Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964700 | XP_013453101.2 | 97.608 | 418 | 10 | 0 | 1 | 418 | 3 | 420 | 0.0 | 844 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964700 | sp|Q9SVQ1|YUC2_ARATH | 65.025 | 406 | 137 | 3 | 1 | 406 | 1 | 401 | 0.0 | 558 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022550 | Msa0964700 | 0.804889 | 1.739406e-49 | -8.615850e-47 |
| Msa0317730 | Msa0964700 | 0.803735 | 3.024986e-49 | -8.615850e-47 |
| Msa0899660 | Msa0964700 | 0.838505 | 2.764040e-57 | -8.615850e-47 |
| Msa0927210 | Msa0964700 | 0.861408 | 1.048056e-63 | -8.615850e-47 |
| Msa0964700 | Msa1024740 | 0.823670 | 1.222324e-53 | -8.615850e-47 |
| Msa0964700 | Msa1152510 | 0.807185 | 5.719215e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964700 | MtrunA17_Chr6g0485621 | 97.608 | 418 | 10 | 0 | 1 | 418 | 3 | 420 | 0.0 | 844 |
| Msa0964700 | MtrunA17_Chr1g0147221 | 65.000 | 420 | 132 | 3 | 3 | 411 | 4 | 419 | 0.0 | 568 |
| Msa0964700 | MtrunA17_Chr3g0139441 | 65.238 | 420 | 134 | 3 | 1 | 411 | 1 | 417 | 0.0 | 565 |
| Msa0964700 | MtrunA17_Chr1g0148801 | 60.660 | 394 | 147 | 3 | 22 | 415 | 8 | 393 | 0.0 | 516 |
| Msa0964700 | MtrunA17_Chr1g0182991 | 59.296 | 398 | 155 | 4 | 14 | 410 | 9 | 400 | 1.84e-176 | 499 |
| Msa0964700 | MtrunA17_Chr1g0169111 | 58.247 | 388 | 160 | 2 | 23 | 410 | 95 | 480 | 2.25e-175 | 499 |
| Msa0964700 | MtrunA17_Chr7g0262591 | 56.784 | 398 | 160 | 4 | 14 | 410 | 9 | 395 | 4.28e-169 | 480 |
| Msa0964700 | MtrunA17_Chr7g0262471 | 54.777 | 314 | 131 | 3 | 98 | 410 | 213 | 516 | 5.62e-122 | 364 |
| Msa0964700 | MtrunA17_Chr8g0350371 | 43.799 | 379 | 204 | 3 | 31 | 408 | 7 | 377 | 1.15e-117 | 348 |
| Msa0964700 | MtrunA17_Chr7g0268611 | 44.180 | 378 | 202 | 4 | 31 | 407 | 9 | 378 | 1.31e-117 | 348 |
| Msa0964700 | MtrunA17_Chr5g0412881 | 45.407 | 381 | 197 | 4 | 31 | 409 | 7 | 378 | 4.48e-116 | 344 |
| Msa0964700 | MtrunA17_Chr7g0268621 | 46.950 | 377 | 189 | 6 | 31 | 405 | 7 | 374 | 2.16e-115 | 342 |
| Msa0964700 | MtrunA17_Chr3g0125701 | 43.229 | 384 | 209 | 3 | 31 | 413 | 8 | 383 | 3.67e-111 | 332 |
| Msa0964700 | MtrunA17_Chr3g0125711 | 43.490 | 384 | 208 | 3 | 31 | 413 | 8 | 383 | 4.95e-111 | 332 |
| Msa0964700 | MtrunA17_Chr3g0125691 | 42.969 | 384 | 210 | 3 | 31 | 413 | 8 | 383 | 1.14e-109 | 328 |
| Msa0964700 | MtrunA17_Chr4g0025641 | 45.545 | 202 | 107 | 1 | 31 | 232 | 17 | 215 | 1.62e-59 | 194 |
| Msa0964700 | MtrunA17_Chr4g0025651 | 44.785 | 163 | 88 | 2 | 247 | 408 | 11 | 172 | 3.96e-40 | 142 |
| Msa0964700 | MtrunA17_Chr3g0129991 | 41.463 | 123 | 67 | 2 | 88 | 209 | 1 | 119 | 1.21e-26 | 103 |
| Msa0964700 | MtrunA17_Chr3g0091441 | 24.658 | 219 | 129 | 8 | 32 | 217 | 15 | 230 | 5.81e-13 | 70.5 |
| Msa0964700 | MtrunA17_Chr8g0352461 | 25.352 | 213 | 127 | 7 | 32 | 218 | 6 | 212 | 4.33e-12 | 67.4 |
| Msa0964700 | MtrunA17_Chr8g0352481 | 25.822 | 213 | 125 | 7 | 32 | 218 | 6 | 211 | 4.51e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964700 | AT4G13260.1 | 65.025 | 406 | 137 | 3 | 1 | 406 | 1 | 401 | 0.0 | 558 |
| Msa0964700 | AT5G25620.1 | 63.043 | 414 | 144 | 3 | 1 | 410 | 1 | 409 | 0.0 | 550 |
| Msa0964700 | AT5G25620.2 | 63.043 | 414 | 144 | 3 | 1 | 410 | 1 | 409 | 0.0 | 550 |
| Msa0964700 | AT5G11320.1 | 58.673 | 392 | 152 | 2 | 18 | 409 | 5 | 386 | 6.06e-176 | 498 |
| Msa0964700 | AT1G04610.1 | 58.763 | 388 | 159 | 1 | 23 | 410 | 30 | 416 | 4.77e-173 | 491 |
| Msa0964700 | AT4G32540.1 | 56.000 | 400 | 166 | 3 | 12 | 410 | 3 | 393 | 1.87e-168 | 479 |
| Msa0964700 | AT4G32540.2 | 55.970 | 402 | 165 | 4 | 12 | 410 | 3 | 395 | 4.81e-167 | 475 |
| Msa0964700 | AT5G43890.1 | 56.041 | 389 | 167 | 3 | 23 | 410 | 18 | 403 | 2.07e-166 | 474 |
| Msa0964700 | AT1G04180.1 | 56.298 | 389 | 163 | 4 | 23 | 410 | 18 | 400 | 6.83e-166 | 472 |
| Msa0964700 | AT4G28720.1 | 54.430 | 395 | 177 | 3 | 23 | 416 | 18 | 410 | 7.61e-166 | 473 |
| Msa0964700 | AT2G33230.1 | 57.732 | 388 | 162 | 1 | 23 | 410 | 25 | 410 | 4.04e-165 | 471 |
| Msa0964700 | AT5G11320.2 | 58.284 | 338 | 132 | 1 | 18 | 355 | 5 | 333 | 2.67e-149 | 428 |
| Msa0964700 | AT4G13260.2 | 61.587 | 315 | 116 | 3 | 1 | 315 | 1 | 310 | 1.41e-143 | 411 |
| Msa0964700 | AT4G13260.3 | 66.781 | 292 | 94 | 2 | 116 | 407 | 11 | 299 | 3.88e-141 | 405 |
| Msa0964700 | AT1G21430.1 | 46.316 | 380 | 190 | 6 | 31 | 407 | 10 | 378 | 1.69e-120 | 356 |
| Msa0964700 | AT1G48910.1 | 43.229 | 384 | 209 | 3 | 31 | 413 | 6 | 381 | 1.09e-116 | 346 |
| Msa0964700 | AT1G19250.1 | 23.238 | 383 | 209 | 15 | 32 | 346 | 15 | 380 | 3.13e-14 | 74.7 |
| Msa0964700 | AT5G61290.1 | 26.941 | 219 | 127 | 6 | 32 | 219 | 18 | 234 | 5.09e-14 | 73.9 |
| Msa0964700 | AT1G65860.1 | 23.744 | 219 | 126 | 6 | 32 | 218 | 15 | 224 | 3.21e-13 | 71.6 |
| Msa0964700 | AT5G45180.1 | 23.380 | 355 | 203 | 15 | 32 | 346 | 15 | 340 | 1.18e-12 | 69.7 |
| Msa0964700 | AT1G62560.2 | 22.222 | 216 | 134 | 5 | 32 | 218 | 15 | 225 | 1.83e-12 | 68.9 |
| Msa0964700 | AT1G62560.1 | 22.222 | 216 | 134 | 5 | 32 | 218 | 15 | 225 | 1.94e-12 | 69.3 |
Find 86 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCTATGTGGTTGCTTAAA+TGG | 0.146621 | 6_3:-91608014 | Msa0964700:CDS |
| ATCTTGCCACAACAAATATT+TGG | 0.151089 | 6_3:-91608054 | Msa0964700:CDS |
| TTGATGTTGTTTGTGGATTT+TGG | 0.180380 | 6_3:-91609911 | Msa0964700:CDS |
| TTATTGAATATTTATGTAAA+TGG | 0.192064 | 6_3:-91609845 | Msa0964700:CDS |
| CTTGGAGATACATCTCAATT+TGG | 0.240393 | 6_3:-91607940 | Msa0964700:CDS |
| GTAAAATCAATATTGGTTTC+AGG | 0.248308 | 6_3:-91610233 | Msa0964700:CDS |
| CACTTGTATGAATTAGAAAA+AGG | 0.264258 | 6_3:-91605847 | Msa0964700:exon |
| AATCAAAACTGGCAAAATTA+AGG | 0.280803 | 6_3:-91607833 | Msa0964700:intron |
| CATGTTCATGGACTACTTAA+AGG | 0.300074 | 6_3:-91610303 | None:intergenic |
| TCAAAACCTATGATAGATTA+AGG | 0.300700 | 6_3:-91610094 | Msa0964700:CDS |
| TTCAGGCATGGAGGTTTGTT+TGG | 0.304733 | 6_3:-91609673 | Msa0964700:CDS |
| GTGGTGGGGTGTGGAAATTC+AGG | 0.309535 | 6_3:-91609690 | Msa0964700:CDS |
| GGACCAGCTCCAACTATAAT+TGG | 0.317043 | 6_3:+91610209 | None:intergenic |
| TACAAACTAGTATGCAAAAT+TGG | 0.319837 | 6_3:+91609750 | None:intergenic |
| TTTCTCCTTTCCATCCATTT+GGG | 0.321282 | 6_3:+91605981 | None:intergenic |
| CAATGTACCCACTTGGTTAA+AGG | 0.324458 | 6_3:-91606736 | Msa0964700:intron |
| GGATATGATGGTAACCCTTT+TGG | 0.329198 | 6_3:+91610026 | None:intergenic |
| TAGCATAGTAAAATCAATAT+TGG | 0.331896 | 6_3:-91610240 | Msa0964700:CDS |
| CTAAACAATTAGCTCTTTCA+AGG | 0.332301 | 6_3:+91610132 | None:intergenic |
| GTACGGCAAGACACCTGTTT+TGG | 0.342983 | 6_3:-91607875 | Msa0964700:CDS |
| GCAGCATGTCTTAAACAAAA+AGG | 0.354149 | 6_3:-91610170 | Msa0964700:CDS |
| ATATTTGGGAAATCAACTTT+TGG | 0.368442 | 6_3:-91608039 | Msa0964700:CDS |
| GGAAGTTGACAAAATTGCTT+TGG | 0.369775 | 6_3:+91610062 | None:intergenic |
| GCTGAATTTGATGTTGTTTG+TGG | 0.371638 | 6_3:-91609918 | Msa0964700:CDS |
| TCTTGCCACAACAAATATTT+GGG | 0.374850 | 6_3:-91608053 | Msa0964700:CDS |
| CCATTTGGGAACGGTTTCCT+TGG | 0.378581 | 6_3:+91605995 | None:intergenic |
| ATGAAGCCTTAATCTATCAT+AGG | 0.395063 | 6_3:+91610088 | None:intergenic |
| TGTTCCATCCCTTCAATTTG+AGG | 0.407826 | 6_3:+91609783 | None:intergenic |
| AAAGGAACAAGAATGCAAAA+TGG | 0.412076 | 6_3:-91610285 | Msa0964700:CDS |
| AATACAGTGGAATTTGTTGA+TGG | 0.421286 | 6_3:-91606807 | Msa0964700:CDS |
| CTCTTATGCCATTTCCAAAA+GGG | 0.422373 | 6_3:-91610040 | Msa0964700:CDS |
| CCTCTTATGCCATTTCCAAA+AGG | 0.423790 | 6_3:-91610041 | Msa0964700:CDS |
| CTAAGGATGGATGAGCATTA+TGG | 0.423920 | 6_3:+91609640 | None:intergenic |
| GTTTCAGGACCAATTATAGT+TGG | 0.432090 | 6_3:-91610218 | Msa0964700:CDS |
| TTCACTAAACGTGGGTTGCT+TGG | 0.432993 | 6_3:-91605938 | Msa0964700:CDS |
| TGTTGCTTTGTTGGATATGA+TGG | 0.433600 | 6_3:+91610014 | None:intergenic |
| CCAAGGAAACCGTTCCCAAA+TGG | 0.436893 | 6_3:-91605995 | Msa0964700:CDS |
| ACAGTAGCTCAAATCAAAAC+TGG | 0.443872 | 6_3:-91607844 | Msa0964700:CDS |
| GAAGGTTCCTCTCCCATTTG+AGG | 0.446496 | 6_3:-91605782 | Msa0964700:three_prime_UTR |
| GATGCTATCATTCTAGCTAC+TGG | 0.448404 | 6_3:-91606768 | Msa0964700:CDS |
| TAATGCTCATCCATCCTTAG+TGG | 0.456388 | 6_3:-91609637 | Msa0964700:CDS |
| GGGGCTCTTCTTGGTTATGA+AGG | 0.456889 | 6_3:-91605800 | Msa0964700:three_prime_UTR |
| CAGAAGATATTGAAACTAGC+TGG | 0.460121 | 6_3:-91605889 | Msa0964700:CDS |
| AAATGGATGGAAAGGAGAAA+AGG | 0.461272 | 6_3:-91605978 | Msa0964700:CDS |
| AAGGTTCCTCTCCCATTTGA+GGG | 0.463769 | 6_3:-91605781 | Msa0964700:three_prime_UTR |
| ATAGTTGGAGCTGGTCCCTC+AGG | 0.471984 | 6_3:-91610203 | Msa0964700:CDS |
| TATATACGTGTAGGTTTGCA+AGG | 0.483343 | 6_3:-91606850 | Msa0964700:intron |
| TCTAATTCATACAAGTGGCT+TGG | 0.484263 | 6_3:+91605853 | None:intergenic |
| AACTAGCTGGAAATCTGTTA+AGG | 0.485182 | 6_3:-91605876 | Msa0964700:CDS |
| CCTTTCCATCCATTTGGGAA+CGG | 0.497265 | 6_3:+91605986 | None:intergenic |
| GAAGTTGTGCCTCAAATTGA+AGG | 0.497449 | 6_3:-91609792 | Msa0964700:CDS |
| GAAGGGATGGAACAATTTCA+AGG | 0.500090 | 6_3:-91609774 | Msa0964700:CDS |
| AATGGATGGAAAGGAGAAAA+GGG | 0.503618 | 6_3:-91605977 | Msa0964700:CDS |
| ACTGTCCCAACATCCAAAAC+AGG | 0.506565 | 6_3:+91607862 | None:intergenic |
| ATCCTTAGTGGTTAGAGATA+CGG | 0.509760 | 6_3:-91609625 | Msa0964700:intron |
| GCTCTTTCAAGGATTTGACT+TGG | 0.513216 | 6_3:+91610143 | None:intergenic |
| AGCTGGTCCCTCAGGATTAG+CGG | 0.514671 | 6_3:-91610195 | Msa0964700:CDS |
| ATGAAGCACCTTTAACCAAG+TGG | 0.526407 | 6_3:+91606728 | None:intergenic |
| GGAATTTGTTGATGGGAAAG+TGG | 0.531587 | 6_3:-91606799 | Msa0964700:CDS |
| GGACCAATTATAGTTGGAGC+TGG | 0.539189 | 6_3:-91610212 | Msa0964700:CDS |
| GGCACATGATCATCAAAAGA+AGG | 0.539333 | 6_3:-91610264 | Msa0964700:CDS |
| CCGTTCCCAAATGGATGGAA+AGG | 0.540578 | 6_3:-91605986 | Msa0964700:CDS |
| GATTTCCCAAATATTTGTTG+TGG | 0.543307 | 6_3:+91608048 | None:intergenic |
| CACCGTATCTCTAACCACTA+AGG | 0.547811 | 6_3:+91609623 | None:intergenic |
| CATACTAGTTTGTATAAGAG+TGG | 0.551040 | 6_3:-91609741 | Msa0964700:CDS |
| GACATGTTTAGTGAGAAAGA+TGG | 0.552783 | 6_3:-91606022 | Msa0964700:CDS |
| GAAAAGGGACTATATGCTGT+TGG | 0.553034 | 6_3:-91605962 | Msa0964700:CDS |
| GTTCATCTATTGATGCAAAG+AGG | 0.556561 | 6_3:-91605916 | Msa0964700:CDS |
| GGAAACCGTTCCCAAATGGA+TGG | 0.562029 | 6_3:-91605991 | Msa0964700:CDS |
| TGTGCCTCAAATTGAAGGGA+TGG | 0.564740 | 6_3:-91609787 | Msa0964700:CDS |
| TGCTGCTGCCGCTAATCCTG+AGG | 0.566955 | 6_3:+91610187 | None:intergenic |
| GCTGTTGGTTTCACTAAACG+TGG | 0.580511 | 6_3:-91605947 | Msa0964700:CDS |
| ATACAGTGGAATTTGTTGAT+GGG | 0.584603 | 6_3:-91606806 | Msa0964700:CDS |
| GTATCTCTAACCACTAAGGA+TGG | 0.609523 | 6_3:+91609627 | None:intergenic |
| AAGTTGTGCCTCAAATTGAA+GGG | 0.631817 | 6_3:-91609791 | Msa0964700:CDS |
| GCTGCTGCCGCTAATCCTGA+GGG | 0.633865 | 6_3:+91610188 | None:intergenic |
| TGAAGCACCTTTAACCAAGT+GGG | 0.640553 | 6_3:+91606729 | None:intergenic |
| ATATACGTGTAGGTTTGCAA+GGG | 0.641719 | 6_3:-91606849 | Msa0964700:intron |
| GTGTGGAAATTCAGGCATGG+AGG | 0.642809 | 6_3:-91609682 | Msa0964700:CDS |
| CTAATTGTTTAGCTTCAATG+TGG | 0.650137 | 6_3:-91610121 | Msa0964700:CDS |
| ACAGAAGCAATGTACCCACT+TGG | 0.652396 | 6_3:-91606743 | Msa0964700:CDS |
| GGGGTGTGGAAATTCAGGCA+TGG | 0.657648 | 6_3:-91609685 | Msa0964700:CDS |
| AAATGGTTGATTGTTGCTAG+TGG | 0.673168 | 6_3:-91609828 | Msa0964700:CDS |
| CTGTTGGTTTCACTAAACGT+GGG | 0.687223 | 6_3:-91605946 | Msa0964700:CDS |
| ACGACTAGCACATAATACAG+TGG | 0.706423 | 6_3:-91606820 | Msa0964700:CDS |
| TGCTAGTGGTGAAAATGCTG+AGG | 0.712690 | 6_3:-91609814 | Msa0964700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTGAATATTTATGTAAA+TGG | - | chr6_3:91606196-91606215 | Msa0964700:intron | 10.0% |
| !! | TTGTTTATATTAAAATGATA+AGG | - | chr6_3:91606999-91607018 | Msa0964700:intron | 10.0% |
| !!! | TAAAGAAAATAATCTTTTTA+GGG | + | chr6_3:91607927-91607946 | None:intergenic | 10.0% |
| !!! | TTAAAGAAAATAATCTTTTT+AGG | + | chr6_3:91607928-91607947 | None:intergenic | 10.0% |
| !! | AAAAACATTATTGTAAAATA+AGG | + | chr6_3:91609623-91609642 | None:intergenic | 10.0% |
| !! | CATTAAAAATCAATTATATA+AGG | - | chr6_3:91609774-91609793 | Msa0964700:CDS | 10.0% |
| !! | AAAGAAAAAAGAAAAAAAAA+AGG | - | chr6_3:91610220-91610239 | Msa0964700:CDS | 10.0% |
| !! | AAGAAAAAAGAAAAAAAAAA+GGG | - | chr6_3:91610221-91610240 | Msa0964700:CDS | 10.0% |
| !!! | ACAATTTTTATCTTACTTAA+AGG | - | chr6_3:91606047-91606066 | Msa0964700:intron | 15.0% |
| !!! | TTTGATATAAATCCTATTTT+TGG | - | chr6_3:91606084-91606103 | Msa0964700:intron | 15.0% |
| !!! | TTTTTTATTTTTATTTGTGC+AGG | - | chr6_3:91607959-91607978 | Msa0964700:CDS | 15.0% |
| !! | CTTCATATAAGAATTAATTA+TGG | - | chr6_3:91608536-91608555 | Msa0964700:intron | 15.0% |
| !! | TGTTTAGTTATTTATATAGA+GGG | + | chr6_3:91608782-91608801 | None:intergenic | 15.0% |
| !! | TTGTTTAGTTATTTATATAG+AGG | + | chr6_3:91608783-91608802 | None:intergenic | 15.0% |
| !! | TACATTATACTACTAAAAAA+AGG | - | chr6_3:91608949-91608968 | Msa0964700:intron | 15.0% |
| !!! | TTTTTTTAAAAACTTTGTGT+AGG | - | chr6_3:91608972-91608991 | Msa0964700:intron | 15.0% |
| !!! | TTACATATAGTTGATAAATA+TGG | - | chr6_3:91609351-91609370 | Msa0964700:intron | 15.0% |
| !! | AGAAAAAAGAAAAAAAAAAG+GGG | - | chr6_3:91610222-91610241 | Msa0964700:CDS | 15.0% |
| !! | TAGCATAGTAAAATCAATAT+TGG | - | chr6_3:91605801-91605820 | Msa0964700:three_prime_UTR | 20.0% |
| !! | ACTCAAGAAATTATGAAAAA+TGG | - | chr6_3:91606162-91606181 | Msa0964700:intron | 20.0% |
| !! | ATTAGAGACATCAAATTTAT+AGG | - | chr6_3:91606588-91606607 | Msa0964700:intron | 20.0% |
| !! | TTAGAGACATCAAATTTATA+GGG | - | chr6_3:91606589-91606608 | Msa0964700:intron | 20.0% |
| !!! | TTTTTAAATTAGACTGGTTT+AGG | + | chr6_3:91606805-91606824 | None:intergenic | 20.0% |
| !! | AAACCAGTCTAATTTAAAAA+TGG | - | chr6_3:91606805-91606824 | Msa0964700:CDS | 20.0% |
| !! | GTAAATGATAAACAATTTAC+AGG | - | chr6_3:91606841-91606860 | Msa0964700:intron | 20.0% |
| !! | TAAGATAAGTACATTAAGTT+TGG | - | chr6_3:91606958-91606977 | Msa0964700:intron | 20.0% |
| !! | AAGAGATTTGATCTTTAATT+TGG | + | chr6_3:91607207-91607226 | None:intergenic | 20.0% |
| !!! | AAAAGCATGAAAAAAAAAGA+AGG | - | chr6_3:91607259-91607278 | Msa0964700:intron | 20.0% |
| !!! | TAACATTTTTTATGCTTTTG+AGG | + | chr6_3:91607365-91607384 | None:intergenic | 20.0% |
| !!! | TATGGCAATTATTTCTTTTT+GGG | + | chr6_3:91607455-91607474 | None:intergenic | 20.0% |
| !! | TTAGCTTCTTCAAAAAAAAA+TGG | - | chr6_3:91607626-91607645 | Msa0964700:intron | 20.0% |
| !!! | ATTTTGCTTATAAAAGTGAT+CGG | + | chr6_3:91607781-91607800 | None:intergenic | 20.0% |
| !! | TTCTTAAGATTTACTTCATT+TGG | + | chr6_3:91607868-91607887 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGTTGATTAAGAC+AGG | + | chr6_3:91608331-91608350 | None:intergenic | 20.0% |
| !! | GAGTTGAATAAAAAAAACTA+AGG | - | chr6_3:91608474-91608493 | Msa0964700:intron | 20.0% |
| !! | TAGAATATTAAGAATCATAG+AGG | + | chr6_3:91608713-91608732 | None:intergenic | 20.0% |
| !!! | CCTTTTTTGATAATATGAAT+CGG | + | chr6_3:91608841-91608860 | None:intergenic | 20.0% |
| !! | TGATTATGAAGATGTAAAAT+TGG | + | chr6_3:91609064-91609083 | None:intergenic | 20.0% |
| !! | GATATTAGAAAATCTAATGA+TGG | + | chr6_3:91609165-91609184 | None:intergenic | 20.0% |
| !! | ATAAATATGGTAAATAGCAT+AGG | - | chr6_3:91609364-91609383 | Msa0964700:intron | 20.0% |
| !!! | GTCTCTAGTTTTTTTTTTTA+GGG | + | chr6_3:91609456-91609475 | None:intergenic | 20.0% |
| !!! | TGTCTCTAGTTTTTTTTTTT+AGG | + | chr6_3:91609457-91609476 | None:intergenic | 20.0% |
| !! | ACACTTAACAAAATTAAAGA+TGG | + | chr6_3:91609573-91609592 | None:intergenic | 20.0% |
| !! | GGATTGAAAAAAAATGAAAT+TGG | + | chr6_3:91609602-91609621 | None:intergenic | 20.0% |
| !!! | ATGTTTTTTCTATCTCTATT+TGG | - | chr6_3:91609635-91609654 | Msa0964700:CDS | 20.0% |
| !! | TCTCACATAAAATAAAGATA+AGG | - | chr6_3:91609717-91609736 | Msa0964700:CDS | 20.0% |
| !! | AAATCAATTATATAAGGATG+AGG | - | chr6_3:91609780-91609799 | Msa0964700:CDS | 20.0% |
| !! | TGTTAATACAATATCAAACT+AGG | + | chr6_3:91609877-91609896 | None:intergenic | 20.0% |
| !! | ATTGAAATTCATTGTGATTA+GGG | - | chr6_3:91609992-91610011 | Msa0964700:CDS | 20.0% |
| !! | ACTTGTATGAATTAGAAAAA+GGG | - | chr6_3:91610195-91610214 | Msa0964700:CDS | 20.0% |
| !!! | GTAAAATCAATATTGGTTTC+AGG | - | chr6_3:91605808-91605827 | Msa0964700:three_prime_UTR | 25.0% |
| ! | TCAAAACCTATGATAGATTA+AGG | - | chr6_3:91605947-91605966 | Msa0964700:CDS | 25.0% |
| !!! | GATAAAAATTGTTGCTTTGT+TGG | + | chr6_3:91606039-91606058 | None:intergenic | 25.0% |
| ! | TACAAACTAGTATGCAAAAT+TGG | + | chr6_3:91606294-91606313 | None:intergenic | 25.0% |
| ! | GTAAAAGAACACTTGAAAAT+CGG | + | chr6_3:91606682-91606701 | None:intergenic | 25.0% |
| !!! | TGTCCATTTTTAAATTAGAC+TGG | + | chr6_3:91606811-91606830 | None:intergenic | 25.0% |
| !!! | AAGATCCATTTGTTTTTCAA+AGG | - | chr6_3:91607029-91607048 | Msa0964700:intron | 25.0% |
| ! | AAAAAGAAGGAAATGTTAAC+CGG | - | chr6_3:91607272-91607291 | Msa0964700:intron | 25.0% |
| !!! | CTATGGCAATTATTTCTTTT+TGG | + | chr6_3:91607456-91607475 | None:intergenic | 25.0% |
| !! | TTTGCTTTAACAACCTTTTT+AGG | + | chr6_3:91607493-91607512 | None:intergenic | 25.0% |
| ! | AAAAAGGTTGTTAAAGCAAA+TGG | - | chr6_3:91607493-91607512 | Msa0964700:intron | 25.0% |
| !!! | AAATAATCTTTTTAGGGAAC+TGG | + | chr6_3:91607921-91607940 | None:intergenic | 25.0% |
| !! | ATATTTGGGAAATCAACTTT+TGG | - | chr6_3:91608002-91608021 | Msa0964700:CDS | 25.0% |
| !! | CTAATGTCAGATTTTATTCT+TGG | - | chr6_3:91608083-91608102 | Msa0964700:intron | 25.0% |
| !!! | TACAAGTTTTTAAGCTCTAA+AGG | + | chr6_3:91608149-91608168 | None:intergenic | 25.0% |
| ! | TTAGAGCTTAAAAACTTGTA+CGG | - | chr6_3:91608149-91608168 | Msa0964700:intron | 25.0% |
| ! | AATCAAAACTGGCAAAATTA+AGG | - | chr6_3:91608208-91608227 | Msa0964700:intron | 25.0% |
| !! | AATAAGATGAAAAACCCTTT+TGG | + | chr6_3:91608262-91608281 | None:intergenic | 25.0% |
| ! | CCGATTCATATTATCAAAAA+AGG | - | chr6_3:91608838-91608857 | Msa0964700:intron | 25.0% |
| !! | ATCACAAATCATTTTCTCTT+TGG | + | chr6_3:91608893-91608912 | None:intergenic | 25.0% |
| ! | ATCATCTAATATATACGTGT+AGG | - | chr6_3:91609182-91609201 | Msa0964700:intron | 25.0% |
| !! | AATATTACACTCTATCGATT+TGG | - | chr6_3:91609826-91609845 | Msa0964700:CDS | 25.0% |
| !!! | ATATTACACTCTATCGATTT+GGG | - | chr6_3:91609827-91609846 | Msa0964700:CDS | 25.0% |
| ! | GATTGAAATTCATTGTGATT+AGG | - | chr6_3:91609991-91610010 | Msa0964700:CDS | 25.0% |
| !! | CTTTTTCTAATTCATACAAG+TGG | + | chr6_3:91610196-91610215 | None:intergenic | 25.0% |
| ! | CACTTGTATGAATTAGAAAA+AGG | - | chr6_3:91610194-91610213 | Msa0964700:CDS | 25.0% |
| !!! | CTTTTTTTTTTCCCTCAAAT+GGG | + | chr6_3:91610274-91610293 | None:intergenic | 25.0% |
| !!! | TCTTTTTTTTTTCCCTCAAA+TGG | + | chr6_3:91610275-91610294 | None:intergenic | 25.0% |
| AAAGGAACAAGAATGCAAAA+TGG | - | chr6_3:91605756-91605775 | Msa0964700:three_prime_UTR | 30.0% | |
| ! | CTAAACAATTAGCTCTTTCA+AGG | + | chr6_3:91605912-91605931 | None:intergenic | 30.0% |
| ! | CTAATTGTTTAGCTTCAATG+TGG | - | chr6_3:91605920-91605939 | Msa0964700:CDS | 30.0% |
| ATGAAGCCTTAATCTATCAT+AGG | + | chr6_3:91605956-91605975 | None:intergenic | 30.0% | |
| !! | TTGATGTTGTTTGTGGATTT+TGG | - | chr6_3:91606130-91606149 | Msa0964700:intron | 30.0% |
| ! | CATACTAGTTTGTATAAGAG+TGG | - | chr6_3:91606300-91606319 | Msa0964700:intron | 30.0% |
| TTGAAATAGCCACACAAATT+TGG | - | chr6_3:91606514-91606533 | Msa0964700:intron | 30.0% | |
| !!! | CTTTAGTTCTTTTTAGTTCG+TGG | - | chr6_3:91606559-91606578 | Msa0964700:intron | 30.0% |
| AAAGAAGTTAGTTGTAGTGA+CGG | + | chr6_3:91606928-91606947 | None:intergenic | 30.0% | |
| !! | CCATTTGTTTTTCAAAGGTA+CGG | - | chr6_3:91607034-91607053 | Msa0964700:intron | 30.0% |
| !! | TTTTAGTTATCCTGACACAA+AGG | + | chr6_3:91607242-91607261 | None:intergenic | 30.0% |
| GTGTCTACAATTTCCTAAAA+AGG | - | chr6_3:91607477-91607496 | Msa0964700:intron | 30.0% | |
| AATTCTCTCAGATGTCAATT+AGG | - | chr6_3:91607594-91607613 | Msa0964700:intron | 30.0% | |
| !! | TAAGAAGTGTCTTAAACAAG+TGG | - | chr6_3:91607654-91607673 | Msa0964700:intron | 30.0% |
| ATCTTGCCACAACAAATATT+TGG | - | chr6_3:91607987-91608006 | Msa0964700:CDS | 30.0% | |
| TCTTGCCACAACAAATATTT+GGG | - | chr6_3:91607988-91608007 | Msa0964700:CDS | 30.0% | |
| ! | GATTTCCCAAATATTTGTTG+TGG | + | chr6_3:91607996-91608015 | None:intergenic | 30.0% |
| !!! | CAACTTTTGGTTTATCTATG+TGG | - | chr6_3:91608015-91608034 | Msa0964700:CDS | 30.0% |
| TATCTATGTGGTTGCTTAAA+TGG | - | chr6_3:91608027-91608046 | Msa0964700:CDS | 30.0% | |
| GGAATTGAAAGACCAAAAAT+TGG | - | chr6_3:91608122-91608141 | Msa0964700:intron | 30.0% | |
| ACATACCAATCAAATCCAAA+AGG | - | chr6_3:91608244-91608263 | Msa0964700:intron | 30.0% | |
| CATACCAATCAAATCCAAAA+GGG | - | chr6_3:91608245-91608264 | Msa0964700:intron | 30.0% | |
| ! | AAAACCCTTTTGGATTTGAT+TGG | + | chr6_3:91608252-91608271 | None:intergenic | 30.0% |
| !!! | TTAATGTGTGTTTTGATCCA+CGG | - | chr6_3:91608360-91608379 | Msa0964700:intron | 30.0% |
| ! | TCCAGAAATTTTGAATAGTG+TGG | - | chr6_3:91608608-91608627 | Msa0964700:intron | 30.0% |
| ! | CCAGAAATTTTGAATAGTGT+GGG | - | chr6_3:91608609-91608628 | Msa0964700:intron | 30.0% |
| TAGTTGACAATTTGATCACA+TGG | + | chr6_3:91608925-91608944 | None:intergenic | 30.0% | |
| TTTGAATATTGTCGAGTTCA+TGG | + | chr6_3:91609031-91609050 | None:intergenic | 30.0% | |
| !!! | ATCTCTCTCTTTTTTTCTCT+TGG | - | chr6_3:91609123-91609142 | Msa0964700:intron | 30.0% |
| !! | AATACAGTGGAATTTGTTGA+TGG | - | chr6_3:91609234-91609253 | Msa0964700:intron | 30.0% |
| !! | ATACAGTGGAATTTGTTGAT+GGG | - | chr6_3:91609235-91609254 | Msa0964700:intron | 30.0% |
| ATATGGTAAATAGCATAGGA+AGG | - | chr6_3:91609368-91609387 | Msa0964700:intron | 30.0% | |
| GTTTCAGGACCAATTATAGT+TGG | - | chr6_3:91605823-91605842 | Msa0964700:three_prime_UTR | 35.0% | |
| GCAGCATGTCTTAAACAAAA+AGG | - | chr6_3:91605871-91605890 | Msa0964700:CDS | 35.0% | |
| GGAAGTTGACAAAATTGCTT+TGG | + | chr6_3:91605982-91606001 | None:intergenic | 35.0% | |
| ! | CTCTTATGCCATTTCCAAAA+GGG | - | chr6_3:91606001-91606020 | Msa0964700:CDS | 35.0% |
| !! | TGTTGCTTTGTTGGATATGA+TGG | + | chr6_3:91606030-91606049 | None:intergenic | 35.0% |
| !!! | TCCTATTTTTGGCAAACAAG+TGG | - | chr6_3:91606095-91606114 | Msa0964700:intron | 35.0% |
| ACCACTTGTTTGCCAAAAAT+AGG | + | chr6_3:91606099-91606118 | None:intergenic | 35.0% | |
| ! | GCTGAATTTGATGTTGTTTG+TGG | - | chr6_3:91606123-91606142 | Msa0964700:intron | 35.0% |
| AAATGGTTGATTGTTGCTAG+TGG | - | chr6_3:91606213-91606232 | Msa0964700:intron | 35.0% | |
| AAGTTGTGCCTCAAATTGAA+GGG | - | chr6_3:91606250-91606269 | Msa0964700:intron | 35.0% | |
| !! | TTGTGGGAAGAATGTTTTAG+TGG | - | chr6_3:91606332-91606351 | Msa0964700:intron | 35.0% |
| ATCCTTAGTGGTTAGAGATA+CGG | - | chr6_3:91606416-91606435 | Msa0964700:intron | 35.0% | |
| AAATAGCCACACAAATTTGG+AGG | - | chr6_3:91606517-91606536 | Msa0964700:intron | 35.0% | |
| AGAACACTTGAAAATCGGAA+AGG | + | chr6_3:91606677-91606696 | None:intergenic | 35.0% | |
| ! | CCGTACCTTTGAAAAACAAA+TGG | + | chr6_3:91607037-91607056 | None:intergenic | 35.0% |
| GAAAGTGAGAGAACAAAGAA+TGG | + | chr6_3:91607130-91607149 | None:intergenic | 35.0% | |
| CTTTGTTCTCTCACTTTCAT+TGG | - | chr6_3:91607132-91607151 | Msa0964700:intron | 35.0% | |
| AGGAAATTGTAGACACACTA+TGG | + | chr6_3:91607473-91607492 | None:intergenic | 35.0% | |
| TGCTTATAAAAGTGATCGGA+TGG | + | chr6_3:91607777-91607796 | None:intergenic | 35.0% | |
| ! | ATGGTTCTCTGTTCATTTTG+TGG | - | chr6_3:91608046-91608065 | Msa0964700:CDS | 35.0% |
| CTTGGAGATACATCTCAATT+TGG | - | chr6_3:91608101-91608120 | Msa0964700:intron | 35.0% | |
| !!! | AGCTCTAAAGGACCAATTTT+TGG | + | chr6_3:91608137-91608156 | None:intergenic | 35.0% |
| ACAGTAGCTCAAATCAAAAC+TGG | - | chr6_3:91608197-91608216 | Msa0964700:intron | 35.0% | |
| ! | AAAATAAACTTTTGCCACCG+TGG | + | chr6_3:91608380-91608399 | None:intergenic | 35.0% |
| ! | AAAATTTCTGGATCTGTCAC+TGG | + | chr6_3:91608600-91608619 | None:intergenic | 35.0% |
| CCCACACTATTCAAAATTTC+TGG | + | chr6_3:91608612-91608631 | None:intergenic | 35.0% | |
| TCATAGAGGACAACTATGAT+GGG | + | chr6_3:91608699-91608718 | None:intergenic | 35.0% | |
| ATCATAGAGGACAACTATGA+TGG | + | chr6_3:91608700-91608719 | None:intergenic | 35.0% | |
| AATCGGATGTGAAATCGAAT+AGG | + | chr6_3:91608824-91608843 | None:intergenic | 35.0% | |
| ATGCAAGTTAAAGCATGTGT+GGG | + | chr6_3:91609004-91609023 | None:intergenic | 35.0% | |
| AATATTGTCGAGTTCATGGA+CGG | + | chr6_3:91609027-91609046 | None:intergenic | 35.0% | |
| TATATACGTGTAGGTTTGCA+AGG | - | chr6_3:91609191-91609210 | Msa0964700:intron | 35.0% | |
| ATATACGTGTAGGTTTGCAA+GGG | - | chr6_3:91609192-91609211 | Msa0964700:intron | 35.0% | |
| CATAGGAAGGAGTTGAATTA+AGG | - | chr6_3:91609381-91609400 | Msa0964700:intron | 35.0% | |
| GACATGTTTAGTGAGAAAGA+TGG | - | chr6_3:91610019-91610038 | Msa0964700:CDS | 35.0% | |
| TTTCTCCTTTCCATCCATTT+GGG | + | chr6_3:91610063-91610082 | None:intergenic | 35.0% | |
| ! | TTTTCTCCTTTCCATCCATT+TGG | + | chr6_3:91610064-91610083 | None:intergenic | 35.0% |
| AAATGGATGGAAAGGAGAAA+AGG | - | chr6_3:91610063-91610082 | Msa0964700:CDS | 35.0% | |
| AATGGATGGAAAGGAGAAAA+GGG | - | chr6_3:91610064-91610083 | Msa0964700:CDS | 35.0% | |
| GTTCATCTATTGATGCAAAG+AGG | - | chr6_3:91610125-91610144 | Msa0964700:CDS | 35.0% | |
| CAGAAGATATTGAAACTAGC+TGG | - | chr6_3:91610152-91610171 | Msa0964700:CDS | 35.0% | |
| AACTAGCTGGAAATCTGTTA+AGG | - | chr6_3:91610165-91610184 | Msa0964700:CDS | 35.0% | |
| TCTAATTCATACAAGTGGCT+TGG | + | chr6_3:91610191-91610210 | None:intergenic | 35.0% | |
| AAAAAAAAAGGGGCTCTTCT+TGG | - | chr6_3:91610232-91610251 | Msa0964700:CDS | 35.0% | |
| GGCACATGATCATCAAAAGA+AGG | - | chr6_3:91605777-91605796 | Msa0964700:three_prime_UTR | 40.0% | |
| GCTCTTTCAAGGATTTGACT+TGG | + | chr6_3:91605901-91605920 | None:intergenic | 40.0% | |
| !! | CCTTTTGGAAATGGCATAAG+AGG | + | chr6_3:91606003-91606022 | None:intergenic | 40.0% |
| ! | CCTCTTATGCCATTTCCAAA+AGG | - | chr6_3:91606000-91606019 | Msa0964700:CDS | 40.0% |
| !! | GATGGTAACCCTTTTGGAAA+TGG | + | chr6_3:91606012-91606031 | None:intergenic | 40.0% |
| ! | GGATATGATGGTAACCCTTT+TGG | + | chr6_3:91606018-91606037 | None:intergenic | 40.0% |
| GAAGTTGTGCCTCAAATTGA+AGG | - | chr6_3:91606249-91606268 | Msa0964700:intron | 40.0% | |
| TGTTCCATCCCTTCAATTTG+AGG | + | chr6_3:91606261-91606280 | None:intergenic | 40.0% | |
| GAAGGGATGGAACAATTTCA+AGG | - | chr6_3:91606267-91606286 | Msa0964700:intron | 40.0% | |
| ! | AAGAGTGGTAGCATGTTTTG+TGG | - | chr6_3:91606315-91606334 | Msa0964700:intron | 40.0% |
| ! | AGAGTGGTAGCATGTTTTGT+GGG | - | chr6_3:91606316-91606335 | Msa0964700:intron | 40.0% |
| !!! | TGGGAAGAATGTTTTAGTGG+TGG | - | chr6_3:91606335-91606354 | Msa0964700:intron | 40.0% |
| !!! | GGGAAGAATGTTTTAGTGGT+GGG | - | chr6_3:91606336-91606355 | Msa0964700:intron | 40.0% |
| !!! | GGAAGAATGTTTTAGTGGTG+GGG | - | chr6_3:91606337-91606356 | Msa0964700:intron | 40.0% |
| CTAAGGATGGATGAGCATTA+TGG | + | chr6_3:91606404-91606423 | None:intergenic | 40.0% | |
| TAATGCTCATCCATCCTTAG+TGG | - | chr6_3:91606404-91606423 | Msa0964700:intron | 40.0% | |
| GTATCTCTAACCACTAAGGA+TGG | + | chr6_3:91606417-91606436 | None:intergenic | 40.0% | |
| TTTCAGCCTCCAAATTTGTG+TGG | + | chr6_3:91606526-91606545 | None:intergenic | 40.0% | |
| TTGGCAACGTGGTATTTGTT+TGG | - | chr6_3:91607534-91607553 | Msa0964700:intron | 40.0% | |
| ! | GTGGTATTTGTTTGGAGTCT+GGG | - | chr6_3:91607542-91607561 | Msa0964700:intron | 40.0% |
| !! | AAGACACCTGTTTTGGATGT+TGG | - | chr6_3:91608173-91608192 | Msa0964700:intron | 40.0% |
| !! | AGACACCTGTTTTGGATGTT+GGG | - | chr6_3:91608174-91608193 | Msa0964700:intron | 40.0% |
| GAAATCGAATAGGAGATGAC+TGG | + | chr6_3:91608814-91608833 | None:intergenic | 40.0% | |
| GATGCAAGTTAAAGCATGTG+TGG | + | chr6_3:91609005-91609024 | None:intergenic | 40.0% | |
| ACGACTAGCACATAATACAG+TGG | - | chr6_3:91609221-91609240 | Msa0964700:intron | 40.0% | |
| !! | GGAATTTGTTGATGGGAAAG+TGG | - | chr6_3:91609242-91609261 | Msa0964700:intron | 40.0% |
| ! | GATGCTATCATTCTAGCTAC+TGG | - | chr6_3:91609273-91609292 | Msa0964700:intron | 40.0% |
| CAATGTACCCACTTGGTTAA+AGG | - | chr6_3:91609305-91609324 | Msa0964700:intron | 40.0% | |
| ! | TGAAGCACCTTTAACCAAGT+GGG | + | chr6_3:91609315-91609334 | None:intergenic | 40.0% |
| ! | ATGAAGCACCTTTAACCAAG+TGG | + | chr6_3:91609316-91609335 | None:intergenic | 40.0% |
| GCGTGGATATAAATCATAGG+CGG | + | chr6_3:91609853-91609872 | None:intergenic | 40.0% | |
| GGTGCGTGGATATAAATCAT+AGG | + | chr6_3:91609856-91609875 | None:intergenic | 40.0% | |
| ACAATATCAAACTAGGTGCG+TGG | + | chr6_3:91609870-91609889 | None:intergenic | 40.0% | |
| ! | GTGAGAAAGATGGTTTTCCA+AGG | - | chr6_3:91610029-91610048 | Msa0964700:CDS | 40.0% |
| GAAAAGGGACTATATGCTGT+TGG | - | chr6_3:91610079-91610098 | Msa0964700:CDS | 40.0% | |
| !! | CTGTTGGTTTCACTAAACGT+GGG | - | chr6_3:91610095-91610114 | Msa0964700:CDS | 40.0% |
| !!! | TTTTTTCCCTCAAATGGGAG+AGG | + | chr6_3:91610269-91610288 | None:intergenic | 40.0% |
| GGACCAATTATAGTTGGAGC+TGG | - | chr6_3:91605829-91605848 | Msa0964700:three_prime_UTR | 45.0% | |
| GGACCAGCTCCAACTATAAT+TGG | + | chr6_3:91605835-91605854 | None:intergenic | 45.0% | |
| TGCTAGTGGTGAAAATGCTG+AGG | - | chr6_3:91606227-91606246 | Msa0964700:intron | 45.0% | |
| TGTGCCTCAAATTGAAGGGA+TGG | - | chr6_3:91606254-91606273 | Msa0964700:intron | 45.0% | |
| !!! | AATGTTTTAGTGGTGGGGTG+TGG | - | chr6_3:91606342-91606361 | Msa0964700:intron | 45.0% |
| ! | TTCAGGCATGGAGGTTTGTT+TGG | - | chr6_3:91606368-91606387 | Msa0964700:intron | 45.0% |
| CACCGTATCTCTAACCACTA+AGG | + | chr6_3:91606421-91606440 | None:intergenic | 45.0% | |
| TGATTCCTTAACCAGTGCTC+CGG | + | chr6_3:91607303-91607322 | None:intergenic | 45.0% | |
| ! | CGTGGTATTTGTTTGGAGTC+TGG | - | chr6_3:91607541-91607560 | Msa0964700:intron | 45.0% |
| GTGCTCTTTCTCGAAGTCTT+AGG | - | chr6_3:91607568-91607587 | Msa0964700:intron | 45.0% | |
| ACTGTCCCAACATCCAAAAC+AGG | + | chr6_3:91608182-91608201 | None:intergenic | 45.0% | |
| !!! | ATGTGTGTTTTGATCCACGG+TGG | - | chr6_3:91608363-91608382 | Msa0964700:intron | 45.0% |
| !! | TCACTGGTCGAGTTGAATTG+TGG | + | chr6_3:91608584-91608603 | None:intergenic | 45.0% |
| ACAGAAGCAATGTACCCACT+TGG | - | chr6_3:91609298-91609317 | Msa0964700:intron | 45.0% | |
| CCTTTCCATCCATTTGGGAA+CGG | + | chr6_3:91610058-91610077 | None:intergenic | 45.0% | |
| !! | GCTGTTGGTTTCACTAAACG+TGG | - | chr6_3:91610094-91610113 | Msa0964700:CDS | 45.0% |
| ! | TTCACTAAACGTGGGTTGCT+TGG | - | chr6_3:91610103-91610122 | Msa0964700:CDS | 45.0% |
| AAGGTTCCTCTCCCATTTGA+GGG | - | chr6_3:91610260-91610279 | Msa0964700:CDS | 45.0% | |
| !! | AAATGTAAAAAATATTATAT+TGG | - | chr6_3:91607322-91607341 | Msa0964700:intron | 5.0% |
| GTGTGGAAATTCAGGCATGG+AGG | - | chr6_3:91606359-91606378 | Msa0964700:intron | 50.0% | |
| CTGCAAAGAGCCTTTGTGTC+AGG | - | chr6_3:91607229-91607248 | Msa0964700:intron | 50.0% | |
| GAAATGTTAACCGGTGCCTC+CGG | - | chr6_3:91607281-91607300 | Msa0964700:intron | 50.0% | |
| TTTCCTTAACTAGTGCCCCC+TGG | - | chr6_3:91607412-91607431 | Msa0964700:intron | 50.0% | |
| TTCCTTAACTAGTGCCCCCT+GGG | - | chr6_3:91607413-91607432 | Msa0964700:intron | 50.0% | |
| TCTTGTTAACCAGTGCCCCA+GGG | + | chr6_3:91607432-91607451 | None:intergenic | 50.0% | |
| GTCTCTTAACCCACTTGCGT+TGG | - | chr6_3:91607515-91607534 | Msa0964700:intron | 50.0% | |
| ! | GTACGGCAAGACACCTGTTT+TGG | - | chr6_3:91608166-91608185 | Msa0964700:intron | 50.0% |
| CCATTTGGGAACGGTTTCCT+TGG | + | chr6_3:91610049-91610068 | None:intergenic | 50.0% | |
| CCAAGGAAACCGTTCCCAAA+TGG | - | chr6_3:91610046-91610065 | Msa0964700:CDS | 50.0% | |
| GGAAACCGTTCCCAAATGGA+TGG | - | chr6_3:91610050-91610069 | Msa0964700:CDS | 50.0% | |
| CCGTTCCCAAATGGATGGAA+AGG | - | chr6_3:91610055-91610074 | Msa0964700:CDS | 50.0% | |
| GGGGCTCTTCTTGGTTATGA+AGG | - | chr6_3:91610241-91610260 | Msa0964700:CDS | 50.0% | |
| GAAGGTTCCTCTCCCATTTG+AGG | - | chr6_3:91610259-91610278 | Msa0964700:CDS | 50.0% | |
| ATAGTTGGAGCTGGTCCCTC+AGG | - | chr6_3:91605838-91605857 | Msa0964700:three_prime_UTR | 55.0% | |
| AGCTGGTCCCTCAGGATTAG+CGG | - | chr6_3:91605846-91605865 | Msa0964700:exon | 55.0% | |
| ! | GTGGTGGGGTGTGGAAATTC+AGG | - | chr6_3:91606351-91606370 | Msa0964700:intron | 55.0% |
| GGGGTGTGGAAATTCAGGCA+TGG | - | chr6_3:91606356-91606375 | Msa0964700:intron | 55.0% | |
| TTCCTTAACCAGTGCTCCGG+AGG | + | chr6_3:91607300-91607319 | None:intergenic | 55.0% | |
| TCCTTAACTAGTGCCCCCTG+GGG | - | chr6_3:91607414-91607433 | Msa0964700:intron | 55.0% | |
| TTGTTAACCAGTGCCCCAGG+GGG | + | chr6_3:91607430-91607449 | None:intergenic | 55.0% | |
| CTTGTTAACCAGTGCCCCAG+GGG | + | chr6_3:91607431-91607450 | None:intergenic | 55.0% | |
| ! | GTCTTGTTAACCAGTGCCCC+AGG | + | chr6_3:91607433-91607452 | None:intergenic | 55.0% |
| ACCACGTTGCCAACGCAAGT+GGG | + | chr6_3:91607527-91607546 | None:intergenic | 55.0% | |
| TACCACGTTGCCAACGCAAG+TGG | + | chr6_3:91607528-91607547 | None:intergenic | 55.0% | |
| GCTGCTGCCGCTAATCCTGA+GGG | + | chr6_3:91605856-91605875 | None:intergenic | 60.0% | |
| TGCTGCTGCCGCTAATCCTG+AGG | + | chr6_3:91605857-91605876 | None:intergenic | 60.0% | |
| !! | TGCCTCCGGAGCACTGGTTA+AGG | - | chr6_3:91607295-91607314 | Msa0964700:intron | 60.0% |
| ! | ACCCACTTGCGTTGGCAACG+TGG | - | chr6_3:91607523-91607542 | Msa0964700:intron | 60.0% |
| ! | AACCAGTGCTCCGGAGGCAC+CGG | + | chr6_3:91607294-91607313 | None:intergenic | 65.0% |
| !! | GCCCCAGGGGGCACTAGTTA+AGG | + | chr6_3:91607418-91607437 | None:intergenic | 65.0% |
| AACCGGTGCCTCCGGAGCAC+TGG | - | chr6_3:91607289-91607308 | Msa0964700:intron | 70.0% | |
| ACTAGTGCCCCCTGGGGCAC+TGG | - | chr6_3:91607420-91607439 | Msa0964700:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 91605745 | 91610318 | 91605745 | ID=Msa0964700;Name=Msa0964700 |
| chr6_3 | mRNA | 91605745 | 91610318 | 91605745 | ID=Msa0964700-mRNA-1;Parent=Msa0964700;Name=Msa0964700-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0.75|1|1|1|4|114|418 |
| chr6_3 | exon | 91605745 | 91606050 | 91605745 | ID=Msa0964700-mRNA-1:exon:16601;Parent=Msa0964700-mRNA-1 |
| chr6_3 | exon | 91606737 | 91606859 | 91606737 | ID=Msa0964700-mRNA-1:exon:16600;Parent=Msa0964700-mRNA-1 |
| chr6_3 | exon | 91607834 | 91608082 | 91607834 | ID=Msa0964700-mRNA-1:exon:16599;Parent=Msa0964700-mRNA-1 |
| chr6_3 | exon | 91609626 | 91610318 | 91609626 | ID=Msa0964700-mRNA-1:exon:16598;Parent=Msa0964700-mRNA-1 |
| chr6_3 | CDS | 91609626 | 91610318 | 91609626 | ID=Msa0964700-mRNA-1:cds;Parent=Msa0964700-mRNA-1 |
| chr6_3 | CDS | 91607834 | 91608082 | 91607834 | ID=Msa0964700-mRNA-1:cds;Parent=Msa0964700-mRNA-1 |
| chr6_3 | CDS | 91606737 | 91606859 | 91606737 | ID=Msa0964700-mRNA-1:cds;Parent=Msa0964700-mRNA-1 |
| chr6_3 | CDS | 91605859 | 91606050 | 91605859 | ID=Msa0964700-mRNA-1:cds;Parent=Msa0964700-mRNA-1 |
| chr6_3 | three_prime_UTR | 91605745 | 91605858 | 91605745 | ID=Msa0964700-mRNA-1:three_prime_utr;Parent=Msa0964700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
