AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0899710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0899710 MtrunA17_Chr6g0485681 99.165 479 4 0 1 479 1 479 0.0 980
Msa0899710 MtrunA17_Chr5g0409271 31.579 171 101 5 8 175 3 160 1.20e-14 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0899710 AT3G24530.1 78.170 481 103 1 1 479 1 481 0.0 793
Msa0899710 AT3G24530.2 79.215 433 90 0 47 479 1 433 0.0 726
Msa0899710 AT3G24530.3 79.949 389 78 0 91 479 1 389 0.0 657
Msa0899710 AT4G19150.1 27.647 170 110 4 17 186 20 176 4.49e-11 63.5
Msa0899710 AT5G60070.1 31.217 189 118 7 17 203 112 290 6.50e-11 65.1

Find 135 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCATTCTCCTTCCTTCTT+TGG 0.158669 6_1:+95041469 None:intergenic
ATTCATTCATGTGCTCTTTC+AGG 0.162641 6_1:-95041216 Msa0899710:CDS
GATTAATGCAAGAGAAAATT+TGG 0.194417 6_1:-95035604 Msa0899710:CDS
GCAACCATTCTTTGGCAATT+AGG 0.236259 6_1:-95035490 Msa0899710:exon
TCTTTGGCAATTAGGTGTTT+TGG 0.238936 6_1:-95035482 Msa0899710:exon
ACAATAGGTGAATCCTTCTT+TGG 0.267190 6_1:-95035186 Msa0899710:three_prime_UTR
CAGCGAAACCAAAGCTAAAA+TGG 0.303855 6_1:-95036872 Msa0899710:CDS
CCTTTGTATCAACGCTTCTA+TGG 0.314985 6_1:+95035683 None:intergenic
ATGTTTCTGCAGGAAACAAT+AGG 0.317133 6_1:-95037855 Msa0899710:CDS
TTAGCACAGCAACCATTCTT+TGG 0.323710 6_1:-95035498 Msa0899710:CDS
GCAGAAGGTAGTTTGCTCTA+TGG 0.334627 6_1:-95035738 Msa0899710:CDS
TCCCTAAGTTTATCATTTCC+AGG 0.339640 6_1:+95036949 None:intergenic
CACCTTTACACCTTGCAGTT+TGG 0.339947 6_1:-95037171 Msa0899710:CDS
TGAGATAGAGGCTAAGAATA+TGG 0.343681 6_1:-95037785 Msa0899710:intron
CACAAAACCTTTCCCAAAGA+AGG 0.356016 6_1:+95035173 None:intergenic
AAGGAACTTTCAAATATTGT+AGG 0.359061 6_1:-95036838 Msa0899710:CDS
GACAAACTCGCCAACTAAAT+CGG 0.369343 6_1:+95036594 None:intergenic
TTATCATCTGATTTCTGCAT+TGG 0.376034 6_1:+95035969 None:intergenic
GAAGCTATTACTCGTTTCAT+TGG 0.382036 6_1:+95035861 None:intergenic
ATAATTAATTAAAATACTTA+AGG 0.385823 6_1:+95035016 None:intergenic
TCAAAATCCACATTGAAATC+TGG 0.391184 6_1:+95035384 None:intergenic
ATGGCCTTTCTTGGGAATCC+TGG 0.392337 6_1:-95036709 Msa0899710:CDS
GCTCTTTCAGGTGACCTCAT+TGG 0.393937 6_1:-95041204 Msa0899710:CDS
TACAGTCAAAACTAAGTCTT+AGG 0.395011 6_1:+95035580 None:intergenic
TGAAAATACAACTACGAAAG+TGG 0.398331 6_1:-95036804 Msa0899710:CDS
GATTTAGTTGGCGAGTTTGT+CGG 0.410464 6_1:-95036592 Msa0899710:CDS
AAAATTGTAGTAATATTTGC+AGG 0.411416 6_1:-95035894 Msa0899710:CDS
AACTTAGGGAACTATTAAAC+TGG 0.411802 6_1:-95036936 Msa0899710:CDS
TGAATTGAGTTTGCCACAAT+AGG 0.414823 6_1:-95035201 Msa0899710:three_prime_UTR
ATCGGAGAGGGTTGAGATAG+AGG 0.417047 6_1:-95037797 Msa0899710:CDS
TTCTCTTGCATTAATCATCA+TGG 0.422736 6_1:+95035611 None:intergenic
GGACTACGGGTTGGAAGCCT+TGG 0.424972 6_1:-95035946 Msa0899710:CDS
CTCTATGGATTTAAGTTGCA+TGG 0.425673 6_1:-95035723 Msa0899710:CDS
CAATAGGTGAATCCTTCTTT+GGG 0.425740 6_1:-95035185 Msa0899710:three_prime_UTR
AAGGAAGGAGAATGGAAGAT+TGG 0.426741 6_1:-95041463 Msa0899710:five_prime_UTR
AAAATACTGAGCTTAAAATC+TGG 0.426750 6_1:-95035342 Msa0899710:three_prime_UTR
AATCATCTTTCGCAAGGCCC+TGG 0.426961 6_1:-95036967 Msa0899710:CDS
GATGAGAGGCGCAGAGCTCT+TGG 0.439509 6_1:-95036763 Msa0899710:CDS
CCCCTCATATGGCCTTTCTT+GGG 0.440544 6_1:-95036717 Msa0899710:CDS
AATGCAGTTAGCCACATTGA+TGG 0.445641 6_1:-95035430 Msa0899710:three_prime_UTR
TTGAGGAATTCACAATGAAC+AGG 0.447775 6_1:-95041278 Msa0899710:exon
GAAGATTTAGAAGCAGGTCT+TGG 0.451968 6_1:-95035525 Msa0899710:CDS
AATGCAGAAATCAGATGATA+AGG 0.455044 6_1:-95035967 Msa0899710:CDS
TAAAATGGATGAACTTGAAA+AGG 0.462730 6_1:-95036857 Msa0899710:CDS
TTCCCAAGAAAGGCCATATG+AGG 0.463525 6_1:+95036715 None:intergenic
TAAGGAAACAAATGGCGGTT+TGG 0.465248 6_1:-95035640 Msa0899710:CDS
ACATTGGAAGATTTAGAAGC+AGG 0.466998 6_1:-95035531 Msa0899710:CDS
TCCTGGAACAGGTAAAACTA+TGG 0.467198 6_1:-95036692 Msa0899710:CDS
TTCTAAATCTTCCAATGTAA+TGG 0.467879 6_1:+95035536 None:intergenic
GTATGTTATTCATTCTTATG+AGG 0.468503 6_1:-95035072 Msa0899710:three_prime_UTR
TTCTTTGCTGCCATGTGCAA+TGG 0.474026 6_1:+95037636 None:intergenic
TTTCTTGGGAATCCTGGAAC+AGG 0.477449 6_1:-95036703 Msa0899710:CDS
TGTTTCTGCAGGAAACAATA+GGG 0.478049 6_1:-95037854 Msa0899710:CDS
TTGCACATGGCAGCAAAGAA+TGG 0.480265 6_1:-95037633 Msa0899710:CDS
CATACAAAGAATACAATGTA+AGG 0.481591 6_1:+95035090 None:intergenic
CCCTGGAAATGATAAACTTA+GGG 0.487476 6_1:-95036950 Msa0899710:CDS
AACACCTAATTGCCAAAGAA+TGG 0.492204 6_1:+95035486 None:intergenic
ACACCTCTTCATGTTTCTGC+AGG 0.492960 6_1:-95037865 Msa0899710:CDS
AGAGCTCTTGGTCTGCATGT+TGG 0.493864 6_1:-95036751 Msa0899710:CDS
AAGAATGAAGAAGAAGAAAG+AGG 0.494780 6_1:+95041329 None:intergenic
CTACGGGTTGGAAGCCTTGG+AGG 0.495165 6_1:-95035943 Msa0899710:CDS
GGTGAATCCTTCTTTGGGAA+AGG 0.497368 6_1:-95035180 Msa0899710:three_prime_UTR
ATTGTTCAATCTAGAGAAAG+AGG 0.500322 6_1:-95041522 None:intergenic
ACTATGGTAGCACGCATCCT+TGG 0.502013 6_1:-95036676 Msa0899710:CDS
GCCCTGGAAATGATAAACTT+AGG 0.502459 6_1:-95036951 Msa0899710:CDS
GGCGAGTTTGTCGGTCATAC+CGG 0.502758 6_1:-95036583 Msa0899710:CDS
CCCTAAGTTTATCATTTCCA+GGG 0.515848 6_1:+95036950 None:intergenic
AAATCAGATGATAAGGACTA+CGG 0.525761 6_1:-95035960 Msa0899710:CDS
CGGTCCGAAAACGAGGAAGA+AGG 0.528809 6_1:-95036563 Msa0899710:intron
AGAACTTCTTACCATTACAT+TGG 0.531138 6_1:-95035547 Msa0899710:CDS
AAACAACGTAAGGAAACAAA+TGG 0.531773 6_1:-95035648 Msa0899710:CDS
TGCCAAAGAAGGAAGGAGAA+TGG 0.535346 6_1:-95041471 Msa0899710:five_prime_UTR
CCATAGAAGCGTTGATACAA+AGG 0.536377 6_1:-95035683 Msa0899710:CDS
AAAGAAGGATTCACCTATTG+TGG 0.542740 6_1:+95035188 None:intergenic
CCTTTGAATCATCTTTCGCA+AGG 0.544004 6_1:-95036973 Msa0899710:CDS
CCCAAGAAAGGCCATATGAG+GGG 0.545373 6_1:+95036717 None:intergenic
TTAGCCACATTGATGGCCGT+TGG 0.546394 6_1:-95035423 Msa0899710:three_prime_UTR
TCTTCTTGAGTGGCAAGGAT+CGG 0.546943 6_1:-95037815 Msa0899710:CDS
GTACAACGGACCGATTTAGT+TGG 0.547583 6_1:-95036604 Msa0899710:CDS
TAGTTAAATTTCTTCTTGAG+TGG 0.547620 6_1:-95037825 Msa0899710:CDS
GAGAGAGTTGATGCCAAAGA+AGG 0.548472 6_1:-95041482 Msa0899710:five_prime_UTR
AAATTTCTTCTTGAGTGGCA+AGG 0.549157 6_1:-95037820 Msa0899710:CDS
CATAGAAGCGTTGATACAAA+GGG 0.554281 6_1:-95035682 Msa0899710:CDS
TGTCTGACTGTACGACTGCA+CGG 0.558326 6_1:-95035288 Msa0899710:three_prime_UTR
TACAGATCCAAGAAGCAGAA+GGG 0.558979 6_1:-95036028 Msa0899710:intron
TGGCAAACTCAATTCATGAC+AGG 0.567570 6_1:+95035208 None:intergenic
GCAAGAGTAGGAATCGGAAT+CGG 0.568081 6_1:-95041428 Msa0899710:five_prime_UTR
ACTTCTGTCACTTTATCAGT+AGG 0.569855 6_1:+95036625 None:intergenic
GCACAGCTGCTTCTTGCACA+CGG 0.570174 6_1:-95037597 Msa0899710:CDS
AAGATGAACAATTTAGCAGA+AGG 0.570848 6_1:-95035753 Msa0899710:CDS
CAACTACGAAAGTGGGCGAA+AGG 0.572916 6_1:-95036796 Msa0899710:CDS
TGTTCCAGGATTCCCAAGAA+AGG 0.574363 6_1:+95036705 None:intergenic
TAATGCAGATTGCAGTGCTA+AGG 0.575210 6_1:-95037098 Msa0899710:CDS
GTCTGACTGTACGACTGCAC+GGG 0.576403 6_1:-95035287 Msa0899710:three_prime_UTR
GAAAATACAACTACGAAAGT+GGG 0.577609 6_1:-95036803 Msa0899710:CDS
GCACATGAATGAATTGTGGC+TGG 0.578617 6_1:+95041225 None:intergenic
GAGTTGATGCCAAAGAAGGA+AGG 0.580478 6_1:-95041478 Msa0899710:five_prime_UTR
AGATGATAAGGACTACGGGT+TGG 0.581981 6_1:-95035955 Msa0899710:CDS
ATTTGATGACGCGCAAGAGT+AGG 0.582689 6_1:-95041440 Msa0899710:five_prime_UTR
TGCCAAACTGCAAGGTGTAA+AGG 0.584464 6_1:+95037169 None:intergenic
AATCAGATGATAAGGACTAC+GGG 0.585566 6_1:-95035959 Msa0899710:CDS
TGACGCGCAAGAGTAGGAAT+CGG 0.591052 6_1:-95041434 Msa0899710:five_prime_UTR
CCTTGGAAGATTACTTCACA+TGG 0.591386 6_1:-95036659 Msa0899710:CDS
TGAACAGGTCTCAAGATCAA+AGG 0.592100 6_1:-95041263 Msa0899710:CDS
GGAGGAGATTATGTCTGTCA+TGG 0.595950 6_1:-95035925 Msa0899710:CDS
CCATGTGAAGTAATCTTCCA+AGG 0.599879 6_1:+95036659 None:intergenic
ATACAGATCCAAGAAGCAGA+AGG 0.600619 6_1:-95036029 Msa0899710:intron
TCCCAAGAAAGGCCATATGA+GGG 0.600997 6_1:+95036716 None:intergenic
TGAGTGGCAAGGATCGGAGA+GGG 0.606868 6_1:-95037809 Msa0899710:CDS
GGAAGATTACTTCACATGGT+GGG 0.609932 6_1:-95036655 Msa0899710:CDS
TTAATGAGTGCCAAACTGCA+AGG 0.610309 6_1:+95037161 None:intergenic
CCTTGCGAAAGATGATTCAA+AGG 0.611256 6_1:+95036973 None:intergenic
TTGTTCAATCTAGAGAAAGA+GGG 0.613673 6_1:-95041521 None:intergenic
ACAGATCCAAGAAGCAGAAG+GGG 0.617047 6_1:-95036027 Msa0899710:intron
ACTATCTGATCTTGATCCAA+CGG 0.620328 6_1:+95035407 None:intergenic
ATTATGTCTGTCATGGACAG+TGG 0.622054 6_1:-95035918 Msa0899710:CDS
TTTCCTGCAGAAACATGAAG+AGG 0.623173 6_1:+95037862 None:intergenic
TGTTCAATCTAGAGAAAGAG+GGG 0.637794 6_1:-95041520 None:intergenic
TGGAGAAACTCCATTGCACA+TGG 0.639498 6_1:-95037646 Msa0899710:CDS
TGGAAGATTACTTCACATGG+TGG 0.641918 6_1:-95036656 Msa0899710:CDS
CGAGTAATAGCTTCTAACGA+AGG 0.650852 6_1:-95035852 Msa0899710:CDS
GACAGACATAATCTCCTCCA+AGG 0.651577 6_1:+95035929 None:intergenic
AAGTTTGCAGCTGCACAATG+AGG 0.651812 6_1:-95035233 Msa0899710:three_prime_UTR
CCAAGAAAGGCCATATGAGG+GGG 0.655438 6_1:+95036718 None:intergenic
GGTCGTTGAATCAAGATAGA+CGG 0.655746 6_1:+95035318 None:intergenic
TTGAGTGGCAAGGATCGGAG+AGG 0.667286 6_1:-95037810 Msa0899710:CDS
AAGAGCACATGAATGAATTG+TGG 0.674915 6_1:+95041221 None:intergenic
TGATCCAACGGCCATCAATG+TGG 0.683749 6_1:+95035419 None:intergenic
CAGATCCAAGAAGCAGAAGG+GGG 0.685878 6_1:-95036026 Msa0899710:CDS
ATAAAGTGACAGAAGTACAA+CGG 0.702697 6_1:-95036618 Msa0899710:CDS
AGTCGTACAGTCAGACACAT+CGG 0.706754 6_1:+95035294 None:intergenic
CAACGTAAGGAAACAAATGG+CGG 0.727824 6_1:-95035645 Msa0899710:CDS
AGATAGTCCAGATTTCAATG+TGG 0.735798 6_1:-95035391 Msa0899710:three_prime_UTR
GTAGCTTCTGAAGACCAATG+AGG 0.740758 6_1:+95041190 None:intergenic
CGTACAGTCAGACACATCGG+TGG 0.769904 6_1:+95035297 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATTTGTTTTTTAATTTAA+TGG - chr6_1:95037456-95037475 Msa0899710:intron 10.0%
!!! TGATTCATTTTTTAATTTAA+TGG - chr6_1:95037876-95037895 Msa0899710:CDS 10.0%
!!! TATGATACTATTTTTTTTTT+TGG - chr6_1:95041494-95041513 Msa0899710:five_prime_UTR 10.0%
!! AATGAAGAAAAAAAACAAAA+GGG + chr6_1:95035357-95035376 None:intergenic 15.0%
!! AAATGAAGAAAAAAAACAAA+AGG + chr6_1:95035358-95035377 None:intergenic 15.0%
!!! TCTTTTTTTTGTTATTGTTA+TGG - chr6_1:95035406-95035425 Msa0899710:three_prime_UTR 15.0%
!! ACTTTCTCAAATTATTATTA+CGG + chr6_1:95035767-95035786 None:intergenic 15.0%
!!! TTTCTTTTGATTAATGTATT+AGG + chr6_1:95035909-95035928 None:intergenic 15.0%
!! GAAAAAAAATTAGATCTTTA+TGG - chr6_1:95036051-95036070 Msa0899710:intron 15.0%
!!! TGAAAAAAATTAGATCTTTT+TGG - chr6_1:95036476-95036495 Msa0899710:intron 15.0%
!!! TGGTTCATTTTTTAATTTAA+TGG - chr6_1:95037277-95037296 Msa0899710:intron 15.0%
!! AAAAAAAAAGTAGATCTTTA+TGG - chr6_1:95037737-95037756 Msa0899710:intron 15.0%
!!! ATATACTTTTGTAATAACTT+GGG - chr6_1:95037831-95037850 Msa0899710:CDS 15.0%
!!! TTTCTTTTGATTAATGTATT+AGG + chr6_1:95035909-95035928 None:intergenic 15.0%
!!! TTATGTTTAAACTTTTTCAT+GGG - chr6_1:95038252-95038271 Msa0899710:intron 15.0%
!!! AATAAGTTGAAAACAAATTA+TGG - chr6_1:95039045-95039064 Msa0899710:intron 15.0%
!!! GCATAAAAATAATTTTTGTT+TGG + chr6_1:95039173-95039192 None:intergenic 15.0%
!!! CTTAAAAATGTCATTTTTAT+TGG - chr6_1:95040296-95040315 Msa0899710:intron 15.0%
!!! TGCTTTATTTTTTTAATTAC+TGG - chr6_1:95041350-95041369 Msa0899710:five_prime_UTR 15.0%
!!! TTTTCTTCATTTTGATCAAA+TGG - chr6_1:95035366-95035385 Msa0899710:three_prime_UTR 20.0%
!!! TTTCTTCATTTTGATCAAAT+GGG - chr6_1:95035367-95035386 Msa0899710:three_prime_UTR 20.0%
!!! TGCTTTAGTTTTGTAAAAAT+TGG - chr6_1:95035462-95035481 Msa0899710:three_prime_UTR 20.0%
!! TTGTAAAAATTGGATCTTTA+TGG - chr6_1:95035472-95035491 Msa0899710:exon 20.0%
!! AAATTGGAATTATGTGTATA+GGG - chr6_1:95035539-95035558 Msa0899710:CDS 20.0%
!! CTTTCTCAAATTATTATTAC+GGG + chr6_1:95035766-95035785 None:intergenic 20.0%
!! GTAATAATAATTTGAGAAAG+TGG - chr6_1:95035766-95035785 Msa0899710:CDS 20.0%
!!! CAAGATCATACAAAAAATTT+TGG + chr6_1:95036021-95036040 None:intergenic 20.0%
!!! GTTTGATCTGATTTTTTTAA+AGG - chr6_1:95036187-95036206 Msa0899710:intron 20.0%
!! AAAACTTAAGCAAAATCATT+TGG + chr6_1:95037113-95037132 None:intergenic 20.0%
!!! TTTTGCTTAAGTTTTGAAAA+AGG - chr6_1:95037118-95037137 Msa0899710:CDS 20.0%
!!! TTAGATCTTTATGGTTTTTT+GGG - chr6_1:95037141-95037160 Msa0899710:CDS 20.0%
!! TTGAATATAATCACATATGT+TGG - chr6_1:95037615-95037634 Msa0899710:CDS 20.0%
!! TTTCTTATGAGAAAAAATGT+TGG - chr6_1:95037760-95037779 Msa0899710:intron 20.0%
!!! GATATACTTTTGTAATAACT+TGG - chr6_1:95037830-95037849 Msa0899710:CDS 20.0%
!!! TATACTTTTGTAATAACTTG+GGG - chr6_1:95037832-95037851 Msa0899710:CDS 20.0%
!! TAATTTAATGGAAGATTTGT+TGG - chr6_1:95037888-95037907 Msa0899710:intron 20.0%
!! CTAACAATAATTTGAGAAAA+TGG - chr6_1:95038007-95038026 Msa0899710:intron 20.0%
!!! GTTATGTTTAAACTTTTTCA+TGG - chr6_1:95038251-95038270 Msa0899710:intron 20.0%
!! TTTATGTGACAAATATGTTA+AGG - chr6_1:95038334-95038353 Msa0899710:intron 20.0%
!! TTATGTGACAAATATGTTAA+GGG - chr6_1:95038335-95038354 Msa0899710:intron 20.0%
!!! ATCCTTTTTAATTTATTGCT+TGG - chr6_1:95038380-95038399 Msa0899710:intron 20.0%
!! TAACTAAAGGATAAATGAAA+TGG + chr6_1:95038932-95038951 None:intergenic 20.0%
!! TTCAACTATATTATTTGGAT+TGG + chr6_1:95039148-95039167 None:intergenic 20.0%
!!! TGGTTTTCAACTATATTATT+TGG + chr6_1:95039153-95039172 None:intergenic 20.0%
!!! TATATAAAGTTTGTTTCCAA+TGG - chr6_1:95039205-95039224 Msa0899710:intron 20.0%
!!! ATTATTGCTAAATAGCTTTT+TGG - chr6_1:95039417-95039436 Msa0899710:intron 20.0%
!!! AATGAATTTGGTTTTAAGAT+TGG + chr6_1:95040107-95040126 None:intergenic 20.0%
!! ATAAAGTTGACAAAAAATAG+TGG + chr6_1:95040164-95040183 None:intergenic 20.0%
!! AAAATTGTAGTAATATTTGC+AGG - chr6_1:95040569-95040588 Msa0899710:intron 20.0%
!!! TAATTCTTTCTTTTAGTTTG+TGG - chr6_1:95041420-95041439 Msa0899710:five_prime_UTR 20.0%
! CGTAAAATAATCTTACAACA+GGG + chr6_1:95035333-95035352 None:intergenic 25.0%
! TCGTAAAATAATCTTACAAC+AGG + chr6_1:95035334-95035353 None:intergenic 25.0%
! TAAAGCAAGATCAAACAAAA+GGG + chr6_1:95035449-95035468 None:intergenic 25.0%
! TGTGTTATGAATTGTGTATT+TGG - chr6_1:95035516-95035535 Msa0899710:CDS 25.0%
! TGAATTGTGTATTTGGAAAT+TGG - chr6_1:95035523-95035542 Msa0899710:CDS 25.0%
! GAAATTGGAATTATGTGTAT+AGG - chr6_1:95035538-95035557 Msa0899710:CDS 25.0%
!! TCTGATTTTGTAATAACTTG+TGG - chr6_1:95035568-95035587 Msa0899710:CDS 25.0%
! TTGAATCTAATCACATATGT+TGG - chr6_1:95035793-95035812 Msa0899710:CDS 25.0%
! TGCTTATTTGGTAAAAATGA+CGG + chr6_1:95035995-95036014 None:intergenic 25.0%
!!! AAATTTTGGAGATGCTTATT+TGG + chr6_1:95036007-95036026 None:intergenic 25.0%
! TCTGTAAGAAAAAATGTTCA+TGG - chr6_1:95036077-95036096 Msa0899710:intron 25.0%
! ATCTGTTTAGTAATAACTTG+TGG - chr6_1:95036151-95036170 Msa0899710:intron 25.0%
!!! AGATTTGTTGTTGTAATGAA+TGG - chr6_1:95036211-95036230 Msa0899710:intron 25.0%
! TTATTACTTACTAGCTATGA+AGG - chr6_1:95036270-95036289 Msa0899710:intron 25.0%
! ACCAGTAAAATTTGAGAAAA+TGG - chr6_1:95036318-95036337 Msa0899710:intron 25.0%
! ACATATTTCAATGTTCAATC+TGG - chr6_1:95036357-95036376 Msa0899710:intron 25.0%
! ATGATTATTCAGTGTATGTT+CGG + chr6_1:95036992-95037011 None:intergenic 25.0%
! TGAAAAAGGTTAGATCTTTA+TGG - chr6_1:95037132-95037151 Msa0899710:CDS 25.0%
!!! GTTAGATCTTTATGGTTTTT+TGG - chr6_1:95037140-95037159 Msa0899710:CDS 25.0%
! TTGTTTGTATTGTGAATTGA+GGG - chr6_1:95037177-95037196 Msa0899710:CDS 25.0%
!! TTAATCAAGAGTGTGTAATT+TGG - chr6_1:95037257-95037276 Msa0899710:intron 25.0%
! ATAAGCAAGATCATACAAAA+GGG + chr6_1:95037713-95037732 None:intergenic 25.0%
! AATAAGCAAGATCATACAAA+AGG + chr6_1:95037714-95037733 None:intergenic 25.0%
! ATGTTATGAACGATTAGATT+AGG - chr6_1:95037929-95037948 Msa0899710:intron 25.0%
!! TATTGTTAGTCTCAACATAT+CGG + chr6_1:95037996-95038015 None:intergenic 25.0%
! TTAGATGTAACTACATATGT+CGG - chr6_1:95038035-95038054 Msa0899710:intron 25.0%
!!! TTTAAACTTTTTCATGGGAA+GGG - chr6_1:95038257-95038276 Msa0899710:intron 25.0%
! AAATATGTTAAGGGATTGAA+GGG - chr6_1:95038344-95038363 Msa0899710:intron 25.0%
! TGCCAAGCAATAAATTAAAA+AGG + chr6_1:95038385-95038404 None:intergenic 25.0%
! TAGTTAAATTTCTTCTTGAG+TGG - chr6_1:95038638-95038657 Msa0899710:intron 25.0%
! AACTTCAGTAGAAAATTTGA+TGG + chr6_1:95038711-95038730 None:intergenic 25.0%
! AAGCATAACACTTATCATAA+TGG - chr6_1:95038966-95038985 Msa0899710:intron 25.0%
! TAAAATGGATGAACTTGAAA+AGG - chr6_1:95039606-95039625 Msa0899710:intron 25.0%
! AAGGAACTTTCAAATATTGT+AGG - chr6_1:95039625-95039644 Msa0899710:intron 25.0%
! AATACTGAATTGAACCTTAT+CGG - chr6_1:95040045-95040064 Msa0899710:intron 25.0%
! ATCTCTAATGTGTATCTATT+TGG - chr6_1:95040073-95040092 Msa0899710:intron 25.0%
! GTGATTCATTAGAATGAATT+TGG + chr6_1:95040119-95040138 None:intergenic 25.0%
!! TTGAATCTTGAATCATTTTG+TGG - chr6_1:95040222-95040241 Msa0899710:intron 25.0%
! TTGGATCTGTATAAATAACA+TGG + chr6_1:95040426-95040445 None:intergenic 25.0%
! GATTAATGCAAGAGAAAATT+TGG - chr6_1:95040859-95040878 Msa0899710:intron 25.0%
!!! TAGTTTTGACTGTATAGATA+CGG - chr6_1:95040892-95040911 Msa0899710:intron 25.0%
! TTCTAAATCTTCCAATGTAA+TGG + chr6_1:95040930-95040949 None:intergenic 25.0%
!!! TTTTGGATTTTAGAGGAATT+CGG - chr6_1:95040998-95041017 Msa0899710:intron 25.0%
! AAAATACTGAGCTTAAAATC+TGG - chr6_1:95041121-95041140 Msa0899710:intron 25.0%
! CATACAAAGAATACAATGTA+AGG + chr6_1:95041376-95041395 None:intergenic 25.0%
! GTATGTTATTCATTCTTATG+AGG - chr6_1:95041391-95041410 Msa0899710:five_prime_UTR 25.0%
AAGAATGAAGAAGAAGAAAG+AGG + chr6_1:95035137-95035156 None:intergenic 30.0%
! TTTTGTCATTGAGAAGAGAA+GGG + chr6_1:95035309-95035328 None:intergenic 30.0%
! TTTTTGTCATTGAGAAGAGA+AGG + chr6_1:95035310-95035329 None:intergenic 30.0%
CTAAAGCAAGATCAAACAAA+AGG + chr6_1:95035450-95035469 None:intergenic 30.0%
TTGTTGATGTATGTGATGAA+TGG - chr6_1:95035660-95035679 Msa0899710:CDS 30.0%
AGAAAAATGAGAGACAAACA+TGG - chr6_1:95035924-95035943 Msa0899710:CDS 30.0%
AAAAGGGTAATCTTACAACA+GGG + chr6_1:95035971-95035990 None:intergenic 30.0%
GCTTATTTGGTAAAAATGAC+GGG + chr6_1:95035994-95036013 None:intergenic 30.0%
TGTGTTTGTGTTGTGAATTA+AGG - chr6_1:95036101-95036120 Msa0899710:intron 30.0%
TGTGTTGTGAATTAAGGATT+TGG - chr6_1:95036107-95036126 Msa0899710:intron 30.0%
!! GCCATTTTCTCAAATTTTAC+TGG + chr6_1:95036322-95036341 None:intergenic 30.0%
AGTAAGCAAGATCATACAAA+AGG + chr6_1:95036453-95036472 None:intergenic 30.0%
TCTGTGAGAAATAATGTTGA+TGG - chr6_1:95036502-95036521 Msa0899710:intron 30.0%
AAAATGAAGGGTAACGAAAA+GGG + chr6_1:95037075-95037094 None:intergenic 30.0%
TAAAATGAAGGGTAACGAAA+AGG + chr6_1:95037076-95037095 None:intergenic 30.0%
! TACCCTTCATTTTACCAAAT+CGG - chr6_1:95037082-95037101 Msa0899710:intron 30.0%
GTTGTTTGTATTGTGAATTG+AGG - chr6_1:95037176-95037195 Msa0899710:CDS 30.0%
GAAATTGGAATTATGTGCAT+GGG - chr6_1:95037204-95037223 Msa0899710:intron 30.0%
TTCTTGATGTATGTGATGAA+TGG - chr6_1:95037484-95037503 Msa0899710:intron 30.0%
TCTCAAATTATTACTGCTGT+TGG + chr6_1:95037584-95037603 None:intergenic 30.0%
! TTTGTTGTGAATTGAGGATT+TGG - chr6_1:95037787-95037806 Msa0899710:CDS 30.0%
TTGTTGGTGTATGTAATGAA+TGG - chr6_1:95037904-95037923 Msa0899710:intron 30.0%
AGGAATTCATTAGATCTTCA+AGG - chr6_1:95038221-95038240 Msa0899710:intron 30.0%
GGAATTCATTAGATCTTCAA+GGG - chr6_1:95038222-95038241 Msa0899710:intron 30.0%
GAATTCATTAGATCTTCAAG+GGG - chr6_1:95038223-95038242 Msa0899710:intron 30.0%
!!! GTTTAAACTTTTTCATGGGA+AGG - chr6_1:95038256-95038275 Msa0899710:intron 30.0%
ACATATTTGTCACATAAACC+CGG + chr6_1:95038332-95038351 None:intergenic 30.0%
CAAATATGTTAAGGGATTGA+AGG - chr6_1:95038343-95038362 Msa0899710:intron 30.0%
! AAACCTGTTTTATATGCAGA+TGG - chr6_1:95038570-95038589 Msa0899710:intron 30.0%
TACAATTATGAGACAATGAC+TGG + chr6_1:95038768-95038787 None:intergenic 30.0%
CTAAAGGATAAATGAAATGG+CGG + chr6_1:95038929-95038948 None:intergenic 30.0%
AACTTAGGGAACTATTAAAC+TGG - chr6_1:95039527-95039546 Msa0899710:intron 30.0%
!!! AAGTTCATCCATTTTAGCTT+TGG + chr6_1:95039602-95039621 None:intergenic 30.0%
TGAAAATACAACTACGAAAG+TGG - chr6_1:95039659-95039678 Msa0899710:intron 30.0%
GAAAATACAACTACGAAAGT+GGG - chr6_1:95039660-95039679 Msa0899710:intron 30.0%
! ATAAAGTGACAGAAGTACAA+CGG - chr6_1:95039845-95039864 Msa0899710:intron 30.0%
TGAAATTCCTTTACTCTTAC+AGG - chr6_1:95039937-95039956 Msa0899710:intron 30.0%
ATTAGAGATTCATACCGATA+AGG + chr6_1:95040062-95040081 None:intergenic 30.0%
AATGACGAAAGAAAAGTTCT+TGG + chr6_1:95040191-95040210 None:intergenic 30.0%
TTATCATCTGATTTCTGCAT+TGG + chr6_1:95040497-95040516 None:intergenic 30.0%
AATGCAGAAATCAGATGATA+AGG - chr6_1:95040496-95040515 Msa0899710:intron 30.0%
AAATCAGATGATAAGGACTA+CGG - chr6_1:95040503-95040522 Msa0899710:intron 30.0%
AAGATGAACAATTTAGCAGA+AGG - chr6_1:95040710-95040729 Msa0899710:intron 30.0%
!!! TGTTTCCTTACGTTGTTTTT+CGG + chr6_1:95040813-95040832 None:intergenic 30.0%
AAACAACGTAAGGAAACAAA+TGG - chr6_1:95040815-95040834 Msa0899710:intron 30.0%
TTCTCTTGCATTAATCATCA+TGG + chr6_1:95040855-95040874 None:intergenic 30.0%
TACAGTCAAAACTAAGTCTT+AGG + chr6_1:95040886-95040905 None:intergenic 30.0%
AGAACTTCTTACCATTACAT+TGG - chr6_1:95040916-95040935 Msa0899710:intron 30.0%
!! TTAGGTGTTTTGGATTTTAG+AGG - chr6_1:95040991-95041010 Msa0899710:intron 30.0%
TCAAAATCCACATTGAAATC+TGG + chr6_1:95041082-95041101 None:intergenic 30.0%
TTGAGGAATTCACAATGAAC+AGG - chr6_1:95035185-95035204 Msa0899710:three_prime_UTR 35.0%
! AAGAGCACATGAATGAATTG+TGG + chr6_1:95035245-95035264 None:intergenic 35.0%
ATTCATTCATGTGCTCTTTC+AGG - chr6_1:95035247-95035266 Msa0899710:three_prime_UTR 35.0%
! TAACTTGTGGCTTAATCAAC+AGG - chr6_1:95035581-95035600 Msa0899710:CDS 35.0%
AACTTGTGGCTTAATCAACA+GGG - chr6_1:95035582-95035601 Msa0899710:CDS 35.0%
TCTATGTAGCACAGATACTT+CGG + chr6_1:95035827-95035846 None:intergenic 35.0%
AAGTATCTGTGCTACATAGA+GGG - chr6_1:95035827-95035846 Msa0899710:CDS 35.0%
GAAAAGGGTAATCTTACAAC+AGG + chr6_1:95035972-95035991 None:intergenic 35.0%
! TGGTAAAAATGACGGGAAAA+GGG + chr6_1:95035987-95036006 None:intergenic 35.0%
! TTGGTAAAAATGACGGGAAA+AGG + chr6_1:95035988-95036007 None:intergenic 35.0%
! AGGATTTGGAATGATGTGTA+TGG - chr6_1:95036121-95036140 Msa0899710:intron 35.0%
! GGATTTGGAATGATGTGTAT+GGG - chr6_1:95036122-95036141 Msa0899710:intron 35.0%
! GGATTTGGAATGATGTGTAA+GGG - chr6_1:95036541-95036560 Msa0899710:intron 35.0%
TATCGTGTGTCTTAATCAAG+AGG - chr6_1:95036584-95036603 Msa0899710:CDS 35.0%
ATCGTGTGTCTTAATCAAGA+GGG - chr6_1:95036585-95036604 Msa0899710:CDS 35.0%
ACAAAATCACGTGTAAACTG+TGG - chr6_1:95036944-95036963 Msa0899710:CDS 35.0%
AAAAGGGTGATCTTACAACA+GGG + chr6_1:95037059-95037078 None:intergenic 35.0%
!! CACCGATTTGGTAAAATGAA+GGG + chr6_1:95037087-95037106 None:intergenic 35.0%
!! ACACCGATTTGGTAAAATGA+AGG + chr6_1:95037088-95037107 None:intergenic 35.0%
TGTATTGTGAATTGAGGGTT+TGG - chr6_1:95037182-95037201 Msa0899710:CDS 35.0%
TGAATTGAGGGTTTGGAAAT+TGG - chr6_1:95037189-95037208 Msa0899710:intron 35.0%
GGAAATTGGAATTATGTGCA+TGG - chr6_1:95037203-95037222 Msa0899710:intron 35.0%
!! GGTGTTTTTGTTGTGAATTG+AGG - chr6_1:95037781-95037800 Msa0899710:intron 35.0%
CTATGCTTGTACTCTTTCAA+CGG - chr6_1:95038125-95038144 Msa0899710:intron 35.0%
TTCAACCTATTCAAAACCCA+AGG + chr6_1:95038200-95038219 None:intergenic 35.0%
GTTTCTCTTTGCTCATCATT+TGG - chr6_1:95038291-95038310 Msa0899710:intron 35.0%
CGTGACATAGTTATTGATCT+TGG - chr6_1:95038445-95038464 Msa0899710:intron 35.0%
ACATAGTTATTGATCTTGGC+TGG - chr6_1:95038449-95038468 Msa0899710:intron 35.0%
CTTCATGCTTATCTTACTCT+AGG - chr6_1:95038513-95038532 Msa0899710:intron 35.0%
! ATGTTTCTGCAGGAAACAAT+AGG - chr6_1:95038608-95038627 Msa0899710:intron 35.0%
! TGTTTCTGCAGGAAACAATA+GGG - chr6_1:95038609-95038628 Msa0899710:intron 35.0%
AAATTTCTTCTTGAGTGGCA+AGG - chr6_1:95038643-95038662 Msa0899710:intron 35.0%
TGAGATAGAGGCTAAGAATA+TGG - chr6_1:95038678-95038697 Msa0899710:intron 35.0%
ATAGAGGCTAAGAATATGGT+AGG - chr6_1:95038682-95038701 Msa0899710:intron 35.0%
! ACTGTTTTCACAAGTCATCT+TGG - chr6_1:95039010-95039029 Msa0899710:intron 35.0%
AAGCATTTGTGAGTCTGTTA+GGG + chr6_1:95039100-95039119 None:intergenic 35.0%
TAAGCATTTGTGAGTCTGTT+AGG + chr6_1:95039101-95039120 None:intergenic 35.0%
! AATGCCTTTTTCTTGCAGAA+TGG - chr6_1:95039264-95039283 Msa0899710:intron 35.0%
CATACCATTCTGCAAGAAAA+AGG + chr6_1:95039271-95039290 None:intergenic 35.0%
!! ATAGCTTTTTGGTCAAATCG+TGG - chr6_1:95039428-95039447 Msa0899710:intron 35.0%
CCCTAAGTTTATCATTTCCA+GGG + chr6_1:95039516-95039535 None:intergenic 35.0%
CCCTGGAAATGATAAACTTA+GGG - chr6_1:95039513-95039532 Msa0899710:intron 35.0%
TCCCTAAGTTTATCATTTCC+AGG + chr6_1:95039517-95039536 None:intergenic 35.0%
!! ACTTCTGTCACTTTATCAGT+AGG + chr6_1:95039841-95039860 None:intergenic 35.0%
AATGTAGCCTGTAAGAGTAA+AGG + chr6_1:95039947-95039966 None:intergenic 35.0%
TTACAGGCTACATTTGCTTT+CGG - chr6_1:95039953-95039972 Msa0899710:intron 35.0%
! GAAACTAGACTTGTTTGCAT+TGG - chr6_1:95039981-95040000 Msa0899710:intron 35.0%
TTGACTGTACTAAGTTTAGG+CGG + chr6_1:95040141-95040160 None:intergenic 35.0%
TGGTTGACTGTACTAAGTTT+AGG + chr6_1:95040144-95040163 None:intergenic 35.0%
AATCAGATGATAAGGACTAC+GGG - chr6_1:95040504-95040523 Msa0899710:intron 35.0%
GAAGCTATTACTCGTTTCAT+TGG + chr6_1:95040605-95040624 None:intergenic 35.0%
!!! CGATTTTAGTTCAACAGAAC+TGG - chr6_1:95040670-95040689 Msa0899710:intron 35.0%
!! CTCTATGGATTTAAGTTGCA+TGG - chr6_1:95040740-95040759 Msa0899710:intron 35.0%
!! CATAGAAGCGTTGATACAAA+GGG - chr6_1:95040781-95040800 Msa0899710:intron 35.0%
AACAACCGAAAAACAACGTA+AGG - chr6_1:95040805-95040824 Msa0899710:intron 35.0%
ACATTGGAAGATTTAGAAGC+AGG - chr6_1:95040932-95040951 Msa0899710:intron 35.0%
AACACCTAATTGCCAAAGAA+TGG + chr6_1:95040980-95040999 None:intergenic 35.0%
! TCTTTGGCAATTAGGTGTTT+TGG - chr6_1:95040981-95041000 Msa0899710:intron 35.0%
ACTATCTGATCTTGATCCAA+CGG + chr6_1:95041059-95041078 None:intergenic 35.0%
AGATAGTCCAGATTTCAATG+TGG - chr6_1:95041072-95041091 Msa0899710:intron 35.0%
TGAATTGAGTTTGCCACAAT+AGG - chr6_1:95041262-95041281 Msa0899710:CDS 35.0%
AAAGAAGGATTCACCTATTG+TGG + chr6_1:95041278-95041297 None:intergenic 35.0%
ACAATAGGTGAATCCTTCTT+TGG - chr6_1:95041277-95041296 Msa0899710:exon 35.0%
CAATAGGTGAATCCTTCTTT+GGG - chr6_1:95041278-95041297 Msa0899710:exon 35.0%
TTCCATTCTCCTTCCTTCTT+TGG + chr6_1:95034997-95035016 None:intergenic 40.0%
AAGGAAGGAGAATGGAAGAT+TGG - chr6_1:95035000-95035019 Msa0899710:three_prime_UTR 40.0%
TGAACAGGTCTCAAGATCAA+AGG - chr6_1:95035200-95035219 Msa0899710:three_prime_UTR 40.0%
! GAAGTATCTGTGCTACATAG+AGG - chr6_1:95035826-95035845 Msa0899710:CDS 40.0%
! TGTGTTCTGAATTGCGGATT+TGG - chr6_1:95036526-95036545 Msa0899710:intron 40.0%
! CGGATTTGGAATGATGTGTA+AGG - chr6_1:95036540-95036559 Msa0899710:intron 40.0%
ACCACTTCCTCAAATTTCAC+CGG + chr6_1:95036770-95036789 None:intergenic 40.0%
! TCTGAAACGTTAGTGCTACA+TGG - chr6_1:95036820-95036839 Msa0899710:CDS 40.0%
! AGTTTTGCCAAGTGTATGCT+TGG - chr6_1:95036850-95036869 Msa0899710:CDS 40.0%
TGTGAATCCAAGCATACACT+TGG + chr6_1:95036860-95036879 None:intergenic 40.0%
GAAAAGGGTGATCTTACAAC+AGG + chr6_1:95037060-95037079 None:intergenic 40.0%
! ATCATTTGGAGACACCGATT+TGG + chr6_1:95037099-95037118 None:intergenic 40.0%
!! ATCTGGTTGGTAATAACTCG+TGG - chr6_1:95037233-95037252 Msa0899710:intron 40.0%
TCAGCATTGTTAGTAACTCG+TGG - chr6_1:95037408-95037427 Msa0899710:intron 40.0%
! AGGATTTGGAATGATGCGTA+TGG - chr6_1:95037801-95037820 Msa0899710:CDS 40.0%
! GGATTTGGAATGATGCGTAT+GGG - chr6_1:95037802-95037821 Msa0899710:CDS 40.0%
AACTTGGGGCTTAATGAACA+TGG - chr6_1:95037846-95037865 Msa0899710:CDS 40.0%
AGAAAAATGAGAGACGAGCA+CGG - chr6_1:95038172-95038191 Msa0899710:intron 40.0%
!!! GGGTTTTGAATAGGTTGAAG+AGG - chr6_1:95038201-95038220 Msa0899710:intron 40.0%
! CATGGGAAGGGATATTTTGT+TGG - chr6_1:95038269-95038288 Msa0899710:intron 40.0%
TTGGCATGCATATGTAGTCA+TGG - chr6_1:95038399-95038418 Msa0899710:intron 40.0%
AACTATGTCACGCAGTTTCA+AGG + chr6_1:95038437-95038456 None:intergenic 40.0%
GCTGGTCGATCTCAAATTAA+TGG - chr6_1:95038467-95038486 Msa0899710:intron 40.0%
GTGCCATCTGCATATAAAAC+AGG + chr6_1:95038576-95038595 None:intergenic 40.0%
TTTCCTGCAGAAACATGAAG+AGG + chr6_1:95038604-95038623 None:intergenic 40.0%
TTTGTATCACGTCTGCAGTA+TGG - chr6_1:95038797-95038816 Msa0899710:intron 40.0%
! GTGTTAAGGTGTCATACCAT+TGG + chr6_1:95039224-95039243 None:intergenic 40.0%
TTAATGAGTGCCAAACTGCA+AGG + chr6_1:95039305-95039324 None:intergenic 40.0%
TAATGCAGATTGCAGTGCTA+AGG - chr6_1:95039365-95039384 Msa0899710:intron 40.0%
GCTTAAAGCCTATGAATTGC+AGG - chr6_1:95039456-95039475 Msa0899710:intron 40.0%
TAAAGCCTATGAATTGCAGG+AGG - chr6_1:95039459-95039478 Msa0899710:intron 40.0%
AAAGCCTATGAATTGCAGGA+GGG - chr6_1:95039460-95039479 Msa0899710:intron 40.0%
CCTTGCGAAAGATGATTCAA+AGG + chr6_1:95039493-95039512 None:intergenic 40.0%
CCTTTGAATCATCTTTCGCA+AGG - chr6_1:95039490-95039509 Msa0899710:intron 40.0%
GCCCTGGAAATGATAAACTT+AGG - chr6_1:95039512-95039531 Msa0899710:intron 40.0%
CAGCGAAACCAAAGCTAAAA+TGG - chr6_1:95039591-95039610 Msa0899710:intron 40.0%
TCCTGGAACAGGTAAAACTA+TGG - chr6_1:95039771-95039790 Msa0899710:intron 40.0%
!! ACCATAGTTTTACCTGTTCC+AGG + chr6_1:95039775-95039794 None:intergenic 40.0%
CCATGTGAAGTAATCTTCCA+AGG + chr6_1:95039807-95039826 None:intergenic 40.0%
CCTTGGAAGATTACTTCACA+TGG - chr6_1:95039804-95039823 Msa0899710:intron 40.0%
TGGAAGATTACTTCACATGG+TGG - chr6_1:95039807-95039826 Msa0899710:intron 40.0%
GGAAGATTACTTCACATGGT+GGG - chr6_1:95039808-95039827 Msa0899710:intron 40.0%
GACAAACTCGCCAACTAAAT+CGG + chr6_1:95039872-95039891 None:intergenic 40.0%
GATTTAGTTGGCGAGTTTGT+CGG - chr6_1:95039871-95039890 Msa0899710:intron 40.0%
! CATACCTTCTTCCTCGTTTT+CGG + chr6_1:95039907-95039926 None:intergenic 40.0%
ATACAGATCCAAGAAGCAGA+AGG - chr6_1:95040434-95040453 Msa0899710:intron 40.0%
TACAGATCCAAGAAGCAGAA+GGG - chr6_1:95040435-95040454 Msa0899710:intron 40.0%
ATTATGTCTGTCATGGACAG+TGG - chr6_1:95040545-95040564 Msa0899710:intron 40.0%
CGAGTAATAGCTTCTAACGA+AGG - chr6_1:95040611-95040630 Msa0899710:intron 40.0%
CCTTTGTATCAACGCTTCTA+TGG + chr6_1:95040783-95040802 None:intergenic 40.0%
!! CCATAGAAGCGTTGATACAA+AGG - chr6_1:95040780-95040799 Msa0899710:intron 40.0%
CAACGTAAGGAAACAAATGG+CGG - chr6_1:95040818-95040837 Msa0899710:intron 40.0%
TAAGGAAACAAATGGCGGTT+TGG - chr6_1:95040823-95040842 Msa0899710:intron 40.0%
GAAGATTTAGAAGCAGGTCT+TGG - chr6_1:95040938-95040957 Msa0899710:intron 40.0%
TTAGCACAGCAACCATTCTT+TGG - chr6_1:95040965-95040984 Msa0899710:intron 40.0%
GCAACCATTCTTTGGCAATT+AGG - chr6_1:95040973-95040992 Msa0899710:intron 40.0%
AATGCAGTTAGCCACATTGA+TGG - chr6_1:95041033-95041052 Msa0899710:intron 40.0%
GGTCGTTGAATCAAGATAGA+CGG + chr6_1:95041148-95041167 None:intergenic 40.0%
TGGCAAACTCAATTCATGAC+AGG + chr6_1:95041258-95041277 None:intergenic 40.0%
CACAAAACCTTTCCCAAAGA+AGG + chr6_1:95041293-95041312 None:intergenic 40.0%
!! GAGAGAGTTGATGCCAAAGA+AGG - chr6_1:95034981-95035000 Msa0899710:three_prime_UTR 45.0%
!! GAGTTGATGCCAAAGAAGGA+AGG - chr6_1:95034985-95035004 Msa0899710:three_prime_UTR 45.0%
TGCCAAAGAAGGAAGGAGAA+TGG - chr6_1:95034992-95035011 Msa0899710:three_prime_UTR 45.0%
!! ATTTGATGACGCGCAAGAGT+AGG - chr6_1:95035023-95035042 Msa0899710:three_prime_UTR 45.0%
GCAAGAGTAGGAATCGGAAT+CGG - chr6_1:95035035-95035054 Msa0899710:three_prime_UTR 45.0%
CTCAAGAGAGAGAGAGAGAA+AGG + chr6_1:95035170-95035189 None:intergenic 45.0%
CTTTCTCTCTCTCTCTCTTG+AGG - chr6_1:95035168-95035187 Msa0899710:three_prime_UTR 45.0%
!!! TGAATTGTGGCTGGTTTTGC+AGG + chr6_1:95035232-95035251 None:intergenic 45.0%
GCACATGAATGAATTGTGGC+TGG + chr6_1:95035241-95035260 None:intergenic 45.0%
! GTAGCTTCTGAAGACCAATG+AGG + chr6_1:95035276-95035295 None:intergenic 45.0%
AGAGACAAACATGGTGCCTT+GGG - chr6_1:95035933-95035952 Msa0899710:CDS 45.0%
AGGGTTTCTCTCAAAACCCA+AGG + chr6_1:95035952-95035971 None:intergenic 45.0%
! GATGGCTGTGTTCTGAATTG+CGG - chr6_1:95036520-95036539 Msa0899710:intron 45.0%
ACCGGTGAAATTTGAGGAAG+TGG - chr6_1:95036766-95036785 Msa0899710:CDS 45.0%
AAGCTGCAAAGTGTAGCTTC+TGG + chr6_1:95036922-95036941 None:intergenic 45.0%
TCAGTGTATGTTCGGATCAG+TGG + chr6_1:95036984-95037003 None:intergenic 45.0%
ATGTGCATGGGTTTCAGATC+TGG - chr6_1:95037216-95037235 Msa0899710:intron 45.0%
GGAATGATGCGTATGGGATT+CGG - chr6_1:95037808-95037827 Msa0899710:CDS 45.0%
!!! TTGGTTTTTTTTCGCCTCGC+CGG - chr6_1:95038310-95038329 Msa0899710:intron 45.0%
TATGTCACGCAGTTTCAAGG+TGG + chr6_1:95038434-95038453 None:intergenic 45.0%
! ACACCTCTTCATGTTTCTGC+AGG - chr6_1:95038598-95038617 Msa0899710:intron 45.0%
TCTTCTTGAGTGGCAAGGAT+CGG - chr6_1:95038648-95038667 Msa0899710:intron 45.0%
TGGAGAAACTCCATTGCACA+TGG - chr6_1:95038817-95038836 Msa0899710:intron 45.0%
TTCTTTGCTGCCATGTGCAA+TGG + chr6_1:95038830-95038849 None:intergenic 45.0%
TTGCACATGGCAGCAAAGAA+TGG - chr6_1:95038830-95038849 Msa0899710:intron 45.0%
CACCTTAACACCTTGCAGTT+TGG - chr6_1:95039233-95039252 Msa0899710:intron 45.0%
! TGCCAAACTGCAAGGTGTTA+AGG + chr6_1:95039238-95039257 None:intergenic 45.0%
TTTGTGAGTGCCAAACTGCA+AGG + chr6_1:95039246-95039265 None:intergenic 45.0%
CACCTTTACACCTTGCAGTT+TGG - chr6_1:95039292-95039311 Msa0899710:intron 45.0%
TGCCAAACTGCAAGGTGTAA+AGG + chr6_1:95039297-95039316 None:intergenic 45.0%
CATTCCCTCCTGCAATTCAT+AGG + chr6_1:95039467-95039486 None:intergenic 45.0%
! AAGGCATGCTTTTGGATGAG+AGG - chr6_1:95039686-95039705 Msa0899710:intron 45.0%
TCCCAAGAAAGGCCATATGA+GGG + chr6_1:95039750-95039769 None:intergenic 45.0%
TTCCCAAGAAAGGCCATATG+AGG + chr6_1:95039751-95039770 None:intergenic 45.0%
TGTTCCAGGATTCCCAAGAA+AGG + chr6_1:95039761-95039780 None:intergenic 45.0%
TTTCTTGGGAATCCTGGAAC+AGG - chr6_1:95039760-95039779 Msa0899710:intron 45.0%
! GTACAACGGACCGATTTAGT+TGG - chr6_1:95039859-95039878 Msa0899710:intron 45.0%
ACAGATCCAAGAAGCAGAAG+GGG - chr6_1:95040436-95040455 Msa0899710:intron 45.0%
AGATGATAAGGACTACGGGT+TGG - chr6_1:95040508-95040527 Msa0899710:intron 45.0%
GACAGACATAATCTCCTCCA+AGG + chr6_1:95040537-95040556 None:intergenic 45.0%
GGAGGAGATTATGTCTGTCA+TGG - chr6_1:95040538-95040557 Msa0899710:intron 45.0%
! CTAACGAAGGCTTTTGCAGA+CGG - chr6_1:95040624-95040643 Msa0899710:intron 45.0%
! TAACGAAGGCTTTTGCAGAC+GGG - chr6_1:95040625-95040644 Msa0899710:intron 45.0%
!! GCAGAAGGTAGTTTGCTCTA+TGG - chr6_1:95040725-95040744 Msa0899710:intron 45.0%
AGTCGTACAGTCAGACACAT+CGG + chr6_1:95041172-95041191 None:intergenic 45.0%
AAGTTTGCAGCTGCACAATG+AGG - chr6_1:95041230-95041249 Msa0899710:CDS 45.0%
! GGTGAATCCTTCTTTGGGAA+AGG - chr6_1:95041283-95041302 Msa0899710:exon 45.0%
!!! ATTTTTAATTTAATAGAATT+TGG - chr6_1:95035624-95035643 Msa0899710:CDS 5.0%
!! ATAATTAATTAAAATACTTA+AGG + chr6_1:95041450-95041469 None:intergenic 5.0%
!!! AATTAATTATTTTACTTTTA+TGG - chr6_1:95041460-95041479 Msa0899710:five_prime_UTR 5.0%
TGACGCGCAAGAGTAGGAAT+CGG - chr6_1:95035029-95035048 Msa0899710:three_prime_UTR 50.0%
! GCTCTTTCAGGTGACCTCAT+TGG - chr6_1:95035259-95035278 Msa0899710:three_prime_UTR 50.0%
GAGAGACAAACATGGTGCCT+TGG - chr6_1:95035932-95035951 Msa0899710:CDS 50.0%
TGAAGCACATACACGACCCT+AGG - chr6_1:95036731-95036750 Msa0899710:CDS 50.0%
!! GTTGGCACCGGTGAAATTTG+AGG - chr6_1:95036760-95036779 Msa0899710:CDS 50.0%
TGTAGCTTCTGGCGAAATCG+CGG + chr6_1:95036911-95036930 None:intergenic 50.0%
GTTCGGATCAGTGGTGAGTT+TGG + chr6_1:95036975-95036994 None:intergenic 50.0%
GCATGGGTTTCAGATCTGGT+TGG - chr6_1:95037220-95037239 Msa0899710:intron 50.0%
! CTGAAGTGTCAGTGCTGCAT+AGG - chr6_1:95037646-95037665 Msa0899710:CDS 50.0%
!!! CGGTGCCTTGGGTTTTGAAT+AGG - chr6_1:95038192-95038211 Msa0899710:intron 50.0%
!!! TGGTTTTTTTTCGCCTCGCC+GGG - chr6_1:95038311-95038330 Msa0899710:intron 50.0%
TTTGTCACATAAACCCGGCG+AGG + chr6_1:95038327-95038346 None:intergenic 50.0%
ATCGGAGAGGGTTGAGATAG+AGG - chr6_1:95038666-95038685 Msa0899710:intron 50.0%
AATCATCTTTCGCAAGGCCC+TGG - chr6_1:95039496-95039515 Msa0899710:intron 50.0%
CAACTACGAAAGTGGGCGAA+AGG - chr6_1:95039667-95039686 Msa0899710:intron 50.0%
AGAGCTCTTGGTCTGCATGT+TGG - chr6_1:95039712-95039731 Msa0899710:intron 50.0%
CCAAGAAAGGCCATATGAGG+GGG + chr6_1:95039748-95039767 None:intergenic 50.0%
CCCAAGAAAGGCCATATGAG+GGG + chr6_1:95039749-95039768 None:intergenic 50.0%
CCCCTCATATGGCCTTTCTT+GGG - chr6_1:95039746-95039765 Msa0899710:intron 50.0%
ATGGCCTTTCTTGGGAATCC+TGG - chr6_1:95039754-95039773 Msa0899710:intron 50.0%
ACTATGGTAGCACGCATCCT+TGG - chr6_1:95039787-95039806 Msa0899710:intron 50.0%
! CTTCTTCCTCGTTTTCGGAC+CGG + chr6_1:95039902-95039921 None:intergenic 50.0%
CAGATCCAAGAAGCAGAAGG+GGG - chr6_1:95040437-95040456 Msa0899710:intron 50.0%
GAATTCCCCCTTCTGCTTCT+TGG + chr6_1:95040445-95040464 None:intergenic 50.0%
! TTAGCCACATTGATGGCCGT+TGG - chr6_1:95041040-95041059 Msa0899710:intron 50.0%
TGATCCAACGGCCATCAATG+TGG + chr6_1:95041047-95041066 None:intergenic 50.0%
TGTCTGACTGTACGACTGCA+CGG - chr6_1:95041175-95041194 Msa0899710:CDS 50.0%
TTGAGTGGCAAGGATCGGAG+AGG - chr6_1:95038653-95038672 Msa0899710:intron 55.0%
TGAGTGGCAAGGATCGGAGA+GGG - chr6_1:95038654-95038673 Msa0899710:intron 55.0%
GCACAGCTGCTTCTTGCACA+CGG - chr6_1:95038866-95038885 Msa0899710:intron 55.0%
!! GTGGGCGAAAGGCATGCTTT+TGG - chr6_1:95039678-95039697 Msa0899710:intron 55.0%
CACAAGACGACCCCCTCATA+TGG - chr6_1:95039735-95039754 Msa0899710:intron 55.0%
CCCCCTCATATGGCCTTTCT+TGG - chr6_1:95039745-95039764 Msa0899710:intron 55.0%
GGCGAGTTTGTCGGTCATAC+CGG - chr6_1:95039880-95039899 Msa0899710:intron 55.0%
GTCATACCGGTCCGAAAACG+AGG - chr6_1:95039893-95039912 Msa0899710:intron 55.0%
CGGTCCGAAAACGAGGAAGA+AGG - chr6_1:95039900-95039919 Msa0899710:intron 55.0%
CGTACAGTCAGACACATCGG+TGG + chr6_1:95041169-95041188 None:intergenic 55.0%
GTCTGACTGTACGACTGCAC+GGG - chr6_1:95041176-95041195 Msa0899710:CDS 55.0%
CACGACCCTAGGAGACACGT+TGG - chr6_1:95036742-95036761 Msa0899710:CDS 60.0%
! CGGTGCCAACGTGTCTCCTA+GGG + chr6_1:95036750-95036769 None:intergenic 60.0%
CCTAGGAGACACGTTGGCAC+CGG - chr6_1:95036748-95036767 Msa0899710:CDS 60.0%
AGAGACGAGCACGGTGCCTT+GGG - chr6_1:95038181-95038200 Msa0899710:intron 60.0%
! GATGAGAGGCGCAGAGCTCT+TGG - chr6_1:95039700-95039719 Msa0899710:intron 60.0%
!! GGACTACGGGTTGGAAGCCT+TGG - chr6_1:95040517-95040536 Msa0899710:intron 60.0%
!! CTACGGGTTGGAAGCCTTGG+AGG - chr6_1:95040520-95040539 Msa0899710:intron 60.0%
! CCGGTGCCAACGTGTCTCCT+AGG + chr6_1:95036751-95036770 None:intergenic 65.0%
GAGAGACGAGCACGGTGCCT+TGG - chr6_1:95038180-95038199 Msa0899710:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 95034952 95041533 95034952 ID=Msa0899710;Name=Msa0899710
chr6_1 mRNA 95034952 95041533 95034952 ID=Msa0899710-mRNA-1;Parent=Msa0899710;Name=Msa0899710-mRNA-1;_AED=0.01;_eAED=0.01;_QI=247|1|1|1|1|1|6|539|485
chr6_1 exon 95034952 95036045 95034952 ID=Msa0899710-mRNA-1:exon:16301;Parent=Msa0899710-mRNA-1
chr6_1 exon 95036564 95037007 95036564 ID=Msa0899710-mRNA-1:exon:16300;Parent=Msa0899710-mRNA-1
chr6_1 exon 95037093 95037203 95037093 ID=Msa0899710-mRNA-1:exon:16299;Parent=Msa0899710-mRNA-1
chr6_1 exon 95037572 95037670 95037572 ID=Msa0899710-mRNA-1:exon:16298;Parent=Msa0899710-mRNA-1
chr6_1 exon 95037786 95037896 95037786 ID=Msa0899710-mRNA-1:exon:16297;Parent=Msa0899710-mRNA-1
chr6_1 exon 95041149 95041533 95041149 ID=Msa0899710-mRNA-1:exon:16296;Parent=Msa0899710-mRNA-1
chr6_1 five_prime_UTR 95041287 95041533 95041287 ID=Msa0899710-mRNA-1:five_prime_utr;Parent=Msa0899710-mRNA-1
chr6_1 CDS 95041149 95041286 95041149 ID=Msa0899710-mRNA-1:cds;Parent=Msa0899710-mRNA-1
chr6_1 CDS 95037786 95037896 95037786 ID=Msa0899710-mRNA-1:cds;Parent=Msa0899710-mRNA-1
chr6_1 CDS 95037572 95037670 95037572 ID=Msa0899710-mRNA-1:cds;Parent=Msa0899710-mRNA-1
chr6_1 CDS 95037093 95037203 95037093 ID=Msa0899710-mRNA-1:cds;Parent=Msa0899710-mRNA-1
chr6_1 CDS 95036564 95037007 95036564 ID=Msa0899710-mRNA-1:cds;Parent=Msa0899710-mRNA-1
chr6_1 CDS 95035491 95036045 95035491 ID=Msa0899710-mRNA-1:cds;Parent=Msa0899710-mRNA-1
chr6_1 three_prime_UTR 95034952 95035490 95034952 ID=Msa0899710-mRNA-1:three_prime_utr;Parent=Msa0899710-mRNA-1
Gene Sequence

>Msa0899710

ATGAACAGGTCTCAAGATCAAAGGTCAAGACCTGCAAAACCAGCCACAATTCATTCATGTGCTCTTTCAGGTGACCTCATTGGTCTTCAGAAGCTACTTCGTGATAACCCTTCTCTTCTCAATGACAAAAACCCTGTTATGGCACACACACCTCTTCATGTTTCTGCAGGAAACAATAGGGCTGACATAGTTAAATTTCTTCTTGAGTGGCAAGGATCGGAGAGGGTTGAGATAGAGGCTAAGAATATGTATGGAGAAACTCCATTGCACATGGCAGCAAAGAATGGATGTAGTGAAGCTGCACAGCTGCTTCTTGCACACGGCGCTATTATTGAAGCTAGAGCAAATAATGGTATGACACCTTTACACCTTGCAGTTTGGCACTCATTAAGAGCAGAAGAATTCTTAACTGTGAAAACATTGCTTGAGCATAATGCAGATTGCAGTGCTAAGGACAATGAGGGAATGACGCCTTTGAATCATCTTTCGCAAGGCCCTGGAAATGATAAACTTAGGGAACTATTAAACTGGCATCTTGAAGAGCAGAGAAAGAAGCGAGCTATTAAAGCGTGCAGCGAAACCAAAGCTAAAATGGATGAACTTGAAAAGGAACTTTCAAATATTGTAGGTCTTAATGATCTGAAAATACAACTACGAAAGTGGGCGAAAGGCATGCTTTTGGATGAGAGGCGCAGAGCTCTTGGTCTGCATGTTGGCACAAGACGACCCCCTCATATGGCCTTTCTTGGGAATCCTGGAACAGGTAAAACTATGGTAGCACGCATCCTTGGAAGATTACTTCACATGGTGGGAATTCTACCTACTGATAAAGTGACAGAAGTACAACGGACCGATTTAGTTGGCGAGTTTGTCGGTCATACCGGTCCGAAAACGAGGAAGAAGATCCAAGAAGCAGAAGGGGGAATTCTTTTTGTCGACGAAGCTTATAGACTGATACCAATGCAGAAATCAGATGATAAGGACTACGGGTTGGAAGCCTTGGAGGAGATTATGTCTGTCATGGACAGTGGAAAAATTGTAGTAATATTTGCAGGCTACAGCGAACCAATGAAACGAGTAATAGCTTCTAACGAAGGCTTTTGCAGACGGGTGACTAAGTTTTTTCATTTTATCGATTTTAGTTCAACAGAACTGGCAACAATTCTTCACATCAAGATGAACAATTTAGCAGAAGGTAGTTTGCTCTATGGATTTAAGTTGCATGGCAATTGCAGTATAAAAGCCATAGAAGCGTTGATACAAAGGGAAACAACCGAAAAACAACGTAAGGAAACAAATGGCGGTTTGGTAGATACCATGATGATTAATGCAAGAGAAAATTTGGACCTAAGACTTAGTTTTGACTGTATAGATACGGAAGAACTTCTTACCATTACATTGGAAGATTTAGAAGCAGGTCTTGGCTTTTTAGCACAGCAACCATTCTTTGGCAATTAG
Protein sequence

>Msa0899710

MNRSQDQRSRPAKPATIHSCALSGDLIGLQKLLRDNPSLLNDKNPVMAHTPLHVSAGNNRADIVKFLLEWQGSERVEIEAKNMYGETPLHMAAKNGCSEAAQLLLAHGAIIEARANNGMTPLHLAVWHSLRAEEFLTVKTLLEHNADCSAKDNEGMTPLNHLSQGPGNDKLRELLNWHLEEQRKKRAIKACSETKAKMDELEKELSNIVGLNDLKIQLRKWAKGMLLDERRRALGLHVGTRRPPHMAFLGNPGTGKTMVARILGRLLHMVGILPTDKVTEVQRTDLVGEFVGHTGPKTRKKIQEAEGGILFVDEAYRLIPMQKSDDKDYGLEALEEIMSVMDSGKIVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFIDFSSTELATILHIKMNNLAEGSLLYGFKLHGNCSIKAIEALIQRETTEKQRKETNGGLVDTMMINARENLDLRLSFDCIDTEELLTITLEDLEAGLGFLAQQPFFGN*