | None:intergenic | 40.0% | |
| !!! | AGTGGTGTTTGTGCTGTTTT+AGG | + | chr6_1:94523628-94523647 | Msa0899440:intron | 40.0% |
| ATGTGCAAGTGCAAAGATCT+TGG | + | chr6_1:94523755-94523774 | Msa0899440:CDS | 40.0% | |
| GATAGGGGAATTTGACATGA+AGG | + | chr6_1:94523817-94523836 | Msa0899440:CDS | 40.0% | |
| ! | GAATTTGACATGAAGGTGTG+TGG | + | chr6_1:94523824-94523843 | Msa0899440:intron | 40.0% |
| GAATGCAGTAACAGACTAGT+TGG | + | chr6_1:94524425-94524444 | Msa0899440:intron | 40.0% | |
| CTAGTTGGGAAATTCCTATC+TGG | + | chr6_1:94524440-94524459 | Msa0899440:intron | 40.0% | |
| GACAGTCATTTGTGGAAGAT+TGG | - | chr6_1:94524559-94524578 | None:intergenic | 40.0% | |
| ! | CTCTTTTTGCCAGTATATGG+TGG | - | chr6_1:94524621-94524640 | None:intergenic | 40.0% |
| AAGAGATCTAGGCCAAAATC+CGG | + | chr6_1:94524636-94524655 | Msa0899440:CDS | 40.0% | |
| ! | TTGACATAACTGCCGGATTT+TGG | - | chr6_1:94524651-94524670 | None:intergenic | 40.0% |
| ! | CGTAATTTCTGAAGAACACC+AGG | + | chr6_1:94524671-94524690 | Msa0899440:CDS | 40.0% |
| CAATCACACTGCAAACAGGA+GGG | - | chr6_1:94522404-94522423 | None:intergenic | 45.0% | |
| TCAATCACACTGCAAACAGG+AGG | - | chr6_1:94522405-94522424 | None:intergenic | 45.0% | |
| TCGTCAATCACACTGCAAAC+AGG | - | chr6_1:94522408-94522427 | None:intergenic | 45.0% | |
| TGTGTCTGATTTACAACCCG+CGG | + | chr6_1:94522641-94522660 | Msa0899440:intron | 45.0% | |
| !! | AACTCCAACTGCTGGTTTAG+AGG | - | chr6_1:94522739-94522758 | None:intergenic | 45.0% |
| CATACAACAACTCCAACTGC+TGG | - | chr6_1:94522747-94522766 | None:intergenic | 45.0% | |
| ! | CTTTCATTCTCCTGCTGGTT+TGG | - | chr6_1:94522943-94522962 | None:intergenic | 45.0% |
| AGTTGTGAGTGTCAGACACT+TGG | + | chr6_1:94523071-94523090 | Msa0899440:intron | 45.0% | |
| GTTGTGAGTGTCAGACACTT+GGG | + | chr6_1:94523072-94523091 | Msa0899440:intron | 45.0% | |
| ! | TATAAATTGCGTGGTTCGGG+GGG | + | chr6_1:94523229-94523248 | Msa0899440:intron | 45.0% |
| !! | GGTCATGGCTTGCTAATTCT+TGG | + | chr6_1:94523385-94523404 | Msa0899440:intron | 45.0% |
| !! | GCTGTTTTAGGCACTGCAAT+TGG | + | chr6_1:94523640-94523659 | Msa0899440:intron | 45.0% |
| ! | AGGACGATTTTACTCAAGGG+TGG | + | chr6_1:94523682-94523701 | Msa0899440:intron | 45.0% |
| CTGCAGGAGGTGAAAATCAT+AGG | - | chr6_1:94523934-94523953 | None:intergenic | 45.0% | |
| ! | TGATTTTCACCTCCTGCAGA+TGG | + | chr6_1:94523935-94523954 | Msa0899440:intron | 45.0% |
| AATCTATGACCATCTGCAGG+AGG | - | chr6_1:94523947-94523966 | None:intergenic | 45.0% | |
| GGGTTGCTCAATGTCTGATT+GGG | - | chr6_1:94524188-94524207 | None:intergenic | 45.0% | |
| TGGGTTGCTCAATGTCTGAT+TGG | - | chr6_1:94524189-94524208 | None:intergenic | 45.0% | |
| TTCCTATCTGGGTGCAGATT+TGG | + | chr6_1:94524452-94524471 | Msa0899440:intron | 45.0% | |
| TCCTATCTGGGTGCAGATTT+GGG | + | chr6_1:94524453-94524472 | Msa0899440:intron | 45.0% | |
| CTTGCGACGTAGCCAATAAT+TGG | - | chr6_1:94524597-94524616 | None:intergenic | 45.0% | |
| CAATCACACTGCAAACAGGA+GGG | - | chr6_1:94522404-94522423 | None:intergenic | 45.0% | |
| TCAATCACACTGCAAACAGG+AGG | - | chr6_1:94522405-94522424 | None:intergenic | 45.0% | |
| TCGTCAATCACACTGCAAAC+AGG | - | chr6_1:94522408-94522427 | None:intergenic | 45.0% | |
| TGTGTCTGATTTACAACCCG+CGG | + | chr6_1:94522641-94522660 | Msa0899440:intron | 45.0% | |
| !! | AACTCCAACTGCTGGTTTAG+AGG | - | chr6_1:94522739-94522758 | None:intergenic | 45.0% |
| CATACAACAACTCCAACTGC+TGG | - | chr6_1:94522747-94522766 | None:intergenic | 45.0% | |
| ! | CTTTCATTCTCCTGCTGGTT+TGG | - | chr6_1:94522943-94522962 | None:intergenic | 45.0% |
| AGTTGTGAGTGTCAGACACT+TGG | + | chr6_1:94523071-94523090 | Msa0899440:intron | 45.0% | |
| GTTGTGAGTGTCAGACACTT+GGG | + | chr6_1:94523072-94523091 | Msa0899440:intron | 45.0% | |
| ! | TATAAATTGCGTGGTTCGGG+GGG | + | chr6_1:94523229-94523248 | Msa0899440:intron | 45.0% |
| !! | GGTCATGGCTTGCTAATTCT+TGG | + | chr6_1:94523385-94523404 | Msa0899440:intron | 45.0% |
| !! | GCTGTTTTAGGCACTGCAAT+TGG | + | chr6_1:94523640-94523659 | Msa0899440:intron | 45.0% |
| ! | AGGACGATTTTACTCAAGGG+TGG | + | chr6_1:94523682-94523701 | Msa0899440:intron | 45.0% |
| CTGCAGGAGGTGAAAATCAT+AGG | - | chr6_1:94523934-94523953 | None:intergenic | 45.0% | |
| ! | TGATTTTCACCTCCTGCAGA+TGG | + | chr6_1:94523935-94523954 | Msa0899440:intron | 45.0% |
| AATCTATGACCATCTGCAGG+AGG | - | chr6_1:94523947-94523966 | None:intergenic | 45.0% | |
| GGGTTGCTCAATGTCTGATT+GGG | - | chr6_1:94524188-94524207 | None:intergenic | 45.0% | |
| TGGGTTGCTCAATGTCTGAT+TGG | - | chr6_1:94524189-94524208 | None:intergenic | 45.0% | |
| TTCCTATCTGGGTGCAGATT+TGG | + | chr6_1:94524452-94524471 | Msa0899440:intron | 45.0% | |
| TCCTATCTGGGTGCAGATTT+GGG | + | chr6_1:94524453-94524472 | Msa0899440:intron | 45.0% | |
| CTTGCGACGTAGCCAATAAT+TGG | - | chr6_1:94524597-94524616 | None:intergenic | 45.0% | |
| CGAACTTTCTGCAGAACCCA+AGG | + | chr6_1:94522425-94522444 | Msa0899440:CDS | 50.0% | |
| TGGAGTTGTTGTATGCAGCG+CGG | + | chr6_1:94522752-94522771 | Msa0899440:intron | 50.0% | |
| AGCTGTAGTTCCAAACCAGC+AGG | + | chr6_1:94522930-94522949 | Msa0899440:CDS | 50.0% | |
| CCTATCTGGGTGCAGATTTG+GGG | + | chr6_1:94524454-94524473 | Msa0899440:intron | 50.0% | |
| GTCGCAAGACCACCATATAC+TGG | + | chr6_1:94524609-94524628 | Msa0899440:CDS | 50.0% | |
| CGAACTTTCTGCAGAACCCA+AGG | + | chr6_1:94522425-94522444 | Msa0899440:CDS | 50.0% | |
| TGGAGTTGTTGTATGCAGCG+CGG | + | chr6_1:94522752-94522771 | Msa0899440:intron | 50.0% | |
| AGCTGTAGTTCCAAACCAGC+AGG | + | chr6_1:94522930-94522949 | Msa0899440:CDS | 50.0% | |
| CCTATCTGGGTGCAGATTTG+GGG | + | chr6_1:94524454-94524473 | Msa0899440:intron | 50.0% | |
| GTCGCAAGACCACCATATAC+TGG | + | chr6_1:94524609-94524628 | Msa0899440:CDS | 50.0% | |
| CACTGCAAACAGGAGGGAAG+CGG | - | chr6_1:94522398-94522417 | None:intergenic | 55.0% | |
| CCCCAAATCTGCACCCAGAT+AGG | - | chr6_1:94524457-94524476 | None:intergenic | 55.0% | |
| GGAGAGAGACTCAACTGCAG+GGG | - | chr6_1:94524537-94524556 | None:intergenic | 55.0% | |
| GGGAGAGAGACTCAACTGCA+GGG | - | chr6_1:94524538-94524557 | None:intergenic | 55.0% | |
| TGGGAGAGAGACTCAACTGC+AGG | - | chr6_1:94524539-94524558 | None:intergenic | 55.0% | |
| CACTGCAAACAGGAGGGAAG+CGG | - | chr6_1:94522398-94522417 | None:intergenic | 55.0% | |
| CCCCAAATCTGCACCCAGAT+AGG | - | chr6_1:94524457-94524476 | None:intergenic | 55.0% | |
| GGAGAGAGACTCAACTGCAG+GGG | - | chr6_1:94524537-94524556 | None:intergenic | 55.0% | |
| GGGAGAGAGACTCAACTGCA+GGG | - | chr6_1:94524538-94524557 | None:intergenic | 55.0% | |
| TGGGAGAGAGACTCAACTGC+AGG | - | chr6_1:94524539-94524558 | None:intergenic | 55.0% | |
| AAGCGGTTGAAGCCAGGTGG+AGG | - | chr6_1:94522381-94522400 | None:intergenic | 60.0% | |
| AAGCGGTTGAAGCCAGGTGG+AGG | - | chr6_1:94522381-94522400 | None:intergenic | 60.0% | |
| GGGAAGCGGTTGAAGCCAGG+TGG | - | chr6_1:94522384-94522403 | None:intergenic | 65.0% | |
| GGAGGGAAGCGGTTGAAGCC+AGG | - | chr6_1:94522387-94522406 | None:intergenic | 65.0% | |
| GGGAAGCGGTTGAAGCCAGG+TGG | - | chr6_1:94522384-94522403 | None:intergenic | 65.0% | |
| GGAGGGAAGCGGTTGAAGCC+AGG | - | chr6_1:94522387-94522406 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 94522375 | 94524698 | 94522375 | ID=Msa0899440;Name=Msa0899440 |
| chr6_1 | mRNA | 94522375 | 94524698 | 94522375 | ID=Msa0899440-mRNA-1;Parent=Msa0899440;Name=Msa0899440-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0|0.5|1|1|4|0|176 |
| chr6_1 | exon | 94522375 | 94522450 | 94522375 | ID=Msa0899440-mRNA-1:exon:16141;Parent=Msa0899440-mRNA-1 |
| chr6_1 | exon | 94522770 | 94522978 | 94522770 | ID=Msa0899440-mRNA-1:exon:16142;Parent=Msa0899440-mRNA-1 |
| chr6_1 | exon | 94523749 | 94523838 | 94523749 | ID=Msa0899440-mRNA-1:exon:16143;Parent=Msa0899440-mRNA-1 |
| chr6_1 | exon | 94524543 | 94524698 | 94524543 | ID=Msa0899440-mRNA-1:exon:16144;Parent=Msa0899440-mRNA-1 |
| chr6_1 | CDS | 94522375 | 94522450 | 94522375 | ID=Msa0899440-mRNA-1:cds;Parent=Msa0899440-mRNA-1 |
| chr6_1 | CDS | 94522770 | 94522978 | 94522770 | ID=Msa0899440-mRNA-1:cds;Parent=Msa0899440-mRNA-1 |
| chr6_1 | CDS | 94523749 | 94523838 | 94523749 | ID=Msa0899440-mRNA-1:cds;Parent=Msa0899440-mRNA-1 |
| chr6_1 | CDS | 94524543 | 94524698 | 94524543 | ID=Msa0899440-mRNA-1:cds;Parent=Msa0899440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
