AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0927380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0927380 MtrunA17_Chr6g0485511 58.824 102 40 2 69 170 14 113 1.91e-25 99.0
Msa0927380 MtrunA17_Chr6g0485551 62.567 187 21 2 170 338 41 196 1.06e-24 99.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 49 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATCACTTCATCATAAA+AGG 0.232879 6_2:-71707085 None:intergenic
TACTTTGGCGTTGCTACTTT+CGG 0.312696 6_2:+71700902 Msa0927380:CDS
TTAGATGTACCTTCTTCATT+TGG 0.332645 6_2:-71702876 None:intergenic
TCAGCCTTCGAAGTTCTTTA+CGG 0.344809 6_2:-71702074 None:intergenic
TCAGCCTTCGAAGTTCTTTA+CGG 0.344809 6_2:-71707326 None:intergenic
CTAAACAACTGCTGGTTTAG+AGG 0.345330 6_2:-71707249 None:intergenic
AAGTTGAAATTCTGGAAATA+AGG 0.355807 6_2:+71707370 Msa0927380:CDS
TTCAATCACTTCATCATAAT+AGG 0.366272 6_2:-71701829 None:intergenic
GTCAGTCATTTGTGGAAGAT+TGG 0.376252 6_2:-71701575 None:intergenic
CTCCGTTATGAATCGACCTT+TGG 0.379986 6_2:-71700840 None:intergenic
TCAGTCATTTGTGGAAGATT+GGG 0.381276 6_2:-71701574 None:intergenic
AAATGAAGAAGGTACATCTA+AGG 0.414920 6_2:+71702878 Msa0927380:CDS
AGGCTGAAAACTGCGTGGTT+TGG 0.421494 6_2:+71707270 Msa0927380:CDS
TTCTCCTCGTCAGTCATTTG+TGG 0.435006 6_2:-71701583 None:intergenic
GGAAGCTGAAAGGAAGGAAA+AGG 0.444058 6_2:+71707434 Msa0927380:CDS
AGAGGAGGAAGCTGAAAGGA+AGG 0.454150 6_2:+71707428 Msa0927380:CDS
CTCTAAACCAGCAGTTGTTT+AGG 0.457152 6_2:+71707250 Msa0927380:CDS
TCGTGATTTAAATCAGCATC+AGG 0.464071 6_2:-71707132 None:intergenic
AGAAATCTAAGCCAACTACT+TGG 0.472779 6_2:+71701602 Msa0927380:CDS
AGGAGGAAGCTGAAATGAAA+AGG 0.473270 6_2:+71707400 Msa0927380:CDS
ATGCTGAAAACTGCGTGGTT+TGG 0.474624 6_2:+71702018 Msa0927380:CDS
GGAAGCTGAAATGAAAAGGA+AGG 0.493440 6_2:+71707404 Msa0927380:CDS
TCTGGAAATAAGGAAGGAAA+AGG 0.493692 6_2:+71707380 Msa0927380:CDS
AGCTGAAAGGAAGGAAAAGG+AGG 0.497172 6_2:+71707437 Msa0927380:CDS
GTATGCAGCGCGGACTGCCC+TGG 0.503284 6_2:+71702734 Msa0927380:intron
AGGAAGAGGAGGAAGCTGAA+AGG 0.516462 6_2:+71707424 Msa0927380:CDS
GGTCGATTCATAACGGAGAA+AGG 0.518749 6_2:+71700845 Msa0927380:CDS
GAAATCTAAGCCAACTACTT+GGG 0.528517 6_2:+71701603 Msa0927380:CDS
TGAAATTCTGGAAATAAGGA+AGG 0.531101 6_2:+71707374 Msa0927380:CDS
TGAAATGAAAAGGAAGGAAG+AGG 0.532757 6_2:+71707410 Msa0927380:CDS
CCTGAGATGACCCAAGTAGT+TGG 0.545425 6_2:-71701613 None:intergenic
GGAAATAAGGAAGGAAAAGG+AGG 0.550433 6_2:+71707383 Msa0927380:CDS
CAGTCATTTGTGGAAGATTG+GGG 0.559329 6_2:-71701573 None:intergenic
AAAACTGCGTGGTTTGGCAA+AGG 0.574300 6_2:+71707276 Msa0927380:CDS
GAAAACTGCGTGGTTTGGCA+AGG 0.583493 6_2:+71702023 Msa0927380:CDS
GGAAGAGAGTTAAGCTGCAG+AGG 0.584660 6_2:-71701552 None:intergenic
GTCCAAAGGTCGATTCATAA+CGG 0.585547 6_2:+71700838 Msa0927380:CDS
GCTGAAGTTCCAAATGAAGA+AGG 0.589203 6_2:+71702867 Msa0927380:CDS
AATGAAAAGGAAGGAAGAGG+AGG 0.596938 6_2:+71707413 Msa0927380:CDS
AAAACTGCGTGGTTTGGCAA+GGG 0.599527 6_2:+71702024 Msa0927380:CDS
CAAAGTAAAACTGAGTTGCA+AGG 0.623064 6_2:-71700886 None:intergenic
GCAAGGCGTATTACTATCTG+AGG 0.635089 6_2:-71700869 None:intergenic
ATTAAATTAAGGATGTCCAA+AGG 0.657895 6_2:+71700824 None:intergenic
AAAACCGTAAAGAACTTCGA+AGG 0.658384 6_2:+71707322 Msa0927380:CDS
AAAACCGTAAAGAACTTCGA+AGG 0.659678 6_2:+71702070 Msa0927380:CDS
TGATGCTGATTTAAATCACG+AGG 0.690474 6_2:+71707134 Msa0927380:CDS
TATTTATGCTGAAAACTGCG+TGG 0.707815 6_2:+71702013 Msa0927380:CDS
TCTTCCACAAATGACTGACG+AGG 0.715715 6_2:+71701579 Msa0927380:CDS
TGTTTAGGCTGAAAACTGCG+TGG 0.725223 6_2:+71707265 Msa0927380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAGTATAAACTATTAAA+AGG - chr6_2:71701169-71701188 None:intergenic 10.0%
!! TTTATAATATAAGAAATTGA+TGG - chr6_2:71703199-71703218 None:intergenic 10.0%
!! TAAAAATAACTAAAATCTAA+TGG + chr6_2:71705171-71705190 Msa0927380:intron 10.0%
!!! AATTATTTTAGAAACTTTAA+AGG + chr6_2:71705943-71705962 Msa0927380:intron 10.0%
!!! ATTAAATCTAAAACTAATTA+TGG + chr6_2:71706088-71706107 Msa0927380:intron 10.0%
!! TTATTAAAGAACTCAAAATA+TGG - chr6_2:71702510-71702529 None:intergenic 15.0%
!! TTCTTATATTATAAATTGTG+TGG + chr6_2:71703204-71703223 Msa0927380:intron 15.0%
!! ATATATTGAATGATCATTAT+TGG + chr6_2:71703441-71703460 Msa0927380:intron 15.0%
!! AAAAAGAAGATAAATGTTAT+GGG - chr6_2:71703495-71703514 None:intergenic 15.0%
!! AAAAAAGAAGATAAATGTTA+TGG - chr6_2:71703496-71703515 None:intergenic 15.0%
!! AAATAAATAAACAACATGAA+AGG - chr6_2:71704093-71704112 None:intergenic 15.0%
!! AAGTATTCTAAATCAAAATA+TGG + chr6_2:71705917-71705936 Msa0927380:intron 15.0%
!! AATGAAGAATAAATAACTTA+CGG + chr6_2:71706445-71706464 Msa0927380:intron 15.0%
!!! ATTTTTTAATATAAGTTTGC+CGG - chr6_2:71706936-71706955 None:intergenic 15.0%
!! GAAAAAGCAAATTAAAAAAA+AGG + chr6_2:71707347-71707366 Msa0927380:CDS 15.0%
!! AAGTATAAACTATTAAAAGG+AGG - chr6_2:71701166-71701185 None:intergenic 20.0%
!! TATAATATATTCTTAGTGCA+TGG + chr6_2:71701212-71701231 Msa0927380:intron 20.0%
!! ATAATATTAAAGGGCTAAAA+CGG - chr6_2:71701777-71701796 None:intergenic 20.0%
!! AAAGCAAATTAAAAAACATG+AGG + chr6_2:71702098-71702117 Msa0927380:CDS 20.0%
!! TGAAATGTTAACAAAGTTTA+TGG + chr6_2:71702440-71702459 Msa0927380:intron 20.0%
!! GAAATGTTAACAAAGTTTAT+GGG + chr6_2:71702441-71702460 Msa0927380:intron 20.0%
!! AAATGTTAACAAAGTTTATG+GGG + chr6_2:71702442-71702461 Msa0927380:intron 20.0%
!!! ATATGAGCAATAGTAATTTT+AGG - chr6_2:71702566-71702585 None:intergenic 20.0%
!! ATACATTACGATAGTTATAT+AGG - chr6_2:71703136-71703155 None:intergenic 20.0%
!! GTAATGTATCTGTAATATTA+TGG + chr6_2:71703147-71703166 Msa0927380:intron 20.0%
!! ATATTATAAATTGTGTGGTT+CGG + chr6_2:71703209-71703228 Msa0927380:intron 20.0%
!! AGTGAAAAATGAAAATGTAA+AGG + chr6_2:71703255-71703274 Msa0927380:intron 20.0%
!! GTGAAAAATGAAAATGTAAA+GGG + chr6_2:71703256-71703275 Msa0927380:intron 20.0%
!! TGAAAAATGAAAATGTAAAG+GGG + chr6_2:71703257-71703276 Msa0927380:intron 20.0%
!! ATTCAAAATAATACGAAAAC+TGG - chr6_2:71703343-71703362 None:intergenic 20.0%
!!! TTTTGAATTATATAATCCGA+AGG + chr6_2:71703355-71703374 Msa0927380:intron 20.0%
!! TTTGAATTATATAATCCGAA+GGG + chr6_2:71703356-71703375 Msa0927380:intron 20.0%
!!! TCGTTATTTTGATTTTATCA+AGG + chr6_2:71703634-71703653 Msa0927380:intron 20.0%
!!! CGTTATTTTGATTTTATCAA+GGG + chr6_2:71703635-71703654 Msa0927380:intron 20.0%
!! AAAAGAAAATAGAGCAATTA+GGG - chr6_2:71704070-71704089 None:intergenic 20.0%
!! ATTACTTACATGAATTGAAA+AGG + chr6_2:71704696-71704715 Msa0927380:intron 20.0%
!! AATGAAATGTAGAAGATTAA+TGG + chr6_2:71704852-71704871 Msa0927380:intron 20.0%
!!! TGAGTCTTATTTTTGTATTA+TGG + chr6_2:71705233-71705252 Msa0927380:intron 20.0%
!! CTAATTCTTATCATACAAAA+TGG - chr6_2:71705289-71705308 None:intergenic 20.0%
!! ATATATATACAGTAAGAGAA+CGG - chr6_2:71705649-71705668 None:intergenic 20.0%
!! GATTTAGAAAAAATCAAAGA+GGG - chr6_2:71705759-71705778 None:intergenic 20.0%
!! TGATTTAGAAAAAATCAAAG+AGG - chr6_2:71705760-71705779 None:intergenic 20.0%
!!! ACTGAAAACAAAGATTTTAT+TGG + chr6_2:71706531-71706550 Msa0927380:intron 20.0%
!! TGATTATTCTTCTTCAATTT+AGG + chr6_2:71706727-71706746 Msa0927380:intron 20.0%
!! GATTATTCTTCTTCAATTTA+GGG + chr6_2:71706728-71706747 Msa0927380:intron 20.0%
!! ATAATATTAAAGGGCTAAAA+CGG - chr6_2:71701777-71701796 None:intergenic 20.0%
!! GAAAAAGAAAATGAAAAAGA+AGG + chr6_2:71707509-71707528 Msa0927380:CDS 20.0%
!! TTAAGTTATCTGTTTCTCAA+AGG + chr6_2:71701019-71701038 Msa0927380:intron 25.0%
!! ATTTTGCAACATTCTTTAGT+AGG + chr6_2:71701119-71701138 Msa0927380:intron 25.0%
!! TTTTGCAACATTCTTTAGTA+GGG + chr6_2:71701120-71701139 Msa0927380:intron 25.0%
!! TTGAATCTATGATTGATTTC+TGG + chr6_2:71701428-71701447 Msa0927380:intron 25.0%
!! TGAATCTATGATTGATTTCT+GGG + chr6_2:71701429-71701448 Msa0927380:intron 25.0%
!! AATAATCTTGTCGGATTTTA+GGG + chr6_2:71701452-71701471 Msa0927380:intron 25.0%
!! CTTTTGCCATAATTATATGT+GGG - chr6_2:71701640-71701659 None:intergenic 25.0%
! TTCAATCACTTCATCATAAT+AGG - chr6_2:71701832-71701851 None:intergenic 25.0%
!!! AGAAAGAAGCTGATTTTAAA+AGG + chr6_2:71702772-71702791 Msa0927380:CDS 25.0%
!!! GAAAGAAGCTGATTTTAAAA+GGG + chr6_2:71702773-71702792 Msa0927380:CDS 25.0%
!! AACATCCTTTATTTGAACTT+CGG - chr6_2:71702961-71702980 None:intergenic 25.0%
! TGAAGGCTGTAAATAAAATT+AGG + chr6_2:71702980-71702999 Msa0927380:intron 25.0%
! AAATAATACGAAAACTGGTT+CGG - chr6_2:71703338-71703357 None:intergenic 25.0%
! AAGATCAATCATCAATGTAT+AGG + chr6_2:71703584-71703603 Msa0927380:intron 25.0%
! TAATGAGAGTTCTTAAAATC+GGG - chr6_2:71703704-71703723 None:intergenic 25.0%
! CTAATGAGAGTTCTTAAAAT+CGG - chr6_2:71703705-71703724 None:intergenic 25.0%
! ATAATGTAAAAGAGAGAGAA+AGG - chr6_2:71703732-71703751 None:intergenic 25.0%
!! TTTCTCTCTCTTTTACATTA+TGG + chr6_2:71703731-71703750 Msa0927380:intron 25.0%
! GATTTGACTAAGTATTCAAA+TGG - chr6_2:71703774-71703793 None:intergenic 25.0%
! AAAGAAAATAGAGCAATTAG+GGG - chr6_2:71704069-71704088 None:intergenic 25.0%
! GAAAAGAAAATAGAGCAATT+AGG - chr6_2:71704071-71704090 None:intergenic 25.0%
! AAAGACTACCATAGAATAAA+TGG + chr6_2:71704308-71704327 Msa0927380:intron 25.0%
! AAGACTACCATAGAATAAAT+GGG + chr6_2:71704309-71704328 Msa0927380:intron 25.0%
! TAAAAAACAAGCAAAGAACT+TGG + chr6_2:71704380-71704399 Msa0927380:intron 25.0%
!!! TTTTGTTGTACTTATGCTAT+AGG + chr6_2:71704461-71704480 Msa0927380:intron 25.0%
!! ATAGGTTATTGATAATTGCA+TGG + chr6_2:71704479-71704498 Msa0927380:intron 25.0%
! AAAGTGTACTAAATAATCTG+TGG + chr6_2:71704568-71704587 Msa0927380:intron 25.0%
! GCATATAAATTATTTCCTGT+TGG - chr6_2:71704658-71704677 None:intergenic 25.0%
!!! ATTTTAGAGAAGCTACAAAT+TGG - chr6_2:71705016-71705035 None:intergenic 25.0%
! AGAGTACATTACATTCAATT+TGG + chr6_2:71705094-71705113 Msa0927380:intron 25.0%
! TTAGTTATTACTGTTGTTGA+AGG + chr6_2:71705305-71705324 Msa0927380:intron 25.0%
!! TGTTGATGAGAAAGTAAAAT+CGG - chr6_2:71705821-71705840 None:intergenic 25.0%
!!! AGTGTAATTATTGTTGGTTT+TGG - chr6_2:71705890-71705909 None:intergenic 25.0%
! TGTTGTAGTGTAATTATTGT+TGG - chr6_2:71705896-71705915 None:intergenic 25.0%
!! AACTTTAAAGGTCATTTAAC+TGG + chr6_2:71705955-71705974 Msa0927380:intron 25.0%
! CTCGAAGAGAAATTAAATTA+AGG + chr6_2:71705994-71706013 Msa0927380:intron 25.0%
! ATTAAATTAAGGATGTCCAA+AGG + chr6_2:71706005-71706024 Msa0927380:intron 25.0%
! AAGAATAAATAACTTACGGA+TGG + chr6_2:71706449-71706468 Msa0927380:intron 25.0%
!! CTTTTGCCATAATTATATGT+GGG - chr6_2:71701640-71701659 None:intergenic 25.0%
! TTCAATCACTTCATCATAAA+AGG - chr6_2:71707088-71707107 None:intergenic 25.0%
! AAAAAAGGAAGTTGAAATTC+TGG + chr6_2:71707362-71707381 Msa0927380:CDS 25.0%
!! AAGTTGAAATTCTGGAAATA+AGG + chr6_2:71707370-71707389 Msa0927380:CDS 25.0%
!! TGAAATTCTGAAAAAAAGCA+AGG + chr6_2:71707464-71707483 Msa0927380:CDS 25.0%
TAAAATACAAGTCTTCACCA+GGG - chr6_2:71700997-71701016 None:intergenic 30.0%
TTAAAATACAAGTCTTCACC+AGG - chr6_2:71700998-71701017 None:intergenic 30.0%
GAGGTATATATAGTAAGAGT+GGG - chr6_2:71701256-71701275 None:intergenic 30.0%
! AGAGGTATATATAGTAAGAG+TGG - chr6_2:71701257-71701276 None:intergenic 30.0%
! ATTTCTGGGAATAATCTTGT+CGG + chr6_2:71701443-71701462 Msa0927380:intron 30.0%
! GAATAATCTTGTCGGATTTT+AGG + chr6_2:71701451-71701470 Msa0927380:intron 30.0%
! ATAATCTTGTCGGATTTTAG+GGG + chr6_2:71701453-71701472 Msa0927380:intron 30.0%
! CCTTTTGCCATAATTATATG+TGG - chr6_2:71701641-71701660 None:intergenic 30.0%
CCACATATAATTATGGCAAA+AGG + chr6_2:71701638-71701657 Msa0927380:intron 30.0%
! ACTTTTTATGAGAAGTTTGC+CGG - chr6_2:71701680-71701699 None:intergenic 30.0%
!! ATAAATAACTGCTGGTTTAG+AGG - chr6_2:71702000-71702019 None:intergenic 30.0%
! TTTTCAGCATAAATAACTGC+TGG - chr6_2:71702008-71702027 None:intergenic 30.0%
TCAACTACAATTGATTGAAG+AGG - chr6_2:71702175-71702194 None:intergenic 30.0%
ATTGCTGAGAATAATGTTGT+CGG + chr6_2:71702219-71702238 Msa0927380:intron 30.0%
TTCATGAAAAAACTTGCCTT+GGG - chr6_2:71702424-71702443 None:intergenic 30.0%
TTTCATGAAAAAACTTGCCT+TGG - chr6_2:71702425-71702444 None:intergenic 30.0%
TAAATTTAAAGAACTTGCCG+CGG - chr6_2:71702633-71702652 None:intergenic 30.0%
TTAGATGTACCTTCTTCATT+TGG - chr6_2:71702879-71702898 None:intergenic 30.0%
! AAATGAAGAAGGTACATCTA+AGG + chr6_2:71702878-71702897 Msa0927380:CDS 30.0%
! TTTATTTGAACTTCGGCTTT+TGG - chr6_2:71702954-71702973 None:intergenic 30.0%
AAAAGCCGAAGTTCAAATAA+AGG + chr6_2:71702953-71702972 Msa0927380:intron 30.0%
GTTCAAATAAAGGATGTTGA+AGG + chr6_2:71702963-71702982 Msa0927380:intron 30.0%
! GAAATTGATGGCTATAATTC+TGG - chr6_2:71703187-71703206 None:intergenic 30.0%
ACATATATATCGAAGCTGTT+TGG + chr6_2:71703302-71703321 Msa0927380:intron 30.0%
TCAATTTCAACTCTCATTCA+TGG + chr6_2:71703543-71703562 Msa0927380:intron 30.0%
! AAAGTCACAGTATGTGTTTT+TGG - chr6_2:71703611-71703630 None:intergenic 30.0%
TGAAGTGAAGAATTTACATG+TGG + chr6_2:71703987-71704006 Msa0927380:intron 30.0%
! GACGTGATTTATTGTTGATT+TGG + chr6_2:71704173-71704192 Msa0927380:intron 30.0%
AATAACGAGGTTTCAAAAAG+TGG + chr6_2:71704213-71704232 Msa0927380:intron 30.0%
TACTTGTCCCATTTATTCTA+TGG - chr6_2:71704319-71704338 None:intergenic 30.0%
AGAATAAATGGGACAAGTAA+AGG + chr6_2:71704320-71704339 Msa0927380:intron 30.0%
! TTTGTTGTAATGCTATGAGA+AGG + chr6_2:71704351-71704370 Msa0927380:intron 30.0%
TAAATAATCTGTGGTTTCAG+TGG + chr6_2:71704577-71704596 Msa0927380:intron 30.0%
TTACTCAACAACTTCTATGT+TGG + chr6_2:71704600-71704619 Msa0927380:intron 30.0%
TTGATATTACAAACTTGTCC+TGG + chr6_2:71704729-71704748 Msa0927380:intron 30.0%
TAAAATGTGTAGGAAAAACC+AGG - chr6_2:71704750-71704769 None:intergenic 30.0%
! TGGTTTTTCCTACACATTTT+AGG + chr6_2:71704749-71704768 Msa0927380:intron 30.0%
TTCCTGGAAAAAATGTTGAT+AGG - chr6_2:71704789-71704808 None:intergenic 30.0%
! CTGAATGATAGTACACTTTT+TGG + chr6_2:71704900-71704919 Msa0927380:intron 30.0%
TGTAATGTACTCTGAATGTT+TGG - chr6_2:71705087-71705106 None:intergenic 30.0%
GCATACACTCTCTTAATTAT+TGG - chr6_2:71705345-71705364 None:intergenic 30.0%
TGTGATATTCAACATGCTTA+TGG - chr6_2:71705405-71705424 None:intergenic 30.0%
! ACTGAATGATGTCGTATTTT+AGG - chr6_2:71705428-71705447 None:intergenic 30.0%
ATCAGTACTCAAAGTTCAAA+TGG + chr6_2:71705686-71705705 Msa0927380:intron 30.0%
ACTATATATACCTCTCTTTC+TGG + chr6_2:71706576-71706595 Msa0927380:intron 30.0%
GTGAGTACAAAAATCAACTA+CGG - chr6_2:71706648-71706667 None:intergenic 30.0%
! TTCTTCTTCAATTTAGGGTT+AGG + chr6_2:71706733-71706752 Msa0927380:intron 30.0%
! TCTTCTTCAATTTAGGGTTA+GGG + chr6_2:71706734-71706753 Msa0927380:intron 30.0%
! CCTTTTGCCATAATTATATG+TGG - chr6_2:71701641-71701660 None:intergenic 30.0%
CCACATATAATTATGGCAAA+AGG + chr6_2:71701638-71701657 Msa0927380:intron 30.0%
!!! AATATAAGTTTGCCGGTTTT+TGG - chr6_2:71706929-71706948 None:intergenic 30.0%
AAAAAATGATACAGATCACC+AGG + chr6_2:71706949-71706968 Msa0927380:intron 30.0%
! TGAAATTCTGGAAATAAGGA+AGG + chr6_2:71707374-71707393 Msa0927380:CDS 30.0%
GAAAAAAAGCAAGGAAAAGA+AGG + chr6_2:71707473-71707492 Msa0927380:CDS 30.0%
CTAAAAAAGTTTGTGAGGAA+GGG + chr6_2:71707556-71707575 Msa0927380:CDS 30.0%
TAAAAAAGTTTGTGAGGAAG+GGG + chr6_2:71707557-71707576 Msa0927380:CDS 30.0%
CAAAGTAAAACTGAGTTGCA+AGG - chr6_2:71700889-71700908 None:intergenic 35.0%
! CTTGCAACTCAGTTTTACTT+TGG + chr6_2:71700887-71700906 Msa0927380:CDS 35.0%
AAAATACAAGTCTTCACCAG+GGG - chr6_2:71700996-71701015 None:intergenic 35.0%
TCAAAGGTTCAAAGCTACAA+GGG + chr6_2:71701035-71701054 Msa0927380:intron 35.0%
ATTAAAAGGAGGAGAAGACA+CGG - chr6_2:71701155-71701174 None:intergenic 35.0%
! AGTGCATGGATTTGATTTAG+AGG + chr6_2:71701226-71701245 Msa0927380:intron 35.0%
! GTGCATGGATTTGATTTAGA+GGG + chr6_2:71701227-71701246 Msa0927380:intron 35.0%
ATATACCTCTATTGCCAGTT+AGG + chr6_2:71701267-71701286 Msa0927380:intron 35.0%
TATACCTCTATTGCCAGTTA+GGG + chr6_2:71701268-71701287 Msa0927380:intron 35.0%
GTGAGTGCAAAAATGAACTA+CGG - chr6_2:71701334-71701353 None:intergenic 35.0%
AATGCTTCTTCTCTAGTCTA+GGG + chr6_2:71701500-71701519 Msa0927380:intron 35.0%
TCAGTCATTTGTGGAAGATT+GGG - chr6_2:71701577-71701596 None:intergenic 35.0%
AGAAATCTAAGCCAACTACT+TGG + chr6_2:71701602-71701621 Msa0927380:CDS 35.0%
GAAATCTAAGCCAACTACTT+GGG + chr6_2:71701603-71701622 Msa0927380:CDS 35.0%
TCAGGACCCACATATAATTA+TGG + chr6_2:71701631-71701650 Msa0927380:intron 35.0%
AATTATGGCAAAAGGAGATC+TGG + chr6_2:71701646-71701665 Msa0927380:intron 35.0%
ATTATGGCAAAAGGAGATCT+GGG + chr6_2:71701647-71701666 Msa0927380:intron 35.0%
AAAAAGTGATAGAGATCACC+AGG + chr6_2:71701693-71701712 Msa0927380:intron 35.0%
ACGATCAAAAAAATCATGCC+TGG - chr6_2:71701714-71701733 None:intergenic 35.0%
TCGTGATTTAAATCAGCATC+AGG - chr6_2:71701879-71701898 None:intergenic 35.0%
!! TGATGCTGATTTAAATCACG+AGG + chr6_2:71701878-71701897 Msa0927380:intron 35.0%
TATTTATGCTGAAAACTGCG+TGG + chr6_2:71702013-71702032 Msa0927380:CDS 35.0%
! TCGAAGTTCTTTACGGTTTT+TGG - chr6_2:71702070-71702089 None:intergenic 35.0%
AAAACCGTAAAGAACTTCGA+AGG + chr6_2:71702070-71702089 Msa0927380:CDS 35.0%
GATTGAAGAGGAAAACAAGA+AGG - chr6_2:71702163-71702182 None:intergenic 35.0%
AGAATAATGTTGTCGGATTC+AGG + chr6_2:71702226-71702245 Msa0927380:intron 35.0%
GAATAATGTTGTCGGATTCA+GGG + chr6_2:71702227-71702246 Msa0927380:intron 35.0%
AATAATGTTGTCGGATTCAG+GGG + chr6_2:71702228-71702247 Msa0927380:intron 35.0%
! TTTTAGGCTTCAATTTCTGC+TGG - chr6_2:71702550-71702569 None:intergenic 35.0%
AAATTTAAAGAACTTGCCGC+GGG - chr6_2:71702632-71702651 None:intergenic 35.0%
!! CTGCTTTTCAATTTCATCCA+GGG - chr6_2:71702754-71702773 None:intergenic 35.0%
!! TCTGCTTTTCAATTTCATCC+AGG - chr6_2:71702755-71702774 None:intergenic 35.0%
AGATGAAAAAGCTGCATCTA+AGG + chr6_2:71702842-71702861 Msa0927380:CDS 35.0%
TCTCTAACACTCACAACTTA+AGG - chr6_2:71703053-71703072 None:intergenic 35.0%
!! AAATTGTGTGGTTCGGATTT+TGG + chr6_2:71703216-71703235 Msa0927380:intron 35.0%
!! AATTGTGTGGTTCGGATTTT+GGG + chr6_2:71703217-71703236 Msa0927380:intron 35.0%
!!! ATATAATCCGAAGGGTGTTT+TGG + chr6_2:71703364-71703383 Msa0927380:intron 35.0%
!!! TATAATCCGAAGGGTGTTTT+GGG + chr6_2:71703365-71703384 Msa0927380:intron 35.0%
! AATTTTCCCAAAACACCCTT+CGG - chr6_2:71703374-71703393 None:intergenic 35.0%
!!! GTGTTTTGGGAAAATTTGCA+TGG + chr6_2:71703378-71703397 Msa0927380:intron 35.0%
! GAGTGACAAGTTTCGATTTT+TGG + chr6_2:71703469-71703488 Msa0927380:intron 35.0%
!! ATTCATGGCTTGCTAATTCT+TGG + chr6_2:71703558-71703577 Msa0927380:intron 35.0%
GGGAAATCATACAGAATTGT+TGG - chr6_2:71703684-71703703 None:intergenic 35.0%
! TAAAATGCAGCATTGGAAGA+TGG + chr6_2:71703819-71703838 Msa0927380:intron 35.0%
AGTGAAGAATTTACATGTGG+TGG + chr6_2:71703990-71704009 Msa0927380:intron 35.0%
! TGTACATTCATTTTCTCCCT+TGG + chr6_2:71704019-71704038 Msa0927380:intron 35.0%
CTTGAACACTCAATTCTAAG+GGG - chr6_2:71704131-71704150 None:intergenic 35.0%
CCTTGAACACTCAATTCTAA+GGG - chr6_2:71704132-71704151 None:intergenic 35.0%
CCTTAGAATTGAGTGTTCAA+GGG + chr6_2:71704130-71704149 Msa0927380:intron 35.0%
CTTAGAATTGAGTGTTCAAG+GGG + chr6_2:71704131-71704150 Msa0927380:intron 35.0%
TGATGTTGTGTCAAATAACG+AGG + chr6_2:71704200-71704219 Msa0927380:intron 35.0%
AGGTTTCAAAAAGTGGTGTT+TGG + chr6_2:71704220-71704239 Msa0927380:intron 35.0%
GGTTTCAAAAAGTGGTGTTT+GGG + chr6_2:71704221-71704240 Msa0927380:intron 35.0%
! GTGCTCTGGATATAAATATC+AGG + chr6_2:71704265-71704284 Msa0927380:intron 35.0%
! TATCAGGACGATTTTACTCA+AGG + chr6_2:71704281-71704300 Msa0927380:intron 35.0%
! ATCAGGACGATTTTACTCAA+GGG + chr6_2:71704282-71704301 Msa0927380:intron 35.0%
ATAAATGGGACAAGTAAAGG+TGG + chr6_2:71704323-71704342 Msa0927380:intron 35.0%
TAAATGGGACAAGTAAAGGT+GGG + chr6_2:71704324-71704343 Msa0927380:intron 35.0%
AAAAACACAAACTCGTGTAC+TGG - chr6_2:71704445-71704464 None:intergenic 35.0%
TGGTGCATAATATTCCATCT+TGG - chr6_2:71704638-71704657 None:intergenic 35.0%
ATGGAATATTATGCACCAAC+AGG + chr6_2:71704640-71704659 Msa0927380:intron 35.0%
AGTAAGTGCCTAAAATGTGT+AGG - chr6_2:71704760-71704779 None:intergenic 35.0%
! CTGGAAAAAATGTTGATAGG+AGG - chr6_2:71704786-71704805 None:intergenic 35.0%
!!! CTCCTATCAACATTTTTTCC+AGG + chr6_2:71704784-71704803 Msa0927380:intron 35.0%
TTCTACATTTCATTCCCAGT+TGG - chr6_2:71704846-71704865 None:intergenic 35.0%
!!! CTTTTTGGAGTTATCAACCA+CGG + chr6_2:71704915-71704934 Msa0927380:intron 35.0%
! TTCAATTTGGTTCAAATGCC+AGG + chr6_2:71705107-71705126 Msa0927380:intron 35.0%
ATTCCATAGCAGTAATTTCC+TGG - chr6_2:71705128-71705147 None:intergenic 35.0%
AGGAAATTACTGCTATGGAA+TGG + chr6_2:71705127-71705146 Msa0927380:intron 35.0%
GATATTCAACATGCTTATGG+TGG - chr6_2:71705402-71705421 None:intergenic 35.0%
AGTAGTGCATAGTCATACAT+TGG - chr6_2:71705466-71705485 None:intergenic 35.0%
CTCAAGTTAGTATGTGTTCA+AGG - chr6_2:71705505-71705524 None:intergenic 35.0%
! AATCTAGAGCAATAGCAGAT+TGG - chr6_2:71705594-71705613 None:intergenic 35.0%
!! GAACTTTGAGTACTGATAAG+TGG - chr6_2:71705683-71705702 None:intergenic 35.0%
ATAACCAACGACTACATGTT+AGG + chr6_2:71705852-71705871 Msa0927380:intron 35.0%
AGCTAGAATTGTGTAAGTTG+CGG + chr6_2:71706064-71706083 Msa0927380:intron 35.0%
GAGCTTGTAATTTGGCATTA+CGG + chr6_2:71706290-71706309 Msa0927380:intron 35.0%
AGCTTGTAATTTGGCATTAC+GGG + chr6_2:71706291-71706310 Msa0927380:intron 35.0%
!! ATATACCTCTCTTTCTGGTT+AGG + chr6_2:71706581-71706600 Msa0927380:intron 35.0%
!! TATACCTCTCTTTCTGGTTA+GGG + chr6_2:71706582-71706601 Msa0927380:intron 35.0%
! TTTTGTACTCACTCATCAGA+AGG + chr6_2:71706656-71706675 Msa0927380:intron 35.0%
TCAGTCATTTGTGGAAGATT+GGG - chr6_2:71701577-71701596 None:intergenic 35.0%
AGAAATCTAAGCCAACTACT+TGG + chr6_2:71701602-71701621 Msa0927380:CDS 35.0%
GAAATCTAAGCCAACTACTT+GGG + chr6_2:71701603-71701622 Msa0927380:CDS 35.0%
TCAGGACCCACATATAATTA+TGG + chr6_2:71701631-71701650 Msa0927380:intron 35.0%
AATTATGGCAAAAGGAGATC+TGG + chr6_2:71701646-71701665 Msa0927380:intron 35.0%
ATTATGGCAAAAGGAGATCT+GGG + chr6_2:71701647-71701666 Msa0927380:intron 35.0%
ACGATCAAAAAAATCATGCC+TGG - chr6_2:71701714-71701733 None:intergenic 35.0%
AGGAATCAAAAAACTTCTGC+AGG - chr6_2:71707068-71707087 None:intergenic 35.0%
TCGTGATTTAAATCAGCATC+AGG - chr6_2:71701879-71701898 None:intergenic 35.0%
!! TGATGCTGATTTAAATCACG+AGG + chr6_2:71701878-71701897 Msa0927380:intron 35.0%
! TCGAAGTTCTTTACGGTTTT+CGG - chr6_2:71702070-71702089 None:intergenic 35.0%
AAAACCGTAAAGAACTTCGA+AGG + chr6_2:71702070-71702089 Msa0927380:CDS 35.0%
TCTGGAAATAAGGAAGGAAA+AGG + chr6_2:71707380-71707399 Msa0927380:CDS 35.0%
TGAAATGAAAAGGAAGGAAG+AGG + chr6_2:71707410-71707429 Msa0927380:CDS 35.0%
AGCAGCTAAAAAAGTTTGTG+AGG + chr6_2:71707551-71707570 Msa0927380:CDS 35.0%
GCTAAAAAAGTTTGTGAGGA+AGG + chr6_2:71707555-71707574 Msa0927380:CDS 35.0%
! GTCCAAAGGTCGATTCATAA+CGG + chr6_2:71700838-71700857 Msa0927380:CDS 40.0%
!! TACTTTGGCGTTGCTACTTT+CGG + chr6_2:71700902-71700921 Msa0927380:CDS 40.0%
!! CAAATACGTCGAGTTGATGA+AGG - chr6_2:71700952-71700971 None:intergenic 40.0%
! GTTTTATCCATATTTGCCCC+TGG + chr6_2:71700977-71700996 Msa0927380:intron 40.0%
CTCAAAGGTTCAAAGCTACA+AGG + chr6_2:71701034-71701053 Msa0927380:intron 40.0%
! CATGGATTTGATTTAGAGGG+AGG + chr6_2:71701230-71701249 Msa0927380:intron 40.0%
CATAATTGACGAACCCTAAC+TGG - chr6_2:71701284-71701303 None:intergenic 40.0%
TGAACTACGGAGACGAAAAT+CGG - chr6_2:71701321-71701340 None:intergenic 40.0%
! TTTTGCACTCACTCATCACA+AGG + chr6_2:71701342-71701361 Msa0927380:intron 40.0%
!! TTGTCGGATTTTAGGGGTTT+AGG + chr6_2:71701459-71701478 Msa0927380:intron 40.0%
!! TGTCGGATTTTAGGGGTTTA+GGG + chr6_2:71701460-71701479 Msa0927380:intron 40.0%
CAATGCTTCTTCTCTAGTCT+AGG + chr6_2:71701499-71701518 Msa0927380:intron 40.0%
CAGTCATTTGTGGAAGATTG+GGG - chr6_2:71701576-71701595 None:intergenic 40.0%
GTCAGTCATTTGTGGAAGAT+TGG - chr6_2:71701578-71701597 None:intergenic 40.0%
!!! ATGAGAAGTTTGCCGGTTTT+TGG - chr6_2:71701673-71701692 None:intergenic 40.0%
AGGAATCAAGAAACTTCTGC+AGG - chr6_2:71701812-71701831 None:intergenic 40.0%
TCAGCCTTCGAAGTTCTTTA+CGG - chr6_2:71702077-71702096 None:intergenic 40.0%
TTAACCTCTAAACCAGCAGT+TGG + chr6_2:71702704-71702723 Msa0927380:intron 40.0%
GCTGAAGTTCCAAATGAAGA+AGG + chr6_2:71702867-71702886 Msa0927380:CDS 40.0%
GCAGTTGTGTAGAGTAAGAA+AGG + chr6_2:71703002-71703021 Msa0927380:intron 40.0%
AGTTGTGAGTGTTAGAGACT+TGG + chr6_2:71703055-71703074 Msa0927380:intron 40.0%
GTTGTGAGTGTTAGAGACTT+GGG + chr6_2:71703056-71703075 Msa0927380:intron 40.0%
AGATAATAACCAGACACGCA+TGG - chr6_2:71703106-71703125 None:intergenic 40.0%
!!! TGGTTCGGATTTTGGGATAA+GGG + chr6_2:71703224-71703243 Msa0927380:intron 40.0%
ATGGCGCATGAATACTTCAT+AGG + chr6_2:71703397-71703416 Msa0927380:intron 40.0%
TGGCGCATGAATACTTCATA+GGG + chr6_2:71703398-71703417 Msa0927380:intron 40.0%
GCATGAATACTTCATAGGGT+GGG + chr6_2:71703402-71703421 Msa0927380:intron 40.0%
AATTCTTGCAATTCCTGTCC+AGG + chr6_2:71703796-71703815 Msa0927380:intron 40.0%
! TTCCAATGCTGCATTTTACC+TGG - chr6_2:71703817-71703836 None:intergenic 40.0%
GAGAACAAATGCATGTCCAA+GGG - chr6_2:71704038-71704057 None:intergenic 40.0%
AGAGAACAAATGCATGTCCA+AGG - chr6_2:71704039-71704058 None:intergenic 40.0%
CCCTTAGAATTGAGTGTTCA+AGG + chr6_2:71704129-71704148 Msa0927380:intron 40.0%
CCCTTGAACACTCAATTCTA+AGG - chr6_2:71704133-71704152 None:intergenic 40.0%
AAATGGGACAAGTAAAGGTG+GGG + chr6_2:71704325-71704344 Msa0927380:intron 40.0%
!!! CATTTTTTCCAGGAAGCGAA+AGG + chr6_2:71704794-71704813 Msa0927380:intron 40.0%
! TTGGAGGGTATGTTTAGTCT+GGG + chr6_2:71704938-71704957 Msa0927380:intron 40.0%
GGACACAATAGACAAAACCA+CGG + chr6_2:71704960-71704979 Msa0927380:intron 40.0%
TGTACTCTGAATGTTTGGTC+TGG - chr6_2:71705082-71705101 None:intergenic 40.0%
ATGCCAGGAAATTACTGCTA+TGG + chr6_2:71705122-71705141 Msa0927380:intron 40.0%
GTATCCTAACATGTAGTCGT+TGG - chr6_2:71705859-71705878 None:intergenic 40.0%
TTTAACTGGAAAGTCAAGCG+AGG + chr6_2:71705969-71705988 Msa0927380:intron 40.0%
! GTCCAAAGGTCGATTCATAA+CGG + chr6_2:71700838-71700857 Msa0927380:CDS 40.0%
ATCAACCACAAGGATCTGAT+TGG + chr6_2:71706240-71706259 Msa0927380:intron 40.0%
CAGCACTTGAGCTTGTAATT+TGG + chr6_2:71706282-71706301 Msa0927380:intron 40.0%
GGTTACACCTCTTCCTTTAA+CGG - chr6_2:71706356-71706375 None:intergenic 40.0%
TTTGGATGTGCTCGATTTCA+AGG - chr6_2:71706377-71706396 None:intergenic 40.0%
! ACATCCAAAGACAAGTGTTG+TGG + chr6_2:71706388-71706407 Msa0927380:intron 40.0%
CATACCACAACACTTGTCTT+TGG - chr6_2:71706395-71706414 None:intergenic 40.0%
AGTCATTTGTGGAAGATTGG+GGG - chr6_2:71701575-71701594 None:intergenic 40.0%
CAGTCATTTGTGGAAGATTG+GGG - chr6_2:71701576-71701595 None:intergenic 40.0%
GTCAGTCATTTGTGGAAGAT+TGG - chr6_2:71701578-71701597 None:intergenic 40.0%
!! CTAAACAACTGCTGGTTTAG+AGG - chr6_2:71707252-71707271 None:intergenic 40.0%
CTCTAAACCAGCAGTTGTTT+AGG + chr6_2:71707250-71707269 Msa0927380:CDS 40.0%
! TTTTCAGCCTAAACAACTGC+TGG - chr6_2:71707260-71707279 None:intergenic 40.0%
TCAGCCTTCGAAGTTCTTTA+CGG - chr6_2:71702077-71702096 None:intergenic 40.0%
GGAAATAAGGAAGGAAAAGG+AGG + chr6_2:71707383-71707402 Msa0927380:CDS 40.0%
AGGAGGAAGCTGAAATGAAA+AGG + chr6_2:71707400-71707419 Msa0927380:CDS 40.0%
GGAAGCTGAAATGAAAAGGA+AGG + chr6_2:71707404-71707423 Msa0927380:CDS 40.0%
AATGAAAAGGAAGGAAGAGG+AGG + chr6_2:71707413-71707432 Msa0927380:CDS 40.0%
CTCCGTTATGAATCGACCTT+TGG - chr6_2:71700843-71700862 None:intergenic 45.0%
! GGTCGATTCATAACGGAGAA+AGG + chr6_2:71700845-71700864 Msa0927380:CDS 45.0%
GCAAGGCGTATTACTATCTG+AGG - chr6_2:71700872-71700891 None:intergenic 45.0%
AAGGTTCAAAGCTACAAGGG+AGG + chr6_2:71701038-71701057 Msa0927380:intron 45.0%
TCTTCCACAAATGACTGACG+AGG + chr6_2:71701579-71701598 Msa0927380:CDS 45.0%
TTCTCCTCGTCAGTCATTTG+TGG - chr6_2:71701586-71701605 None:intergenic 45.0%
ATGCTGAAAACTGCGTGGTT+TGG + chr6_2:71702018-71702037 Msa0927380:CDS 45.0%
! AAAACTGCGTGGTTTGGCAA+GGG + chr6_2:71702024-71702043 Msa0927380:CDS 45.0%
TTGTCGGATTCAGGGGTTTA+GGG + chr6_2:71702235-71702254 Msa0927380:intron 45.0%
ATGTGGCAGTTAAACTGCAG+AGG - chr6_2:71702316-71702335 None:intergenic 45.0%
!!! CCATTTGCGGTTTTGAGATG+TGG - chr6_2:71702333-71702352 None:intergenic 45.0%
CCACATCTCAAAACCGCAAA+TGG + chr6_2:71702330-71702349 Msa0927380:intron 45.0%
CAATCACACTGCAAACAGGA+GGG - chr6_2:71702384-71702403 None:intergenic 45.0%
TCAATCACACTGCAAACAGG+AGG - chr6_2:71702385-71702404 None:intergenic 45.0%
TCGTCAATCACACTGCAAAC+AGG - chr6_2:71702388-71702407 None:intergenic 45.0%
TGTGTCTGATTTACAACCCG+CGG + chr6_2:71702613-71702632 Msa0927380:intron 45.0%
!! AACTCCAACTGCTGGTTTAG+AGG - chr6_2:71702711-71702730 None:intergenic 45.0%
CATACAACAACTCCAACTGC+TGG - chr6_2:71702719-71702738 None:intergenic 45.0%
!! GCTGATTTTAAAAGGGCTGC+AGG + chr6_2:71702780-71702799 Msa0927380:CDS 45.0%
CTTAAGCTTCATTCTCCTGC+TGG - chr6_2:71702920-71702939 None:intergenic 45.0%
ATGGACAAGATTTGCGAGCT+TGG - chr6_2:71703087-71703106 None:intergenic 45.0%
AAATCTTGTCCATGCGTGTC+TGG + chr6_2:71703094-71703113 Msa0927380:intron 45.0%
!!! GTGGTTCGGATTTTGGGATA+AGG + chr6_2:71703223-71703242 Msa0927380:intron 45.0%
CGCATGAATACTTCATAGGG+TGG + chr6_2:71703401-71703420 Msa0927380:intron 45.0%
GGACTTAGATCTGCTGTTGT+AGG + chr6_2:71703656-71703675 Msa0927380:intron 45.0%
! ATGCTGCATTTTACCTGGAC+AGG - chr6_2:71703812-71703831 None:intergenic 45.0%
GTCCAGGTAAAATGCAGCAT+TGG + chr6_2:71703812-71703831 Msa0927380:intron 45.0%
!! AGTGGTGTTTGGGCTGTTTT+AGG + chr6_2:71704231-71704250 Msa0927380:intron 45.0%
!! GCTGTTTTAGGCACTGCAAT+TGG + chr6_2:71704243-71704262 Msa0927380:intron 45.0%
! AGGACGATTTTACTCAAGGG+TGG + chr6_2:71704285-71704304 Msa0927380:intron 45.0%
TTGGAGTTATCAACCACGGT+TGG + chr6_2:71704919-71704938 Msa0927380:intron 45.0%
AGTTATCAACCACGGTTGGA+GGG + chr6_2:71704923-71704942 Msa0927380:intron 45.0%
! GTTGGAGGGTATGTTTAGTC+TGG + chr6_2:71704937-71704956 Msa0927380:intron 45.0%
! TGGAGGGTATGTTTAGTCTG+GGG + chr6_2:71704939-71704958 Msa0927380:intron 45.0%
AAAACCACGGCAAAAACCCA+CGG + chr6_2:71704973-71704992 Msa0927380:intron 45.0%
AATGTTTGGTCTGGCGTTTG+AGG - chr6_2:71705073-71705092 None:intergenic 45.0%
! GAGCGTCAAAGTGTTTGTCA+TGG + chr6_2:71705522-71705541 Msa0927380:intron 45.0%
CGATACTCGATAGTCGTGTT+TGG - chr6_2:71705555-71705574 None:intergenic 45.0%
CTAGAGCAATAGCAGATTGG+TGG - chr6_2:71705591-71705610 None:intergenic 45.0%
CTCCGTTATGAATCGACCTT+TGG - chr6_2:71700843-71700862 None:intergenic 45.0%
! GGTCGATTCATAACGGAGAA+AGG + chr6_2:71700845-71700864 Msa0927380:CDS 45.0%
! TCATAACGGAGAAAGGACCT+CGG + chr6_2:71700852-71700871 Msa0927380:CDS 45.0%
! ATTCTAGCTGCTACTATCCG+AGG - chr6_2:71706053-71706072 None:intergenic 45.0%
TTTGTGTCACGTTCGCAACA+AGG + chr6_2:71706123-71706142 Msa0927380:intron 45.0%
TACGCATGCGACAACTGTAT+CGG - chr6_2:71706171-71706190 None:intergenic 45.0%
AGTTGTCGCATGCGTATTTC+AGG + chr6_2:71706175-71706194 Msa0927380:intron 45.0%
GTTGTCGCATGCGTATTTCA+GGG + chr6_2:71706176-71706195 Msa0927380:intron 45.0%
TTGTCGCATGCGTATTTCAG+GGG + chr6_2:71706177-71706196 Msa0927380:intron 45.0%
ACCACAAGGATCTGATTGGT+AGG + chr6_2:71706244-71706263 Msa0927380:intron 45.0%
CCACAAGGATCTGATTGGTA+GGG + chr6_2:71706245-71706264 Msa0927380:intron 45.0%
ACCTGAAGCAAAGCCGTTAA+AGG + chr6_2:71706340-71706359 Msa0927380:intron 45.0%
TCCTTTAACGGCTTTGCTTC+AGG - chr6_2:71706344-71706363 None:intergenic 45.0%
AGCAAAGCCGTTAAAGGAAG+AGG + chr6_2:71706346-71706365 Msa0927380:intron 45.0%
TCTTCCACAAATGACTGACG+AGG + chr6_2:71701579-71701598 Msa0927380:CDS 45.0%
TTCTCCTCGTCAGTCATTTG+TGG - chr6_2:71701586-71701605 None:intergenic 45.0%
TGTTTAGGCTGAAAACTGCG+TGG + chr6_2:71707265-71707284 Msa0927380:CDS 45.0%
! AAAACTGCGTGGTTTGGCAA+AGG + chr6_2:71702024-71702043 Msa0927380:CDS 45.0%
GGAAGCTGAAAGGAAGGAAA+AGG + chr6_2:71707434-71707453 Msa0927380:CDS 45.0%
AGCTGAAAGGAAGGAAAAGG+AGG + chr6_2:71707437-71707456 Msa0927380:CDS 45.0%
!! AGAAAATAAATAATATTAAA+GGG - chr6_2:71701786-71701805 None:intergenic 5.0%
!! TAGAAAATAAATAATATTAA+AGG - chr6_2:71701787-71701806 None:intergenic 5.0%
!! AAAATAAATAACAAATAAAA+TGG - chr6_2:71703937-71703956 None:intergenic 5.0%
!! AGAAAATAAATAATATTAAA+GGG - chr6_2:71701786-71701805 None:intergenic 5.0%
!! TAGAAAATAAATAATATTAA+AGG - chr6_2:71701787-71701806 None:intergenic 5.0%
GTCTTCACCAGGGGCAAATA+TGG - chr6_2:71700987-71701006 None:intergenic 50.0%
GAGGAGAAGACACGGTTCTT+TGG - chr6_2:71701147-71701166 None:intergenic 50.0%
CGAACCCTAACTGGCAATAG+AGG - chr6_2:71701275-71701294 None:intergenic 50.0%
GGAAGAGAGTTAAGCTGCAG+AGG - chr6_2:71701555-71701574 None:intergenic 50.0%
CCTGAGATGACCCAAGTAGT+TGG - chr6_2:71701616-71701635 None:intergenic 50.0%
CCAACTACTTGGGTCATCTC+AGG + chr6_2:71701613-71701632 Msa0927380:intron 50.0%
AGGAGATCTGGGCCAAAAAC+CGG + chr6_2:71701658-71701677 Msa0927380:intron 50.0%
! GAAAACTGCGTGGTTTGGCA+AGG + chr6_2:71702023-71702042 Msa0927380:CDS 50.0%
GTTGTCGGATTCAGGGGTTT+AGG + chr6_2:71702234-71702253 Msa0927380:intron 50.0%
AAACAGGAGGGAAGTGGAAG+TGG - chr6_2:71702372-71702391 None:intergenic 50.0%
CGAACTTTCTGCAGAACCCA+AGG + chr6_2:71702405-71702424 Msa0927380:intron 50.0%
TGGAGTTGTTGTATGCAGCG+CGG + chr6_2:71702724-71702743 Msa0927380:intron 50.0%
AGCTGAAGTTCCAAACCAGC+AGG + chr6_2:71702902-71702921 Msa0927380:intron 50.0%
! GCTTCATTCTCCTGCTGGTT+TGG - chr6_2:71702915-71702934 None:intergenic 50.0%
GGCTAATGCAGTCTCCAAGA+TGG + chr6_2:71704621-71704640 Msa0927380:intron 50.0%
TTCTCGAACCTTTCGCTTCC+TGG - chr6_2:71704805-71704824 None:intergenic 50.0%
GAGTTATCAACCACGGTTGG+AGG + chr6_2:71704922-71704941 Msa0927380:intron 50.0%
CTAAACATACCCTCCAACCG+TGG - chr6_2:71704935-71704954 None:intergenic 50.0%
CAACAAGGTTCCTTCACACC+AGG + chr6_2:71706138-71706157 Msa0927380:intron 50.0%
AAGGTTCCTTCACACCAGGT+GGG + chr6_2:71706142-71706161 Msa0927380:intron 50.0%
AACTGTATCGGATTCCCACC+TGG - chr6_2:71706159-71706178 None:intergenic 50.0%
CGTATTTCAGGGGCGATTTC+TGG + chr6_2:71706187-71706206 Msa0927380:intron 50.0%
GAGCAGGCAAATCAACCACA+AGG + chr6_2:71706230-71706249 Msa0927380:intron 50.0%
CCCTACCAATCAGATCCTTG+TGG - chr6_2:71706248-71706267 None:intergenic 50.0%
CGAACCCTAACCAGAAAGAG+AGG - chr6_2:71706589-71706608 None:intergenic 50.0%
CCTGAGATGACCCAAGTAGT+TGG - chr6_2:71701616-71701635 None:intergenic 50.0%
CCAACTACTTGGGTCATCTC+AGG + chr6_2:71701613-71701632 Msa0927380:intron 50.0%
AGGAGATCTGGGCCAAAAAC+CGG + chr6_2:71701658-71701677 Msa0927380:intron 50.0%
AGGCTGAAAACTGCGTGGTT+TGG + chr6_2:71707270-71707289 Msa0927380:CDS 50.0%
AGGAAGAGGAGGAAGCTGAA+AGG + chr6_2:71707424-71707443 Msa0927380:CDS 50.0%
AGAGGAGGAAGCTGAAAGGA+AGG + chr6_2:71707428-71707447 Msa0927380:CDS 50.0%
AAACCGCAAATGGCTCCACC+CGG + chr6_2:71702340-71702359 Msa0927380:intron 55.0%
CACTGCAAACAGGAGGGAAG+TGG - chr6_2:71702378-71702397 None:intergenic 55.0%
! AGGCACTGCAATTGGTGCTC+TGG + chr6_2:71704251-71704270 Msa0927380:intron 55.0%
GCAAAAACCCACGGTAGGTG+AGG + chr6_2:71704982-71705001 Msa0927380:intron 55.0%
AAAACCCACGGTAGGTGAGG+TGG + chr6_2:71704985-71705004 Msa0927380:intron 55.0%
ACTTCCACCTCACCTACCGT+GGG - chr6_2:71704992-71705011 None:intergenic 55.0%
AACTTCCACCTCACCTACCG+TGG - chr6_2:71704993-71705012 None:intergenic 55.0%
CAAGGTTCCTTCACACCAGG+TGG + chr6_2:71706141-71706160 Msa0927380:intron 55.0%
AAGCCGGGTGGAGCCATTTG+CGG - chr6_2:71702346-71702365 None:intergenic 60.0%
! AAGTGGAAGTGGCGGAAGCC+GGG - chr6_2:71702361-71702380 None:intergenic 60.0%
! GAAGTGGAAGTGGCGGAAGC+CGG - chr6_2:71702362-71702381 None:intergenic 60.0%
CAGGAGGGAAGTGGAAGTGG+CGG - chr6_2:71702369-71702388 None:intergenic 60.0%
! CCTACCGTGGGTTTTTGCCG+TGG - chr6_2:71704980-71704999 None:intergenic 60.0%
CCACGGCAAAAACCCACGGT+AGG + chr6_2:71704977-71704996 Msa0927380:intron 60.0%
CGGATTCCCACCTGGTGTGA+AGG - chr6_2:71706151-71706170 None:intergenic 60.0%
TTGGGGGAGAGAGCTGCAGA+GGG - chr6_2:71706815-71706834 None:intergenic 60.0%
ATTGGGGGAGAGAGCTGCAG+AGG - chr6_2:71706816-71706835 None:intergenic 60.0%
!! GGGGCGATTTCTGGTGCCAG+CGG + chr6_2:71706196-71706215 Msa0927380:intron 65.0%
!! GGGCGATTTCTGGTGCCAGC+GGG + chr6_2:71706197-71706216 Msa0927380:intron 65.0%
!! GGCGATTTCTGGTGCCAGCG+GGG + chr6_2:71706198-71706217 Msa0927380:intron 65.0%
! TTTCTGGTGCCAGCGGGGCT+TGG + chr6_2:71706203-71706222 Msa0927380:intron 65.0%
! TTCTGGTGCCAGCGGGGCTT+GGG + chr6_2:71706204-71706223 Msa0927380:intron 65.0%
! TGGAAGTGGCGGAAGCCGGG+TGG - chr6_2:71702358-71702377 None:intergenic 70.0%
! GTATGCAGCGCGGACTGCCC+TGG + chr6_2:71702734-71702753 Msa0927380:intron 70.0%
TGCTCCTTCCCAAGCCCCGC+TGG - chr6_2:71706215-71706234 None:intergenic 70.0%
AGCGGGGCTTGGGAAGGAGC+AGG + chr6_2:71706214-71706233 Msa0927380:intron 70.0%
GGTGCCAGCGGGGCTTGGGA+AGG + chr6_2:71706208-71706227 Msa0927380:intron 75.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 71700836 71707593 71700836 ID=Msa0927380;Name=Msa0927380
chr6_2 mRNA 71700836 71707593 71700836 ID=Msa0927380-mRNA-1;Parent=Msa0927380;Name=Msa0927380-mRNA-1;_AED=0.24;_eAED=0.32;_QI=0|0|0|0.85|0.16|0.14|7|0|338
chr6_2 exon 71700836 71700923 71700836 ID=Msa0927380-mRNA-1:exon:11990;Parent=Msa0927380-mRNA-1
chr6_2 exon 71701521 71701624 71701521 ID=Msa0927380-mRNA-1:exon:11991;Parent=Msa0927380-mRNA-1
chr6_2 exon 71701816 71701854 71701816 ID=Msa0927380-mRNA-1:exon:11992;Parent=Msa0927380-mRNA-1
chr6_2 exon 71702012 71702123 71702012 ID=Msa0927380-mRNA-1:exon:11993;Parent=Msa0927380-mRNA-1
chr6_2 exon 71702742 71702908 71702742 ID=Msa0927380-mRNA-1:exon:11994;Parent=Msa0927380-mRNA-1
chr6_2 exon 71707072 71707191 71707072 ID=Msa0927380-mRNA-1:exon:11995;Parent=Msa0927380-mRNA-1
chr6_2 exon 71707207 71707593 71707207 ID=Msa0927380-mRNA-1:exon:11996;Parent=Msa0927380-mRNA-1
chr6_2 CDS 71700836 71700923 71700836 ID=Msa0927380-mRNA-1:cds;Parent=Msa0927380-mRNA-1
chr6_2 CDS 71701521 71701624 71701521 ID=Msa0927380-mRNA-1:cds;Parent=Msa0927380-mRNA-1
chr6_2 CDS 71701816 71701854 71701816 ID=Msa0927380-mRNA-1:cds;Parent=Msa0927380-mRNA-1
chr6_2 CDS 71702012 71702123 71702012 ID=Msa0927380-mRNA-1:cds;Parent=Msa0927380-mRNA-1
chr6_2 CDS 71702742 71702908 71702742 ID=Msa0927380-mRNA-1:cds;Parent=Msa0927380-mRNA-1
chr6_2 CDS 71707072 71707191 71707072 ID=Msa0927380-mRNA-1:cds;Parent=Msa0927380-mRNA-1
chr6_2 CDS 71707207 71707593 71707207 ID=Msa0927380-mRNA-1:cds;Parent=Msa0927380-mRNA-1
Gene Sequence

>Msa0927380

ATGTCCAAAGGTCGATTCATAACGGAGAAAGGACCTCAGATAGTAATACGCCTTGCAACTCAGTTTTACTTTGGCGTTGCTACTTTCGGGTTTGCGATTTTCATTCGTCTTTCATTTTACCTCTGCAGCTTAACTCTCTTCCCCAATCTTCCACAAATGACTGACGAGGAGAAATCTAAGCCAACTACTTGGAAGTTTCTTGATTCCTATTATGATGAAGTGATTGAAGACTTATTTATGCTGAAAACTGCGTGGTTTGGCAAGGGTCATTATAGAGATTATGTTGCCAAAAACCGTAAAGAACTTCGAAGGCTGAAAAAGCAAATTAAAAAACATGAGGTTCCGCGGACTGCCCTGGATGAAATTGAAAAGCAGAAAGAAGCTGATTTTAAAAGGGCTGCAGGTGAAATTAAGAAACTGAGAGTTCAAATTCAAAAGAAGATAGATGAAAAAGCTGCATCTAAGGCAGCTGAAGTTCCAAATGAAGAAGGTACATCTAAGGCAGCTGAAAAGTTTTTTGATTCCTTTTATGATGAAGTGATTGAAGATGTTCGTAGTTGCATGAATAAGCCTGATGCTGATTTAAATCACGAGGCAAGTTTTTCTCGAAGAACAATGTTTTTGATTCAATTTCTTTGTTCATATTTGAGTTCTTTAATATTCATTAATTATCCTCTAAACCAGCAGTTGTTTAGGCTGAAAACTGCGTGGTTTGGCAAAGGTCATTATAGAGATTATGTTGCCGAAAACCGTAAAGAACTTCGAAGGCTGAAAAAGCAAATTAAAAAAAAGGAAGTTGAAATTCTGGAAATAAGGAAGGAAAAGGAGGAAGCTGAAATGAAAAGGAAGGAAGAGGAGGAAGCTGAAAGGAAGGAAAAGGAGGAAGCTGAAATTCTGAAAAAAAGCAAGGAAAAGAAGGAAGCTAAAATTCAGAAAAAGAAAATGAAAAAGAAGGAAGCTAAAATTCGAAAGCAAGCAGCTAAAAAAGTTTGTGAGGAAGGGGCTAAAGCATGTTAA

Protein sequence

>Msa0927380

MSKGRFITEKGPQIVIRLATQFYFGVATFGFAIFIRLSFYLCSLTLFPNLPQMTDEEKSKPTTWKFLDSYYDEVIEDLFMLKTAWFGKGHYRDYVAKNRKELRRLKKQIKKHEVPRTALDEIEKQKEADFKRAAGEIKKLRVQIQKKIDEKAASKAAEVPNEEGTSKAAEKFFDSFYDEVIEDVRSCMNKPDADLNHEASFSRRTMFLIQFLCSYLSSLIFINYPLNQQLFRLKTAWFGKGHYRDYVAENRKELRRLKKQIKKKEVEILEIRKEKEEAEMKRKEEEEAERKEKEEAEILKKSKEKKEAKIQKKKMKKKEAKIRKQAAKKVCEEGAKAC*