Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899660 | XP_013453101.2 | 97.847 | 418 | 9 | 0 | 1 | 418 | 3 | 420 | 0.0 | 845 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899660 | sp|Q9SVQ1|YUC2_ARATH | 65.271 | 406 | 136 | 3 | 1 | 406 | 1 | 401 | 0.0 | 560 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899660 | A0A396HLY7 | 97.847 | 418 | 9 | 0 | 1 | 418 | 3 | 420 | 0.0 | 845 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0899660 | Msa0927210 | 0.936083 | 3.059049e-97 | -8.615850e-47 |
| Msa0899660 | Msa0964700 | 0.838505 | 2.764040e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899660 | MtrunA17_Chr6g0485621 | 97.847 | 418 | 9 | 0 | 1 | 418 | 3 | 420 | 0.0 | 845 |
| Msa0899660 | MtrunA17_Chr1g0147221 | 65.238 | 420 | 131 | 3 | 3 | 411 | 4 | 419 | 0.0 | 569 |
| Msa0899660 | MtrunA17_Chr3g0139441 | 65.476 | 420 | 133 | 3 | 1 | 411 | 1 | 417 | 0.0 | 567 |
| Msa0899660 | MtrunA17_Chr1g0148801 | 60.406 | 394 | 148 | 3 | 22 | 415 | 8 | 393 | 0.0 | 514 |
| Msa0899660 | MtrunA17_Chr1g0182991 | 59.548 | 398 | 154 | 4 | 14 | 410 | 9 | 400 | 3.94e-177 | 501 |
| Msa0899660 | MtrunA17_Chr1g0169111 | 58.247 | 388 | 160 | 2 | 23 | 410 | 95 | 480 | 1.38e-175 | 499 |
| Msa0899660 | MtrunA17_Chr7g0262591 | 56.533 | 398 | 161 | 4 | 14 | 410 | 9 | 395 | 4.38e-168 | 477 |
| Msa0899660 | MtrunA17_Chr7g0262471 | 54.459 | 314 | 132 | 3 | 98 | 410 | 213 | 516 | 5.00e-121 | 362 |
| Msa0899660 | MtrunA17_Chr8g0350371 | 44.063 | 379 | 203 | 3 | 31 | 408 | 7 | 377 | 2.96e-118 | 349 |
| Msa0899660 | MtrunA17_Chr7g0268611 | 44.180 | 378 | 202 | 4 | 31 | 407 | 9 | 378 | 5.32e-118 | 349 |
| Msa0899660 | MtrunA17_Chr5g0412881 | 45.669 | 381 | 196 | 4 | 31 | 409 | 7 | 378 | 1.60e-116 | 345 |
| Msa0899660 | MtrunA17_Chr7g0268621 | 46.950 | 377 | 189 | 6 | 31 | 405 | 7 | 374 | 9.38e-116 | 343 |
| Msa0899660 | MtrunA17_Chr3g0125701 | 43.229 | 384 | 209 | 3 | 31 | 413 | 8 | 383 | 1.35e-111 | 333 |
| Msa0899660 | MtrunA17_Chr3g0125711 | 43.490 | 384 | 208 | 3 | 31 | 413 | 8 | 383 | 1.85e-111 | 333 |
| Msa0899660 | MtrunA17_Chr3g0125691 | 42.969 | 384 | 210 | 3 | 31 | 413 | 8 | 383 | 6.34e-110 | 328 |
| Msa0899660 | MtrunA17_Chr4g0025641 | 45.545 | 202 | 107 | 1 | 31 | 232 | 17 | 215 | 1.39e-59 | 194 |
| Msa0899660 | MtrunA17_Chr4g0025651 | 44.785 | 163 | 88 | 2 | 247 | 408 | 11 | 172 | 1.90e-40 | 142 |
| Msa0899660 | MtrunA17_Chr3g0129991 | 41.463 | 123 | 67 | 2 | 88 | 209 | 1 | 119 | 1.07e-26 | 103 |
| Msa0899660 | MtrunA17_Chr3g0091441 | 24.658 | 219 | 129 | 8 | 32 | 217 | 15 | 230 | 5.70e-13 | 70.5 |
| Msa0899660 | MtrunA17_Chr8g0352461 | 25.352 | 213 | 127 | 7 | 32 | 218 | 6 | 212 | 4.10e-12 | 67.8 |
| Msa0899660 | MtrunA17_Chr8g0352481 | 25.822 | 213 | 125 | 7 | 32 | 218 | 6 | 211 | 4.16e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899660 | AT4G13260.1 | 65.271 | 406 | 136 | 3 | 1 | 406 | 1 | 401 | 0.0 | 560 |
| Msa0899660 | AT5G25620.1 | 62.802 | 414 | 145 | 3 | 1 | 410 | 1 | 409 | 0.0 | 548 |
| Msa0899660 | AT5G25620.2 | 62.802 | 414 | 145 | 3 | 1 | 410 | 1 | 409 | 0.0 | 548 |
| Msa0899660 | AT5G11320.1 | 58.673 | 392 | 152 | 2 | 18 | 409 | 5 | 386 | 6.84e-176 | 497 |
| Msa0899660 | AT1G04610.1 | 58.763 | 388 | 159 | 1 | 23 | 410 | 30 | 416 | 2.17e-173 | 492 |
| Msa0899660 | AT4G32540.1 | 56.250 | 400 | 165 | 3 | 12 | 410 | 3 | 393 | 4.62e-169 | 480 |
| Msa0899660 | AT4G32540.2 | 56.219 | 402 | 164 | 4 | 12 | 410 | 3 | 395 | 1.45e-167 | 476 |
| Msa0899660 | AT5G43890.1 | 56.298 | 389 | 166 | 3 | 23 | 410 | 18 | 403 | 1.72e-166 | 474 |
| Msa0899660 | AT4G28720.1 | 54.430 | 395 | 177 | 3 | 23 | 416 | 18 | 410 | 3.70e-166 | 473 |
| Msa0899660 | AT1G04180.1 | 56.555 | 389 | 162 | 4 | 23 | 410 | 18 | 400 | 5.86e-166 | 473 |
| Msa0899660 | AT2G33230.1 | 57.990 | 388 | 161 | 1 | 23 | 410 | 25 | 410 | 3.17e-165 | 471 |
| Msa0899660 | AT5G11320.2 | 58.284 | 338 | 132 | 1 | 18 | 355 | 5 | 333 | 1.65e-149 | 428 |
| Msa0899660 | AT4G13260.2 | 61.905 | 315 | 115 | 3 | 1 | 315 | 1 | 310 | 4.44e-144 | 413 |
| Msa0899660 | AT4G13260.3 | 67.123 | 292 | 93 | 2 | 116 | 407 | 11 | 299 | 1.32e-141 | 406 |
| Msa0899660 | AT1G21430.1 | 46.579 | 380 | 189 | 6 | 31 | 407 | 10 | 378 | 4.64e-121 | 357 |
| Msa0899660 | AT1G48910.1 | 43.229 | 384 | 209 | 3 | 31 | 413 | 6 | 381 | 4.81e-117 | 347 |
| Msa0899660 | AT1G19250.1 | 23.684 | 380 | 211 | 16 | 32 | 346 | 15 | 380 | 2.73e-14 | 75.1 |
| Msa0899660 | AT5G61290.1 | 26.941 | 219 | 127 | 6 | 32 | 219 | 18 | 234 | 5.27e-14 | 73.9 |
| Msa0899660 | AT1G65860.1 | 23.744 | 219 | 126 | 6 | 32 | 218 | 15 | 224 | 3.10e-13 | 71.6 |
| Msa0899660 | AT5G45180.1 | 23.864 | 352 | 205 | 16 | 32 | 346 | 15 | 340 | 8.84e-13 | 70.1 |
| Msa0899660 | AT1G62560.2 | 22.222 | 216 | 134 | 5 | 32 | 218 | 15 | 225 | 1.73e-12 | 68.9 |
| Msa0899660 | AT1G62560.1 | 22.222 | 216 | 134 | 5 | 32 | 218 | 15 | 225 | 1.84e-12 | 69.3 |
Find 86 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCTATGTGGTTGCTTAAA+TGG | 0.146621 | 6_1:+94976025 | Msa0899660:CDS |
| ATCTTGCCACAACAAATATT+TGG | 0.151089 | 6_1:+94975985 | Msa0899660:CDS |
| TTGATGTTGTTTGTGGATTT+TGG | 0.180380 | 6_1:+94973696 | Msa0899660:CDS |
| TTATTGAATATTTATGTAAA+TGG | 0.192064 | 6_1:+94973762 | Msa0899660:CDS |
| CTTGGAGATACATCTCAATT+TGG | 0.240393 | 6_1:+94976099 | Msa0899660:CDS |
| GTAAAATCAATATTGGTTTC+AGG | 0.248308 | 6_1:+94973374 | Msa0899660:CDS |
| CTAATGTCAGATCTTATTCT+TGG | 0.255630 | 6_1:+94976081 | Msa0899660:CDS |
| CACTTGTATGAATTAGAAAA+AGG | 0.264258 | 6_1:+94978197 | Msa0899660:exon |
| AATCAAAACTGGCAAAATTA+AGG | 0.280803 | 6_1:+94976206 | Msa0899660:CDS |
| CATGTTCATGGACTACTTAA+AGG | 0.300074 | 6_1:+94973304 | None:intergenic |
| TCAAAACCTATGATAGATTA+AGG | 0.300700 | 6_1:+94973513 | Msa0899660:CDS |
| TTCAGGCATGGAGGTTTGTT+TGG | 0.304733 | 6_1:+94973934 | Msa0899660:CDS |
| GTGGTGGGGTGTGGAAATTC+AGG | 0.309535 | 6_1:+94973917 | Msa0899660:CDS |
| GGACCAGCTCCAACTATAAT+TGG | 0.317043 | 6_1:-94973398 | None:intergenic |
| TACAAACTAGTATGCAAAAT+TGG | 0.319837 | 6_1:-94973857 | None:intergenic |
| TTTCTCCTTTCCATCCATTT+GGG | 0.321282 | 6_1:-94978063 | None:intergenic |
| CAATGTACCCACTTGGTTAA+AGG | 0.324458 | 6_1:+94977305 | Msa0899660:CDS |
| GGATATGATGGTAACCCTTT+TGG | 0.329198 | 6_1:-94973581 | None:intergenic |
| TAGCATAGTAAAATCAATAT+TGG | 0.331896 | 6_1:+94973367 | Msa0899660:CDS |
| CTAAACAATTAGCTCTTTCA+AGG | 0.332301 | 6_1:-94973475 | None:intergenic |
| GCAGCATGTCTTAAACAAAA+AGG | 0.336756 | 6_1:+94973437 | Msa0899660:CDS |
| GTACGGCAAGACACCTGTTT+TGG | 0.342983 | 6_1:+94976164 | Msa0899660:CDS |
| ATATTTGGGAAATCAACTTT+TGG | 0.368442 | 6_1:+94976000 | Msa0899660:CDS |
| GGAAGTTGACAAAATTGCTT+TGG | 0.369775 | 6_1:-94973545 | None:intergenic |
| GCTGAATTTGATGTTGTTTG+TGG | 0.371638 | 6_1:+94973689 | Msa0899660:CDS |
| TCTTGCCACAACAAATATTT+GGG | 0.374850 | 6_1:+94975986 | Msa0899660:CDS |
| CCATTTGGGAACGGTTTCCT+TGG | 0.378581 | 6_1:-94978049 | None:intergenic |
| ATGAAGCCTTAATCTATCAT+AGG | 0.395063 | 6_1:-94973519 | None:intergenic |
| TGTTCCATCCCTTCAATTTG+AGG | 0.407826 | 6_1:-94973824 | None:intergenic |
| AAAGGAACAAGAATGCAAAA+TGG | 0.412076 | 6_1:+94973322 | Msa0899660:CDS |
| AATACAGTGGAATTTGTTGA+TGG | 0.421286 | 6_1:+94977234 | Msa0899660:CDS |
| CTCTTATGCCATTTCCAAAA+GGG | 0.422373 | 6_1:+94973567 | Msa0899660:CDS |
| CCTCTTATGCCATTTCCAAA+AGG | 0.423790 | 6_1:+94973566 | Msa0899660:CDS |
| CTAAGGATGGATGAGCATTA+TGG | 0.423920 | 6_1:-94973967 | None:intergenic |
| GTTTCAGGACCAATTATAGT+TGG | 0.432090 | 6_1:+94973389 | Msa0899660:CDS |
| TTCACTAAACGTGGGTTGCT+TGG | 0.432993 | 6_1:+94978106 | Msa0899660:CDS |
| TGTTGCTTTGTTGGATATGA+TGG | 0.433600 | 6_1:-94973593 | None:intergenic |
| CCAAGGAAACCGTTCCCAAA+TGG | 0.436893 | 6_1:+94978049 | Msa0899660:CDS |
| ACAGTAGCTCAAATCAAAAC+TGG | 0.443872 | 6_1:+94976195 | Msa0899660:CDS |
| GAAGGTTCCTCTCCCATTTG+AGG | 0.446496 | 6_1:+94978261 | Msa0899660:three_prime_UTR |
| GATGCTATCATTCTAGCTAC+TGG | 0.448404 | 6_1:+94977273 | Msa0899660:CDS |
| TAATGCTCATCCATCCTTAG+TGG | 0.456388 | 6_1:+94973970 | Msa0899660:CDS |
| GGGGCTCTTCTTGGTTATGA+AGG | 0.456889 | 6_1:+94978243 | Msa0899660:three_prime_UTR |
| CAGAAGATATTGAAACTAGC+TGG | 0.460121 | 6_1:+94978155 | Msa0899660:CDS |
| AAATGGATGGAAAGGAGAAA+AGG | 0.461272 | 6_1:+94978066 | Msa0899660:CDS |
| AAGGTTCCTCTCCCATTTGA+GGG | 0.463769 | 6_1:+94978262 | Msa0899660:three_prime_UTR |
| ATAGTTGGAGCTGGTCCCTC+AGG | 0.471984 | 6_1:+94973404 | Msa0899660:CDS |
| TATATACGTGTAGGTTTGCA+AGG | 0.483343 | 6_1:+94977191 | Msa0899660:intron |
| TCTAATTCATACAAGTGGCT+TGG | 0.484263 | 6_1:-94978191 | None:intergenic |
| AACTAGCTGGAAATCTGTTA+AGG | 0.485182 | 6_1:+94978168 | Msa0899660:CDS |
| CCTTTCCATCCATTTGGGAA+CGG | 0.497265 | 6_1:-94978058 | None:intergenic |
| GAAGTTGTGCCTCAAATTGA+AGG | 0.497449 | 6_1:+94973815 | Msa0899660:CDS |
| GAAGGGATGGAACAATTTCA+AGG | 0.500090 | 6_1:+94973833 | Msa0899660:CDS |
| AATGGATGGAAAGGAGAAAA+GGG | 0.503618 | 6_1:+94978067 | Msa0899660:CDS |
| ACTGTCCCAACATCCAAAAC+AGG | 0.506565 | 6_1:-94976177 | None:intergenic |
| ATCCTTAGTGGTTAGAGATA+CGG | 0.509760 | 6_1:+94973982 | Msa0899660:CDS |
| GCTCTTTCAAGGATTTGACT+TGG | 0.513216 | 6_1:-94973464 | None:intergenic |
| ATGAAGCACCTTTAACCAAG+TGG | 0.526407 | 6_1:-94977313 | None:intergenic |
| GGAATTTGTTGATGGGAAAG+TGG | 0.531587 | 6_1:+94977242 | Msa0899660:CDS |
| GGACCAATTATAGTTGGAGC+TGG | 0.539189 | 6_1:+94973395 | Msa0899660:CDS |
| GGCACATGATCATCAAAAGA+AGG | 0.539333 | 6_1:+94973343 | Msa0899660:CDS |
| CCGTTCCCAAATGGATGGAA+AGG | 0.540578 | 6_1:+94978058 | Msa0899660:CDS |
| GATTTCCCAAATATTTGTTG+TGG | 0.543307 | 6_1:-94975991 | None:intergenic |
| CACCGTATCTCTAACCACTA+AGG | 0.547811 | 6_1:-94973984 | None:intergenic |
| CATACTAGTTTGTATAAGAG+TGG | 0.551040 | 6_1:+94973866 | Msa0899660:CDS |
| GACATGTTTAGTGAGAAAGA+TGG | 0.552783 | 6_1:+94978022 | Msa0899660:CDS |
| GAAAAGGGACTATATGCTGT+TGG | 0.553034 | 6_1:+94978082 | Msa0899660:CDS |
| GTTCATCTATTGATGCAAAG+AGG | 0.556561 | 6_1:+94978128 | Msa0899660:CDS |
| GGAAACCGTTCCCAAATGGA+TGG | 0.562029 | 6_1:+94978053 | Msa0899660:CDS |
| TGTGCCTCAAATTGAAGGGA+TGG | 0.564740 | 6_1:+94973820 | Msa0899660:CDS |
| GCTGTTGGTTTCACTAAACG+TGG | 0.580511 | 6_1:+94978097 | Msa0899660:CDS |
| ATACAGTGGAATTTGTTGAT+GGG | 0.584603 | 6_1:+94977235 | Msa0899660:CDS |
| TGCTGCTGCTGCTAATCCTG+AGG | 0.591531 | 6_1:-94973420 | None:intergenic |
| GTATCTCTAACCACTAAGGA+TGG | 0.609523 | 6_1:-94973980 | None:intergenic |
| AAGTTGTGCCTCAAATTGAA+GGG | 0.631817 | 6_1:+94973816 | Msa0899660:CDS |
| TGAAGCACCTTTAACCAAGT+GGG | 0.640553 | 6_1:-94977312 | None:intergenic |
| ATATACGTGTAGGTTTGCAA+GGG | 0.641719 | 6_1:+94977192 | Msa0899660:intron |
| GTGTGGAAATTCAGGCATGG+AGG | 0.642809 | 6_1:+94973925 | Msa0899660:CDS |
| CTAATTGTTTAGCTTCAATG+TGG | 0.650137 | 6_1:+94973486 | Msa0899660:CDS |
| ACAGAAGCAATGTACCCACT+TGG | 0.652396 | 6_1:+94977298 | Msa0899660:CDS |
| GGGGTGTGGAAATTCAGGCA+TGG | 0.657648 | 6_1:+94973922 | Msa0899660:CDS |
| GCTGCTGCTGCTAATCCTGA+GGG | 0.658588 | 6_1:-94973419 | None:intergenic |
| AAATGGTTGATTGTTGCTAG+TGG | 0.673168 | 6_1:+94973779 | Msa0899660:CDS |
| CTGTTGGTTTCACTAAACGT+GGG | 0.687223 | 6_1:+94978098 | Msa0899660:CDS |
| ACGACTAGCACATAATACAG+TGG | 0.706423 | 6_1:+94977221 | Msa0899660:CDS |
| TGCTAGTGGTGAAAATGCTG+AGG | 0.712690 | 6_1:+94973793 | Msa0899660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | + | chr6_1:94974208-94974227 | Msa0899660:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | + | chr6_1:94974209-94974228 | Msa0899660:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | - | chr6_1:94974208-94974227 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | - | chr6_1:94974209-94974228 | None:intergenic | 0.0% |
| !! | TTATTGAATATTTATGTAAA+TGG | + | chr6_1:94973762-94973781 | Msa0899660:CDS | 10.0% |
| !!! | TAAGAAACAATTAATTTTTT+TGG | - | chr6_1:94974629-94974648 | None:intergenic | 10.0% |
| !!! | ATTAATTGTTTCTTATAATA+AGG | + | chr6_1:94974634-94974653 | Msa0899660:intron | 10.0% |
| !! | TTGTTTATATTAAAATGATA+AGG | + | chr6_1:94975004-94975023 | Msa0899660:intron | 10.0% |
| !! | AAATGTAGAAAATATTATAT+TGG | + | chr6_1:94975324-94975343 | Msa0899660:intron | 10.0% |
| !!! | TAAAGAAAATAATCTTTTTA+GGG | - | chr6_1:94975925-94975944 | None:intergenic | 10.0% |
| !!! | TTAAAGAAAATAATCTTTTT+AGG | - | chr6_1:94975926-94975945 | None:intergenic | 10.0% |
| !! | AAAAACATTATTGTAAAATA+AGG | - | chr6_1:94977624-94977643 | None:intergenic | 10.0% |
| !! | CATTAAAAATCAATTATATA+AGG | + | chr6_1:94977775-94977794 | Msa0899660:intron | 10.0% |
| !! | AAAAGAAAAAAGAAAAAAAA+AGG | + | chr6_1:94978222-94978241 | Msa0899660:three_prime_UTR | 10.0% |
| !! | AAAGAAAAAAGAAAAAAAAA+GGG | + | chr6_1:94978223-94978242 | Msa0899660:three_prime_UTR | 10.0% |
| !!! | ACAATTTTTATCTTACTTAA+AGG | + | chr6_1:94973613-94973632 | Msa0899660:CDS | 15.0% |
| !!! | TTTGATATAAATCCTATTTT+TGG | + | chr6_1:94973650-94973669 | Msa0899660:CDS | 15.0% |
| !! | GTAAATGATAAACAATTTAT+CGG | + | chr6_1:94974846-94974865 | Msa0899660:intron | 15.0% |
| !!! | ATTTTACTTATAAAAGTGAT+CGG | - | chr6_1:94975780-94975799 | None:intergenic | 15.0% |
| !!! | TTTTTTATTTTTATTTGTGC+AGG | + | chr6_1:94975957-94975976 | Msa0899660:intron | 15.0% |
| !! | CTTCATATAAGAATTAATTA+TGG | + | chr6_1:94976534-94976553 | Msa0899660:intron | 15.0% |
| !! | TAGAATATTAAAAATCATAG+AGG | - | chr6_1:94976711-94976730 | None:intergenic | 15.0% |
| !! | TGTTTAGTTATTTATATAGA+GGG | - | chr6_1:94976780-94976799 | None:intergenic | 15.0% |
| !! | TTGTTTAGTTATTTATATAG+AGG | - | chr6_1:94976781-94976800 | None:intergenic | 15.0% |
| !! | TACATTATACTACTAAAAAA+AGG | + | chr6_1:94976947-94976966 | Msa0899660:intron | 15.0% |
| !!! | TTTTTTTAAAAACTTTGTGT+AGG | + | chr6_1:94976970-94976989 | Msa0899660:intron | 15.0% |
| !!! | TTACATATAGTTGATAAATA+TGG | + | chr6_1:94977351-94977370 | Msa0899660:intron | 15.0% |
| !!! | TCTCTAGTTTTTTTTTTTTA+GGG | - | chr6_1:94977456-94977475 | None:intergenic | 15.0% |
| !! | GATTGAAAAAAAAATGAAAT+TGG | - | chr6_1:94977602-94977621 | None:intergenic | 15.0% |
| !! | AAGAAAAAAGAAAAAAAAAG+GGG | + | chr6_1:94978224-94978243 | Msa0899660:three_prime_UTR | 15.0% |
| !! | TAGCATAGTAAAATCAATAT+TGG | + | chr6_1:94973367-94973386 | Msa0899660:CDS | 20.0% |
| !! | ACTCAAGAAATTATGAAAAA+TGG | + | chr6_1:94973728-94973747 | Msa0899660:CDS | 20.0% |
| !! | ATTAGAGACATCAAATTTAT+AGG | + | chr6_1:94974153-94974172 | Msa0899660:intron | 20.0% |
| !! | TTAGAGACATCAAATTTATA+GGG | + | chr6_1:94974154-94974173 | Msa0899660:intron | 20.0% |
| !!! | TAAGAAAAAGTTGACTTTTT+AGG | + | chr6_1:94974540-94974559 | Msa0899660:intron | 20.0% |
| !!! | TTTTTAAATTAGACTGGTTT+AGG | - | chr6_1:94974810-94974829 | None:intergenic | 20.0% |
| !! | AAACCAGTCTAATTTAAAAA+TGG | + | chr6_1:94974810-94974829 | Msa0899660:intron | 20.0% |
| !! | TAAGATAAGTACATTAAGTT+TGG | + | chr6_1:94974963-94974982 | Msa0899660:intron | 20.0% |
| !! | AAGAGATTTGATCTTTAATT+TGG | - | chr6_1:94975210-94975229 | None:intergenic | 20.0% |
| !!! | AAAAAGCATGAAAAAAAAGA+AGG | + | chr6_1:94975261-94975280 | Msa0899660:intron | 20.0% |
| !!! | TATGGCAATTATTTCTTTTT+GGG | - | chr6_1:94975455-94975474 | None:intergenic | 20.0% |
| !!! | ATTAGCTTCTTCAAAAAAAA+TGG | + | chr6_1:94975625-94975644 | Msa0899660:intron | 20.0% |
| !! | TTCTTAAGATTTACTTCATT+TGG | - | chr6_1:94975867-94975886 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGTTGATTAAGAC+AGG | - | chr6_1:94976329-94976348 | None:intergenic | 20.0% |
| !! | GAGTTGAATAAAAAAAACTA+AGG | + | chr6_1:94976472-94976491 | Msa0899660:intron | 20.0% |
| !!! | CCTTTTTTGATAATATGAAT+CGG | - | chr6_1:94976839-94976858 | None:intergenic | 20.0% |
| !! | TGATTATGAAGATGTAAAAT+TGG | - | chr6_1:94977062-94977081 | None:intergenic | 20.0% |
| !! | TATTAGACAAAATCTAATGA+TGG | - | chr6_1:94977163-94977182 | None:intergenic | 20.0% |
| !! | ATAAATATGGTAAATAGCAT+AGG | + | chr6_1:94977364-94977383 | Msa0899660:intron | 20.0% |
| !!! | GTCTCTAGTTTTTTTTTTTT+AGG | - | chr6_1:94977457-94977476 | None:intergenic | 20.0% |
| !! | ACACTTAACAAAATTAAAGA+TGG | - | chr6_1:94977573-94977592 | None:intergenic | 20.0% |
| !!! | ATGTTTTTTCTATCTCTATT+TGG | + | chr6_1:94977636-94977655 | Msa0899660:intron | 20.0% |
| !! | TCTCACATAAAATAAAGATA+AGG | + | chr6_1:94977718-94977737 | Msa0899660:intron | 20.0% |
| !! | AAATCAATTATATAAGGATG+AGG | + | chr6_1:94977781-94977800 | Msa0899660:intron | 20.0% |
| !! | TGTTAATACAATATCAAACT+AGG | - | chr6_1:94977878-94977897 | None:intergenic | 20.0% |
| !! | ATTGAAATTCATTGTGATTA+GGG | + | chr6_1:94977995-94978014 | Msa0899660:intron | 20.0% |
| !! | ACTTGTATGAATTAGAAAAA+GGG | + | chr6_1:94978198-94978217 | Msa0899660:exon | 20.0% |
| !!! | GTAAAATCAATATTGGTTTC+AGG | + | chr6_1:94973374-94973393 | Msa0899660:CDS | 25.0% |
| ! | TCAAAACCTATGATAGATTA+AGG | + | chr6_1:94973513-94973532 | Msa0899660:CDS | 25.0% |
| !!! | GATAAAAATTGTTGCTTTGT+TGG | - | chr6_1:94973605-94973624 | None:intergenic | 25.0% |
| ! | TACAAACTAGTATGCAAAAT+TGG | - | chr6_1:94973860-94973879 | None:intergenic | 25.0% |
| !!! | GTCAACTTTTTCTTATAACA+AGG | - | chr6_1:94974535-94974554 | None:intergenic | 25.0% |
| ! | GTAAAAGAACACTTGAAAAT+CGG | - | chr6_1:94974687-94974706 | None:intergenic | 25.0% |
| !!! | TGTCCATTTTTAAATTAGAC+TGG | - | chr6_1:94974816-94974835 | None:intergenic | 25.0% |
| !!! | AAGATCCATTTGTTTTTCAA+AGG | + | chr6_1:94975034-94975053 | Msa0899660:intron | 25.0% |
| ! | AAAAAGAAGGAAATGTTAAC+CGG | + | chr6_1:94975274-94975293 | Msa0899660:intron | 25.0% |
| !!! | CTATGGCAATTATTTCTTTT+TGG | - | chr6_1:94975456-94975475 | None:intergenic | 25.0% |
| !! | TTTGCTTTAACAACCTTTTT+AGG | - | chr6_1:94975493-94975512 | None:intergenic | 25.0% |
| ! | AAAAAGGTTGTTAAAGCAAA+TGG | + | chr6_1:94975493-94975512 | Msa0899660:intron | 25.0% |
| !!! | AAATAATCTTTTTAGGGAAC+TGG | - | chr6_1:94975919-94975938 | None:intergenic | 25.0% |
| !! | ATATTTGGGAAATCAACTTT+TGG | + | chr6_1:94976000-94976019 | Msa0899660:CDS | 25.0% |
| !!! | TACAAGTTTTTAAGCTCTAA+AGG | - | chr6_1:94976147-94976166 | None:intergenic | 25.0% |
| ! | TTAGAGCTTAAAAACTTGTA+CGG | + | chr6_1:94976147-94976166 | Msa0899660:CDS | 25.0% |
| ! | AATCAAAACTGGCAAAATTA+AGG | + | chr6_1:94976206-94976225 | Msa0899660:CDS | 25.0% |
| !! | AATAAGATGAAAAACCCTTT+TGG | - | chr6_1:94976260-94976279 | None:intergenic | 25.0% |
| ! | CCGATTCATATTATCAAAAA+AGG | + | chr6_1:94976836-94976855 | Msa0899660:intron | 25.0% |
| !! | ATCACAAATCATTTTCTCTT+TGG | - | chr6_1:94976891-94976910 | None:intergenic | 25.0% |
| ! | ATCATCTAATATATACGTGT+AGG | + | chr6_1:94977182-94977201 | Msa0899660:intron | 25.0% |
| !! | AATATTACACTCTATCGATT+TGG | + | chr6_1:94977827-94977846 | Msa0899660:intron | 25.0% |
| !!! | ATATTACACTCTATCGATTT+GGG | + | chr6_1:94977828-94977847 | Msa0899660:intron | 25.0% |
| ! | GATTGAAATTCATTGTGATT+AGG | + | chr6_1:94977994-94978013 | Msa0899660:intron | 25.0% |
| !! | CTTTTTCTAATTCATACAAG+TGG | - | chr6_1:94978199-94978218 | None:intergenic | 25.0% |
| ! | CACTTGTATGAATTAGAAAA+AGG | + | chr6_1:94978197-94978216 | Msa0899660:exon | 25.0% |
| !!! | TTCTTTTTTTTCCCTCAAAT+GGG | - | chr6_1:94978276-94978295 | None:intergenic | 25.0% |
| AAAGGAACAAGAATGCAAAA+TGG | + | chr6_1:94973322-94973341 | Msa0899660:CDS | 30.0% | |
| ! | CTAAACAATTAGCTCTTTCA+AGG | - | chr6_1:94973478-94973497 | None:intergenic | 30.0% |
| ! | CTAATTGTTTAGCTTCAATG+TGG | + | chr6_1:94973486-94973505 | Msa0899660:CDS | 30.0% |
| ATGAAGCCTTAATCTATCAT+AGG | - | chr6_1:94973522-94973541 | None:intergenic | 30.0% | |
| !! | TTGATGTTGTTTGTGGATTT+TGG | + | chr6_1:94973696-94973715 | Msa0899660:CDS | 30.0% |
| ! | CATACTAGTTTGTATAAGAG+TGG | + | chr6_1:94973866-94973885 | Msa0899660:CDS | 30.0% |
| GTTGAAATAGCCAACAAATT+TGG | + | chr6_1:94974079-94974098 | Msa0899660:intron | 30.0% | |
| !!! | CTTTAGTTCTTTTTAGTTCG+TGG | + | chr6_1:94974124-94974143 | Msa0899660:intron | 30.0% |
| ATAAAAGACACCTTCACAAA+AGG | - | chr6_1:94974258-94974277 | None:intergenic | 30.0% | |
| !!! | ACACCAACTACTTTTTATGA+AGG | + | chr6_1:94974307-94974326 | Msa0899660:intron | 30.0% |
| ACACCTTCATAAAAAGTAGT+TGG | - | chr6_1:94974313-94974332 | None:intergenic | 30.0% | |
| ! | CTTTTTCTTATAACAAGGAC+CGG | - | chr6_1:94974530-94974549 | None:intergenic | 30.0% |
| TTCTTATAATAAGGACCGAA+TGG | + | chr6_1:94974643-94974662 | Msa0899660:intron | 30.0% | |
| GGAAAAAACAATACTCCATT+CGG | - | chr6_1:94974661-94974680 | None:intergenic | 30.0% | |
| AAAGAAGTTAGTTGTAGTGA+CGG | - | chr6_1:94974933-94974952 | None:intergenic | 30.0% | |
| !! | CCATTTGTTTTTCAAAGGTA+CGG | + | chr6_1:94975039-94975058 | Msa0899660:intron | 30.0% |
| !! | TTTTAGTTATCCTGACACAA+AGG | - | chr6_1:94975245-94975264 | None:intergenic | 30.0% |
| CTGGTTAAGGAAACTAAAAA+AGG | - | chr6_1:94975407-94975426 | None:intergenic | 30.0% | |
| GTGTCTACAATTTCCTAAAA+AGG | + | chr6_1:94975477-94975496 | Msa0899660:intron | 30.0% | |
| AATTCTCTCAGATGTCAATT+GGG | + | chr6_1:94975594-94975613 | Msa0899660:intron | 30.0% | |
| TAACAAGTGTCTTAAACAAG+TGG | + | chr6_1:94975653-94975672 | Msa0899660:intron | 30.0% | |
| TACTTATAAAAGTGATCGGA+TGG | - | chr6_1:94975776-94975795 | None:intergenic | 30.0% | |
| ATCTTGCCACAACAAATATT+TGG | + | chr6_1:94975985-94976004 | Msa0899660:CDS | 30.0% | |
| TCTTGCCACAACAAATATTT+GGG | + | chr6_1:94975986-94976005 | Msa0899660:CDS | 30.0% | |
| ! | GATTTCCCAAATATTTGTTG+TGG | - | chr6_1:94975994-94976013 | None:intergenic | 30.0% |
| !!! | CAACTTTTGGTTTATCTATG+TGG | + | chr6_1:94976013-94976032 | Msa0899660:CDS | 30.0% |
| TATCTATGTGGTTGCTTAAA+TGG | + | chr6_1:94976025-94976044 | Msa0899660:CDS | 30.0% | |
| CTAATGTCAGATCTTATTCT+TGG | + | chr6_1:94976081-94976100 | Msa0899660:CDS | 30.0% | |
| GGAATTGAAAGACCAAAAAT+TGG | + | chr6_1:94976120-94976139 | Msa0899660:CDS | 30.0% | |
| ACATACCAATCAAATCCAAA+AGG | + | chr6_1:94976242-94976261 | Msa0899660:intron | 30.0% | |
| CATACCAATCAAATCCAAAA+GGG | + | chr6_1:94976243-94976262 | Msa0899660:intron | 30.0% | |
| ! | AAAACCCTTTTGGATTTGAT+TGG | - | chr6_1:94976250-94976269 | None:intergenic | 30.0% |
| !!! | TTAATGTGTGTTTTGATCCA+CGG | + | chr6_1:94976358-94976377 | Msa0899660:intron | 30.0% |
| ! | TCCAGAAATTTTGAATAGTC+TGG | + | chr6_1:94976606-94976625 | Msa0899660:intron | 30.0% |
| TCCAGACTATTCAAAATTTC+TGG | - | chr6_1:94976610-94976629 | None:intergenic | 30.0% | |
| TAGTTGACAATTTGATCACA+TGG | - | chr6_1:94976923-94976942 | None:intergenic | 30.0% | |
| TTTGAATATTGTCGAGTTCA+TGG | - | chr6_1:94977029-94977048 | None:intergenic | 30.0% | |
| !!! | ATCTCTCTCTTTTTTTCTCT+TGG | + | chr6_1:94977121-94977140 | Msa0899660:intron | 30.0% |
| !! | AATACAGTGGAATTTGTTGA+TGG | + | chr6_1:94977234-94977253 | Msa0899660:CDS | 30.0% |
| !! | ATACAGTGGAATTTGTTGAT+GGG | + | chr6_1:94977235-94977254 | Msa0899660:CDS | 30.0% |
| CATAGGAAAGAGTTGAATTA+AGG | + | chr6_1:94977381-94977400 | Msa0899660:intron | 30.0% | |
| ATACAATATCAAACTAGGTG+CGG | - | chr6_1:94977873-94977892 | None:intergenic | 30.0% | |
| !!! | GTTCTTTTTTTTCCCTCAAA+TGG | - | chr6_1:94978277-94978296 | None:intergenic | 30.0% |
| GTTTCAGGACCAATTATAGT+TGG | + | chr6_1:94973389-94973408 | Msa0899660:CDS | 35.0% | |
| GCAGCATGTCTTAAACAAAA+AGG | + | chr6_1:94973437-94973456 | Msa0899660:CDS | 35.0% | |
| GGAAGTTGACAAAATTGCTT+TGG | - | chr6_1:94973548-94973567 | None:intergenic | 35.0% | |
| ! | CTCTTATGCCATTTCCAAAA+GGG | + | chr6_1:94973567-94973586 | Msa0899660:CDS | 35.0% |
| !! | TGTTGCTTTGTTGGATATGA+TGG | - | chr6_1:94973596-94973615 | None:intergenic | 35.0% |
| !!! | TCCTATTTTTGGCAAACAAG+TGG | + | chr6_1:94973661-94973680 | Msa0899660:CDS | 35.0% |
| ACCACTTGTTTGCCAAAAAT+AGG | - | chr6_1:94973665-94973684 | None:intergenic | 35.0% | |
| ! | GCTGAATTTGATGTTGTTTG+TGG | + | chr6_1:94973689-94973708 | Msa0899660:CDS | 35.0% |
| AAATGGTTGATTGTTGCTAG+TGG | + | chr6_1:94973779-94973798 | Msa0899660:CDS | 35.0% | |
| AAGTTGTGCCTCAAATTGAA+GGG | + | chr6_1:94973816-94973835 | Msa0899660:CDS | 35.0% | |
| !! | TTGTGGGAAGAATGTTTTAG+TGG | + | chr6_1:94973898-94973917 | Msa0899660:CDS | 35.0% |
| ATCCTTAGTGGTTAGAGATA+CGG | + | chr6_1:94973982-94974001 | Msa0899660:CDS | 35.0% | |
| GAAATAGCCAACAAATTTGG+AGG | + | chr6_1:94974082-94974101 | Msa0899660:intron | 35.0% | |
| ! | TTTTCAGCCTCCAAATTTGT+TGG | - | chr6_1:94974092-94974111 | None:intergenic | 35.0% |
| ! | ATAGAAGACACCTTTTGTGA+AGG | + | chr6_1:94974245-94974264 | Msa0899660:intron | 35.0% |
| AAAGTGAAAATCACACCTTG+AGG | + | chr6_1:94974356-94974375 | Msa0899660:intron | 35.0% | |
| ! | TTTTATCAAGTCACACCTCA+AGG | - | chr6_1:94974374-94974393 | None:intergenic | 35.0% |
| !!! | CACCACACTACTTTTTATGA+AGG | + | chr6_1:94974396-94974415 | Msa0899660:intron | 35.0% |
| CACCTTCATAAAAAGTAGTG+TGG | - | chr6_1:94974401-94974420 | None:intergenic | 35.0% | |
| AGAACACTTGAAAATCGGAA+AGG | - | chr6_1:94974682-94974701 | None:intergenic | 35.0% | |
| ! | CCGTACCTTTGAAAAACAAA+TGG | - | chr6_1:94975042-94975061 | None:intergenic | 35.0% |
| GAAAGTGAGAGAACAAAGAA+TGG | - | chr6_1:94975133-94975152 | None:intergenic | 35.0% | |
| CTTTGTTCTCTCACTTTCAT+TGG | + | chr6_1:94975135-94975154 | Msa0899660:intron | 35.0% | |
| AGGAAATTGTAGACACACTA+TGG | - | chr6_1:94975473-94975492 | None:intergenic | 35.0% | |
| CAATTCTCTCAGATGTCAAT+TGG | + | chr6_1:94975593-94975612 | Msa0899660:intron | 35.0% | |
| ! | ATGGTTCTCTGTTCATTTTG+TGG | + | chr6_1:94976044-94976063 | Msa0899660:CDS | 35.0% |
| CTTGGAGATACATCTCAATT+TGG | + | chr6_1:94976099-94976118 | Msa0899660:CDS | 35.0% | |
| !!! | AGCTCTAAAGGACCAATTTT+TGG | - | chr6_1:94976135-94976154 | None:intergenic | 35.0% |
| ACAGTAGCTCAAATCAAAAC+TGG | + | chr6_1:94976195-94976214 | Msa0899660:CDS | 35.0% | |
| ! | AAAATAAACTTTTGCCACCG+TGG | - | chr6_1:94976378-94976397 | None:intergenic | 35.0% |
| ! | AAAATTTCTGGATCTGTCAC+TGG | - | chr6_1:94976598-94976617 | None:intergenic | 35.0% |
| TCATAGAGGACAACTATGAT+GGG | - | chr6_1:94976697-94976716 | None:intergenic | 35.0% | |
| ATCATAGAGGACAACTATGA+TGG | - | chr6_1:94976698-94976717 | None:intergenic | 35.0% | |
| AATCGGATGTGAAATCGAAT+AGG | - | chr6_1:94976822-94976841 | None:intergenic | 35.0% | |
| ATGCAAGTTAAAGCATGTGT+GGG | - | chr6_1:94977002-94977021 | None:intergenic | 35.0% | |
| AATATTGTCGAGTTCATGGA+CGG | - | chr6_1:94977025-94977044 | None:intergenic | 35.0% | |
| TATATACGTGTAGGTTTGCA+AGG | + | chr6_1:94977191-94977210 | Msa0899660:intron | 35.0% | |
| ATATACGTGTAGGTTTGCAA+GGG | + | chr6_1:94977192-94977211 | Msa0899660:intron | 35.0% | |
| TACAATATCAAACTAGGTGC+GGG | - | chr6_1:94977872-94977891 | None:intergenic | 35.0% | |
| GACATGTTTAGTGAGAAAGA+TGG | + | chr6_1:94978022-94978041 | Msa0899660:CDS | 35.0% | |
| TTTCTCCTTTCCATCCATTT+GGG | - | chr6_1:94978066-94978085 | None:intergenic | 35.0% | |
| ! | TTTTCTCCTTTCCATCCATT+TGG | - | chr6_1:94978067-94978086 | None:intergenic | 35.0% |
| AAATGGATGGAAAGGAGAAA+AGG | + | chr6_1:94978066-94978085 | Msa0899660:CDS | 35.0% | |
| AATGGATGGAAAGGAGAAAA+GGG | + | chr6_1:94978067-94978086 | Msa0899660:CDS | 35.0% | |
| GTTCATCTATTGATGCAAAG+AGG | + | chr6_1:94978128-94978147 | Msa0899660:CDS | 35.0% | |
| CAGAAGATATTGAAACTAGC+TGG | + | chr6_1:94978155-94978174 | Msa0899660:CDS | 35.0% | |
| AACTAGCTGGAAATCTGTTA+AGG | + | chr6_1:94978168-94978187 | Msa0899660:CDS | 35.0% | |
| TCTAATTCATACAAGTGGCT+TGG | - | chr6_1:94978194-94978213 | None:intergenic | 35.0% | |
| AAAAAAAAAGGGGCTCTTCT+TGG | + | chr6_1:94978234-94978253 | Msa0899660:three_prime_UTR | 35.0% | |
| GGCACATGATCATCAAAAGA+AGG | + | chr6_1:94973343-94973362 | Msa0899660:CDS | 40.0% | |
| GCTCTTTCAAGGATTTGACT+TGG | - | chr6_1:94973467-94973486 | None:intergenic | 40.0% | |
| !! | CCTTTTGGAAATGGCATAAG+AGG | - | chr6_1:94973569-94973588 | None:intergenic | 40.0% |
| ! | CCTCTTATGCCATTTCCAAA+AGG | + | chr6_1:94973566-94973585 | Msa0899660:CDS | 40.0% |
| !! | GATGGTAACCCTTTTGGAAA+TGG | - | chr6_1:94973578-94973597 | None:intergenic | 40.0% |
| ! | GGATATGATGGTAACCCTTT+TGG | - | chr6_1:94973584-94973603 | None:intergenic | 40.0% |
| GAAGTTGTGCCTCAAATTGA+AGG | + | chr6_1:94973815-94973834 | Msa0899660:CDS | 40.0% | |
| TGTTCCATCCCTTCAATTTG+AGG | - | chr6_1:94973827-94973846 | None:intergenic | 40.0% | |
| GAAGGGATGGAACAATTTCA+AGG | + | chr6_1:94973833-94973852 | Msa0899660:CDS | 40.0% | |
| ! | AAGAGTGGTAGCATGTTTTG+TGG | + | chr6_1:94973881-94973900 | Msa0899660:CDS | 40.0% |
| ! | AGAGTGGTAGCATGTTTTGT+GGG | + | chr6_1:94973882-94973901 | Msa0899660:CDS | 40.0% |
| !!! | TGGGAAGAATGTTTTAGTGG+TGG | + | chr6_1:94973901-94973920 | Msa0899660:CDS | 40.0% |
| !!! | GGGAAGAATGTTTTAGTGGT+GGG | + | chr6_1:94973902-94973921 | Msa0899660:CDS | 40.0% |
| !!! | GGAAGAATGTTTTAGTGGTG+GGG | + | chr6_1:94973903-94973922 | Msa0899660:CDS | 40.0% |
| CTAAGGATGGATGAGCATTA+TGG | - | chr6_1:94973970-94973989 | None:intergenic | 40.0% | |
| TAATGCTCATCCATCCTTAG+TGG | + | chr6_1:94973970-94973989 | Msa0899660:CDS | 40.0% | |
| GTATCTCTAACCACTAAGGA+TGG | - | chr6_1:94973983-94974002 | None:intergenic | 40.0% | |
| GCATAAAATCATACTCCCTC+CGG | + | chr6_1:94974508-94974527 | Msa0899660:intron | 40.0% | |
| TTCTTATAACAAGGACCGGA+GGG | - | chr6_1:94974526-94974545 | None:intergenic | 40.0% | |
| TTTCTTATAACAAGGACCGG+AGG | - | chr6_1:94974527-94974546 | None:intergenic | 40.0% | |
| TGATTCCTTAACCAGTGTCT+CGG | - | chr6_1:94975305-94975324 | None:intergenic | 40.0% | |
| TTGGCAACGTGGTATTTGTT+TGG | + | chr6_1:94975534-94975553 | Msa0899660:intron | 40.0% | |
| ! | GTGGTATTTGTTTGGAGTCT+GGG | + | chr6_1:94975542-94975561 | Msa0899660:intron | 40.0% |
| !! | AAGACACCTGTTTTGGATGT+TGG | + | chr6_1:94976171-94976190 | Msa0899660:CDS | 40.0% |
| !! | AGACACCTGTTTTGGATGTT+GGG | + | chr6_1:94976172-94976191 | Msa0899660:CDS | 40.0% |
| GAAATCGAATAGGAGATGAC+TGG | - | chr6_1:94976812-94976831 | None:intergenic | 40.0% | |
| GATGCAAGTTAAAGCATGTG+TGG | - | chr6_1:94977003-94977022 | None:intergenic | 40.0% | |
| ACGACTAGCACATAATACAG+TGG | + | chr6_1:94977221-94977240 | Msa0899660:CDS | 40.0% | |
| !! | GGAATTTGTTGATGGGAAAG+TGG | + | chr6_1:94977242-94977261 | Msa0899660:CDS | 40.0% |
| ! | GATGCTATCATTCTAGCTAC+TGG | + | chr6_1:94977273-94977292 | Msa0899660:CDS | 40.0% |
| CAATGTACCCACTTGGTTAA+AGG | + | chr6_1:94977305-94977324 | Msa0899660:CDS | 40.0% | |
| ! | TGAAGCACCTTTAACCAAGT+GGG | - | chr6_1:94977315-94977334 | None:intergenic | 40.0% |
| ! | ATGAAGCACCTTTAACCAAG+TGG | - | chr6_1:94977316-94977335 | None:intergenic | 40.0% |
| ACAATATCAAACTAGGTGCG+GGG | - | chr6_1:94977871-94977890 | None:intergenic | 40.0% | |
| ! | GTGAGAAAGATGGTTTTCCA+AGG | + | chr6_1:94978032-94978051 | Msa0899660:CDS | 40.0% |
| GAAAAGGGACTATATGCTGT+TGG | + | chr6_1:94978082-94978101 | Msa0899660:CDS | 40.0% | |
| !! | CTGTTGGTTTCACTAAACGT+GGG | + | chr6_1:94978098-94978117 | Msa0899660:CDS | 40.0% |
| !!! | TTTTTTCCCTCAAATGGGAG+AGG | - | chr6_1:94978271-94978290 | None:intergenic | 40.0% |
| GGACCAATTATAGTTGGAGC+TGG | + | chr6_1:94973395-94973414 | Msa0899660:CDS | 45.0% | |
| GGACCAGCTCCAACTATAAT+TGG | - | chr6_1:94973401-94973420 | None:intergenic | 45.0% | |
| TGCTAGTGGTGAAAATGCTG+AGG | + | chr6_1:94973793-94973812 | Msa0899660:CDS | 45.0% | |
| TGTGCCTCAAATTGAAGGGA+TGG | + | chr6_1:94973820-94973839 | Msa0899660:CDS | 45.0% | |
| !!! | AATGTTTTAGTGGTGGGGTG+TGG | + | chr6_1:94973908-94973927 | Msa0899660:CDS | 45.0% |
| ! | TTCAGGCATGGAGGTTTGTT+TGG | + | chr6_1:94973934-94973953 | Msa0899660:CDS | 45.0% |
| CACCGTATCTCTAACCACTA+AGG | - | chr6_1:94973987-94974006 | None:intergenic | 45.0% | |
| TAGTTTCCTTAACCAGTGCC+CGG | + | chr6_1:94975411-94975430 | Msa0899660:intron | 45.0% | |
| ! | CGTGGTATTTGTTTGGAGTC+TGG | + | chr6_1:94975541-94975560 | Msa0899660:intron | 45.0% |
| ACTGTCCCAACATCCAAAAC+AGG | - | chr6_1:94976180-94976199 | None:intergenic | 45.0% | |
| !!! | ATGTGTGTTTTGATCCACGG+TGG | + | chr6_1:94976361-94976380 | Msa0899660:intron | 45.0% |
| !! | TCACTGGTCGAGTTGAATTG+TGG | - | chr6_1:94976582-94976601 | None:intergenic | 45.0% |
| ACAGAAGCAATGTACCCACT+TGG | + | chr6_1:94977298-94977317 | Msa0899660:CDS | 45.0% | |
| GCGGGGATATAAATCATAGG+CGG | - | chr6_1:94977854-94977873 | None:intergenic | 45.0% | |
| GGTGCGGGGATATAAATCAT+AGG | - | chr6_1:94977857-94977876 | None:intergenic | 45.0% | |
| CCTTTCCATCCATTTGGGAA+CGG | - | chr6_1:94978061-94978080 | None:intergenic | 45.0% | |
| !! | GCTGTTGGTTTCACTAAACG+TGG | + | chr6_1:94978097-94978116 | Msa0899660:CDS | 45.0% |
| ! | TTCACTAAACGTGGGTTGCT+TGG | + | chr6_1:94978106-94978125 | Msa0899660:CDS | 45.0% |
| AAGGTTCCTCTCCCATTTGA+GGG | + | chr6_1:94978262-94978281 | Msa0899660:three_prime_UTR | 45.0% | |
| GTGTGGAAATTCAGGCATGG+AGG | + | chr6_1:94973925-94973944 | Msa0899660:CDS | 50.0% | |
| CTGCAAAGAGCCTTTGTGTC+AGG | + | chr6_1:94975232-94975251 | Msa0899660:intron | 50.0% | |
| TTCCTTAACCAGTGTCTCGG+AGG | - | chr6_1:94975302-94975321 | None:intergenic | 50.0% | |
| AGTTTCCTTAACCAGTGCCC+GGG | + | chr6_1:94975412-94975431 | Msa0899660:intron | 50.0% | |
| GTCTCTTAACCCACTTGCGT+TGG | + | chr6_1:94975515-94975534 | Msa0899660:intron | 50.0% | |
| ! | GTACGGCAAGACACCTGTTT+TGG | + | chr6_1:94976164-94976183 | Msa0899660:CDS | 50.0% |
| CCATTTGGGAACGGTTTCCT+TGG | - | chr6_1:94978052-94978071 | None:intergenic | 50.0% | |
| CCAAGGAAACCGTTCCCAAA+TGG | + | chr6_1:94978049-94978068 | Msa0899660:CDS | 50.0% | |
| GGAAACCGTTCCCAAATGGA+TGG | + | chr6_1:94978053-94978072 | Msa0899660:CDS | 50.0% | |
| CCGTTCCCAAATGGATGGAA+AGG | + | chr6_1:94978058-94978077 | Msa0899660:CDS | 50.0% | |
| GGGGCTCTTCTTGGTTATGA+AGG | + | chr6_1:94978243-94978262 | Msa0899660:three_prime_UTR | 50.0% | |
| GAAGGTTCCTCTCCCATTTG+AGG | + | chr6_1:94978261-94978280 | Msa0899660:three_prime_UTR | 50.0% | |
| ATAGTTGGAGCTGGTCCCTC+AGG | + | chr6_1:94973404-94973423 | Msa0899660:CDS | 55.0% | |
| GCTGCTGCTGCTAATCCTGA+GGG | - | chr6_1:94973422-94973441 | None:intergenic | 55.0% | |
| TGCTGCTGCTGCTAATCCTG+AGG | - | chr6_1:94973423-94973442 | None:intergenic | 55.0% | |
| ! | GTGGTGGGGTGTGGAAATTC+AGG | + | chr6_1:94973917-94973936 | Msa0899660:CDS | 55.0% |
| GGGGTGTGGAAATTCAGGCA+TGG | + | chr6_1:94973922-94973941 | Msa0899660:CDS | 55.0% | |
| ! | TGCCTCCGAGACACTGGTTA+AGG | + | chr6_1:94975297-94975316 | Msa0899660:intron | 55.0% |
| GTTTCCTTAACCAGTGCCCG+GGG | + | chr6_1:94975413-94975432 | Msa0899660:intron | 55.0% | |
| TTTCCTTAACCAGTGCCCGG+GGG | + | chr6_1:94975414-94975433 | Msa0899660:intron | 55.0% | |
| TCTTGTTAACCAGTGCCCCC+GGG | - | chr6_1:94975432-94975451 | None:intergenic | 55.0% | |
| ! | GTCTTGTTAACCAGTGCCCC+CGG | - | chr6_1:94975433-94975452 | None:intergenic | 55.0% |
| ACCACGTTGCCAACGCAAGT+GGG | - | chr6_1:94975527-94975546 | None:intergenic | 55.0% | |
| TACCACGTTGCCAACGCAAG+TGG | - | chr6_1:94975528-94975547 | None:intergenic | 55.0% | |
| ! | AACCAGTGTCTCGGAGGCAC+CGG | - | chr6_1:94975296-94975315 | None:intergenic | 60.0% |
| ! | ACCCACTTGCGTTGGCAACG+TGG | + | chr6_1:94975523-94975542 | Msa0899660:intron | 60.0% |
| AACCGGTGCCTCCGAGACAC+TGG | + | chr6_1:94975291-94975310 | Msa0899660:intron | 65.0% | |
| !! | GTGCCCCCGGGCACTGGTTA+AGG | - | chr6_1:94975420-94975439 | None:intergenic | 70.0% |
| ! | TAACCAGTGCCCGGGGGCAC+TGG | + | chr6_1:94975420-94975439 | Msa0899660:intron | 70.0% |
| TAACCAGTGCCCCCGGGCAC+TGG | - | chr6_1:94975426-94975445 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 94973311 | 94978318 | 94973311 | ID=Msa0899660;Name=Msa0899660 |
| chr6_1 | mRNA | 94973311 | 94978318 | 94973311 | ID=Msa0899660-mRNA-1;Parent=Msa0899660;Name=Msa0899660-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0.75|1|1|1|4|111|418 |
| chr6_1 | exon | 94973311 | 94974003 | 94973311 | ID=Msa0899660-mRNA-1:exon:16269;Parent=Msa0899660-mRNA-1 |
| chr6_1 | exon | 94975979 | 94976227 | 94975979 | ID=Msa0899660-mRNA-1:exon:16270;Parent=Msa0899660-mRNA-1 |
| chr6_1 | exon | 94977204 | 94977326 | 94977204 | ID=Msa0899660-mRNA-1:exon:16271;Parent=Msa0899660-mRNA-1 |
| chr6_1 | exon | 94978016 | 94978318 | 94978016 | ID=Msa0899660-mRNA-1:exon:16272;Parent=Msa0899660-mRNA-1 |
| chr6_1 | CDS | 94973311 | 94974003 | 94973311 | ID=Msa0899660-mRNA-1:cds;Parent=Msa0899660-mRNA-1 |
| chr6_1 | CDS | 94975979 | 94976227 | 94975979 | ID=Msa0899660-mRNA-1:cds;Parent=Msa0899660-mRNA-1 |
| chr6_1 | CDS | 94977204 | 94977326 | 94977204 | ID=Msa0899660-mRNA-1:cds;Parent=Msa0899660-mRNA-1 |
| chr6_1 | CDS | 94978016 | 94978207 | 94978016 | ID=Msa0899660-mRNA-1:cds;Parent=Msa0899660-mRNA-1 |
| chr6_1 | three_prime_UTR | 94978208 | 94978318 | 94978208 | ID=Msa0899660-mRNA-1:three_prime_utr;Parent=Msa0899660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
