AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0964900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0964900 MtrunA17_Chr6g0485511 58.824 102 40 2 69 170 14 113 2.26e-25 99.0
Msa0964900 MtrunA17_Chr6g0485551 63.441 186 20 2 170 337 41 196 3.89e-25 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 48 sgRNAs with CRISPR-Local

Find 421 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTTGGCGTTGCTACTTT+CGG 0.312696 6_3:-92053016 Msa0964900:intron
AAGCTGAAATTCTGGAAATA+AGG 0.320988 6_3:-92046545 Msa0964900:CDS
TTAGATGTACCTTCTTCATT+TGG 0.332645 6_3:+92051038 None:intergenic
TCAGCCTTCGAAGTTCTTTA+CGG 0.344809 6_3:+92046589 None:intergenic
TCAGCCTTCGAAGTTCTTTA+CGG 0.344809 6_3:+92051844 None:intergenic
CTAAACAACTGCTGGTTTAG+AGG 0.345330 6_3:+92046666 None:intergenic
TTCAATCACTTCATCATAAT+AGG 0.366272 6_3:+92046827 None:intergenic
TTCAATCACTTCATCATAAT+AGG 0.366272 6_3:+92052089 None:intergenic
GTCAGTCATTTGTGGAAGAT+TGG 0.376252 6_3:+92052343 None:intergenic
TCAGTCATTTGTGGAAGATT+GGG 0.381276 6_3:+92052344 None:intergenic
CTTCGTTATGAATCGACCTT+TGG 0.390002 6_3:+92053078 None:intergenic
AAATGAAGAAGGTACATCTA+AGG 0.414920 6_3:-92051036 Msa0964900:CDS
AGGCTGAAAACTGCGTGGTT+TGG 0.421494 6_3:-92046645 Msa0964900:CDS
TTCTCCTCGTCAGTCATTTG+TGG 0.435006 6_3:+92052335 None:intergenic
GGAAGCTGAAAGGAAGGAAA+AGG 0.444058 6_3:-92046481 Msa0964900:CDS
AGAGGAGGAAGCTGAAAGGA+AGG 0.454150 6_3:-92046487 Msa0964900:CDS
CTCTAAACCAGCAGTTGTTT+AGG 0.457152 6_3:-92046665 Msa0964900:CDS
TCGTGATTTAAATCAGCATC+AGG 0.464071 6_3:+92046780 None:intergenic
AGAAATCTAAGCCAACTACT+TGG 0.472779 6_3:-92052316 Msa0964900:CDS
AGGAGGAAGCTGAAATGAAA+AGG 0.473270 6_3:-92046515 Msa0964900:CDS
ATGCTGAAAACTGCGTGGTT+TGG 0.474624 6_3:-92051900 Msa0964900:CDS
GGAAGCTGAAATGAAAAGGA+AGG 0.493440 6_3:-92046511 Msa0964900:CDS
TCTGGAAATAAGGAAGGAAA+AGG 0.493692 6_3:-92046535 Msa0964900:CDS
AGCTGAAAGGAAGGAAAAGG+AGG 0.497172 6_3:-92046478 Msa0964900:CDS
GTATGCAGCGCGGACTGCCC+TGG 0.503284 6_3:-92051180 Msa0964900:intron
GGTCGATTCATAACGAAGAA+AGG 0.511866 6_3:-92053073 Msa0964900:CDS
AGGAAGAGGAGGAAGCTGAA+AGG 0.516462 6_3:-92046491 Msa0964900:CDS
GAAATCTAAGCCAACTACTT+GGG 0.528517 6_3:-92052315 Msa0964900:intron
TGAAATGAAAAGGAAGGAAG+AGG 0.532757 6_3:-92046505 Msa0964900:CDS
CCTGAGATGACCCAAGTAGT+TGG 0.545425 6_3:+92052305 None:intergenic
GGAAATAAGGAAGGAAAAGG+AGG 0.550433 6_3:-92046532 Msa0964900:CDS
CAGTCATTTGTGGAAGATTG+GGG 0.559329 6_3:+92052345 None:intergenic
TGAAATTCTGGAAATAAGGA+AGG 0.567609 6_3:-92046541 Msa0964900:CDS
AAAACTGCGTGGTTTGGCAA+AGG 0.574300 6_3:-92046639 Msa0964900:CDS
GAAAACTGCGTGGTTTGGCA+AGG 0.583493 6_3:-92051895 Msa0964900:CDS
GGAAGAGAGTTAAGCTGCAG+AGG 0.584660 6_3:+92052366 None:intergenic
GCTGAAGTTCCAAATGAAGA+AGG 0.589203 6_3:-92051047 Msa0964900:CDS
AATGAAAAGGAAGGAAGAGG+AGG 0.596938 6_3:-92046502 Msa0964900:CDS
AAAACTGCGTGGTTTGGCAA+GGG 0.599527 6_3:-92051894 Msa0964900:CDS
CAAAGTAAAACTGAGTTGCA+AGG 0.623064 6_3:+92053032 None:intergenic
GCAAGGCGTATTACTATCTG+AGG 0.635089 6_3:+92053049 None:intergenic
ATTAAATTAAGGATGTCCAA+AGG 0.657895 6_3:-92053094 None:intergenic
AAAACCGTAAAGAACTTCGA+AGG 0.658384 6_3:-92046593 Msa0964900:CDS
AAAACCGTAAAGAACTTCGA+AGG 0.659678 6_3:-92051848 Msa0964900:CDS
TGATGCTGATTTAAATCACG+AGG 0.690474 6_3:-92046778 Msa0964900:CDS
TATTTATGCTGAAAACTGCG+TGG 0.707815 6_3:-92051905 Msa0964900:CDS
TCTTCCACAAATGACTGACG+AGG 0.715715 6_3:-92052339 Msa0964900:CDS
TGTTTAGGCTGAAAACTGCG+TGG 0.725223 6_3:-92046650 Msa0964900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAGTATAAACTATTAAA+AGG + chr6_3:92046677-92046696 None:intergenic 10.0%
!! TTTATAATATAAGAAATTGA+TGG + chr6_3:92048711-92048730 None:intergenic 10.0%
!! TAAAAATAACTAAAATCTAA+TGG - chr6_3:92050683-92050702 Msa0964900:intron 10.0%
!!! AATTATTTTAGAAACTTTAA+AGG - chr6_3:92051457-92051476 Msa0964900:intron 10.0%
!!! ATTAAATCTAAAACTAATTA+TGG - chr6_3:92051602-92051621 Msa0964900:intron 10.0%
!! GTATAGAAAATAATATTAAA+GGG + chr6_3:92052560-92052579 None:intergenic 10.0%
!! TTATTAAAGAACTCAAAATA+TGG + chr6_3:92048022-92048041 None:intergenic 15.0%
!! TTCTTATATTATAAATTGTG+TGG - chr6_3:92048716-92048735 Msa0964900:intron 15.0%
!! ATATATTGAATGATCATTAT+TGG - chr6_3:92048953-92048972 Msa0964900:intron 15.0%
!! AAAAAGAAGATAAATGTTAT+GGG + chr6_3:92049007-92049026 None:intergenic 15.0%
!! AAAAAAGAAGATAAATGTTA+TGG + chr6_3:92049008-92049027 None:intergenic 15.0%
!! AAATAAATAAACAACATGAA+AGG + chr6_3:92049605-92049624 None:intergenic 15.0%
!! TTTAGAAAAAAAATCAAAGA+GGG + chr6_3:92051271-92051290 None:intergenic 15.0%
!! ATTTAGAAAAAAAATCAAAG+AGG + chr6_3:92051272-92051291 None:intergenic 15.0%
!! AAGTATTCTAAATCAAAATA+TGG - chr6_3:92051431-92051450 Msa0964900:intron 15.0%
!! AATGAAGAATAAATAACTTA+CGG - chr6_3:92051959-92051978 Msa0964900:intron 15.0%
!!! ATTTTTTAATATAAGTTTGC+CGG + chr6_3:92052454-92052473 None:intergenic 15.0%
!! GGTATAGAAAATAATATTAA+AGG + chr6_3:92052561-92052580 None:intergenic 15.0%
!! GAAAAAGCAAATTAAAAAAA+AGG - chr6_3:92052858-92052877 Msa0964900:intron 15.0%
!! AAGTATAAACTATTAAAAGG+AGG + chr6_3:92046674-92046693 None:intergenic 20.0%
!! TATAATATATTCTTAGTGCA+TGG - chr6_3:92046720-92046739 Msa0964900:intron 20.0%
!! ATAATATTAAAGGGCTAAAA+CGG + chr6_3:92047285-92047304 None:intergenic 20.0%
!! AAAGCAAATTAAAAAACATG+AGG - chr6_3:92047606-92047625 Msa0964900:intron 20.0%
!! TGAAATGTTAACTAAGTTTA+TGG - chr6_3:92047948-92047967 Msa0964900:intron 20.0%
!! GAAATGTTAACTAAGTTTAT+GGG - chr6_3:92047949-92047968 Msa0964900:intron 20.0%
!! AAATGTTAACTAAGTTTATG+GGG - chr6_3:92047950-92047969 Msa0964900:intron 20.0%
!!! ATATGAGCAATAGTAATTTT+AGG + chr6_3:92048078-92048097 None:intergenic 20.0%
!! ATACATTACGATAGTTATAT+AGG + chr6_3:92048648-92048667 None:intergenic 20.0%
!! GTAATGTATCTGTAATATTA+TGG - chr6_3:92048659-92048678 Msa0964900:intron 20.0%
!! ATATTATAAATTGTGTGGTT+CGG - chr6_3:92048721-92048740 Msa0964900:intron 20.0%
!! AGTGAAAAATGAAAATGTAA+AGG - chr6_3:92048767-92048786 Msa0964900:intron 20.0%
!! GTGAAAAATGAAAATGTAAA+GGG - chr6_3:92048768-92048787 Msa0964900:intron 20.0%
!! TGAAAAATGAAAATGTAAAG+GGG - chr6_3:92048769-92048788 Msa0964900:intron 20.0%
!! ATTCAAAATAATACGAAAAC+TGG + chr6_3:92048855-92048874 None:intergenic 20.0%
!!! TTTTGAATTATATAATCCGA+AGG - chr6_3:92048867-92048886 Msa0964900:intron 20.0%
!! TTTGAATTATATAATCCGAA+GGG - chr6_3:92048868-92048887 Msa0964900:intron 20.0%
!!! TCGTTATTTTGATTTTATCA+AGG - chr6_3:92049146-92049165 Msa0964900:intron 20.0%
!!! CGTTATTTTGATTTTATCAA+GGG - chr6_3:92049147-92049166 Msa0964900:intron 20.0%
!! AAAAGAAAATAGAGCAATTA+GGG + chr6_3:92049582-92049601 None:intergenic 20.0%
!! ATTACTTACATGAATTGAAA+AGG - chr6_3:92050208-92050227 Msa0964900:intron 20.0%
!! AATGAAATGTAGAAGATTAA+TGG - chr6_3:92050364-92050383 Msa0964900:intron 20.0%
!!! TGAGTCTTATTTTTGTATTA+TGG - chr6_3:92050745-92050764 Msa0964900:intron 20.0%
!! CTAATTCTTATCATACAAAA+TGG + chr6_3:92050801-92050820 None:intergenic 20.0%
!! ATATATATACAGTAAGAGAA+CGG + chr6_3:92051161-92051180 None:intergenic 20.0%
!!! ACTGAAAACAAAGATTTTAT+TGG - chr6_3:92052045-92052064 Msa0964900:intron 20.0%
!! TGATTATTCTTCTTCAATTT+AGG - chr6_3:92052241-92052260 Msa0964900:intron 20.0%
!! GATTATTCTTCTTCAATTTA+GGG - chr6_3:92052242-92052261 Msa0964900:intron 20.0%
!! ATAATATTAAAGGGCTAAAA+CGG + chr6_3:92047285-92047304 None:intergenic 20.0%
!! GAAAAAGAAAATGAAAAAGA+AGG - chr6_3:92053020-92053039 Msa0964900:CDS 20.0%
!! TTAAGTTATCTGTTTCTCAA+AGG - chr6_3:92046527-92046546 Msa0964900:CDS 25.0%
!! ATTTTGCAACATTCTTTAGT+AGG - chr6_3:92046627-92046646 Msa0964900:CDS 25.0%
!! TTTTGCAACATTCTTTAGTA+GGG - chr6_3:92046628-92046647 Msa0964900:CDS 25.0%
!! TTGAATCTATGATTGATTTC+TGG - chr6_3:92046936-92046955 Msa0964900:intron 25.0%
!! TGAATCTATGATTGATTTCT+GGG - chr6_3:92046937-92046956 Msa0964900:intron 25.0%
!! AATAATCTTGTCGGATTTTA+GGG - chr6_3:92046960-92046979 Msa0964900:intron 25.0%
!! CTTTTGCCATAATTATATGT+GGG + chr6_3:92047148-92047167 None:intergenic 25.0%
! TTCAATCACTTCATCATAAT+AGG + chr6_3:92047340-92047359 None:intergenic 25.0%
!!! AGAAAGAAGCTGATTTTAAA+AGG - chr6_3:92048284-92048303 Msa0964900:intron 25.0%
!!! GAAAGAAGCTGATTTTAAAA+GGG - chr6_3:92048285-92048304 Msa0964900:intron 25.0%
!! AACATCCTTTATTTGAACTT+CGG + chr6_3:92048473-92048492 None:intergenic 25.0%
! TGAAGGCTGTAAATAAAATT+AGG - chr6_3:92048492-92048511 Msa0964900:intron 25.0%
! AAATAATACGAAAACTGGTT+CGG + chr6_3:92048850-92048869 None:intergenic 25.0%
! AAGATCAATCATCAATGTAT+AGG - chr6_3:92049096-92049115 Msa0964900:intron 25.0%
! TAATGAGAGTTCTTAAAATC+GGG + chr6_3:92049216-92049235 None:intergenic 25.0%
! CTAATGAGAGTTCTTAAAAT+CGG + chr6_3:92049217-92049236 None:intergenic 25.0%
! ATAATGTAAAAGAGAGAGAA+AGG + chr6_3:92049244-92049263 None:intergenic 25.0%
!! TTTCTCTCTCTTTTACATTA+TGG - chr6_3:92049243-92049262 Msa0964900:intron 25.0%
! GATTTGACTAAGTATTCAAA+TGG + chr6_3:92049286-92049305 None:intergenic 25.0%
! GAAAAGAAAATAGAGCAATT+AGG + chr6_3:92049583-92049602 None:intergenic 25.0%
!! GACATGATTTATTGTTGATT+TGG - chr6_3:92049685-92049704 Msa0964900:intron 25.0%
! AAAGACTACCATAGAATAAA+TGG - chr6_3:92049820-92049839 Msa0964900:intron 25.0%
! AAGACTACCATAGAATAAAT+GGG - chr6_3:92049821-92049840 Msa0964900:intron 25.0%
! TAAAAAACAAGCAAAGAACT+TGG - chr6_3:92049892-92049911 Msa0964900:intron 25.0%
!!! TTTTGTTGTACTTATGCTAT+AGG - chr6_3:92049973-92049992 Msa0964900:intron 25.0%
!! ATAGGTTATTGATAATTGCA+TGG - chr6_3:92049991-92050010 Msa0964900:intron 25.0%
! AAAGTGTACTAAATAATCTG+TGG - chr6_3:92050080-92050099 Msa0964900:intron 25.0%
! GCATATAAATTATTTCCTGT+TGG + chr6_3:92050170-92050189 None:intergenic 25.0%
!!! ATTTTAGAGAAGCTACAAAT+TGG + chr6_3:92050528-92050547 None:intergenic 25.0%
! AGAGTACATTACATTCAATT+TGG - chr6_3:92050606-92050625 Msa0964900:intron 25.0%
! TTAGTTATTACTGTTGTTGA+AGG - chr6_3:92050817-92050836 Msa0964900:intron 25.0%
!! TGTTGATGAGAAACTAAAAT+CGG + chr6_3:92051335-92051354 None:intergenic 25.0%
!!! AGTGTAATTATTGTTGGTTT+TGG + chr6_3:92051404-92051423 None:intergenic 25.0%
! TGTTGTAGTGTAATTATTGT+TGG + chr6_3:92051410-92051429 None:intergenic 25.0%
!! AACTTTAAAGGTCATTTAAC+TGG - chr6_3:92051469-92051488 Msa0964900:intron 25.0%
! CTCGAAGAGAAATTAAATTA+AGG - chr6_3:92051508-92051527 Msa0964900:intron 25.0%
! AAGAATAAATAACTTACGGA+TGG - chr6_3:92051963-92051982 Msa0964900:intron 25.0%
!! CTTTTGCCATAATTATATGT+GGG + chr6_3:92047148-92047167 None:intergenic 25.0%
! TTCAATCACTTCATCATAAT+AGG + chr6_3:92047340-92047359 None:intergenic 25.0%
!! TGAAATTCTGAAAAAAAGCA+AGG - chr6_3:92052975-92052994 Msa0964900:intron 25.0%
TAAAATACAAGTCTTCACCA+GGG + chr6_3:92046505-92046524 None:intergenic 30.0%
TTAAAATACAAGTCTTCACC+AGG + chr6_3:92046506-92046525 None:intergenic 30.0%
GAGGTATATATAGTAAGAGT+GGG + chr6_3:92046764-92046783 None:intergenic 30.0%
! AGAGGTATATATAGTAAGAG+TGG + chr6_3:92046765-92046784 None:intergenic 30.0%
! ATTTCTGGGAATAATCTTGT+CGG - chr6_3:92046951-92046970 Msa0964900:intron 30.0%
! GAATAATCTTGTCGGATTTT+AGG - chr6_3:92046959-92046978 Msa0964900:intron 30.0%
! ATAATCTTGTCGGATTTTAG+GGG - chr6_3:92046961-92046980 Msa0964900:intron 30.0%
! CCTTTTGCCATAATTATATG+TGG + chr6_3:92047149-92047168 None:intergenic 30.0%
CCACATATAATTATGGCAAA+AGG - chr6_3:92047146-92047165 Msa0964900:intron 30.0%
! ACTTTTTATGAGAAGTTTGC+CGG + chr6_3:92047188-92047207 None:intergenic 30.0%
!! ATAAATAACTGCTGGTTTAG+AGG + chr6_3:92047508-92047527 None:intergenic 30.0%
! TTTTCAGCATAAATAACTGC+TGG + chr6_3:92047516-92047535 None:intergenic 30.0%
TCAACTACAATTGATTGAAG+AGG + chr6_3:92047683-92047702 None:intergenic 30.0%
ATTGCTGAGAATAATGTTGT+CGG - chr6_3:92047727-92047746 Msa0964900:intron 30.0%
TTCATGAAAAAACTTGCCTT+GGG + chr6_3:92047932-92047951 None:intergenic 30.0%
TTTCATGAAAAAACTTGCCT+TGG + chr6_3:92047933-92047952 None:intergenic 30.0%
TAAATTTAAAGAACTTGCCG+CGG + chr6_3:92048145-92048164 None:intergenic 30.0%
TTAGATGTACCTTCTTCATT+TGG + chr6_3:92048391-92048410 None:intergenic 30.0%
! AAATGAAGAAGGTACATCTA+AGG - chr6_3:92048390-92048409 Msa0964900:intron 30.0%
! TTTATTTGAACTTCGGCTTT+TGG + chr6_3:92048466-92048485 None:intergenic 30.0%
AAAAGCCGAAGTTCAAATAA+AGG - chr6_3:92048465-92048484 Msa0964900:intron 30.0%
GTTCAAATAAAGGATGTTGA+AGG - chr6_3:92048475-92048494 Msa0964900:intron 30.0%
! GAAATTGATGGCTATAATTC+TGG + chr6_3:92048699-92048718 None:intergenic 30.0%
ACATATATATCGAAGCTGTT+TGG - chr6_3:92048814-92048833 Msa0964900:intron 30.0%
!!! ATATAATCCGAAGGGTATTT+TGG - chr6_3:92048876-92048895 Msa0964900:intron 30.0%
!!! TATAATCCGAAGGGTATTTT+GGG - chr6_3:92048877-92048896 Msa0964900:intron 30.0%
! AATTTTCCCAAAATACCCTT+CGG + chr6_3:92048886-92048905 None:intergenic 30.0%
!! GTATTTTGGGAAAATTTGCA+TGG - chr6_3:92048890-92048909 Msa0964900:intron 30.0%
TCAATTTCAACTCTCATTCA+TGG - chr6_3:92049055-92049074 Msa0964900:intron 30.0%
TTGATCTTCATCCAAGAATT+AGG + chr6_3:92049084-92049103 None:intergenic 30.0%
! AAAGTCACAGTATGTGTTTT+TGG + chr6_3:92049123-92049142 None:intergenic 30.0%
TGAAGTGAAGAATTTACATG+TGG - chr6_3:92049499-92049518 Msa0964900:intron 30.0%
AATAACGAGGTTTCAAAAAG+TGG - chr6_3:92049725-92049744 Msa0964900:intron 30.0%
TACTTGTCCCATTTATTCTA+TGG + chr6_3:92049831-92049850 None:intergenic 30.0%
AGAATAAATGGGACAAGTAA+AGG - chr6_3:92049832-92049851 Msa0964900:intron 30.0%
! TTTGTTGTAATGCTATGAGA+AGG - chr6_3:92049863-92049882 Msa0964900:intron 30.0%
TAAATAATCTGTGGTTTCAG+TGG - chr6_3:92050089-92050108 Msa0964900:intron 30.0%
TTACTCAACAACTTCTATGT+TGG - chr6_3:92050112-92050131 Msa0964900:intron 30.0%
TTGATATTACAAACTTGTCC+TGG - chr6_3:92050241-92050260 Msa0964900:intron 30.0%
TAAAATGTGTAGGAAAAACC+AGG + chr6_3:92050262-92050281 None:intergenic 30.0%
! TGGTTTTTCCTACACATTTT+AGG - chr6_3:92050261-92050280 Msa0964900:intron 30.0%
TTCCTGGAAAAAATGTTGAT+AGG + chr6_3:92050301-92050320 None:intergenic 30.0%
! CTGAATGATAGTACACTTTT+TGG - chr6_3:92050412-92050431 Msa0964900:intron 30.0%
TGTAATGTACTCTGAATGTT+TGG + chr6_3:92050599-92050618 None:intergenic 30.0%
GCATACACTCTCTTAATTAT+TGG + chr6_3:92050857-92050876 None:intergenic 30.0%
TGTGATATTCAACATGCTTA+TGG + chr6_3:92050917-92050936 None:intergenic 30.0%
! ACTGAATGATGTCGTATTTT+AGG + chr6_3:92050940-92050959 None:intergenic 30.0%
ATTAAATTAAGGACGTCCAA+AGG - chr6_3:92051519-92051538 Msa0964900:intron 30.0%
ACTATATATACCTCTCTTTC+TGG - chr6_3:92052090-92052109 Msa0964900:CDS 30.0%
GTGAGTACAAAAATCAACTA+CGG + chr6_3:92052162-92052181 None:intergenic 30.0%
! TTCTTCTTCAATTTAGGGTT+AGG - chr6_3:92052247-92052266 Msa0964900:intron 30.0%
! TCTTCTTCAATTTAGGGTTA+GGG - chr6_3:92052248-92052267 Msa0964900:intron 30.0%
! CCTTTTGCCATAATTATATG+TGG + chr6_3:92047149-92047168 None:intergenic 30.0%
CCACATATAATTATGGCAAA+AGG - chr6_3:92047146-92047165 Msa0964900:intron 30.0%
!!! AATATAAGTTTGCCGGTTTT+TGG + chr6_3:92052447-92052466 None:intergenic 30.0%
AAAAAATGATACAGATCACC+AGG - chr6_3:92052467-92052486 Msa0964900:intron 30.0%
AAAAAAGGAAGCTGAAATTC+TGG - chr6_3:92052873-92052892 Msa0964900:intron 30.0%
! AAGCTGAAATTCTGGAAATA+AGG - chr6_3:92052881-92052900 Msa0964900:intron 30.0%
! TGAAATTCTGGAAATAAGGA+AGG - chr6_3:92052885-92052904 Msa0964900:intron 30.0%
GAAAAAAAGCAAGGAAAAGA+AGG - chr6_3:92052984-92053003 Msa0964900:intron 30.0%
CTAAAAAAGTTTGTGAGGAA+GGG - chr6_3:92053067-92053086 Msa0964900:CDS 30.0%
TAAAAAAGTTTGTGAGGAAG+GGG - chr6_3:92053068-92053087 Msa0964900:CDS 30.0%
CAAAGTAAAACTGAGTTGCA+AGG + chr6_3:92046397-92046416 None:intergenic 35.0%
! CTTGCAACTCAGTTTTACTT+TGG - chr6_3:92046395-92046414 Msa0964900:CDS 35.0%
AAAATACAAGTCTTCACCAG+GGG + chr6_3:92046504-92046523 None:intergenic 35.0%
TCAAAGGTTCAAAGCTACAA+GGG - chr6_3:92046543-92046562 Msa0964900:CDS 35.0%
ATTAAAAGGAGGAGAAGACA+CGG + chr6_3:92046663-92046682 None:intergenic 35.0%
! AGTGCATGGATTTGATTTAG+AGG - chr6_3:92046734-92046753 Msa0964900:intron 35.0%
! GTGCATGGATTTGATTTAGA+GGG - chr6_3:92046735-92046754 Msa0964900:intron 35.0%
ATATACCTCTATTGCCAGTT+AGG - chr6_3:92046775-92046794 Msa0964900:CDS 35.0%
TATACCTCTATTGCCAGTTA+GGG - chr6_3:92046776-92046795 Msa0964900:CDS 35.0%
GTGAGTGCAAAAATGAACTA+CGG + chr6_3:92046842-92046861 None:intergenic 35.0%
AATGCTTCTTCTCTAGTCTA+GGG - chr6_3:92047008-92047027 Msa0964900:intron 35.0%
TCAGTCATTTGTGGAAGATT+GGG + chr6_3:92047085-92047104 None:intergenic 35.0%
AGAAATCTAAGCCAACTACT+TGG - chr6_3:92047110-92047129 Msa0964900:intron 35.0%
GAAATCTAAGCCAACTACTT+GGG - chr6_3:92047111-92047130 Msa0964900:intron 35.0%
TCAGGACCCACATATAATTA+TGG - chr6_3:92047139-92047158 Msa0964900:intron 35.0%
AATTATGGCAAAAGGAGATC+TGG - chr6_3:92047154-92047173 Msa0964900:intron 35.0%
ATTATGGCAAAAGGAGATCT+GGG - chr6_3:92047155-92047174 Msa0964900:intron 35.0%
AAAAAGTGATAGAGATCACC+AGG - chr6_3:92047201-92047220 Msa0964900:intron 35.0%
ACGATCAAAAAAATCATGCC+TGG + chr6_3:92047222-92047241 None:intergenic 35.0%
TCGTGATTTAAATCAGCATC+AGG + chr6_3:92047387-92047406 None:intergenic 35.0%
!! TGATGCTGATTTAAATCACG+AGG - chr6_3:92047386-92047405 Msa0964900:intron 35.0%
TATTTATGCTGAAAACTGCG+TGG - chr6_3:92047521-92047540 Msa0964900:intron 35.0%
! TCGAAGTTCTTTACGGTTTT+TGG + chr6_3:92047578-92047597 None:intergenic 35.0%
AAAACCGTAAAGAACTTCGA+AGG - chr6_3:92047578-92047597 Msa0964900:intron 35.0%
GATTGAAGAGGAAAACAAGA+AGG + chr6_3:92047671-92047690 None:intergenic 35.0%
AGAATAATGTTGTCGGATTC+AGG - chr6_3:92047734-92047753 Msa0964900:intron 35.0%
GAATAATGTTGTCGGATTCA+GGG - chr6_3:92047735-92047754 Msa0964900:intron 35.0%
AATAATGTTGTCGGATTCAG+GGG - chr6_3:92047736-92047755 Msa0964900:intron 35.0%
! TTTTAGGCTTCAATTTCTGC+TGG + chr6_3:92048062-92048081 None:intergenic 35.0%
AAATTTAAAGAACTTGCCGC+GGG + chr6_3:92048144-92048163 None:intergenic 35.0%
!! CTGCTTTTCAATTTCATCCA+GGG + chr6_3:92048266-92048285 None:intergenic 35.0%
!! TCTGCTTTTCAATTTCATCC+AGG + chr6_3:92048267-92048286 None:intergenic 35.0%
AGATGAAAAAGCTGCATCTA+AGG - chr6_3:92048354-92048373 Msa0964900:intron 35.0%
GCAGTTATGTAGAGTAAGAA+AGG - chr6_3:92048514-92048533 Msa0964900:intron 35.0%
TCTCTAACACTCACAACTTA+AGG + chr6_3:92048565-92048584 None:intergenic 35.0%
!! AAATTGTGTGGTTCGGATTT+TGG - chr6_3:92048728-92048747 Msa0964900:intron 35.0%
!! AATTGTGTGGTTCGGATTTT+GGG - chr6_3:92048729-92048748 Msa0964900:intron 35.0%
! GAGTGACAAGTTTCGATTTT+TGG - chr6_3:92048981-92049000 Msa0964900:intron 35.0%
ATTCATGGCTTCCTAATTCT+TGG - chr6_3:92049070-92049089 Msa0964900:intron 35.0%
GGGAAATCATACAGAATTGT+TGG + chr6_3:92049196-92049215 None:intergenic 35.0%
! TAAAATGCAGCATTGGAAGA+TGG - chr6_3:92049331-92049350 Msa0964900:intron 35.0%
AGTGAAGAATTTACATGTGG+TGG - chr6_3:92049502-92049521 Msa0964900:intron 35.0%
! TGTACATTCATTTTCTCCCT+TGG - chr6_3:92049531-92049550 Msa0964900:intron 35.0%
CTTGAACACTCAATTCTAAG+GGG + chr6_3:92049643-92049662 None:intergenic 35.0%
CCTTGAACACTCAATTCTAA+GGG + chr6_3:92049644-92049663 None:intergenic 35.0%
CCTTAGAATTGAGTGTTCAA+GGG - chr6_3:92049642-92049661 Msa0964900:intron 35.0%
CTTAGAATTGAGTGTTCAAG+GGG - chr6_3:92049643-92049662 Msa0964900:intron 35.0%
TGATGTTGTGTCAAATAACG+AGG - chr6_3:92049712-92049731 Msa0964900:intron 35.0%
AGGTTTCAAAAAGTGGTGTT+TGG - chr6_3:92049732-92049751 Msa0964900:intron 35.0%
GGTTTCAAAAAGTGGTGTTT+GGG - chr6_3:92049733-92049752 Msa0964900:intron 35.0%
! GTGCTCTGGATATAAATATC+AGG - chr6_3:92049777-92049796 Msa0964900:intron 35.0%
! TATCAGGACGATTTTACTCA+AGG - chr6_3:92049793-92049812 Msa0964900:intron 35.0%
! ATCAGGACGATTTTACTCAA+GGG - chr6_3:92049794-92049813 Msa0964900:intron 35.0%
ATAAATGGGACAAGTAAAGG+TGG - chr6_3:92049835-92049854 Msa0964900:intron 35.0%
TAAATGGGACAAGTAAAGGT+GGG - chr6_3:92049836-92049855 Msa0964900:intron 35.0%
AAAAACACAAACTCGTGTAC+TGG + chr6_3:92049957-92049976 None:intergenic 35.0%
TGGTGCATAATATTCCATCT+TGG + chr6_3:92050150-92050169 None:intergenic 35.0%
ATGGAATATTATGCACCAAC+AGG - chr6_3:92050152-92050171 Msa0964900:intron 35.0%
AGTAAGTGCCTAAAATGTGT+AGG + chr6_3:92050272-92050291 None:intergenic 35.0%
! CTGGAAAAAATGTTGATAGG+AGG + chr6_3:92050298-92050317 None:intergenic 35.0%
!!! CTCCTATCAACATTTTTTCC+AGG - chr6_3:92050296-92050315 Msa0964900:intron 35.0%
TTCTACATTTCATTCCCAGT+TGG + chr6_3:92050358-92050377 None:intergenic 35.0%
!!! CTTTTTGGAGTTATCAACCA+CGG - chr6_3:92050427-92050446 Msa0964900:intron 35.0%
! TTCAATTTGGTTCAAATGCC+AGG - chr6_3:92050619-92050638 Msa0964900:intron 35.0%
ATTCCATAGCAGTAATTTCC+TGG + chr6_3:92050640-92050659 None:intergenic 35.0%
AGGAAATTACTGCTATGGAA+TGG - chr6_3:92050639-92050658 Msa0964900:intron 35.0%
GATATTCAACATGCTTATGG+TGG + chr6_3:92050914-92050933 None:intergenic 35.0%
AGTAGTGCATAGTCATACAT+TGG + chr6_3:92050978-92050997 None:intergenic 35.0%
CTCAAGTTAGTATGTGTTCA+AGG + chr6_3:92051017-92051036 None:intergenic 35.0%
! AATCTAGAGCAATAGCAGAT+TGG + chr6_3:92051106-92051125 None:intergenic 35.0%
!! GAACTTTGAGTACTGATAAG+TGG + chr6_3:92051195-92051214 None:intergenic 35.0%
ATAACCAACGACTACATGTT+AGG - chr6_3:92051366-92051385 Msa0964900:intron 35.0%
!!! TTGTTGGTTTTGGAATCAAC+TGG + chr6_3:92051394-92051413 None:intergenic 35.0%
AGCTAGAATTGTGTAAGTTG+CGG - chr6_3:92051578-92051597 Msa0964900:intron 35.0%
!! ATATACCTCTCTTTCTGGTT+AGG - chr6_3:92052095-92052114 Msa0964900:CDS 35.0%
!! TATACCTCTCTTTCTGGTTA+GGG - chr6_3:92052096-92052115 Msa0964900:CDS 35.0%
! TTTTGTACTCACTCATCAGA+AGG - chr6_3:92052170-92052189 Msa0964900:intron 35.0%
TCAGTCATTTGTGGAAGATT+GGG + chr6_3:92047085-92047104 None:intergenic 35.0%
AGAAATCTAAGCCAACTACT+TGG - chr6_3:92047110-92047129 Msa0964900:intron 35.0%
GAAATCTAAGCCAACTACTT+GGG - chr6_3:92047111-92047130 Msa0964900:intron 35.0%
TCAGGACCCACATATAATTA+TGG - chr6_3:92047139-92047158 Msa0964900:intron 35.0%
AATTATGGCAAAAGGAGATC+TGG - chr6_3:92047154-92047173 Msa0964900:intron 35.0%
ATTATGGCAAAAGGAGATCT+GGG - chr6_3:92047155-92047174 Msa0964900:intron 35.0%
ACGATCAAAAAAATCATGCC+TGG + chr6_3:92047222-92047241 None:intergenic 35.0%
AGGAATCAAAAAACTTCTGC+AGG + chr6_3:92052582-92052601 None:intergenic 35.0%
TCGTGATTTAAATCAGCATC+AGG + chr6_3:92047387-92047406 None:intergenic 35.0%
!! TGATGCTGATTTAAATCACG+AGG - chr6_3:92047386-92047405 Msa0964900:intron 35.0%
! TCGAAGTTCTTTACGGTTTT+CGG + chr6_3:92047578-92047597 None:intergenic 35.0%
AAAACCGTAAAGAACTTCGA+AGG - chr6_3:92047578-92047597 Msa0964900:intron 35.0%
TCTGGAAATAAGGAAGGAAA+AGG - chr6_3:92052891-92052910 Msa0964900:intron 35.0%
TGAAATGAAAAGGAAGGAAG+AGG - chr6_3:92052921-92052940 Msa0964900:intron 35.0%
AGCAGCTAAAAAAGTTTGTG+AGG - chr6_3:92053062-92053081 Msa0964900:CDS 35.0%
GCTAAAAAAGTTTGTGAGGA+AGG - chr6_3:92053066-92053085 Msa0964900:CDS 35.0%
CTTCGTTATGAATCGACCTT+TGG + chr6_3:92046351-92046370 None:intergenic 40.0%
! GGTCGATTCATAACGAAGAA+AGG - chr6_3:92046353-92046372 Msa0964900:CDS 40.0%
!! TACTTTGGCGTTGCTACTTT+CGG - chr6_3:92046410-92046429 Msa0964900:CDS 40.0%
!! CAAATACGTCGAGTTGATGA+AGG + chr6_3:92046460-92046479 None:intergenic 40.0%
! GTTTTATCCATATTTGCCCC+TGG - chr6_3:92046485-92046504 Msa0964900:CDS 40.0%
CTCAAAGGTTCAAAGCTACA+AGG - chr6_3:92046542-92046561 Msa0964900:CDS 40.0%
! CATGGATTTGATTTAGAGGG+AGG - chr6_3:92046738-92046757 Msa0964900:intron 40.0%
CATAATTGACGAACCCTAAC+TGG + chr6_3:92046792-92046811 None:intergenic 40.0%
TGAACTACGGAGACGAAAAT+CGG + chr6_3:92046829-92046848 None:intergenic 40.0%
! TTTTGCACTCACTCATCACA+AGG - chr6_3:92046850-92046869 Msa0964900:intron 40.0%
!! TTGTCGGATTTTAGGGGTTT+AGG - chr6_3:92046967-92046986 Msa0964900:intron 40.0%
!! TGTCGGATTTTAGGGGTTTA+GGG - chr6_3:92046968-92046987 Msa0964900:intron 40.0%
CAATGCTTCTTCTCTAGTCT+AGG - chr6_3:92047007-92047026 Msa0964900:intron 40.0%
CAGTCATTTGTGGAAGATTG+GGG + chr6_3:92047084-92047103 None:intergenic 40.0%
GTCAGTCATTTGTGGAAGAT+TGG + chr6_3:92047086-92047105 None:intergenic 40.0%
!!! ATGAGAAGTTTGCCGGTTTT+TGG + chr6_3:92047181-92047200 None:intergenic 40.0%
AGGAATCAAGAAACTTCTGC+AGG + chr6_3:92047320-92047339 None:intergenic 40.0%
TCAGCCTTCGAAGTTCTTTA+CGG + chr6_3:92047585-92047604 None:intergenic 40.0%
TTAACCTCTAAACCAGCAGT+TGG - chr6_3:92048216-92048235 Msa0964900:intron 40.0%
GCTGAAGTTCCAAATGAAGA+AGG - chr6_3:92048379-92048398 Msa0964900:intron 40.0%
AGTTGTGAGTGTTAGAGACT+TGG - chr6_3:92048567-92048586 Msa0964900:intron 40.0%
GTTGTGAGTGTTAGAGACTT+GGG - chr6_3:92048568-92048587 Msa0964900:intron 40.0%
AGATAATAACCAGACACGCA+TGG + chr6_3:92048618-92048637 None:intergenic 40.0%
!!! TGGTTCGGATTTTGGGATAA+GGG - chr6_3:92048736-92048755 Msa0964900:intron 40.0%
ATGGCGCATGAATACTTCAT+AGG - chr6_3:92048909-92048928 Msa0964900:intron 40.0%
TGGCGCATGAATACTTCATA+GGG - chr6_3:92048910-92048929 Msa0964900:intron 40.0%
GCATGAATACTTCATAGGGT+GGG - chr6_3:92048914-92048933 Msa0964900:intron 40.0%
AATTCTTGCAATTCCTGTCC+AGG - chr6_3:92049308-92049327 Msa0964900:intron 40.0%
! TTCCAATGCTGCATTTTACC+TGG + chr6_3:92049329-92049348 None:intergenic 40.0%
GAGAACAAATGCATGTCCAA+GGG + chr6_3:92049550-92049569 None:intergenic 40.0%
AGAGAACAAATGCATGTCCA+AGG + chr6_3:92049551-92049570 None:intergenic 40.0%
CCCTTAGAATTGAGTGTTCA+AGG - chr6_3:92049641-92049660 Msa0964900:intron 40.0%
CCCTTGAACACTCAATTCTA+AGG + chr6_3:92049645-92049664 None:intergenic 40.0%
AAATGGGACAAGTAAAGGTG+GGG - chr6_3:92049837-92049856 Msa0964900:intron 40.0%
! TTGGAGGGTATGTTTAGTCT+GGG - chr6_3:92050450-92050469 Msa0964900:intron 40.0%
GGACACAATAGACAAAACCA+CGG - chr6_3:92050472-92050491 Msa0964900:intron 40.0%
TGTACTCTGAATGTTTGGTC+TGG + chr6_3:92050594-92050613 None:intergenic 40.0%
ATGCCAGGAAATTACTGCTA+TGG - chr6_3:92050634-92050653 Msa0964900:intron 40.0%
TTTAACTGGAAAGTCAAGCG+AGG - chr6_3:92051483-92051502 Msa0964900:intron 40.0%
! GTCCAAAGGTCGATTCATAA+CGG - chr6_3:92046346-92046365 Msa0964900:CDS 40.0%
GAGCTTGTAATGTGGCATTA+CGG - chr6_3:92051804-92051823 Msa0964900:intron 40.0%
AGCTTGTAATGTGGCATTAC+GGG - chr6_3:92051805-92051824 Msa0964900:intron 40.0%
GGTTACACCTCTTCCTTTAA+CGG + chr6_3:92051870-92051889 None:intergenic 40.0%
TTTGGATGTGCTCGATTTCA+AGG + chr6_3:92051891-92051910 None:intergenic 40.0%
! ACATCCAAAGACAAGTGTTG+TGG - chr6_3:92051902-92051921 Msa0964900:CDS 40.0%
CATACCACAACACTTGTCTT+TGG + chr6_3:92051909-92051928 None:intergenic 40.0%
CAGTCATTTGTGGAAGATTG+GGG + chr6_3:92047084-92047103 None:intergenic 40.0%
GTCAGTCATTTGTGGAAGAT+TGG + chr6_3:92047086-92047105 None:intergenic 40.0%
!! CTAAACAACTGCTGGTTTAG+AGG + chr6_3:92052763-92052782 None:intergenic 40.0%
CTCTAAACCAGCAGTTGTTT+AGG - chr6_3:92052761-92052780 Msa0964900:intron 40.0%
! TTTTCAGCCTAAACAACTGC+TGG + chr6_3:92052771-92052790 None:intergenic 40.0%
TCAGCCTTCGAAGTTCTTTA+CGG + chr6_3:92047585-92047604 None:intergenic 40.0%
GGAAATAAGGAAGGAAAAGG+AGG - chr6_3:92052894-92052913 Msa0964900:intron 40.0%
AGGAGGAAGCTGAAATGAAA+AGG - chr6_3:92052911-92052930 Msa0964900:intron 40.0%
GGAAGCTGAAATGAAAAGGA+AGG - chr6_3:92052915-92052934 Msa0964900:intron 40.0%
AATGAAAAGGAAGGAAGAGG+AGG - chr6_3:92052924-92052943 Msa0964900:intron 40.0%
GCAAGGCGTATTACTATCTG+AGG + chr6_3:92046380-92046399 None:intergenic 45.0%
AAGGTTCAAAGCTACAAGGG+AGG - chr6_3:92046546-92046565 Msa0964900:CDS 45.0%
TCTTCCACAAATGACTGACG+AGG - chr6_3:92047087-92047106 Msa0964900:intron 45.0%
TTCTCCTCGTCAGTCATTTG+TGG + chr6_3:92047094-92047113 None:intergenic 45.0%
ATGCTGAAAACTGCGTGGTT+TGG - chr6_3:92047526-92047545 Msa0964900:intron 45.0%
! AAAACTGCGTGGTTTGGCAA+GGG - chr6_3:92047532-92047551 Msa0964900:intron 45.0%
TTGTCGGATTCAGGGGTTTA+GGG - chr6_3:92047743-92047762 Msa0964900:intron 45.0%
ATGTGGCAGTTAAACTGCAG+AGG + chr6_3:92047824-92047843 None:intergenic 45.0%
!!! CCATTTGCGGTTTTGAGATG+TGG + chr6_3:92047841-92047860 None:intergenic 45.0%
CCACATCTCAAAACCGCAAA+TGG - chr6_3:92047838-92047857 Msa0964900:intron 45.0%
CAATCACACTGCAAACAGGA+GGG + chr6_3:92047892-92047911 None:intergenic 45.0%
TCAATCACACTGCAAACAGG+AGG + chr6_3:92047893-92047912 None:intergenic 45.0%
TCGTCAATCACACTGCAAAC+AGG + chr6_3:92047896-92047915 None:intergenic 45.0%
TGTGTCTGATTTACAACCCG+CGG - chr6_3:92048125-92048144 Msa0964900:intron 45.0%
!! AACTCCAACTGCTGGTTTAG+AGG + chr6_3:92048223-92048242 None:intergenic 45.0%
CATACAACAACTCCAACTGC+TGG + chr6_3:92048231-92048250 None:intergenic 45.0%
!! GCTGATTTTAAAAGGGCTGC+AGG - chr6_3:92048292-92048311 Msa0964900:intron 45.0%
CTTAAGCTTCATTCTCCTGC+TGG + chr6_3:92048432-92048451 None:intergenic 45.0%
ATGGACAAGATTTGCGAGCT+TGG + chr6_3:92048599-92048618 None:intergenic 45.0%
AAATCTTGTCCATGCGTGTC+TGG - chr6_3:92048606-92048625 Msa0964900:intron 45.0%
!!! GTGGTTCGGATTTTGGGATA+AGG - chr6_3:92048735-92048754 Msa0964900:intron 45.0%
CGCATGAATACTTCATAGGG+TGG - chr6_3:92048913-92048932 Msa0964900:intron 45.0%
GGACTTAGATCTGCTGTTGT+AGG - chr6_3:92049168-92049187 Msa0964900:intron 45.0%
! ATGCTGCATTTTACCTGGAC+AGG + chr6_3:92049324-92049343 None:intergenic 45.0%
GTCCAGGTAAAATGCAGCAT+TGG - chr6_3:92049324-92049343 Msa0964900:intron 45.0%
!! AGTGGTGTTTGGGCTGTTTT+AGG - chr6_3:92049743-92049762 Msa0964900:intron 45.0%
!! GCTGTTTTAGGCACTGCAAT+TGG - chr6_3:92049755-92049774 Msa0964900:intron 45.0%
! AGGACGATTTTACTCAAGGG+TGG - chr6_3:92049797-92049816 Msa0964900:intron 45.0%
TTCTCGAATCTTTCGCTTCC+TGG + chr6_3:92050317-92050336 None:intergenic 45.0%
TTGGAGTTATCAACCACGGT+TGG - chr6_3:92050431-92050450 Msa0964900:intron 45.0%
AGTTATCAACCACGGTTGGA+GGG - chr6_3:92050435-92050454 Msa0964900:intron 45.0%
! GTTGGAGGGTATGTTTAGTC+TGG - chr6_3:92050449-92050468 Msa0964900:intron 45.0%
! TGGAGGGTATGTTTAGTCTG+GGG - chr6_3:92050451-92050470 Msa0964900:intron 45.0%
AAAACCACGGCAAAAACCCA+CGG - chr6_3:92050485-92050504 Msa0964900:intron 45.0%
AATGTTTGGTCTGGCGTTTG+AGG + chr6_3:92050585-92050604 None:intergenic 45.0%
! GAGCGTCAAAGTGTTTGTCA+TGG - chr6_3:92051034-92051053 Msa0964900:CDS 45.0%
CGATACTCGATAGTCGTGTT+TGG + chr6_3:92051067-92051086 None:intergenic 45.0%
CTAGAGCAATAGCAGATTGG+TGG + chr6_3:92051103-92051122 None:intergenic 45.0%
GGATCCTAACATGTAGTCGT+TGG + chr6_3:92051373-92051392 None:intergenic 45.0%
CTCCGTTATGAATCGACCTT+TGG + chr6_3:92051538-92051557 None:intergenic 45.0%
! GGTCGATTCATAACGGAGAA+AGG - chr6_3:92051540-92051559 Msa0964900:intron 45.0%
! TCATAACGGAGAAAGGACCT+CGG - chr6_3:92051547-92051566 Msa0964900:intron 45.0%
! ATTCTAGCTGCTACTATCCG+AGG + chr6_3:92051567-92051586 None:intergenic 45.0%
TTTGTGTCACGTTCGCAACA+AGG - chr6_3:92051637-92051656 Msa0964900:intron 45.0%
TACGCATGCGACAACTGTAT+CGG + chr6_3:92051685-92051704 None:intergenic 45.0%
AGTTGTCGCATGCGTATTTC+AGG - chr6_3:92051689-92051708 Msa0964900:intron 45.0%
GTTGTCGCATGCGTATTTCA+GGG - chr6_3:92051690-92051709 Msa0964900:intron 45.0%
TTGTCGCATGCGTATTTCAG+GGG - chr6_3:92051691-92051710 Msa0964900:intron 45.0%
GTCAACCACAAGGATCTGAT+TGG - chr6_3:92051754-92051773 Msa0964900:intron 45.0%
ACCACAAGGATCTGATTGGT+AGG - chr6_3:92051758-92051777 Msa0964900:intron 45.0%
CCACAAGGATCTGATTGGTA+GGG - chr6_3:92051759-92051778 Msa0964900:intron 45.0%
CAGCACTTGAGCTTGTAATG+TGG - chr6_3:92051796-92051815 Msa0964900:intron 45.0%
ACCTGAAGGAAAGCCGTTAA+AGG - chr6_3:92051854-92051873 Msa0964900:CDS 45.0%
TCCTTTAACGGCTTTCCTTC+AGG + chr6_3:92051858-92051877 None:intergenic 45.0%
AGGAAAGCCGTTAAAGGAAG+AGG - chr6_3:92051860-92051879 Msa0964900:CDS 45.0%
TCTTCCACAAATGACTGACG+AGG - chr6_3:92047087-92047106 Msa0964900:intron 45.0%
TTCTCCTCGTCAGTCATTTG+TGG + chr6_3:92047094-92047113 None:intergenic 45.0%
TGTTTAGGCTGAAAACTGCG+TGG - chr6_3:92052776-92052795 Msa0964900:intron 45.0%
! AAAACTGCGTGGTTTGGCAA+AGG - chr6_3:92047532-92047551 Msa0964900:intron 45.0%
GGAAGCTGAAAGGAAGGAAA+AGG - chr6_3:92052945-92052964 Msa0964900:intron 45.0%
AGCTGAAAGGAAGGAAAAGG+AGG - chr6_3:92052948-92052967 Msa0964900:intron 45.0%
!! AGAAAATAAATAATATTAAA+GGG + chr6_3:92047294-92047313 None:intergenic 5.0%
!! TAGAAAATAAATAATATTAA+AGG + chr6_3:92047295-92047314 None:intergenic 5.0%
!! AAAATAAATAACAAATAAAA+TGG + chr6_3:92049449-92049468 None:intergenic 5.0%
GTCTTCACCAGGGGCAAATA+TGG + chr6_3:92046495-92046514 None:intergenic 50.0%
GAGGAGAAGACACGGTTCTT+TGG + chr6_3:92046655-92046674 None:intergenic 50.0%
CGAACCCTAACTGGCAATAG+AGG + chr6_3:92046783-92046802 None:intergenic 50.0%
GGAAGAGAGTTAAGCTGCAG+AGG + chr6_3:92047063-92047082 None:intergenic 50.0%
CCTGAGATGACCCAAGTAGT+TGG + chr6_3:92047124-92047143 None:intergenic 50.0%
CCAACTACTTGGGTCATCTC+AGG - chr6_3:92047121-92047140 Msa0964900:intron 50.0%
AGGAGATCTGGGCCAAAAAC+CGG - chr6_3:92047166-92047185 Msa0964900:intron 50.0%
! GAAAACTGCGTGGTTTGGCA+AGG - chr6_3:92047531-92047550 Msa0964900:intron 50.0%
GTTGTCGGATTCAGGGGTTT+AGG - chr6_3:92047742-92047761 Msa0964900:intron 50.0%
AAACAGGAGGGAAGTGGAAG+TGG + chr6_3:92047880-92047899 None:intergenic 50.0%
CGAACTTTCTGCAGAACCCA+AGG - chr6_3:92047913-92047932 Msa0964900:intron 50.0%
TGGAGTTGTTGTATGCAGCG+CGG - chr6_3:92048236-92048255 Msa0964900:intron 50.0%
AGCTGAAGTTCCAAACCAGC+AGG - chr6_3:92048414-92048433 Msa0964900:intron 50.0%
! GCTTCATTCTCCTGCTGGTT+TGG + chr6_3:92048427-92048446 None:intergenic 50.0%
GGCTAATGCAGTCTCCAAGA+TGG - chr6_3:92050133-92050152 Msa0964900:intron 50.0%
GAGTTATCAACCACGGTTGG+AGG - chr6_3:92050434-92050453 Msa0964900:intron 50.0%
CTAAACATACCCTCCAACCG+TGG + chr6_3:92050447-92050466 None:intergenic 50.0%
CAACAAGGTTCCTTCACACC+AGG - chr6_3:92051652-92051671 Msa0964900:intron 50.0%
AAGGTTCCTTCACACCAGGT+GGG - chr6_3:92051656-92051675 Msa0964900:intron 50.0%
AACTGTATCGGATTCCCACC+TGG + chr6_3:92051673-92051692 None:intergenic 50.0%
CGTATTTCAGGGGCGATTTC+TGG - chr6_3:92051701-92051720 Msa0964900:intron 50.0%
CCCTACCAATCAGATCCTTG+TGG + chr6_3:92051762-92051781 None:intergenic 50.0%
CGAACCCTAACCAGAAAGAG+AGG + chr6_3:92052103-92052122 None:intergenic 50.0%
GGAAGAGAGTTAAGCTGCAG+AGG + chr6_3:92047063-92047082 None:intergenic 50.0%
CCTGAGATGACCCAAGTAGT+TGG + chr6_3:92047124-92047143 None:intergenic 50.0%
CCAACTACTTGGGTCATCTC+AGG - chr6_3:92047121-92047140 Msa0964900:intron 50.0%
AGGAGATCTGGGCCAAAAAC+CGG - chr6_3:92047166-92047185 Msa0964900:intron 50.0%
AGGCTGAAAACTGCGTGGTT+TGG - chr6_3:92052781-92052800 Msa0964900:intron 50.0%
AGGAAGAGGAGGAAGCTGAA+AGG - chr6_3:92052935-92052954 Msa0964900:intron 50.0%
AGAGGAGGAAGCTGAAAGGA+AGG - chr6_3:92052939-92052958 Msa0964900:intron 50.0%
AAACCGCAAATGGCTCCACC+CGG - chr6_3:92047848-92047867 Msa0964900:intron 55.0%
AAGTGGAAGTGGAGGAAGCC+GGG + chr6_3:92047869-92047888 None:intergenic 55.0%
GAAGTGGAAGTGGAGGAAGC+CGG + chr6_3:92047870-92047889 None:intergenic 55.0%
CACTGCAAACAGGAGGGAAG+TGG + chr6_3:92047886-92047905 None:intergenic 55.0%
! AGGCACTGCAATTGGTGCTC+TGG - chr6_3:92049763-92049782 Msa0964900:intron 55.0%
GCAAAAACCCACGGTAGGTG+AGG - chr6_3:92050494-92050513 Msa0964900:intron 55.0%
AAAACCCACGGTAGGTGAGG+TGG - chr6_3:92050497-92050516 Msa0964900:intron 55.0%
ACTTCCACCTCACCTACCGT+GGG + chr6_3:92050504-92050523 None:intergenic 55.0%
AACTTCCACCTCACCTACCG+TGG + chr6_3:92050505-92050524 None:intergenic 55.0%
CAAGGTTCCTTCACACCAGG+TGG - chr6_3:92051655-92051674 Msa0964900:intron 55.0%
GAGCAGGCAAGTCAACCACA+AGG - chr6_3:92051744-92051763 Msa0964900:intron 55.0%
TCAGTTGTCGACGCACCTGA+AGG - chr6_3:92051840-92051859 Msa0964900:CDS 55.0%
AAGCCGGGTGGAGCCATTTG+CGG + chr6_3:92047854-92047873 None:intergenic 60.0%
CAGGAGGGAAGTGGAAGTGG+AGG + chr6_3:92047877-92047896 None:intergenic 60.0%
! CCTACCGTGGGTTTTTGCCG+TGG + chr6_3:92050492-92050511 None:intergenic 60.0%
CCACGGCAAAAACCCACGGT+AGG - chr6_3:92050489-92050508 Msa0964900:intron 60.0%
CGGATTCCCACCTGGTGTGA+AGG + chr6_3:92051665-92051684 None:intergenic 60.0%
TGGAAGTGGAGGAAGCCGGG+TGG + chr6_3:92047866-92047885 None:intergenic 65.0%
!! GGGGCGATTTCTGGTGCCAG+CGG - chr6_3:92051710-92051729 Msa0964900:intron 65.0%
!! GGGCGATTTCTGGTGCCAGC+GGG - chr6_3:92051711-92051730 Msa0964900:intron 65.0%
!! GGCGATTTCTGGTGCCAGCG+GGG - chr6_3:92051712-92051731 Msa0964900:intron 65.0%
! TTTCTGGTGCCAGCGGGGCT+TGG - chr6_3:92051717-92051736 Msa0964900:intron 65.0%
! TTCTGGTGCCAGCGGGGCTT+GGG - chr6_3:92051718-92051737 Msa0964900:intron 65.0%
! GTATGCAGCGCGGACTGCCC+TGG - chr6_3:92048246-92048265 Msa0964900:intron 70.0%
TGCTCCTTCCCAAGCCCCGC+TGG + chr6_3:92051729-92051748 None:intergenic 70.0%
AGCGGGGCTTGGGAAGGAGC+AGG - chr6_3:92051728-92051747 Msa0964900:intron 70.0%
GGTGCCAGCGGGGCTTGGGA+AGG - chr6_3:92051722-92051741 Msa0964900:intron 75.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 92046344 92053104 92046344 ID=Msa0964900;Name=Msa0964900
chr6_3 mRNA 92046344 92053104 92046344 ID=Msa0964900-mRNA-1;Parent=Msa0964900;Name=Msa0964900-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0|0.85|0.16|0.14|7|0|337
chr6_3 exon 92053017 92053104 92053017 ID=Msa0964900-mRNA-1:exon:16667;Parent=Msa0964900-mRNA-1
chr6_3 exon 92052316 92052419 92052316 ID=Msa0964900-mRNA-1:exon:16666;Parent=Msa0964900-mRNA-1
chr6_3 exon 92052086 92052124 92052086 ID=Msa0964900-mRNA-1:exon:16665;Parent=Msa0964900-mRNA-1
chr6_3 exon 92051817 92051928 92051817 ID=Msa0964900-mRNA-1:exon:16664;Parent=Msa0964900-mRNA-1
chr6_3 exon 92051028 92051194 92051028 ID=Msa0964900-mRNA-1:exon:16663;Parent=Msa0964900-mRNA-1
chr6_3 exon 92046746 92046862 92046746 ID=Msa0964900-mRNA-1:exon:16662;Parent=Msa0964900-mRNA-1
chr6_3 exon 92046344 92046730 92046344 ID=Msa0964900-mRNA-1:exon:16661;Parent=Msa0964900-mRNA-1
chr6_3 CDS 92053017 92053104 92053017 ID=Msa0964900-mRNA-1:cds;Parent=Msa0964900-mRNA-1
chr6_3 CDS 92052316 92052419 92052316 ID=Msa0964900-mRNA-1:cds;Parent=Msa0964900-mRNA-1
chr6_3 CDS 92052086 92052124 92052086 ID=Msa0964900-mRNA-1:cds;Parent=Msa0964900-mRNA-1
chr6_3 CDS 92051817 92051928 92051817 ID=Msa0964900-mRNA-1:cds;Parent=Msa0964900-mRNA-1
chr6_3 CDS 92051028 92051194 92051028 ID=Msa0964900-mRNA-1:cds;Parent=Msa0964900-mRNA-1
chr6_3 CDS 92046746 92046862 92046746 ID=Msa0964900-mRNA-1:cds;Parent=Msa0964900-mRNA-1
chr6_3 CDS 92046344 92046730 92046344 ID=Msa0964900-mRNA-1:cds;Parent=Msa0964900-mRNA-1
Gene Sequence

>Msa0964900

ATGTCCAAAGGTCGATTCATAACGAAGAAAGGACCTCAGATAGTAATACGCCTTGCAACTCAGTTTTACTTTGGCGTTGCTACTTTCGGGTTTGCGATTTTCATTCGTCTTTCATTTTACCTCTGCAGCTTAACTCTCTTCCCCAATCTTCCACAAATGACTGACGAGGAGAAATCTAAGCCAACTACTTGGAAGTTTCTTGATTCCTATTATGATGAAGTGATTGAAGACTTATTTATGCTGAAAACTGCGTGGTTTGGCAAGGGTCATTATAGAGATTATGTTGCCAAAAACCGTAAAGAACTTCGAAGGCTGAAAAAGCAAATTAAAAAACATGAGGTTCCGCGGACTGCCCTGGATGAAATTGAAAAGCAGAAAGAAGCTGATTTTAAAAGGGCTGCAGGTGAAATTAAGAAACTGAGAGTTCAAATTCAAAAGAAGATAGATGAAAAAGCTGCATCTAAGGCAGCTGAAGTTCCAAATGAAGAAGGTACATCTAAGGCAGCTGAAAAGTTTTTTGATTCCTATTATGATGAAGTGATTGAAGACGTTCGTAGTTGCATCAATAAGCCTGATGCTGATTTAAATCACGAGGCAAGTTTTTCTCTAACAATGTTTTTGATTCAATTTCTTTGTTCATATTTGAGTTCTTTAATATTCATTAATTATCCTCTAAACCAGCAGTTGTTTAGGCTGAAAACTGCGTGGTTTGGCAAAGGTCATTATAGAGATTATGTTGCCGAAAACCGTAAAGAACTTCGAAGGCTGAAAAAGCAAATTAAAAAAAAGGAAGCTGAAATTCTGGAAATAAGGAAGGAAAAGGAGGAAGCTGAAATGAAAAGGAAGGAAGAGGAGGAAGCTGAAAGGAAGGAAAAGGAGGAAGCTGAAATTCTGAAAAAAAGCAAGGAAAAGAAGGAAGCTAAAATTCAGAAAAAGAAAATGAAAAAGAAGGAAGCTAAAATTCGAAAGCAAGCAGCTAAAAAAGTTTGTGAGGAAGGGGCTAAAGCATGTTAA

Protein sequence

>Msa0964900

MSKGRFITKKGPQIVIRLATQFYFGVATFGFAIFIRLSFYLCSLTLFPNLPQMTDEEKSKPTTWKFLDSYYDEVIEDLFMLKTAWFGKGHYRDYVAKNRKELRRLKKQIKKHEVPRTALDEIEKQKEADFKRAAGEIKKLRVQIQKKIDEKAASKAAEVPNEEGTSKAAEKFFDSYYDEVIEDVRSCINKPDADLNHEASFSLTMFLIQFLCSYLSSLIFINYPLNQQLFRLKTAWFGKGHYRDYVAENRKELRRLKKQIKKKEAEILEIRKEKEEAEMKRKEEEEAERKEKEEAEILKKSKEKKEAKIQKKKMKKKEAKIRKQAAKKVCEEGAKAC*