Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0927210 | XP_013453101.2 | 97.847 | 418 | 9 | 0 | 1 | 418 | 3 | 420 | 0.0 | 845 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0927210 | sp|Q9SVQ1|YUC2_ARATH | 65.271 | 406 | 136 | 3 | 1 | 406 | 1 | 401 | 0.0 | 560 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0899660 | Msa0927210 | 0.936083 | 3.059049e-97 | -8.615850e-47 |
| Msa0927210 | Msa0964700 | 0.861408 | 1.048056e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0927210 | MtrunA17_Chr6g0485621 | 97.847 | 418 | 9 | 0 | 1 | 418 | 3 | 420 | 0.0 | 845 |
| Msa0927210 | MtrunA17_Chr1g0147221 | 65.238 | 420 | 131 | 3 | 3 | 411 | 4 | 419 | 0.0 | 569 |
| Msa0927210 | MtrunA17_Chr3g0139441 | 65.476 | 420 | 133 | 3 | 1 | 411 | 1 | 417 | 0.0 | 567 |
| Msa0927210 | MtrunA17_Chr1g0148801 | 60.406 | 394 | 148 | 3 | 22 | 415 | 8 | 393 | 0.0 | 514 |
| Msa0927210 | MtrunA17_Chr1g0182991 | 59.548 | 398 | 154 | 4 | 14 | 410 | 9 | 400 | 3.94e-177 | 501 |
| Msa0927210 | MtrunA17_Chr1g0169111 | 58.247 | 388 | 160 | 2 | 23 | 410 | 95 | 480 | 1.38e-175 | 499 |
| Msa0927210 | MtrunA17_Chr7g0262591 | 56.533 | 398 | 161 | 4 | 14 | 410 | 9 | 395 | 4.38e-168 | 477 |
| Msa0927210 | MtrunA17_Chr7g0262471 | 54.459 | 314 | 132 | 3 | 98 | 410 | 213 | 516 | 5.00e-121 | 362 |
| Msa0927210 | MtrunA17_Chr8g0350371 | 44.063 | 379 | 203 | 3 | 31 | 408 | 7 | 377 | 2.96e-118 | 349 |
| Msa0927210 | MtrunA17_Chr7g0268611 | 44.180 | 378 | 202 | 4 | 31 | 407 | 9 | 378 | 5.32e-118 | 349 |
| Msa0927210 | MtrunA17_Chr5g0412881 | 45.669 | 381 | 196 | 4 | 31 | 409 | 7 | 378 | 1.60e-116 | 345 |
| Msa0927210 | MtrunA17_Chr7g0268621 | 46.950 | 377 | 189 | 6 | 31 | 405 | 7 | 374 | 9.38e-116 | 343 |
| Msa0927210 | MtrunA17_Chr3g0125701 | 43.229 | 384 | 209 | 3 | 31 | 413 | 8 | 383 | 1.35e-111 | 333 |
| Msa0927210 | MtrunA17_Chr3g0125711 | 43.490 | 384 | 208 | 3 | 31 | 413 | 8 | 383 | 1.85e-111 | 333 |
| Msa0927210 | MtrunA17_Chr3g0125691 | 42.969 | 384 | 210 | 3 | 31 | 413 | 8 | 383 | 6.34e-110 | 328 |
| Msa0927210 | MtrunA17_Chr4g0025641 | 45.545 | 202 | 107 | 1 | 31 | 232 | 17 | 215 | 1.39e-59 | 194 |
| Msa0927210 | MtrunA17_Chr4g0025651 | 44.785 | 163 | 88 | 2 | 247 | 408 | 11 | 172 | 1.90e-40 | 142 |
| Msa0927210 | MtrunA17_Chr3g0129991 | 41.463 | 123 | 67 | 2 | 88 | 209 | 1 | 119 | 1.07e-26 | 103 |
| Msa0927210 | MtrunA17_Chr3g0091441 | 24.658 | 219 | 129 | 8 | 32 | 217 | 15 | 230 | 5.70e-13 | 70.5 |
| Msa0927210 | MtrunA17_Chr8g0352461 | 25.352 | 213 | 127 | 7 | 32 | 218 | 6 | 212 | 4.10e-12 | 67.8 |
| Msa0927210 | MtrunA17_Chr8g0352481 | 25.822 | 213 | 125 | 7 | 32 | 218 | 6 | 211 | 4.16e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0927210 | AT4G13260.1 | 65.271 | 406 | 136 | 3 | 1 | 406 | 1 | 401 | 0.0 | 560 |
| Msa0927210 | AT5G25620.1 | 62.802 | 414 | 145 | 3 | 1 | 410 | 1 | 409 | 0.0 | 548 |
| Msa0927210 | AT5G25620.2 | 62.802 | 414 | 145 | 3 | 1 | 410 | 1 | 409 | 0.0 | 548 |
| Msa0927210 | AT5G11320.1 | 58.673 | 392 | 152 | 2 | 18 | 409 | 5 | 386 | 6.84e-176 | 497 |
| Msa0927210 | AT1G04610.1 | 58.763 | 388 | 159 | 1 | 23 | 410 | 30 | 416 | 2.17e-173 | 492 |
| Msa0927210 | AT4G32540.1 | 56.250 | 400 | 165 | 3 | 12 | 410 | 3 | 393 | 4.62e-169 | 480 |
| Msa0927210 | AT4G32540.2 | 56.219 | 402 | 164 | 4 | 12 | 410 | 3 | 395 | 1.45e-167 | 476 |
| Msa0927210 | AT5G43890.1 | 56.298 | 389 | 166 | 3 | 23 | 410 | 18 | 403 | 1.72e-166 | 474 |
| Msa0927210 | AT4G28720.1 | 54.430 | 395 | 177 | 3 | 23 | 416 | 18 | 410 | 3.70e-166 | 473 |
| Msa0927210 | AT1G04180.1 | 56.555 | 389 | 162 | 4 | 23 | 410 | 18 | 400 | 5.86e-166 | 473 |
| Msa0927210 | AT2G33230.1 | 57.990 | 388 | 161 | 1 | 23 | 410 | 25 | 410 | 3.17e-165 | 471 |
| Msa0927210 | AT5G11320.2 | 58.284 | 338 | 132 | 1 | 18 | 355 | 5 | 333 | 1.65e-149 | 428 |
| Msa0927210 | AT4G13260.2 | 61.905 | 315 | 115 | 3 | 1 | 315 | 1 | 310 | 4.44e-144 | 413 |
| Msa0927210 | AT4G13260.3 | 67.123 | 292 | 93 | 2 | 116 | 407 | 11 | 299 | 1.32e-141 | 406 |
| Msa0927210 | AT1G21430.1 | 46.579 | 380 | 189 | 6 | 31 | 407 | 10 | 378 | 4.64e-121 | 357 |
| Msa0927210 | AT1G48910.1 | 43.229 | 384 | 209 | 3 | 31 | 413 | 6 | 381 | 4.81e-117 | 347 |
| Msa0927210 | AT1G19250.1 | 23.684 | 380 | 211 | 16 | 32 | 346 | 15 | 380 | 2.73e-14 | 75.1 |
| Msa0927210 | AT5G61290.1 | 26.941 | 219 | 127 | 6 | 32 | 219 | 18 | 234 | 5.27e-14 | 73.9 |
| Msa0927210 | AT1G65860.1 | 23.744 | 219 | 126 | 6 | 32 | 218 | 15 | 224 | 3.10e-13 | 71.6 |
| Msa0927210 | AT5G45180.1 | 23.864 | 352 | 205 | 16 | 32 | 346 | 15 | 340 | 8.84e-13 | 70.1 |
| Msa0927210 | AT1G62560.2 | 22.222 | 216 | 134 | 5 | 32 | 218 | 15 | 225 | 1.73e-12 | 68.9 |
| Msa0927210 | AT1G62560.1 | 22.222 | 216 | 134 | 5 | 32 | 218 | 15 | 225 | 1.84e-12 | 69.3 |
Find 86 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCTATGTGGTTGCTTAAA+TGG | 0.146621 | 6_2:+71401368 | Msa0927210:CDS |
| ATCTTGCCACAACAAATATT+TGG | 0.151089 | 6_2:+71401328 | Msa0927210:CDS |
| TTGATGTTGTTTGTGGATTT+TGG | 0.180380 | 6_2:+71399322 | Msa0927210:CDS |
| TTATTGAATATTTATGTAAA+TGG | 0.192064 | 6_2:+71399388 | Msa0927210:CDS |
| CTTGGAGATACATCTCAATT+TGG | 0.240393 | 6_2:+71401442 | Msa0927210:CDS |
| GTAAAATCAATATTGGTTTC+AGG | 0.248308 | 6_2:+71399000 | Msa0927210:CDS |
| CTAATGTCAGATCTTATTCT+TGG | 0.255630 | 6_2:+71401424 | Msa0927210:CDS |
| CACTTGTATGAATTAGAAAA+AGG | 0.264258 | 6_2:+71403530 | Msa0927210:exon |
| AATCAAAACTGGCAAAATTA+AGG | 0.280803 | 6_2:+71401549 | Msa0927210:CDS |
| CATGTTCATGGACTACTTAA+AGG | 0.300074 | 6_2:+71398930 | None:intergenic |
| TCAAAACCTATGATAGATTA+AGG | 0.300700 | 6_2:+71399139 | Msa0927210:CDS |
| TTCAGGCATGGAGGTTTGTT+TGG | 0.304733 | 6_2:+71399560 | Msa0927210:CDS |
| GTGGTGGGGTGTGGAAATTC+AGG | 0.309535 | 6_2:+71399543 | Msa0927210:CDS |
| GGACCAGCTCCAACTATAAT+TGG | 0.317043 | 6_2:-71399024 | None:intergenic |
| TACAAACTAGTATGCAAAAT+TGG | 0.319837 | 6_2:-71399483 | None:intergenic |
| TTTCTCCTTTCCATCCATTT+GGG | 0.321282 | 6_2:-71403396 | None:intergenic |
| CAATGTACCCACTTGGTTAA+AGG | 0.324458 | 6_2:+71402641 | Msa0927210:CDS |
| GGATATGATGGTAACCCTTT+TGG | 0.329198 | 6_2:-71399207 | None:intergenic |
| TAGCATAGTAAAATCAATAT+TGG | 0.331896 | 6_2:+71398993 | Msa0927210:CDS |
| CTAAACAATTAGCTCTTTCA+AGG | 0.332301 | 6_2:-71399101 | None:intergenic |
| GCAGCATGTCTTAAACAAAA+AGG | 0.336756 | 6_2:+71399063 | Msa0927210:CDS |
| GTACGGCAAGACACCTGTTT+TGG | 0.342983 | 6_2:+71401507 | Msa0927210:CDS |
| ATATTTGGGAAATCAACTTT+TGG | 0.368442 | 6_2:+71401343 | Msa0927210:CDS |
| GGAAGTTGACAAAATTGCTT+TGG | 0.369775 | 6_2:-71399171 | None:intergenic |
| GCTGAATTTGATGTTGTTTG+TGG | 0.371638 | 6_2:+71399315 | Msa0927210:CDS |
| TCTTGCCACAACAAATATTT+GGG | 0.374850 | 6_2:+71401329 | Msa0927210:CDS |
| CCATTTGGGAACGGTTTCCT+TGG | 0.378581 | 6_2:-71403382 | None:intergenic |
| ATGAAGCCTTAATCTATCAT+AGG | 0.395063 | 6_2:-71399145 | None:intergenic |
| TGTTCCATCCCTTCAATTTG+AGG | 0.407826 | 6_2:-71399450 | None:intergenic |
| AAAGGAACAAGAATGCAAAA+TGG | 0.412076 | 6_2:+71398948 | Msa0927210:CDS |
| AATACAGTGGAATTTGTTGA+TGG | 0.421286 | 6_2:+71402570 | Msa0927210:CDS |
| CTCTTATGCCATTTCCAAAA+GGG | 0.422373 | 6_2:+71399193 | Msa0927210:CDS |
| CCTCTTATGCCATTTCCAAA+AGG | 0.423790 | 6_2:+71399192 | Msa0927210:CDS |
| CTAAGGATGGATGAGCATTA+TGG | 0.423920 | 6_2:-71399593 | None:intergenic |
| GTTTCAGGACCAATTATAGT+TGG | 0.432090 | 6_2:+71399015 | Msa0927210:CDS |
| TTCACTAAACGTGGGTTGCT+TGG | 0.432993 | 6_2:+71403439 | Msa0927210:CDS |
| TGTTGCTTTGTTGGATATGA+TGG | 0.433600 | 6_2:-71399219 | None:intergenic |
| CCAAGGAAACCGTTCCCAAA+TGG | 0.436893 | 6_2:+71403382 | Msa0927210:CDS |
| ACAGTAGCTCAAATCAAAAC+TGG | 0.443872 | 6_2:+71401538 | Msa0927210:CDS |
| GAAGGTTCCTCTCCCATTTG+AGG | 0.446496 | 6_2:+71403593 | Msa0927210:three_prime_UTR |
| GATGCTATCATTCTAGCTAC+TGG | 0.448404 | 6_2:+71402609 | Msa0927210:CDS |
| TAATGCTCATCCATCCTTAG+TGG | 0.456388 | 6_2:+71399596 | Msa0927210:CDS |
| GGGGCTCTTCTTGGTTATGA+AGG | 0.456889 | 6_2:+71403575 | Msa0927210:three_prime_UTR |
| CAGAAGATATTGAAACTAGC+TGG | 0.460121 | 6_2:+71403488 | Msa0927210:CDS |
| AAATGGATGGAAAGGAGAAA+AGG | 0.461272 | 6_2:+71403399 | Msa0927210:CDS |
| AAGGTTCCTCTCCCATTTGA+GGG | 0.463769 | 6_2:+71403594 | Msa0927210:three_prime_UTR |
| ATAGTTGGAGCTGGTCCCTC+AGG | 0.471984 | 6_2:+71399030 | Msa0927210:CDS |
| TATATACGTGTAGGTTTGCA+AGG | 0.483343 | 6_2:+71402527 | Msa0927210:intron |
| TCTAATTCATACAAGTGGCT+TGG | 0.484263 | 6_2:-71403524 | None:intergenic |
| AACTAGCTGGAAATCTGTTA+AGG | 0.485182 | 6_2:+71403501 | Msa0927210:CDS |
| CCTTTCCATCCATTTGGGAA+CGG | 0.497265 | 6_2:-71403391 | None:intergenic |
| GAAGTTGTGCCTCAAATTGA+AGG | 0.497449 | 6_2:+71399441 | Msa0927210:CDS |
| GAAGGGATGGAACAATTTCA+AGG | 0.500090 | 6_2:+71399459 | Msa0927210:CDS |
| AATGGATGGAAAGGAGAAAA+GGG | 0.503618 | 6_2:+71403400 | Msa0927210:CDS |
| ACTGTCCCAACATCCAAAAC+AGG | 0.506565 | 6_2:-71401520 | None:intergenic |
| ATCCTTAGTGGTTAGAGATA+CGG | 0.509760 | 6_2:+71399608 | Msa0927210:CDS |
| GCTCTTTCAAGGATTTGACT+TGG | 0.513216 | 6_2:-71399090 | None:intergenic |
| ATGAAGCACCTTTAACCAAG+TGG | 0.526407 | 6_2:-71402649 | None:intergenic |
| GGAATTTGTTGATGGGAAAG+TGG | 0.531587 | 6_2:+71402578 | Msa0927210:CDS |
| GGACCAATTATAGTTGGAGC+TGG | 0.539189 | 6_2:+71399021 | Msa0927210:CDS |
| GGCACATGATCATCAAAAGA+AGG | 0.539333 | 6_2:+71398969 | Msa0927210:CDS |
| CCGTTCCCAAATGGATGGAA+AGG | 0.540578 | 6_2:+71403391 | Msa0927210:CDS |
| GATTTCCCAAATATTTGTTG+TGG | 0.543307 | 6_2:-71401334 | None:intergenic |
| CACCGTATCTCTAACCACTA+AGG | 0.547811 | 6_2:-71399610 | None:intergenic |
| CATACTAGTTTGTATAAGAG+TGG | 0.551040 | 6_2:+71399492 | Msa0927210:CDS |
| GACATGTTTAGTGAGAAAGA+TGG | 0.552783 | 6_2:+71403355 | Msa0927210:CDS |
| GAAAAGGGACTATATGCTGT+TGG | 0.553034 | 6_2:+71403415 | Msa0927210:CDS |
| GTTCATCTATTGATGCAAAG+AGG | 0.556561 | 6_2:+71403461 | Msa0927210:CDS |
| GGAAACCGTTCCCAAATGGA+TGG | 0.562029 | 6_2:+71403386 | Msa0927210:CDS |
| TGTGCCTCAAATTGAAGGGA+TGG | 0.564740 | 6_2:+71399446 | Msa0927210:CDS |
| GCTGTTGGTTTCACTAAACG+TGG | 0.580511 | 6_2:+71403430 | Msa0927210:CDS |
| ATACAGTGGAATTTGTTGAT+GGG | 0.584603 | 6_2:+71402571 | Msa0927210:CDS |
| TGCTGCTGCTGCTAATCCTG+AGG | 0.591531 | 6_2:-71399046 | None:intergenic |
| GTATCTCTAACCACTAAGGA+TGG | 0.609523 | 6_2:-71399606 | None:intergenic |
| AAGTTGTGCCTCAAATTGAA+GGG | 0.631817 | 6_2:+71399442 | Msa0927210:CDS |
| TGAAGCACCTTTAACCAAGT+GGG | 0.640553 | 6_2:-71402648 | None:intergenic |
| ATATACGTGTAGGTTTGCAA+GGG | 0.641719 | 6_2:+71402528 | Msa0927210:intron |
| GTGTGGAAATTCAGGCATGG+AGG | 0.642809 | 6_2:+71399551 | Msa0927210:CDS |
| CTAATTGTTTAGCTTCAATG+TGG | 0.650137 | 6_2:+71399112 | Msa0927210:CDS |
| ACAGAAGCAATGTACCCACT+TGG | 0.652396 | 6_2:+71402634 | Msa0927210:CDS |
| GGGGTGTGGAAATTCAGGCA+TGG | 0.657648 | 6_2:+71399548 | Msa0927210:CDS |
| GCTGCTGCTGCTAATCCTGA+GGG | 0.658588 | 6_2:-71399045 | None:intergenic |
| AAATGGTTGATTGTTGCTAG+TGG | 0.673168 | 6_2:+71399405 | Msa0927210:CDS |
| CTGTTGGTTTCACTAAACGT+GGG | 0.687223 | 6_2:+71403431 | Msa0927210:CDS |
| ACGACTAGCACATAATACAG+TGG | 0.706423 | 6_2:+71402557 | Msa0927210:CDS |
| TGCTAGTGGTGAAAATGCTG+AGG | 0.712690 | 6_2:+71399419 | Msa0927210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTGAATATTTATGTAAA+TGG | + | chr6_2:71399388-71399407 | Msa0927210:CDS | 10.0% |
| !! | TTGTTTATATTAAAATGATA+AGG | + | chr6_2:71400342-71400361 | Msa0927210:intron | 10.0% |
| !!! | TAAAGAAAATAATCTTTTTA+GGG | - | chr6_2:71401268-71401287 | None:intergenic | 10.0% |
| !!! | TTAAAGAAAATAATCTTTTT+AGG | - | chr6_2:71401269-71401288 | None:intergenic | 10.0% |
| !! | AAAAACATTATTGTAAAATA+AGG | - | chr6_2:71402958-71402977 | None:intergenic | 10.0% |
| !! | CATTAAAAATCAATTATATA+AGG | + | chr6_2:71403109-71403128 | Msa0927210:intron | 10.0% |
| !! | AAAAAGAAAAAAGAAAAAAA+AGG | + | chr6_2:71403554-71403573 | Msa0927210:three_prime_UTR | 10.0% |
| !! | AAAAGAAAAAAGAAAAAAAA+GGG | + | chr6_2:71403555-71403574 | Msa0927210:three_prime_UTR | 10.0% |
| !!! | ACAATTTTTATCTTACTTAA+AGG | + | chr6_2:71399239-71399258 | Msa0927210:CDS | 15.0% |
| !!! | TTTGATATAAATCCTATTTT+TGG | + | chr6_2:71399276-71399295 | Msa0927210:CDS | 15.0% |
| !!! | TAAGAAAAAGTTAACTTTTT+AGG | + | chr6_2:71399878-71399897 | Msa0927210:intron | 15.0% |
| !!! | ATTAACTGTTTCTTATAATA+AGG | + | chr6_2:71399972-71399991 | Msa0927210:intron | 15.0% |
| !!! | TTTTTTATTTTTATTTGTGC+AGG | + | chr6_2:71401300-71401319 | Msa0927210:intron | 15.0% |
| !! | CTTCATATAAGAATTAATTA+TGG | + | chr6_2:71401877-71401896 | Msa0927210:intron | 15.0% |
| !! | TAGAATATTAAAAATCATAG+AGG | - | chr6_2:71402056-71402075 | None:intergenic | 15.0% |
| !! | TGTTTAGTTATTTATATAGA+GGG | - | chr6_2:71402125-71402144 | None:intergenic | 15.0% |
| !! | TTGTTTAGTTATTTATATAG+AGG | - | chr6_2:71402126-71402145 | None:intergenic | 15.0% |
| !!! | ACTTTTTTGATAATATGAAT+CGG | - | chr6_2:71402184-71402203 | None:intergenic | 15.0% |
| !! | TACATTATACTACTAAAAAA+AGG | + | chr6_2:71402292-71402311 | Msa0927210:intron | 15.0% |
| !!! | TTACATATAGTTGATAAATA+TGG | + | chr6_2:71402687-71402706 | Msa0927210:intron | 15.0% |
| !! | AAAGAAAAAAGAAAAAAAAG+GGG | + | chr6_2:71403556-71403575 | Msa0927210:three_prime_UTR | 15.0% |
| !! | TAGCATAGTAAAATCAATAT+TGG | + | chr6_2:71398993-71399012 | Msa0927210:CDS | 20.0% |
| !! | ACTCAAGAAATTATGAAAAA+TGG | + | chr6_2:71399354-71399373 | Msa0927210:CDS | 20.0% |
| !! | ATTAGAGACATCAAATTTAT+AGG | + | chr6_2:71399780-71399799 | Msa0927210:intron | 20.0% |
| !! | TTAGAGACATCAAATTTATA+GGG | + | chr6_2:71399781-71399800 | Msa0927210:intron | 20.0% |
| !!! | GTTAACTTTTTCTTATAACA+AGG | - | chr6_2:71399873-71399892 | None:intergenic | 20.0% |
| !!! | TTTTTAAATTAGACTGGTTT+AGG | - | chr6_2:71400148-71400167 | None:intergenic | 20.0% |
| !! | AAACCAGTCTAATTTAAAAA+TGG | + | chr6_2:71400148-71400167 | Msa0927210:intron | 20.0% |
| !! | GTAAATGATAAACAATTTAC+AGG | + | chr6_2:71400184-71400203 | Msa0927210:intron | 20.0% |
| !! | TAAGATAAGTACATTAAGTT+TGG | + | chr6_2:71400301-71400320 | Msa0927210:intron | 20.0% |
| !! | AAGAGATTTGATCTTTAATT+TGG | - | chr6_2:71400548-71400567 | None:intergenic | 20.0% |
| !!! | TATGGCAATTATTTCTTTTT+GGG | - | chr6_2:71400797-71400816 | None:intergenic | 20.0% |
| !!! | ATTAGCTTCTTCAAAAAAAA+TGG | + | chr6_2:71400967-71400986 | Msa0927210:intron | 20.0% |
| !!! | ATTTTGCTTATAAAAGTGAT+CGG | - | chr6_2:71401122-71401141 | None:intergenic | 20.0% |
| !! | TTCTTAAGATTTACTTCATT+TGG | - | chr6_2:71401209-71401228 | None:intergenic | 20.0% |
| !!! | TATTTTTTGTTGATTAAGAC+AGG | - | chr6_2:71401672-71401691 | None:intergenic | 20.0% |
| !! | GAGTTGAATAAAAAAAACTA+AGG | + | chr6_2:71401815-71401834 | Msa0927210:intron | 20.0% |
| !!! | GTTTTTTTAAAACTTTGTGT+AGG | + | chr6_2:71402314-71402333 | Msa0927210:intron | 20.0% |
| !! | TGATTATGAAGATGTAAAAT+TGG | - | chr6_2:71402406-71402425 | None:intergenic | 20.0% |
| !! | TATTAGACAAAATCTAATGA+TGG | - | chr6_2:71402499-71402518 | None:intergenic | 20.0% |
| !! | ATAAATATGGTAAATAGCAT+AGG | + | chr6_2:71402700-71402719 | Msa0927210:intron | 20.0% |
| !!! | TGTCTCTAGTTTTTTTTTTA+GGG | - | chr6_2:71402792-71402811 | None:intergenic | 20.0% |
| !!! | ATGTCTCTAGTTTTTTTTTT+AGG | - | chr6_2:71402793-71402812 | None:intergenic | 20.0% |
| !! | ACACTTAACAAAATTAAAGA+TGG | - | chr6_2:71402908-71402927 | None:intergenic | 20.0% |
| !! | GGATTGAAAAAAAATGAAAT+TGG | - | chr6_2:71402937-71402956 | None:intergenic | 20.0% |
| !!! | ATGTTTTTTCTATCTCTATT+TGG | + | chr6_2:71402970-71402989 | Msa0927210:intron | 20.0% |
| !! | TCTCACATAAAATAAAGATA+AGG | + | chr6_2:71403052-71403071 | Msa0927210:intron | 20.0% |
| !! | AAATCAATTATATAAGGATG+AGG | + | chr6_2:71403115-71403134 | Msa0927210:intron | 20.0% |
| !! | TGTTAATACAATATCAAACT+AGG | - | chr6_2:71403212-71403231 | None:intergenic | 20.0% |
| !! | ATTGAAATTCATTGTGATTA+GGG | + | chr6_2:71403328-71403347 | Msa0927210:intron | 20.0% |
| !! | ACTTGTATGAATTAGAAAAA+GGG | + | chr6_2:71403531-71403550 | Msa0927210:exon | 20.0% |
| !!! | GTAAAATCAATATTGGTTTC+AGG | + | chr6_2:71399000-71399019 | Msa0927210:CDS | 25.0% |
| ! | TCAAAACCTATGATAGATTA+AGG | + | chr6_2:71399139-71399158 | Msa0927210:CDS | 25.0% |
| !!! | GATAAAAATTGTTGCTTTGT+TGG | - | chr6_2:71399231-71399250 | None:intergenic | 25.0% |
| ! | TACAAACTAGTATGCAAAAT+TGG | - | chr6_2:71399486-71399505 | None:intergenic | 25.0% |
| ! | GTAAAAGAACACTTGAAAAT+CGG | - | chr6_2:71400025-71400044 | None:intergenic | 25.0% |
| !!! | TGTCCATTTTTAAATTAGAC+TGG | - | chr6_2:71400154-71400173 | None:intergenic | 25.0% |
| !!! | AAGATCCATTTGTTTTTCAA+AGG | + | chr6_2:71400372-71400391 | Msa0927210:intron | 25.0% |
| ! | AGCATGAAGAAAAAAAAAGA+AGG | + | chr6_2:71400603-71400622 | Msa0927210:intron | 25.0% |
| ! | AAAAAGAAGGAAATGTTAAC+CGG | + | chr6_2:71400616-71400635 | Msa0927210:intron | 25.0% |
| !!! | CTATGGCAATTATTTCTTTT+TGG | - | chr6_2:71400798-71400817 | None:intergenic | 25.0% |
| !! | TTTGCTTTAACAACCTTTTT+AGG | - | chr6_2:71400835-71400854 | None:intergenic | 25.0% |
| ! | AAAAAGGTTGTTAAAGCAAA+TGG | + | chr6_2:71400835-71400854 | Msa0927210:intron | 25.0% |
| !!! | AAATAATCTTTTTAGGGAAC+TGG | - | chr6_2:71401262-71401281 | None:intergenic | 25.0% |
| !! | ATATTTGGGAAATCAACTTT+TGG | + | chr6_2:71401343-71401362 | Msa0927210:CDS | 25.0% |
| !!! | TACAAGTTTTTAAGCTCTAA+AGG | - | chr6_2:71401490-71401509 | None:intergenic | 25.0% |
| ! | TTAGAGCTTAAAAACTTGTA+CGG | + | chr6_2:71401490-71401509 | Msa0927210:CDS | 25.0% |
| ! | AATCAAAACTGGCAAAATTA+AGG | + | chr6_2:71401549-71401568 | Msa0927210:CDS | 25.0% |
| !! | AATAAGATGAAAATCCCTTT+TGG | - | chr6_2:71401603-71401622 | None:intergenic | 25.0% |
| !! | ATCACAAATCATTTTCTCTT+TGG | - | chr6_2:71402236-71402255 | None:intergenic | 25.0% |
| !!! | ATATCTCTCTTTTTTTCTCT+TGG | + | chr6_2:71402457-71402476 | Msa0927210:intron | 25.0% |
| ! | ATCATCTAATATATACGTGT+AGG | + | chr6_2:71402518-71402537 | Msa0927210:intron | 25.0% |
| !! | AATATTACACTCTATCGATT+TGG | + | chr6_2:71403161-71403180 | Msa0927210:intron | 25.0% |
| !!! | ATATTACACTCTATCGATTT+GGG | + | chr6_2:71403162-71403181 | Msa0927210:intron | 25.0% |
| ! | GATTGAAATTCATTGTGATT+AGG | + | chr6_2:71403327-71403346 | Msa0927210:intron | 25.0% |
| !! | CTTTTTCTAATTCATACAAG+TGG | - | chr6_2:71403532-71403551 | None:intergenic | 25.0% |
| ! | CACTTGTATGAATTAGAAAA+AGG | + | chr6_2:71403530-71403549 | Msa0927210:exon | 25.0% |
| !!! | TTCTTTTTTTTCCCTCAAAT+GGG | - | chr6_2:71403608-71403627 | None:intergenic | 25.0% |
| AAAGGAACAAGAATGCAAAA+TGG | + | chr6_2:71398948-71398967 | Msa0927210:CDS | 30.0% | |
| ! | CTAAACAATTAGCTCTTTCA+AGG | - | chr6_2:71399104-71399123 | None:intergenic | 30.0% |
| ! | CTAATTGTTTAGCTTCAATG+TGG | + | chr6_2:71399112-71399131 | Msa0927210:CDS | 30.0% |
| ATGAAGCCTTAATCTATCAT+AGG | - | chr6_2:71399148-71399167 | None:intergenic | 30.0% | |
| !! | TTGATGTTGTTTGTGGATTT+TGG | + | chr6_2:71399322-71399341 | Msa0927210:CDS | 30.0% |
| ! | CATACTAGTTTGTATAAGAG+TGG | + | chr6_2:71399492-71399511 | Msa0927210:CDS | 30.0% |
| TTGAAATAGCCACACAAATT+TGG | + | chr6_2:71399706-71399725 | Msa0927210:intron | 30.0% | |
| !!! | CTTTAGTTCTTTTTAGTTCG+TGG | + | chr6_2:71399751-71399770 | Msa0927210:intron | 30.0% |
| ! | CTTTTTCTTATAACAAGGAC+CGG | - | chr6_2:71399868-71399887 | None:intergenic | 30.0% |
| AAAGAAGTTAGTTGTGATGA+CGG | - | chr6_2:71400271-71400290 | None:intergenic | 30.0% | |
| !! | CCATTTGTTTTTCAAAGGTA+CGG | + | chr6_2:71400377-71400396 | Msa0927210:intron | 30.0% |
| !! | TTTTAGTTATCCTGACACAA+AGG | - | chr6_2:71400583-71400602 | None:intergenic | 30.0% |
| CTGGTTAAGGAAACTAAAAA+AGG | - | chr6_2:71400749-71400768 | None:intergenic | 30.0% | |
| GTGTCTACAATTTCCTAAAA+AGG | + | chr6_2:71400819-71400838 | Msa0927210:intron | 30.0% | |
| AATTCTCTCAGATGTCAATT+GGG | + | chr6_2:71400936-71400955 | Msa0927210:intron | 30.0% | |
| TAACAAGTGTCTTAAACAAG+TGG | + | chr6_2:71400995-71401014 | Msa0927210:intron | 30.0% | |
| ATCTTGCCACAACAAATATT+TGG | + | chr6_2:71401328-71401347 | Msa0927210:CDS | 30.0% | |
| TCTTGCCACAACAAATATTT+GGG | + | chr6_2:71401329-71401348 | Msa0927210:CDS | 30.0% | |
| ! | GATTTCCCAAATATTTGTTG+TGG | - | chr6_2:71401337-71401356 | None:intergenic | 30.0% |
| !!! | CAACTTTTGGTTTATCTATG+TGG | + | chr6_2:71401356-71401375 | Msa0927210:CDS | 30.0% |
| TATCTATGTGGTTGCTTAAA+TGG | + | chr6_2:71401368-71401387 | Msa0927210:CDS | 30.0% | |
| CTAATGTCAGATCTTATTCT+TGG | + | chr6_2:71401424-71401443 | Msa0927210:CDS | 30.0% | |
| GGAATTGAAAGACCAAAAAT+TGG | + | chr6_2:71401463-71401482 | Msa0927210:CDS | 30.0% | |
| ACATACCAATCAAATCCAAA+AGG | + | chr6_2:71401585-71401604 | Msa0927210:intron | 30.0% | |
| CATACCAATCAAATCCAAAA+GGG | + | chr6_2:71401586-71401605 | Msa0927210:intron | 30.0% | |
| ! | AAATCCCTTTTGGATTTGAT+TGG | - | chr6_2:71401593-71401612 | None:intergenic | 30.0% |
| !!! | TTAATGTGTGTTTTGATCCA+CGG | + | chr6_2:71401701-71401720 | Msa0927210:intron | 30.0% |
| ! | AAAATTTCTGGATTTGTCAC+TGG | - | chr6_2:71401941-71401960 | None:intergenic | 30.0% |
| ! | TCCAGAAATTTTGAATAGTG+TGG | + | chr6_2:71401949-71401968 | Msa0927210:intron | 30.0% |
| ! | CCAGAAATTTTGAATAGTGT+GGG | + | chr6_2:71401950-71401969 | Msa0927210:intron | 30.0% |
| TAGTTGACAATTTGATCACA+TGG | - | chr6_2:71402268-71402287 | None:intergenic | 30.0% | |
| TTTGAATATTGTCGAGTTCA+TGG | - | chr6_2:71402373-71402392 | None:intergenic | 30.0% | |
| GATGTAAAATTGGTTATGAC+AGG | - | chr6_2:71402396-71402415 | None:intergenic | 30.0% | |
| !! | AATACAGTGGAATTTGTTGA+TGG | + | chr6_2:71402570-71402589 | Msa0927210:CDS | 30.0% |
| !! | ATACAGTGGAATTTGTTGAT+GGG | + | chr6_2:71402571-71402590 | Msa0927210:CDS | 30.0% |
| CATAGGAAAGAGTTGAATTA+AGG | + | chr6_2:71402717-71402736 | Msa0927210:intron | 30.0% | |
| !!! | GTTCTTTTTTTTCCCTCAAA+TGG | - | chr6_2:71403609-71403628 | None:intergenic | 30.0% |
| GTTTCAGGACCAATTATAGT+TGG | + | chr6_2:71399015-71399034 | Msa0927210:CDS | 35.0% | |
| GCAGCATGTCTTAAACAAAA+AGG | + | chr6_2:71399063-71399082 | Msa0927210:CDS | 35.0% | |
| GGAAGTTGACAAAATTGCTT+TGG | - | chr6_2:71399174-71399193 | None:intergenic | 35.0% | |
| ! | CTCTTATGCCATTTCCAAAA+GGG | + | chr6_2:71399193-71399212 | Msa0927210:CDS | 35.0% |
| !! | TGTTGCTTTGTTGGATATGA+TGG | - | chr6_2:71399222-71399241 | None:intergenic | 35.0% |
| !!! | TCCTATTTTTGGCAAACAAG+TGG | + | chr6_2:71399287-71399306 | Msa0927210:CDS | 35.0% |
| ACCACTTGTTTGCCAAAAAT+AGG | - | chr6_2:71399291-71399310 | None:intergenic | 35.0% | |
| ! | GCTGAATTTGATGTTGTTTG+TGG | + | chr6_2:71399315-71399334 | Msa0927210:CDS | 35.0% |
| AAATGGTTGATTGTTGCTAG+TGG | + | chr6_2:71399405-71399424 | Msa0927210:CDS | 35.0% | |
| AAGTTGTGCCTCAAATTGAA+GGG | + | chr6_2:71399442-71399461 | Msa0927210:CDS | 35.0% | |
| !! | TTGTGGGAAGAATGTTTTAG+TGG | + | chr6_2:71399524-71399543 | Msa0927210:CDS | 35.0% |
| ATCCTTAGTGGTTAGAGATA+CGG | + | chr6_2:71399608-71399627 | Msa0927210:CDS | 35.0% | |
| AAATAGCCACACAAATTTGG+AGG | + | chr6_2:71399709-71399728 | Msa0927210:intron | 35.0% | |
| AGAACACTTGAAAATCGGAA+AGG | - | chr6_2:71400020-71400039 | None:intergenic | 35.0% | |
| ! | CCGTACCTTTGAAAAACAAA+TGG | - | chr6_2:71400380-71400399 | None:intergenic | 35.0% |
| GAAAGTGAGAGAACAAAGAA+TGG | - | chr6_2:71400471-71400490 | None:intergenic | 35.0% | |
| CTTTGTTCTCTCACTTTCAT+TGG | + | chr6_2:71400473-71400492 | Msa0927210:intron | 35.0% | |
| !!! | TCTTTTTGGGTCTTGTTAAC+CGG | - | chr6_2:71400784-71400803 | None:intergenic | 35.0% |
| AGGAAATTGTAGACACACTA+TGG | - | chr6_2:71400815-71400834 | None:intergenic | 35.0% | |
| CAATTCTCTCAGATGTCAAT+TGG | + | chr6_2:71400935-71400954 | Msa0927210:intron | 35.0% | |
| TGCTTATAAAAGTGATCGGA+TGG | - | chr6_2:71401118-71401137 | None:intergenic | 35.0% | |
| ! | ATGGTTCTCTGTTCATTTTG+TGG | + | chr6_2:71401387-71401406 | Msa0927210:CDS | 35.0% |
| CTTGGAGATACATCTCAATT+TGG | + | chr6_2:71401442-71401461 | Msa0927210:CDS | 35.0% | |
| !!! | AGCTCTAAAGGACCAATTTT+TGG | - | chr6_2:71401478-71401497 | None:intergenic | 35.0% |
| ACAGTAGCTCAAATCAAAAC+TGG | + | chr6_2:71401538-71401557 | Msa0927210:CDS | 35.0% | |
| ! | AAAATAAACTTTTGCCACCG+TGG | - | chr6_2:71401721-71401740 | None:intergenic | 35.0% |
| CCCACACTATTCAAAATTTC+TGG | - | chr6_2:71401953-71401972 | None:intergenic | 35.0% | |
| TCATAGAGGACAACTATGAT+GGG | - | chr6_2:71402042-71402061 | None:intergenic | 35.0% | |
| ATCATAGAGGACAACTATGA+TGG | - | chr6_2:71402043-71402062 | None:intergenic | 35.0% | |
| AATCGGATGTGAAATCGAAT+AGG | - | chr6_2:71402167-71402186 | None:intergenic | 35.0% | |
| ATGCAAGTTAAAGCATGTGT+GGG | - | chr6_2:71402346-71402365 | None:intergenic | 35.0% | |
| AATATTGTCGAGTTCATGGA+CGG | - | chr6_2:71402369-71402388 | None:intergenic | 35.0% | |
| TATATACGTGTAGGTTTGCA+AGG | + | chr6_2:71402527-71402546 | Msa0927210:intron | 35.0% | |
| ATATACGTGTAGGTTTGCAA+GGG | + | chr6_2:71402528-71402547 | Msa0927210:intron | 35.0% | |
| GACATGTTTAGTGAGAAAGA+TGG | + | chr6_2:71403355-71403374 | Msa0927210:CDS | 35.0% | |
| TTTCTCCTTTCCATCCATTT+GGG | - | chr6_2:71403399-71403418 | None:intergenic | 35.0% | |
| ! | TTTTCTCCTTTCCATCCATT+TGG | - | chr6_2:71403400-71403419 | None:intergenic | 35.0% |
| AAATGGATGGAAAGGAGAAA+AGG | + | chr6_2:71403399-71403418 | Msa0927210:CDS | 35.0% | |
| AATGGATGGAAAGGAGAAAA+GGG | + | chr6_2:71403400-71403419 | Msa0927210:CDS | 35.0% | |
| GTTCATCTATTGATGCAAAG+AGG | + | chr6_2:71403461-71403480 | Msa0927210:CDS | 35.0% | |
| CAGAAGATATTGAAACTAGC+TGG | + | chr6_2:71403488-71403507 | Msa0927210:CDS | 35.0% | |
| AACTAGCTGGAAATCTGTTA+AGG | + | chr6_2:71403501-71403520 | Msa0927210:CDS | 35.0% | |
| TCTAATTCATACAAGTGGCT+TGG | - | chr6_2:71403527-71403546 | None:intergenic | 35.0% | |
| GGCACATGATCATCAAAAGA+AGG | + | chr6_2:71398969-71398988 | Msa0927210:CDS | 40.0% | |
| GCTCTTTCAAGGATTTGACT+TGG | - | chr6_2:71399093-71399112 | None:intergenic | 40.0% | |
| !! | CCTTTTGGAAATGGCATAAG+AGG | - | chr6_2:71399195-71399214 | None:intergenic | 40.0% |
| ! | CCTCTTATGCCATTTCCAAA+AGG | + | chr6_2:71399192-71399211 | Msa0927210:CDS | 40.0% |
| !! | GATGGTAACCCTTTTGGAAA+TGG | - | chr6_2:71399204-71399223 | None:intergenic | 40.0% |
| ! | GGATATGATGGTAACCCTTT+TGG | - | chr6_2:71399210-71399229 | None:intergenic | 40.0% |
| GAAGTTGTGCCTCAAATTGA+AGG | + | chr6_2:71399441-71399460 | Msa0927210:CDS | 40.0% | |
| TGTTCCATCCCTTCAATTTG+AGG | - | chr6_2:71399453-71399472 | None:intergenic | 40.0% | |
| GAAGGGATGGAACAATTTCA+AGG | + | chr6_2:71399459-71399478 | Msa0927210:CDS | 40.0% | |
| ! | AAGAGTGGTAGCATGTTTTG+TGG | + | chr6_2:71399507-71399526 | Msa0927210:CDS | 40.0% |
| ! | AGAGTGGTAGCATGTTTTGT+GGG | + | chr6_2:71399508-71399527 | Msa0927210:CDS | 40.0% |
| !!! | TGGGAAGAATGTTTTAGTGG+TGG | + | chr6_2:71399527-71399546 | Msa0927210:CDS | 40.0% |
| !!! | GGGAAGAATGTTTTAGTGGT+GGG | + | chr6_2:71399528-71399547 | Msa0927210:CDS | 40.0% |
| !!! | GGAAGAATGTTTTAGTGGTG+GGG | + | chr6_2:71399529-71399548 | Msa0927210:CDS | 40.0% |
| CTAAGGATGGATGAGCATTA+TGG | - | chr6_2:71399596-71399615 | None:intergenic | 40.0% | |
| TAATGCTCATCCATCCTTAG+TGG | + | chr6_2:71399596-71399615 | Msa0927210:CDS | 40.0% | |
| GTATCTCTAACCACTAAGGA+TGG | - | chr6_2:71399609-71399628 | None:intergenic | 40.0% | |
| TTTCAGCCTCCAAATTTGTG+TGG | - | chr6_2:71399718-71399737 | None:intergenic | 40.0% | |
| GCATAAAATCATACTCCCTC+CGG | + | chr6_2:71399846-71399865 | Msa0927210:intron | 40.0% | |
| TTCTTATAACAAGGACCGGA+GGG | - | chr6_2:71399864-71399883 | None:intergenic | 40.0% | |
| TTTCTTATAACAAGGACCGG+AGG | - | chr6_2:71399865-71399884 | None:intergenic | 40.0% | |
| AAGAAGGAAATGTTAACCGG+TGG | + | chr6_2:71400619-71400638 | Msa0927210:intron | 40.0% | |
| TTGGCAACGTGGTATTTGTT+TGG | + | chr6_2:71400876-71400895 | Msa0927210:intron | 40.0% | |
| ! | GTGGTATTTGTTTGGAGTCT+GGG | + | chr6_2:71400884-71400903 | Msa0927210:intron | 40.0% |
| !! | AAGACACCTGTTTTGGATGT+TGG | + | chr6_2:71401514-71401533 | Msa0927210:CDS | 40.0% |
| !! | AGACACCTGTTTTGGATGTT+GGG | + | chr6_2:71401515-71401534 | Msa0927210:CDS | 40.0% |
| !! | TCACTGGTCAAGTTGAATTG+TGG | - | chr6_2:71401925-71401944 | None:intergenic | 40.0% |
| GAAATCGAATAGGAGATGAC+TGG | - | chr6_2:71402157-71402176 | None:intergenic | 40.0% | |
| GATGCAAGTTAAAGCATGTG+TGG | - | chr6_2:71402347-71402366 | None:intergenic | 40.0% | |
| ACGACTAGCACATAATACAG+TGG | + | chr6_2:71402557-71402576 | Msa0927210:CDS | 40.0% | |
| !! | GGAATTTGTTGATGGGAAAG+TGG | + | chr6_2:71402578-71402597 | Msa0927210:CDS | 40.0% |
| ! | GATGCTATCATTCTAGCTAC+TGG | + | chr6_2:71402609-71402628 | Msa0927210:CDS | 40.0% |
| CAATGTACCCACTTGGTTAA+AGG | + | chr6_2:71402641-71402660 | Msa0927210:CDS | 40.0% | |
| ! | TGAAGCACCTTTAACCAAGT+GGG | - | chr6_2:71402651-71402670 | None:intergenic | 40.0% |
| ! | ATGAAGCACCTTTAACCAAG+TGG | - | chr6_2:71402652-71402671 | None:intergenic | 40.0% |
| GCGTGGATATAAATCATAGG+CGG | - | chr6_2:71403188-71403207 | None:intergenic | 40.0% | |
| GGTGCGTGGATATAAATCAT+AGG | - | chr6_2:71403191-71403210 | None:intergenic | 40.0% | |
| ACAATATCAAACTAGGTGCG+TGG | - | chr6_2:71403205-71403224 | None:intergenic | 40.0% | |
| ! | GTGAGAAAGATGGTTTTCCA+AGG | + | chr6_2:71403365-71403384 | Msa0927210:CDS | 40.0% |
| GAAAAGGGACTATATGCTGT+TGG | + | chr6_2:71403415-71403434 | Msa0927210:CDS | 40.0% | |
| !! | CTGTTGGTTTCACTAAACGT+GGG | + | chr6_2:71403431-71403450 | Msa0927210:CDS | 40.0% |
| GAAAAAAAAGGGGCTCTTCT+TGG | + | chr6_2:71403566-71403585 | Msa0927210:three_prime_UTR | 40.0% | |
| !!! | TTTTTTCCCTCAAATGGGAG+AGG | - | chr6_2:71403603-71403622 | None:intergenic | 40.0% |
| GGACCAATTATAGTTGGAGC+TGG | + | chr6_2:71399021-71399040 | Msa0927210:CDS | 45.0% | |
| GGACCAGCTCCAACTATAAT+TGG | - | chr6_2:71399027-71399046 | None:intergenic | 45.0% | |
| TGCTAGTGGTGAAAATGCTG+AGG | + | chr6_2:71399419-71399438 | Msa0927210:CDS | 45.0% | |
| TGTGCCTCAAATTGAAGGGA+TGG | + | chr6_2:71399446-71399465 | Msa0927210:CDS | 45.0% | |
| !!! | AATGTTTTAGTGGTGGGGTG+TGG | + | chr6_2:71399534-71399553 | Msa0927210:CDS | 45.0% |
| ! | TTCAGGCATGGAGGTTTGTT+TGG | + | chr6_2:71399560-71399579 | Msa0927210:CDS | 45.0% |
| CACCGTATCTCTAACCACTA+AGG | - | chr6_2:71399613-71399632 | None:intergenic | 45.0% | |
| TGATTTCTTAACCAGTGCCC+CGG | - | chr6_2:71400647-71400666 | None:intergenic | 45.0% | |
| TAGTTTCCTTAACCAGTGCC+CGG | + | chr6_2:71400753-71400772 | Msa0927210:intron | 45.0% | |
| ! | CGTGGTATTTGTTTGGAGTC+TGG | + | chr6_2:71400883-71400902 | Msa0927210:intron | 45.0% |
| GTGCTCTTTCTCGAAGTCTT+AGG | + | chr6_2:71400910-71400929 | Msa0927210:intron | 45.0% | |
| ACTGTCCCAACATCCAAAAC+AGG | - | chr6_2:71401523-71401542 | None:intergenic | 45.0% | |
| !!! | ATGTGTGTTTTGATCCACGG+TGG | + | chr6_2:71401704-71401723 | Msa0927210:intron | 45.0% |
| ACAGAAGCAATGTACCCACT+TGG | + | chr6_2:71402634-71402653 | Msa0927210:CDS | 45.0% | |
| CCTTTCCATCCATTTGGGAA+CGG | - | chr6_2:71403394-71403413 | None:intergenic | 45.0% | |
| !! | GCTGTTGGTTTCACTAAACG+TGG | + | chr6_2:71403430-71403449 | Msa0927210:CDS | 45.0% |
| ! | TTCACTAAACGTGGGTTGCT+TGG | + | chr6_2:71403439-71403458 | Msa0927210:CDS | 45.0% |
| AAGGTTCCTCTCCCATTTGA+GGG | + | chr6_2:71403594-71403613 | Msa0927210:three_prime_UTR | 45.0% | |
| GTGTGGAAATTCAGGCATGG+AGG | + | chr6_2:71399551-71399570 | Msa0927210:CDS | 50.0% | |
| CTGCAAAGAGCCTTTGTGTC+AGG | + | chr6_2:71400570-71400589 | Msa0927210:intron | 50.0% | |
| GAAATGTTAACCGGTGGCTC+CGG | + | chr6_2:71400625-71400644 | Msa0927210:intron | 50.0% | |
| AAATGTTAACCGGTGGCTCC+GGG | + | chr6_2:71400626-71400645 | Msa0927210:intron | 50.0% | |
| AGTTTCCTTAACCAGTGCCC+GGG | + | chr6_2:71400754-71400773 | Msa0927210:intron | 50.0% | |
| ! | TCTTGTTAACCGGTTTCCCC+GGG | - | chr6_2:71400774-71400793 | None:intergenic | 50.0% |
| ! | GTCTTGTTAACCGGTTTCCC+CGG | - | chr6_2:71400775-71400794 | None:intergenic | 50.0% |
| GTCTCTTAACCCACTTGCGT+TGG | + | chr6_2:71400857-71400876 | Msa0927210:intron | 50.0% | |
| ! | GTACGGCAAGACACCTGTTT+TGG | + | chr6_2:71401507-71401526 | Msa0927210:CDS | 50.0% |
| CCATTTGGGAACGGTTTCCT+TGG | - | chr6_2:71403385-71403404 | None:intergenic | 50.0% | |
| CCAAGGAAACCGTTCCCAAA+TGG | + | chr6_2:71403382-71403401 | Msa0927210:CDS | 50.0% | |
| GGAAACCGTTCCCAAATGGA+TGG | + | chr6_2:71403386-71403405 | Msa0927210:CDS | 50.0% | |
| CCGTTCCCAAATGGATGGAA+AGG | + | chr6_2:71403391-71403410 | Msa0927210:CDS | 50.0% | |
| GGGGCTCTTCTTGGTTATGA+AGG | + | chr6_2:71403575-71403594 | Msa0927210:three_prime_UTR | 50.0% | |
| GAAGGTTCCTCTCCCATTTG+AGG | + | chr6_2:71403593-71403612 | Msa0927210:three_prime_UTR | 50.0% | |
| ATAGTTGGAGCTGGTCCCTC+AGG | + | chr6_2:71399030-71399049 | Msa0927210:CDS | 55.0% | |
| GCTGCTGCTGCTAATCCTGA+GGG | - | chr6_2:71399048-71399067 | None:intergenic | 55.0% | |
| TGCTGCTGCTGCTAATCCTG+AGG | - | chr6_2:71399049-71399068 | None:intergenic | 55.0% | |
| ! | GTGGTGGGGTGTGGAAATTC+AGG | + | chr6_2:71399543-71399562 | Msa0927210:CDS | 55.0% |
| GGGGTGTGGAAATTCAGGCA+TGG | + | chr6_2:71399548-71399567 | Msa0927210:CDS | 55.0% | |
| AATGTTAACCGGTGGCTCCG+GGG | + | chr6_2:71400627-71400646 | Msa0927210:intron | 55.0% | |
| GTTTCCTTAACCAGTGCCCG+GGG | + | chr6_2:71400755-71400774 | Msa0927210:intron | 55.0% | |
| ACCACGTTGCCAACGCAAGT+GGG | - | chr6_2:71400869-71400888 | None:intergenic | 55.0% | |
| TACCACGTTGCCAACGCAAG+TGG | - | chr6_2:71400870-71400889 | None:intergenic | 55.0% | |
| !! | GTTTCCCCGGGCACTGGTTA+AGG | - | chr6_2:71400762-71400781 | None:intergenic | 60.0% |
| TAACCAGTGCCCGGGGAAAC+CGG | + | chr6_2:71400762-71400781 | Msa0927210:intron | 60.0% | |
| ! | ACCCACTTGCGTTGGCAACG+TGG | + | chr6_2:71400865-71400884 | Msa0927210:intron | 60.0% |
| ! | TAACCGGTTTCCCCGGGCAC+TGG | - | chr6_2:71400768-71400787 | None:intergenic | 65.0% |
| AACCAGTGCCCCGGAGCCAC+CGG | - | chr6_2:71400638-71400657 | None:intergenic | 70.0% | |
| AACCGGTGGCTCCGGGGCAC+TGG | + | chr6_2:71400633-71400652 | Msa0927210:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 71398937 | 71403650 | 71398937 | ID=Msa0927210;Name=Msa0927210 |
| chr6_2 | mRNA | 71398937 | 71403650 | 71398937 | ID=Msa0927210-mRNA-1;Parent=Msa0927210;Name=Msa0927210-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.75|1|1|1|4|110|418 |
| chr6_2 | exon | 71398937 | 71399629 | 71398937 | ID=Msa0927210-mRNA-1:exon:11875;Parent=Msa0927210-mRNA-1 |
| chr6_2 | exon | 71401322 | 71401570 | 71401322 | ID=Msa0927210-mRNA-1:exon:11876;Parent=Msa0927210-mRNA-1 |
| chr6_2 | exon | 71402540 | 71402662 | 71402540 | ID=Msa0927210-mRNA-1:exon:11877;Parent=Msa0927210-mRNA-1 |
| chr6_2 | exon | 71403349 | 71403650 | 71403349 | ID=Msa0927210-mRNA-1:exon:11878;Parent=Msa0927210-mRNA-1 |
| chr6_2 | CDS | 71398937 | 71399629 | 71398937 | ID=Msa0927210-mRNA-1:cds;Parent=Msa0927210-mRNA-1 |
| chr6_2 | CDS | 71401322 | 71401570 | 71401322 | ID=Msa0927210-mRNA-1:cds;Parent=Msa0927210-mRNA-1 |
| chr6_2 | CDS | 71402540 | 71402662 | 71402540 | ID=Msa0927210-mRNA-1:cds;Parent=Msa0927210-mRNA-1 |
| chr6_2 | CDS | 71403349 | 71403540 | 71403349 | ID=Msa0927210-mRNA-1:cds;Parent=Msa0927210-mRNA-1 |
| chr6_2 | three_prime_UTR | 71403541 | 71403650 | 71403541 | ID=Msa0927210-mRNA-1:three_prime_utr;Parent=Msa0927210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
