AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0927200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0927200 MtrunA17_Chr6g0485681 99.165 479 4 0 1 479 1 479 0.0 980
Msa0927200 MtrunA17_Chr5g0409271 31.579 171 101 5 8 175 3 160 1.20e-14 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0927200 AT3G24530.1 78.170 481 103 1 1 479 1 481 0.0 793
Msa0927200 AT3G24530.2 79.215 433 90 0 47 479 1 433 0.0 726
Msa0927200 AT3G24530.3 79.949 389 78 0 91 479 1 389 0.0 657
Msa0927200 AT4G19150.1 27.647 170 110 4 17 186 20 176 4.49e-11 63.5
Msa0927200 AT5G60070.1 31.217 189 118 7 17 203 112 290 6.50e-11 65.1

Find 131 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCATTCTCCTTCCTTCTT+TGG 0.158669 6_2:+71388505 None:intergenic
ATTCATTCATGTGCTCTTTC+AGG 0.163558 6_2:-71388260 Msa0927200:CDS
GATTAATGCAAGAGAAAATT+TGG 0.194417 6_2:-71382649 Msa0927200:CDS
GCAACCATTCTTTGGCAATT+AGG 0.236259 6_2:-71382535 Msa0927200:exon
TCTTTGGCAATTAGGTGTTT+TGG 0.238936 6_2:-71382527 Msa0927200:exon
ACAATAGGTGAATCCTTCTT+TGG 0.267190 6_2:-71382231 Msa0927200:three_prime_UTR
CAGCGAAACCAAAGCTAAAA+TGG 0.303855 6_2:-71383916 Msa0927200:CDS
CCTTTGTATCAACGCTTCTA+TGG 0.314985 6_2:+71382728 None:intergenic
ATGTTTCTGCAGGAAACAAT+AGG 0.317133 6_2:-71384899 Msa0927200:CDS
TTAGCACAGCAACCATTCTT+TGG 0.323710 6_2:-71382543 Msa0927200:CDS
AAATCAGATGATAAGGACTA+TGG 0.327406 6_2:-71383005 Msa0927200:CDS
GCAGAAGGTAGTTTGCTCTA+TGG 0.334627 6_2:-71382783 Msa0927200:CDS
ATTGTTCAATCTAGAGAAAT+AGG 0.336159 6_2:-71388550 None:intergenic
TCCCTAAGTTTATCATTTCC+AGG 0.339640 6_2:+71383993 None:intergenic
CACCTTTACACCTTGCAGTT+TGG 0.339947 6_2:-71384215 Msa0927200:CDS
TGAGATAGAGGCTAAGAATA+TGG 0.343681 6_2:-71384829 Msa0927200:intron
CACAAAACCTTTCCCAAAGA+AGG 0.356016 6_2:+71382218 None:intergenic
AAGGAACTTTCAAATATTGT+AGG 0.359061 6_2:-71383882 Msa0927200:CDS
GACAAACTCGCCAACTAAAT+CGG 0.369343 6_2:+71383638 None:intergenic
TTATCATCTGATTTCTGCAT+TGG 0.376034 6_2:+71383014 None:intergenic
GAAGCTATTACTCGTTTCAT+TGG 0.382036 6_2:+71382906 None:intergenic
ATAATTAATTAAAATACTTA+AGG 0.385823 6_2:+71382061 None:intergenic
TCAAAATCCACATTGAAATC+TGG 0.391184 6_2:+71382429 None:intergenic
ATGGCCTTTCTTGGGAATCC+TGG 0.392337 6_2:-71383753 Msa0927200:CDS
GCTCTTTCAGGTGACCTCAT+TGG 0.393937 6_2:-71388248 Msa0927200:CDS
TACAGTCAAAACTAAGTCTT+AGG 0.395011 6_2:+71382625 None:intergenic
TGAAAATACAACTACGAAAG+TGG 0.398331 6_2:-71383848 Msa0927200:CDS
GATTTAGTTGGCGAGTTTGT+CGG 0.410464 6_2:-71383636 Msa0927200:CDS
AAAATTGTAGTAATATTTGC+AGG 0.411416 6_2:-71382939 Msa0927200:CDS
AACTTAGGGAACTATTAAAC+TGG 0.411802 6_2:-71383980 Msa0927200:CDS
GGACTATGGGTTGGAAGCCT+TGG 0.414525 6_2:-71382991 Msa0927200:CDS
TGAATTGAGTTTGCCACAAT+AGG 0.414823 6_2:-71382246 Msa0927200:three_prime_UTR
ATCGGAGAGGGTTGAGATAG+AGG 0.417047 6_2:-71384841 Msa0927200:CDS
TTCTCTTGCATTAATCATCA+TGG 0.422736 6_2:+71382656 None:intergenic
CTCTATGGATTTAAGTTGCA+TGG 0.425673 6_2:-71382768 Msa0927200:CDS
CAATAGGTGAATCCTTCTTT+GGG 0.425740 6_2:-71382230 Msa0927200:three_prime_UTR
AAGGAAGGAGAATGGAAGAT+TGG 0.426741 6_2:-71388499 Msa0927200:five_prime_UTR
AAAATACTGAGCTTAAAATC+TGG 0.426750 6_2:-71382387 Msa0927200:three_prime_UTR
AATCATCTTTCGCAAGGCCC+TGG 0.426961 6_2:-71384011 Msa0927200:CDS
GATGAGAGGCGCAGAGCTCT+TGG 0.439509 6_2:-71383807 Msa0927200:CDS
CCCCTCATATGGCCTTTCTT+GGG 0.440544 6_2:-71383761 Msa0927200:CDS
AATGCAGTTAGCCACATTGA+TGG 0.445641 6_2:-71382475 Msa0927200:three_prime_UTR
TTGAGGAATTCACAATGAAC+AGG 0.447775 6_2:-71388322 Msa0927200:exon
GAAGATTTAGAAGCAGGTCT+TGG 0.451968 6_2:-71382570 Msa0927200:CDS
AATGCAGAAATCAGATGATA+AGG 0.455044 6_2:-71383012 Msa0927200:CDS
TAAAATGGATGAACTTGAAA+AGG 0.462730 6_2:-71383901 Msa0927200:CDS
TTCCCAAGAAAGGCCATATG+AGG 0.463525 6_2:+71383759 None:intergenic
TAAGGAAACAAATGGCGGTT+TGG 0.465248 6_2:-71382685 Msa0927200:CDS
ACATTGGAAGATTTAGAAGC+AGG 0.466998 6_2:-71382576 Msa0927200:CDS
TCCTGGAACAGGTAAAACTA+TGG 0.467198 6_2:-71383736 Msa0927200:CDS
TTCTAAATCTTCCAATGTAA+TGG 0.467879 6_2:+71382581 None:intergenic
GTATGTTATTCATTCTTATG+AGG 0.468503 6_2:-71382117 Msa0927200:three_prime_UTR
TTCTTTGCTGCCATGTGCAA+TGG 0.474026 6_2:+71384680 None:intergenic
CTATGGGTTGGAAGCCTTGG+AGG 0.474129 6_2:-71382988 Msa0927200:CDS
TTTCTTGGGAATCCTGGAAC+AGG 0.477449 6_2:-71383747 Msa0927200:CDS
TGTTTCTGCAGGAAACAATA+GGG 0.478049 6_2:-71384898 Msa0927200:CDS
TTGCACATGGCAGCAAAGAA+TGG 0.480265 6_2:-71384677 Msa0927200:CDS
CATACAAAGAATACAATGTA+AGG 0.481591 6_2:+71382135 None:intergenic
CCCTGGAAATGATAAACTTA+GGG 0.487476 6_2:-71383994 Msa0927200:CDS
AACACCTAATTGCCAAAGAA+TGG 0.492204 6_2:+71382531 None:intergenic
ACACCTCTTCATGTTTCTGC+AGG 0.492960 6_2:-71384909 Msa0927200:CDS
AGAGCTCTTGGTCTGCATGT+TGG 0.493864 6_2:-71383795 Msa0927200:CDS
GGTGAATCCTTCTTTGGGAA+AGG 0.497368 6_2:-71382225 Msa0927200:three_prime_UTR
ACTATGGTAGCACGCATCCT+TGG 0.502013 6_2:-71383720 Msa0927200:CDS
GCCCTGGAAATGATAAACTT+AGG 0.502459 6_2:-71383995 Msa0927200:CDS
GGCGAGTTTGTCGGTCATAC+CGG 0.502758 6_2:-71383627 Msa0927200:CDS
GCACATGAATGAATTGTAGC+TGG 0.511948 6_2:+71388269 None:intergenic
CCCTAAGTTTATCATTTCCA+GGG 0.515848 6_2:+71383994 None:intergenic
CGGTCCGAAAACGAGGAAGA+AGG 0.528809 6_2:-71383607 Msa0927200:intron
AGAACTTCTTACCATTACAT+TGG 0.531138 6_2:-71382592 Msa0927200:CDS
AAACAACGTAAGGAAACAAA+TGG 0.531773 6_2:-71382693 Msa0927200:CDS
TGCCAAAGAAGGAAGGAGAA+TGG 0.535346 6_2:-71388507 Msa0927200:five_prime_UTR
CCATAGAAGCGTTGATACAA+AGG 0.536377 6_2:-71382728 Msa0927200:CDS
AAAGAAGGATTCACCTATTG+TGG 0.542740 6_2:+71382233 None:intergenic
CCTTTGAATCATCTTTCGCA+AGG 0.544004 6_2:-71384017 Msa0927200:CDS
CCCAAGAAAGGCCATATGAG+GGG 0.545373 6_2:+71383761 None:intergenic
TTAGCCACATTGATGGCCGT+TGG 0.546394 6_2:-71382468 Msa0927200:three_prime_UTR
TCTTCTTGAGTGGCAAGGAT+CGG 0.546943 6_2:-71384859 Msa0927200:CDS
GTACAACGGACCGATTTAGT+TGG 0.547583 6_2:-71383648 Msa0927200:CDS
TAGTTAAATTTCTTCTTGAG+TGG 0.547620 6_2:-71384869 Msa0927200:CDS
GAGAGAGTTGATGCCAAAGA+AGG 0.548472 6_2:-71388518 Msa0927200:five_prime_UTR
AAATTTCTTCTTGAGTGGCA+AGG 0.549157 6_2:-71384864 Msa0927200:CDS
CATAGAAGCGTTGATACAAA+GGG 0.554281 6_2:-71382727 Msa0927200:CDS
AGATGATAAGGACTATGGGT+TGG 0.557956 6_2:-71383000 Msa0927200:CDS
TGTCTGACTGTACGACTGCA+CGG 0.558326 6_2:-71382333 Msa0927200:three_prime_UTR
TACAGATCCAAGAAGCAGAA+GGG 0.558979 6_2:-71383073 Msa0927200:intron
TGGCAAACTCAATTCATGAC+AGG 0.567570 6_2:+71382253 None:intergenic
GCAAGAGTAGGAATCGGAAT+CGG 0.568081 6_2:-71388464 Msa0927200:five_prime_UTR
ACTTCTGTCACTTTATCAGT+AGG 0.569855 6_2:+71383669 None:intergenic
GCACAGCTGCTTCTTGCACA+CGG 0.570174 6_2:-71384641 Msa0927200:CDS
AAGATGAACAATTTAGCAGA+AGG 0.570848 6_2:-71382798 Msa0927200:CDS
CAACTACGAAAGTGGGCGAA+AGG 0.572916 6_2:-71383840 Msa0927200:CDS
TGTTCCAGGATTCCCAAGAA+AGG 0.574363 6_2:+71383749 None:intergenic
TAATGCAGATTGCAGTGCTA+AGG 0.575210 6_2:-71384142 Msa0927200:CDS
GTCTGACTGTACGACTGCAC+GGG 0.576403 6_2:-71382332 Msa0927200:three_prime_UTR
AATCAGATGATAAGGACTAT+GGG 0.576919 6_2:-71383004 Msa0927200:CDS
GAAAATACAACTACGAAAGT+GGG 0.577609 6_2:-71383847 Msa0927200:CDS
GAGTTGATGCCAAAGAAGGA+AGG 0.580478 6_2:-71388514 Msa0927200:five_prime_UTR
ATTTGATGACGCGCAAGAGT+AGG 0.582689 6_2:-71388476 Msa0927200:five_prime_UTR
TGCCAAACTGCAAGGTGTAA+AGG 0.584464 6_2:+71384213 None:intergenic
TGACGCGCAAGAGTAGGAAT+CGG 0.591052 6_2:-71388470 Msa0927200:five_prime_UTR
CCTTGGAAGATTACTTCACA+TGG 0.591386 6_2:-71383703 Msa0927200:CDS
TGAACAGGTCTCAAGATCAA+AGG 0.592100 6_2:-71388307 Msa0927200:CDS
GGAGGAGATTATGTCTGTCA+TGG 0.595950 6_2:-71382970 Msa0927200:CDS
CCATGTGAAGTAATCTTCCA+AGG 0.599879 6_2:+71383703 None:intergenic
ATACAGATCCAAGAAGCAGA+AGG 0.600619 6_2:-71383074 Msa0927200:intron
TCCCAAGAAAGGCCATATGA+GGG 0.600997 6_2:+71383760 None:intergenic
TGAGTGGCAAGGATCGGAGA+GGG 0.606868 6_2:-71384853 Msa0927200:CDS
GGAAGATTACTTCACATGGT+GGG 0.609932 6_2:-71383699 Msa0927200:CDS
TTAATGAGTGCCAAACTGCA+AGG 0.610309 6_2:+71384205 None:intergenic
CCTTGCGAAAGATGATTCAA+AGG 0.611256 6_2:+71384017 None:intergenic
ACAGATCCAAGAAGCAGAAG+GGG 0.617047 6_2:-71383072 Msa0927200:intron
ACTATCTGATCTTGATCCAA+CGG 0.620328 6_2:+71382452 None:intergenic
ATTATGTCTGTCATGGACAG+TGG 0.622054 6_2:-71382963 Msa0927200:CDS
TTTCCTGCAGAAACATGAAG+AGG 0.623173 6_2:+71384906 None:intergenic
TGGAGAAACTCCATTGCACA+TGG 0.639498 6_2:-71384690 Msa0927200:CDS
TGGAAGATTACTTCACATGG+TGG 0.641918 6_2:-71383700 Msa0927200:CDS
CGAGTAATAGCTTCTAACGA+AGG 0.650852 6_2:-71382897 Msa0927200:CDS
GACAGACATAATCTCCTCCA+AGG 0.651577 6_2:+71382974 None:intergenic
AAGTTTGCAGCTGCACAATG+AGG 0.651812 6_2:-71382278 Msa0927200:three_prime_UTR
CCAAGAAAGGCCATATGAGG+GGG 0.655438 6_2:+71383762 None:intergenic
GGTCGTTGAATCAAGATAGA+CGG 0.655746 6_2:+71382363 None:intergenic
TTGAGTGGCAAGGATCGGAG+AGG 0.667286 6_2:-71384854 Msa0927200:CDS
TGATCCAACGGCCATCAATG+TGG 0.683749 6_2:+71382464 None:intergenic
CAGATCCAAGAAGCAGAAGG+GGG 0.685878 6_2:-71383071 Msa0927200:CDS
ATAAAGTGACAGAAGTACAA+CGG 0.702697 6_2:-71383662 Msa0927200:CDS
AGTCGTACAGTCAGACACAT+CGG 0.706754 6_2:+71382339 None:intergenic
CAACGTAAGGAAACAAATGG+CGG 0.727824 6_2:-71382690 Msa0927200:CDS
AGATAGTCCAGATTTCAATG+TGG 0.735798 6_2:-71382436 Msa0927200:three_prime_UTR
GTAGCTTCTGAAGACCAATG+AGG 0.740758 6_2:+71388234 None:intergenic
CGTACAGTCAGACACATCGG+TGG 0.769904 6_2:+71382342 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTAATTTAACAGAATT+TGG - chr6_2:71382650-71382669 Msa0927200:CDS 10.0%
!!! TCATTTGTTTTTTAATTTAA+TGG - chr6_2:71384483-71384502 Msa0927200:intron 10.0%
!!! TGATTCATTTTTTAATTTAA+TGG - chr6_2:71384903-71384922 Msa0927200:CDS 10.0%
!!! TGATACTATTTTTTTTTTTT+TGG - chr6_2:71388522-71388541 Msa0927200:five_prime_UTR 10.0%
!! AAATGAAGAAAAAAACAAAA+GGG + chr6_2:71382384-71382403 None:intergenic 15.0%
!! AAAATGAAGAAAAAAACAAA+AGG + chr6_2:71382385-71382404 None:intergenic 15.0%
!!! TCTTTTTTTTGTTATTGTTA+TGG - chr6_2:71382432-71382451 Msa0927200:three_prime_UTR 15.0%
!! ACTTTCTCAAATTATTATTA+CGG + chr6_2:71382793-71382812 None:intergenic 15.0%
!!! TTTCTTTTGATTAATGTATT+AGG + chr6_2:71382935-71382954 None:intergenic 15.0%
!! GAAAAAAAATTAGATCTTTA+TGG - chr6_2:71383077-71383096 Msa0927200:intron 15.0%
!!! TGAAAAAAATTAGATCTTTT+TGG - chr6_2:71383503-71383522 Msa0927200:intron 15.0%
!!! TGGTTCATTTTTTAATTTAA+TGG - chr6_2:71384304-71384323 Msa0927200:intron 15.0%
!! AAAAAAAAAGTAGATCTTTA+TGG - chr6_2:71384764-71384783 Msa0927200:intron 15.0%
!!! ATATACTTTTGTAATAACTT+GGG - chr6_2:71384858-71384877 Msa0927200:CDS 15.0%
!!! TTTCTTTTGATTAATGTATT+AGG + chr6_2:71382935-71382954 None:intergenic 15.0%
!!! TTATGTTTAAACTTTTTCAT+GGG - chr6_2:71385279-71385298 Msa0927200:intron 15.0%
!!! AATAAGTTGAAAACAAATTA+TGG - chr6_2:71386072-71386091 Msa0927200:intron 15.0%
!!! GCATAAAAATAATTTTTGTT+TGG + chr6_2:71386200-71386219 None:intergenic 15.0%
!!! CTTAAAAATGTCATTTTTAT+TGG - chr6_2:71387322-71387341 Msa0927200:intron 15.0%
!!! TGCTTTATTTTTTTAATTAC+TGG - chr6_2:71388376-71388395 Msa0927200:five_prime_UTR 15.0%
!!! TTTTCTTCATTTTGATCAAA+TGG - chr6_2:71382392-71382411 Msa0927200:three_prime_UTR 20.0%
!!! TTTCTTCATTTTGATCAAAT+GGG - chr6_2:71382393-71382412 Msa0927200:three_prime_UTR 20.0%
!!! TGCTTTAGTTTTGTAAAAAT+TGG - chr6_2:71382488-71382507 Msa0927200:three_prime_UTR 20.0%
!! TTGTAAAAATTGGATCTTTA+TGG - chr6_2:71382498-71382517 Msa0927200:three_prime_UTR 20.0%
!! AAATTGGAATTATGTGTATA+GGG - chr6_2:71382565-71382584 Msa0927200:CDS 20.0%
!! CTTTCTCAAATTATTATTAC+GGG + chr6_2:71382792-71382811 None:intergenic 20.0%
!! GTAATAATAATTTGAGAAAG+TGG - chr6_2:71382792-71382811 Msa0927200:CDS 20.0%
!! CAAGATCATACAAAAAAATT+TGG + chr6_2:71383047-71383066 None:intergenic 20.0%
!!! GTTTGATCTGATTTTTTTAA+AGG - chr6_2:71383213-71383232 Msa0927200:intron 20.0%
!! AAAACTTAAGCAAAATCATT+TGG + chr6_2:71384140-71384159 None:intergenic 20.0%
!!! TTTTGCTTAAGTTTTGAAAA+AGG - chr6_2:71384145-71384164 Msa0927200:CDS 20.0%
!!! TTAGATCTTTATGGTTTTTT+GGG - chr6_2:71384168-71384187 Msa0927200:CDS 20.0%
!! TTGAATATAATCACATATGT+TGG - chr6_2:71384642-71384661 Msa0927200:CDS 20.0%
!! TTTCTTATGAGAAAAAATGT+TGG - chr6_2:71384787-71384806 Msa0927200:intron 20.0%
!!! GATATACTTTTGTAATAACT+TGG - chr6_2:71384857-71384876 Msa0927200:CDS 20.0%
!!! TATACTTTTGTAATAACTTG+GGG - chr6_2:71384859-71384878 Msa0927200:CDS 20.0%
!! TAATTTAATGGAAGATTTGT+TGG - chr6_2:71384915-71384934 Msa0927200:CDS 20.0%
!! CTAACAATAATTTGAGAAAA+TGG - chr6_2:71385034-71385053 Msa0927200:intron 20.0%
!!! GTTATGTTTAAACTTTTTCA+TGG - chr6_2:71385278-71385297 Msa0927200:intron 20.0%
!! TTTATGTGACAAATATGTTA+AGG - chr6_2:71385361-71385380 Msa0927200:intron 20.0%
!! TTATGTGACAAATATGTTAA+GGG - chr6_2:71385362-71385381 Msa0927200:intron 20.0%
!!! ATCCTTTTTAATTTATTGCT+TGG - chr6_2:71385407-71385426 Msa0927200:intron 20.0%
!! TAACTAAAGGATAAATGAAA+TGG + chr6_2:71385959-71385978 None:intergenic 20.0%
!! TTCAACTATATTATTTGGAT+TGG + chr6_2:71386175-71386194 None:intergenic 20.0%
!!! TGGTTTTCAACTATATTATT+TGG + chr6_2:71386180-71386199 None:intergenic 20.0%
!!! TATATAAAGTTTGTTTCCAA+TGG - chr6_2:71386232-71386251 Msa0927200:intron 20.0%
!!! ATTATTGCTAAATAGCTTTT+TGG - chr6_2:71386444-71386463 Msa0927200:intron 20.0%
!!! AATGAATTTGGTTTTAAGAT+TGG + chr6_2:71387134-71387153 None:intergenic 20.0%
!! ATAAAGTTGACAAAAAATAG+TGG + chr6_2:71387191-71387210 None:intergenic 20.0%
!! AAAATTGTAGTAATATTTGC+AGG - chr6_2:71387595-71387614 Msa0927200:intron 20.0%
!!! TAATTCTTTCTTTTAGTTTG+TGG - chr6_2:71388446-71388465 Msa0927200:five_prime_UTR 20.0%
! CGTAAAATAATCTTACAACA+GGG + chr6_2:71382360-71382379 None:intergenic 25.0%
! TCGTAAAATAATCTTACAAC+AGG + chr6_2:71382361-71382380 None:intergenic 25.0%
! TAAAGCAAGATCAAACAAAA+GGG + chr6_2:71382475-71382494 None:intergenic 25.0%
! TGTGTTATGAATTGTGTATT+TGG - chr6_2:71382542-71382561 Msa0927200:CDS 25.0%
! TGAATTGTGTATTTGGAAAT+TGG - chr6_2:71382549-71382568 Msa0927200:CDS 25.0%
! GAAATTGGAATTATGTGTAT+AGG - chr6_2:71382564-71382583 Msa0927200:CDS 25.0%
! TTGAATCTAATCACATATGT+TGG - chr6_2:71382819-71382838 Msa0927200:CDS 25.0%
! TGCTTATTTGGTAAAAATGA+CGG + chr6_2:71383021-71383040 None:intergenic 25.0%
! AAAATTTGGAGATGCTTATT+TGG + chr6_2:71383033-71383052 None:intergenic 25.0%
! TCTGTAAGAAAAAATGTTCA+TGG - chr6_2:71383103-71383122 Msa0927200:intron 25.0%
! ATCTGTTTAGTAATAACTTG+TGG - chr6_2:71383177-71383196 Msa0927200:intron 25.0%
!!! AGATTTGTTGTTGTAATGAA+TGG - chr6_2:71383237-71383256 Msa0927200:intron 25.0%
! TTATTACTTACTAGCTATGA+AGG - chr6_2:71383296-71383315 Msa0927200:intron 25.0%
! ACCAGTAAAATTTGAGAAAA+TGG - chr6_2:71383344-71383363 Msa0927200:intron 25.0%
! ACATATTTCAATGTTCAATC+TGG - chr6_2:71383383-71383402 Msa0927200:intron 25.0%
! ATGATTATTCAGTGTATGTT+CGG + chr6_2:71384019-71384038 None:intergenic 25.0%
! TGAAAAAGGTTAGATCTTTA+TGG - chr6_2:71384159-71384178 Msa0927200:CDS 25.0%
!!! GTTAGATCTTTATGGTTTTT+TGG - chr6_2:71384167-71384186 Msa0927200:CDS 25.0%
! TTGTTTGTATTGTGAATTGA+GGG - chr6_2:71384204-71384223 Msa0927200:CDS 25.0%
!! TTAATCAAGAGTGTGTAATT+TGG - chr6_2:71384284-71384303 Msa0927200:intron 25.0%
! ATAAGCAAGATCATACAAAA+GGG + chr6_2:71384740-71384759 None:intergenic 25.0%
! AATAAGCAAGATCATACAAA+AGG + chr6_2:71384741-71384760 None:intergenic 25.0%
! ATGTTATGAACGATTAGATT+AGG - chr6_2:71384956-71384975 Msa0927200:intron 25.0%
!! TATTGTTAGTCTCAACATAT+CGG + chr6_2:71385023-71385042 None:intergenic 25.0%
! TTAGATGTAACTACATATGT+CGG - chr6_2:71385062-71385081 Msa0927200:intron 25.0%
!!! TTTAAACTTTTTCATGGGAA+GGG - chr6_2:71385284-71385303 Msa0927200:intron 25.0%
! AAATATGTTAAGGGATTGAA+GGG - chr6_2:71385371-71385390 Msa0927200:intron 25.0%
! TGCCAAGCAATAAATTAAAA+AGG + chr6_2:71385412-71385431 None:intergenic 25.0%
! TAGTTAAATTTCTTCTTGAG+TGG - chr6_2:71385665-71385684 Msa0927200:intron 25.0%
! AACTTCAGTAGAAAATTTGA+TGG + chr6_2:71385738-71385757 None:intergenic 25.0%
! TAAAATGGATGAACTTGAAA+AGG - chr6_2:71386633-71386652 Msa0927200:intron 25.0%
! AAGGAACTTTCAAATATTGT+AGG - chr6_2:71386652-71386671 Msa0927200:intron 25.0%
! AATACTGAATTGAACCTTAT+CGG - chr6_2:71387072-71387091 Msa0927200:intron 25.0%
! ATCTCTAATGTGTATCTATT+TGG - chr6_2:71387100-71387119 Msa0927200:intron 25.0%
! GTGATTCATTAGAATGAATT+TGG + chr6_2:71387146-71387165 None:intergenic 25.0%
! AAATGACGAAAGAAAATTCT+TGG + chr6_2:71387218-71387237 None:intergenic 25.0%
!! TTGAATCTTGAATCATTTTG+TGG - chr6_2:71387248-71387267 Msa0927200:intron 25.0%
! TTGGATCTGTATAAATAACA+TGG + chr6_2:71387452-71387471 None:intergenic 25.0%
! GATTAATGCAAGAGAAAATT+TGG - chr6_2:71387885-71387904 Msa0927200:intron 25.0%
!!! TAGTTTTGACTGTATAGATA+CGG - chr6_2:71387918-71387937 Msa0927200:intron 25.0%
! TTCTAAATCTTCCAATGTAA+TGG + chr6_2:71387956-71387975 None:intergenic 25.0%
!!! TTTTGGATTTTAGAGGAATT+CGG - chr6_2:71388024-71388043 Msa0927200:intron 25.0%
! AAAATACTGAGCTTAAAATC+TGG - chr6_2:71388147-71388166 Msa0927200:intron 25.0%
! CATACAAAGAATACAATGTA+AGG + chr6_2:71388402-71388421 None:intergenic 25.0%
! GTATGTTATTCATTCTTATG+AGG - chr6_2:71388417-71388436 Msa0927200:five_prime_UTR 25.0%
! TTTTGTCATTGAGAAGAGAA+GGG + chr6_2:71382336-71382355 None:intergenic 30.0%
! TTTTTGTCATTGAGAAGAGA+AGG + chr6_2:71382337-71382356 None:intergenic 30.0%
CTAAAGCAAGATCAAACAAA+AGG + chr6_2:71382476-71382495 None:intergenic 30.0%
! TCTGATTTTGTAATGACTTG+TGG - chr6_2:71382594-71382613 Msa0927200:CDS 30.0%
TTGTTGATGTATGTGATGAA+TGG - chr6_2:71382686-71382705 Msa0927200:CDS 30.0%
AGAAAAATGAGAGACAAACA+TGG - chr6_2:71382950-71382969 Msa0927200:CDS 30.0%
AAAAGGGTAATCTTACAACA+GGG + chr6_2:71382997-71383016 None:intergenic 30.0%
GCTTATTTGGTAAAAATGAC+GGG + chr6_2:71383020-71383039 None:intergenic 30.0%
TGTGTTTGTGTTGTGAATTA+AGG - chr6_2:71383127-71383146 Msa0927200:intron 30.0%
TGTGTTGTGAATTAAGGATT+TGG - chr6_2:71383133-71383152 Msa0927200:intron 30.0%
!! GCCATTTTCTCAAATTTTAC+TGG + chr6_2:71383348-71383367 None:intergenic 30.0%
AGTAAGCAAGATCATACAAA+AGG + chr6_2:71383480-71383499 None:intergenic 30.0%
TCTGTGAGAAATAATGTTGA+TGG - chr6_2:71383529-71383548 Msa0927200:intron 30.0%
AAAATGAAGGGTAACGAAAA+GGG + chr6_2:71384102-71384121 None:intergenic 30.0%
TAAAATGAAGGGTAACGAAA+AGG + chr6_2:71384103-71384122 None:intergenic 30.0%
! TACCCTTCATTTTACCAAAT+CGG - chr6_2:71384109-71384128 Msa0927200:intron 30.0%
GTTGTTTGTATTGTGAATTG+AGG - chr6_2:71384203-71384222 Msa0927200:CDS 30.0%
GAAATTGGAATTATGTGCAT+GGG - chr6_2:71384231-71384250 Msa0927200:intron 30.0%
TTCTTGATGTATGTGATGAA+TGG - chr6_2:71384511-71384530 Msa0927200:intron 30.0%
TCTCAAATTATTACTGCTGT+TGG + chr6_2:71384611-71384630 None:intergenic 30.0%
! TTTGTTGTGAATTGAGGATT+TGG - chr6_2:71384814-71384833 Msa0927200:intron 30.0%
TTGTTGGTGTATGTAATGAA+TGG - chr6_2:71384931-71384950 Msa0927200:intron 30.0%
AGGAATTCATTAGATCTTCA+AGG - chr6_2:71385248-71385267 Msa0927200:intron 30.0%
GGAATTCATTAGATCTTCAA+GGG - chr6_2:71385249-71385268 Msa0927200:intron 30.0%
GAATTCATTAGATCTTCAAG+GGG - chr6_2:71385250-71385269 Msa0927200:intron 30.0%
!!! GTTTAAACTTTTTCATGGGA+AGG - chr6_2:71385283-71385302 Msa0927200:intron 30.0%
ACATATTTGTCACATAAACC+CGG + chr6_2:71385359-71385378 None:intergenic 30.0%
CAAATATGTTAAGGGATTGA+AGG - chr6_2:71385370-71385389 Msa0927200:intron 30.0%
! AAACCTGTTTTATATGCAGA+TGG - chr6_2:71385597-71385616 Msa0927200:intron 30.0%
TACAATTATGAGACAATGAC+TGG + chr6_2:71385795-71385814 None:intergenic 30.0%
CTAAAGGATAAATGAAATGG+CGG + chr6_2:71385956-71385975 None:intergenic 30.0%
GACTATAAGCTCTTAACTAA+AGG + chr6_2:71385972-71385991 None:intergenic 30.0%
AACTTAGGGAACTATTAAAC+TGG - chr6_2:71386554-71386573 Msa0927200:intron 30.0%
!!! AAGTTCATCCATTTTAGCTT+TGG + chr6_2:71386629-71386648 None:intergenic 30.0%
TGAAAATACAACTACGAAAG+TGG - chr6_2:71386686-71386705 Msa0927200:intron 30.0%
GAAAATACAACTACGAAAGT+GGG - chr6_2:71386687-71386706 Msa0927200:intron 30.0%
! ATAAAGTGACAGAAGTACAA+CGG - chr6_2:71386872-71386891 Msa0927200:intron 30.0%
TGAAATTCCTTTACTCTTAC+AGG - chr6_2:71386964-71386983 Msa0927200:intron 30.0%
ATTAGAGATTCATACCGATA+AGG + chr6_2:71387089-71387108 None:intergenic 30.0%
TTATCATCTGATTTCTGCAT+TGG + chr6_2:71387523-71387542 None:intergenic 30.0%
AATGCAGAAATCAGATGATA+AGG - chr6_2:71387522-71387541 Msa0927200:intron 30.0%
AAATCAGATGATAAGGACTA+TGG - chr6_2:71387529-71387548 Msa0927200:intron 30.0%
AATCAGATGATAAGGACTAT+GGG - chr6_2:71387530-71387549 Msa0927200:intron 30.0%
AAGATGAACAATTTAGCAGA+AGG - chr6_2:71387736-71387755 Msa0927200:intron 30.0%
!!! TGTTTCCTTACGTTGTTTTT+CGG + chr6_2:71387839-71387858 None:intergenic 30.0%
AAACAACGTAAGGAAACAAA+TGG - chr6_2:71387841-71387860 Msa0927200:intron 30.0%
TTCTCTTGCATTAATCATCA+TGG + chr6_2:71387881-71387900 None:intergenic 30.0%
TACAGTCAAAACTAAGTCTT+AGG + chr6_2:71387912-71387931 None:intergenic 30.0%
AGAACTTCTTACCATTACAT+TGG - chr6_2:71387942-71387961 Msa0927200:intron 30.0%
!! TTAGGTGTTTTGGATTTTAG+AGG - chr6_2:71388017-71388036 Msa0927200:intron 30.0%
TCAAAATCCACATTGAAATC+TGG + chr6_2:71388108-71388127 None:intergenic 30.0%
TTGAGGAATTCACAATGAAC+AGG - chr6_2:71382212-71382231 Msa0927200:three_prime_UTR 35.0%
ATTCATTCATGTGCTCTTTC+AGG - chr6_2:71382274-71382293 Msa0927200:three_prime_UTR 35.0%
TCTATGTAGCACAGATACTT+CGG + chr6_2:71382853-71382872 None:intergenic 35.0%
AAGTATCTGTGCTACATAGA+GGG - chr6_2:71382853-71382872 Msa0927200:CDS 35.0%
GAAAAGGGTAATCTTACAAC+AGG + chr6_2:71382998-71383017 None:intergenic 35.0%
! TGGTAAAAATGACGGGAAAA+GGG + chr6_2:71383013-71383032 None:intergenic 35.0%
! TTGGTAAAAATGACGGGAAA+AGG + chr6_2:71383014-71383033 None:intergenic 35.0%
! AGGATTTGGAATGATGTGTA+TGG - chr6_2:71383147-71383166 Msa0927200:intron 35.0%
! GGATTTGGAATGATGTGTAT+GGG - chr6_2:71383148-71383167 Msa0927200:intron 35.0%
! GGATTTGGAATGATGTGTAA+GGG - chr6_2:71383568-71383587 Msa0927200:intron 35.0%
TATCGTGTGTCTTAATCAAG+AGG - chr6_2:71383611-71383630 Msa0927200:CDS 35.0%
ATCGTGTGTCTTAATCAAGA+GGG - chr6_2:71383612-71383631 Msa0927200:CDS 35.0%
ACAAAATCACGTGTAAACTG+TGG - chr6_2:71383971-71383990 Msa0927200:CDS 35.0%
AAAAGGGTGATCTTACAACA+GGG + chr6_2:71384086-71384105 None:intergenic 35.0%
!! CACCGATTTGGTAAAATGAA+GGG + chr6_2:71384114-71384133 None:intergenic 35.0%
!! ACACCGATTTGGTAAAATGA+AGG + chr6_2:71384115-71384134 None:intergenic 35.0%
TGTATTGTGAATTGAGGGTT+TGG - chr6_2:71384209-71384228 Msa0927200:CDS 35.0%
TGAATTGAGGGTTTGGAAAT+TGG - chr6_2:71384216-71384235 Msa0927200:CDS 35.0%
GGAAATTGGAATTATGTGCA+TGG - chr6_2:71384230-71384249 Msa0927200:intron 35.0%
!! GGTGTTTTTGTTGTGAATTG+AGG - chr6_2:71384808-71384827 Msa0927200:intron 35.0%
CTATGCTTGTACTCTTTCAA+CGG - chr6_2:71385152-71385171 Msa0927200:intron 35.0%
TTCAACCTATTCAAAACCCA+AGG + chr6_2:71385227-71385246 None:intergenic 35.0%
GTTTCTCTTTGCTCATCATT+TGG - chr6_2:71385318-71385337 Msa0927200:intron 35.0%
CGTGACATAGTTATTGATCT+TGG - chr6_2:71385472-71385491 Msa0927200:intron 35.0%
ACATAGTTATTGATCTTGGC+TGG - chr6_2:71385476-71385495 Msa0927200:intron 35.0%
CTTCATGCTTATCTTACTCT+AGG - chr6_2:71385540-71385559 Msa0927200:intron 35.0%
! ATGTTTCTGCAGGAAACAAT+AGG - chr6_2:71385635-71385654 Msa0927200:intron 35.0%
! TGTTTCTGCAGGAAACAATA+GGG - chr6_2:71385636-71385655 Msa0927200:intron 35.0%
AAATTTCTTCTTGAGTGGCA+AGG - chr6_2:71385670-71385689 Msa0927200:intron 35.0%
TGAGATAGAGGCTAAGAATA+TGG - chr6_2:71385705-71385724 Msa0927200:intron 35.0%
ATAGAGGCTAAGAATATGGT+AGG - chr6_2:71385709-71385728 Msa0927200:intron 35.0%
! ACTGTTTTCACAAGTCATCT+TGG - chr6_2:71386037-71386056 Msa0927200:intron 35.0%
AAGCATTTGTGAGTCTGTTA+GGG + chr6_2:71386127-71386146 None:intergenic 35.0%
TAAGCATTTGTGAGTCTGTT+AGG + chr6_2:71386128-71386147 None:intergenic 35.0%
! AATGCCTTTTTCTTGCAGAA+TGG - chr6_2:71386291-71386310 Msa0927200:intron 35.0%
CATACCATTCTGCAAGAAAA+AGG + chr6_2:71386298-71386317 None:intergenic 35.0%
!! ATAGCTTTTTGGTCAAATCG+TGG - chr6_2:71386455-71386474 Msa0927200:intron 35.0%
CCCTAAGTTTATCATTTCCA+GGG + chr6_2:71386543-71386562 None:intergenic 35.0%
CCCTGGAAATGATAAACTTA+GGG - chr6_2:71386540-71386559 Msa0927200:intron 35.0%
TCCCTAAGTTTATCATTTCC+AGG + chr6_2:71386544-71386563 None:intergenic 35.0%
!! ACTTCTGTCACTTTATCAGT+AGG + chr6_2:71386868-71386887 None:intergenic 35.0%
AATGTAGCCTGTAAGAGTAA+AGG + chr6_2:71386974-71386993 None:intergenic 35.0%
TTACAGGCTACATTTGCTTT+CGG - chr6_2:71386980-71386999 Msa0927200:intron 35.0%
! GAAACTAGACTTGTTTGCAT+TGG - chr6_2:71387008-71387027 Msa0927200:intron 35.0%
TTGACTGTACTAAGTTTAGG+CGG + chr6_2:71387168-71387187 None:intergenic 35.0%
TGGTTGACTGTACTAAGTTT+AGG + chr6_2:71387171-71387190 None:intergenic 35.0%
GAAGCTATTACTCGTTTCAT+TGG + chr6_2:71387631-71387650 None:intergenic 35.0%
!!! CGATTTTAGTTCAACAGAAC+TGG - chr6_2:71387696-71387715 Msa0927200:intron 35.0%
!! CTCTATGGATTTAAGTTGCA+TGG - chr6_2:71387766-71387785 Msa0927200:intron 35.0%
!! CATAGAAGCGTTGATACAAA+GGG - chr6_2:71387807-71387826 Msa0927200:intron 35.0%
AACAACCGAAAAACAACGTA+AGG - chr6_2:71387831-71387850 Msa0927200:intron 35.0%
ACATTGGAAGATTTAGAAGC+AGG - chr6_2:71387958-71387977 Msa0927200:intron 35.0%
AACACCTAATTGCCAAAGAA+TGG + chr6_2:71388006-71388025 None:intergenic 35.0%
! TCTTTGGCAATTAGGTGTTT+TGG - chr6_2:71388007-71388026 Msa0927200:intron 35.0%
ACTATCTGATCTTGATCCAA+CGG + chr6_2:71388085-71388104 None:intergenic 35.0%
AGATAGTCCAGATTTCAATG+TGG - chr6_2:71388098-71388117 Msa0927200:intron 35.0%
TGAATTGAGTTTGCCACAAT+AGG - chr6_2:71388288-71388307 Msa0927200:CDS 35.0%
AAAGAAGGATTCACCTATTG+TGG + chr6_2:71388304-71388323 None:intergenic 35.0%
ACAATAGGTGAATCCTTCTT+TGG - chr6_2:71388303-71388322 Msa0927200:CDS 35.0%
CAATAGGTGAATCCTTCTTT+GGG - chr6_2:71388304-71388323 Msa0927200:CDS 35.0%
TTCCATTCTCCTTCCTTCTT+TGG + chr6_2:71382032-71382051 None:intergenic 40.0%
AAGGAAGGAGAATGGAAGAT+TGG - chr6_2:71382035-71382054 Msa0927200:three_prime_UTR 40.0%
TGAACAGGTCTCAAGATCAA+AGG - chr6_2:71382227-71382246 Msa0927200:three_prime_UTR 40.0%
!!! TGAATTGTAGCTGGTTTTGC+AGG + chr6_2:71382259-71382278 None:intergenic 40.0%
GCACATGAATGAATTGTAGC+TGG + chr6_2:71382268-71382287 None:intergenic 40.0%
! TGACTTGTGGCTTAATCAAC+AGG - chr6_2:71382607-71382626 Msa0927200:CDS 40.0%
GACTTGTGGCTTAATCAACA+GGG - chr6_2:71382608-71382627 Msa0927200:CDS 40.0%
! GAAGTATCTGTGCTACATAG+AGG - chr6_2:71382852-71382871 Msa0927200:CDS 40.0%
! TGTGTTCTGAATTGCGGATT+TGG - chr6_2:71383553-71383572 Msa0927200:intron 40.0%
! CGGATTTGGAATGATGTGTA+AGG - chr6_2:71383567-71383586 Msa0927200:intron 40.0%
ACCACTTCCTCAAATTTCAC+CGG + chr6_2:71383797-71383816 None:intergenic 40.0%
! TCTGAAACGTTAGTGCTACA+TGG - chr6_2:71383847-71383866 Msa0927200:CDS 40.0%
! AGTTTTGCCAAGTGTATGCT+TGG - chr6_2:71383877-71383896 Msa0927200:CDS 40.0%
TGTGAATCCAAGCATACACT+TGG + chr6_2:71383887-71383906 None:intergenic 40.0%
GAAAAGGGTGATCTTACAAC+AGG + chr6_2:71384087-71384106 None:intergenic 40.0%
! ATCATTTGGAGACACCGATT+TGG + chr6_2:71384126-71384145 None:intergenic 40.0%
!! ATCTGGTTGGTAATAACTCG+TGG - chr6_2:71384260-71384279 Msa0927200:intron 40.0%
TCAGCATTGTTAGTAACTCG+TGG - chr6_2:71384435-71384454 Msa0927200:intron 40.0%
! AGGATTTGGAATGATGCGTA+TGG - chr6_2:71384828-71384847 Msa0927200:intron 40.0%
! GGATTTGGAATGATGCGTAT+GGG - chr6_2:71384829-71384848 Msa0927200:intron 40.0%
AACTTGGGGCTTAATGAACA+TGG - chr6_2:71384873-71384892 Msa0927200:CDS 40.0%
AGAAAAATGAGAGACGAGCA+CGG - chr6_2:71385199-71385218 Msa0927200:intron 40.0%
!!! GGGTTTTGAATAGGTTGAAG+AGG - chr6_2:71385228-71385247 Msa0927200:intron 40.0%
! CATGGGAAGGGATATTTTGT+TGG - chr6_2:71385296-71385315 Msa0927200:intron 40.0%
TTGGCATGCATATGTAGTCA+TGG - chr6_2:71385426-71385445 Msa0927200:intron 40.0%
AACTATGTCACGCAGTTTCA+AGG + chr6_2:71385464-71385483 None:intergenic 40.0%
GCTGGTCGATCTCAAATTAA+TGG - chr6_2:71385494-71385513 Msa0927200:intron 40.0%
GTGCCATCTGCATATAAAAC+AGG + chr6_2:71385603-71385622 None:intergenic 40.0%
TTTCCTGCAGAAACATGAAG+AGG + chr6_2:71385631-71385650 None:intergenic 40.0%
TTTGTATCACGTCTGCAGTA+TGG - chr6_2:71385824-71385843 Msa0927200:intron 40.0%
! GTGTTAAGGTGTCATACCAT+TGG + chr6_2:71386251-71386270 None:intergenic 40.0%
TTAATGAGTGCCAAACTGCA+AGG + chr6_2:71386332-71386351 None:intergenic 40.0%
TAATGCAGATTGCAGTGCTA+AGG - chr6_2:71386392-71386411 Msa0927200:intron 40.0%
GCTTAAAGCCTATGAATTGC+AGG - chr6_2:71386483-71386502 Msa0927200:intron 40.0%
TAAAGCCTATGAATTGCAGG+AGG - chr6_2:71386486-71386505 Msa0927200:intron 40.0%
AAAGCCTATGAATTGCAGGA+GGG - chr6_2:71386487-71386506 Msa0927200:intron 40.0%
CCTTGCGAAAGATGATTCAA+AGG + chr6_2:71386520-71386539 None:intergenic 40.0%
CCTTTGAATCATCTTTCGCA+AGG - chr6_2:71386517-71386536 Msa0927200:intron 40.0%
GCCCTGGAAATGATAAACTT+AGG - chr6_2:71386539-71386558 Msa0927200:intron 40.0%
CAGCGAAACCAAAGCTAAAA+TGG - chr6_2:71386618-71386637 Msa0927200:intron 40.0%
TCCTGGAACAGGTAAAACTA+TGG - chr6_2:71386798-71386817 Msa0927200:intron 40.0%
!! ACCATAGTTTTACCTGTTCC+AGG + chr6_2:71386802-71386821 None:intergenic 40.0%
CCATGTGAAGTAATCTTCCA+AGG + chr6_2:71386834-71386853 None:intergenic 40.0%
CCTTGGAAGATTACTTCACA+TGG - chr6_2:71386831-71386850 Msa0927200:intron 40.0%
TGGAAGATTACTTCACATGG+TGG - chr6_2:71386834-71386853 Msa0927200:intron 40.0%
GGAAGATTACTTCACATGGT+GGG - chr6_2:71386835-71386854 Msa0927200:intron 40.0%
GACAAACTCGCCAACTAAAT+CGG + chr6_2:71386899-71386918 None:intergenic 40.0%
GATTTAGTTGGCGAGTTTGT+CGG - chr6_2:71386898-71386917 Msa0927200:intron 40.0%
! CATACCTTCTTCCTCGTTTT+CGG + chr6_2:71386934-71386953 None:intergenic 40.0%
ATACAGATCCAAGAAGCAGA+AGG - chr6_2:71387460-71387479 Msa0927200:intron 40.0%
TACAGATCCAAGAAGCAGAA+GGG - chr6_2:71387461-71387480 Msa0927200:intron 40.0%
AGATGATAAGGACTATGGGT+TGG - chr6_2:71387534-71387553 Msa0927200:intron 40.0%
ATTATGTCTGTCATGGACAG+TGG - chr6_2:71387571-71387590 Msa0927200:intron 40.0%
CGAGTAATAGCTTCTAACGA+AGG - chr6_2:71387637-71387656 Msa0927200:intron 40.0%
CCTTTGTATCAACGCTTCTA+TGG + chr6_2:71387809-71387828 None:intergenic 40.0%
!! CCATAGAAGCGTTGATACAA+AGG - chr6_2:71387806-71387825 Msa0927200:intron 40.0%
CAACGTAAGGAAACAAATGG+CGG - chr6_2:71387844-71387863 Msa0927200:intron 40.0%
TAAGGAAACAAATGGCGGTT+TGG - chr6_2:71387849-71387868 Msa0927200:intron 40.0%
GAAGATTTAGAAGCAGGTCT+TGG - chr6_2:71387964-71387983 Msa0927200:intron 40.0%
TTAGCACAGCAACCATTCTT+TGG - chr6_2:71387991-71388010 Msa0927200:intron 40.0%
GCAACCATTCTTTGGCAATT+AGG - chr6_2:71387999-71388018 Msa0927200:intron 40.0%
AATGCAGTTAGCCACATTGA+TGG - chr6_2:71388059-71388078 Msa0927200:intron 40.0%
GGTCGTTGAATCAAGATAGA+CGG + chr6_2:71388174-71388193 None:intergenic 40.0%
TGGCAAACTCAATTCATGAC+AGG + chr6_2:71388284-71388303 None:intergenic 40.0%
CACAAAACCTTTCCCAAAGA+AGG + chr6_2:71388319-71388338 None:intergenic 40.0%
!! GAGAGAGTTGATGCCAAAGA+AGG - chr6_2:71382016-71382035 Msa0927200:three_prime_UTR 45.0%
!! GAGTTGATGCCAAAGAAGGA+AGG - chr6_2:71382020-71382039 Msa0927200:three_prime_UTR 45.0%
TGCCAAAGAAGGAAGGAGAA+TGG - chr6_2:71382027-71382046 Msa0927200:three_prime_UTR 45.0%
!! ATTTGATGACGCGCAAGAGT+AGG - chr6_2:71382058-71382077 Msa0927200:three_prime_UTR 45.0%
GCAAGAGTAGGAATCGGAAT+CGG - chr6_2:71382070-71382089 Msa0927200:three_prime_UTR 45.0%
ATTCCTCAAGAGAGAGAGAG+AGG + chr6_2:71382201-71382220 None:intergenic 45.0%
! GTAGCTTCTGAAGACCAATG+AGG + chr6_2:71382303-71382322 None:intergenic 45.0%
AGAGACAAACATGGTGCCTT+GGG - chr6_2:71382959-71382978 Msa0927200:CDS 45.0%
AGGGTTTCTCTCAAAACCCA+AGG + chr6_2:71382978-71382997 None:intergenic 45.0%
! GATGGCTGTGTTCTGAATTG+CGG - chr6_2:71383547-71383566 Msa0927200:intron 45.0%
ACCGGTGAAATTTGAGGAAG+TGG - chr6_2:71383793-71383812 Msa0927200:CDS 45.0%
AAGCTGCAAAGTGTAGCTTC+TGG + chr6_2:71383949-71383968 None:intergenic 45.0%
TCAGTGTATGTTCGGATCAG+TGG + chr6_2:71384011-71384030 None:intergenic 45.0%
ATGTGCATGGGTTTCAGATC+TGG - chr6_2:71384243-71384262 Msa0927200:intron 45.0%
GGAATGATGCGTATGGGATT+CGG - chr6_2:71384835-71384854 Msa0927200:CDS 45.0%
!!! TTGGTTTTTTTTCGCCTCGC+CGG - chr6_2:71385337-71385356 Msa0927200:intron 45.0%
TATGTCACGCAGTTTCAAGG+TGG + chr6_2:71385461-71385480 None:intergenic 45.0%
! ACACCTCTTCATGTTTCTGC+AGG - chr6_2:71385625-71385644 Msa0927200:intron 45.0%
TCTTCTTGAGTGGCAAGGAT+CGG - chr6_2:71385675-71385694 Msa0927200:intron 45.0%
TGGAGAAACTCCATTGCACA+TGG - chr6_2:71385844-71385863 Msa0927200:intron 45.0%
TTCTTTGCTGCCATGTGCAA+TGG + chr6_2:71385857-71385876 None:intergenic 45.0%
TTGCACATGGCAGCAAAGAA+TGG - chr6_2:71385857-71385876 Msa0927200:intron 45.0%
CACCTTAACACCTTGCAGTT+TGG - chr6_2:71386260-71386279 Msa0927200:intron 45.0%
! TGCCAAACTGCAAGGTGTTA+AGG + chr6_2:71386265-71386284 None:intergenic 45.0%
TTTGTGAGTGCCAAACTGCA+AGG + chr6_2:71386273-71386292 None:intergenic 45.0%
CACCTTTACACCTTGCAGTT+TGG - chr6_2:71386319-71386338 Msa0927200:intron 45.0%
TGCCAAACTGCAAGGTGTAA+AGG + chr6_2:71386324-71386343 None:intergenic 45.0%
CATTCCCTCCTGCAATTCAT+AGG + chr6_2:71386494-71386513 None:intergenic 45.0%
! AAGGCATGCTTTTGGATGAG+AGG - chr6_2:71386713-71386732 Msa0927200:intron 45.0%
TCCCAAGAAAGGCCATATGA+GGG + chr6_2:71386777-71386796 None:intergenic 45.0%
TTCCCAAGAAAGGCCATATG+AGG + chr6_2:71386778-71386797 None:intergenic 45.0%
TGTTCCAGGATTCCCAAGAA+AGG + chr6_2:71386788-71386807 None:intergenic 45.0%
TTTCTTGGGAATCCTGGAAC+AGG - chr6_2:71386787-71386806 Msa0927200:intron 45.0%
! GTACAACGGACCGATTTAGT+TGG - chr6_2:71386886-71386905 Msa0927200:intron 45.0%
ACAGATCCAAGAAGCAGAAG+GGG - chr6_2:71387462-71387481 Msa0927200:intron 45.0%
GACAGACATAATCTCCTCCA+AGG + chr6_2:71387563-71387582 None:intergenic 45.0%
GGAGGAGATTATGTCTGTCA+TGG - chr6_2:71387564-71387583 Msa0927200:intron 45.0%
! CTAACGAAGGCTTTTGCAGA+CGG - chr6_2:71387650-71387669 Msa0927200:intron 45.0%
! TAACGAAGGCTTTTGCAGAC+GGG - chr6_2:71387651-71387670 Msa0927200:intron 45.0%
!! GCAGAAGGTAGTTTGCTCTA+TGG - chr6_2:71387751-71387770 Msa0927200:intron 45.0%
AGTCGTACAGTCAGACACAT+CGG + chr6_2:71388198-71388217 None:intergenic 45.0%
AAGTTTGCAGCTGCACAATG+AGG - chr6_2:71388256-71388275 Msa0927200:CDS 45.0%
! GGTGAATCCTTCTTTGGGAA+AGG - chr6_2:71388309-71388328 Msa0927200:CDS 45.0%
!! ATAATTAATTAAAATACTTA+AGG + chr6_2:71388476-71388495 None:intergenic 5.0%
!!! AATTAATTATTTTACTTTTA+TGG - chr6_2:71388486-71388505 Msa0927200:five_prime_UTR 5.0%
TGACGCGCAAGAGTAGGAAT+CGG - chr6_2:71382064-71382083 Msa0927200:three_prime_UTR 50.0%
CAACCTCTCTCTCTCTCTTG+AGG - chr6_2:71382195-71382214 Msa0927200:three_prime_UTR 50.0%
! GCTCTTTCAGGTGACCTCAT+TGG - chr6_2:71382286-71382305 Msa0927200:three_prime_UTR 50.0%
GAGAGACAAACATGGTGCCT+TGG - chr6_2:71382958-71382977 Msa0927200:CDS 50.0%
TGAAGCACATACACGACCCT+AGG - chr6_2:71383758-71383777 Msa0927200:CDS 50.0%
!! GTTGGCACCGGTGAAATTTG+AGG - chr6_2:71383787-71383806 Msa0927200:CDS 50.0%
TGTAGCTTCTGGCGAAATCG+CGG + chr6_2:71383938-71383957 None:intergenic 50.0%
GTTCGGATCAGTGGTGAGTT+TGG + chr6_2:71384002-71384021 None:intergenic 50.0%
GCATGGGTTTCAGATCTGGT+TGG - chr6_2:71384247-71384266 Msa0927200:intron 50.0%
! CTGAAGTGTCAGTGCTGCAT+AGG - chr6_2:71384673-71384692 Msa0927200:CDS 50.0%
!!! CGGTGCCTTGGGTTTTGAAT+AGG - chr6_2:71385219-71385238 Msa0927200:intron 50.0%
!!! TGGTTTTTTTTCGCCTCGCC+GGG - chr6_2:71385338-71385357 Msa0927200:intron 50.0%
TTTGTCACATAAACCCGGCG+AGG + chr6_2:71385354-71385373 None:intergenic 50.0%
ATCGGAGAGGGTTGAGATAG+AGG - chr6_2:71385693-71385712 Msa0927200:intron 50.0%
AATCATCTTTCGCAAGGCCC+TGG - chr6_2:71386523-71386542 Msa0927200:intron 50.0%
CAACTACGAAAGTGGGCGAA+AGG - chr6_2:71386694-71386713 Msa0927200:intron 50.0%
AGAGCTCTTGGTCTGCATGT+TGG - chr6_2:71386739-71386758 Msa0927200:intron 50.0%
CCAAGAAAGGCCATATGAGG+GGG + chr6_2:71386775-71386794 None:intergenic 50.0%
CCCAAGAAAGGCCATATGAG+GGG + chr6_2:71386776-71386795 None:intergenic 50.0%
CCCCTCATATGGCCTTTCTT+GGG - chr6_2:71386773-71386792 Msa0927200:intron 50.0%
ATGGCCTTTCTTGGGAATCC+TGG - chr6_2:71386781-71386800 Msa0927200:intron 50.0%
ACTATGGTAGCACGCATCCT+TGG - chr6_2:71386814-71386833 Msa0927200:intron 50.0%
! CTTCTTCCTCGTTTTCGGAC+CGG + chr6_2:71386929-71386948 None:intergenic 50.0%
CAGATCCAAGAAGCAGAAGG+GGG - chr6_2:71387463-71387482 Msa0927200:intron 50.0%
GAATTCCCCCTTCTGCTTCT+TGG + chr6_2:71387471-71387490 None:intergenic 50.0%
! TTAGCCACATTGATGGCCGT+TGG - chr6_2:71388066-71388085 Msa0927200:intron 50.0%
TGATCCAACGGCCATCAATG+TGG + chr6_2:71388073-71388092 None:intergenic 50.0%
TGTCTGACTGTACGACTGCA+CGG - chr6_2:71388201-71388220 Msa0927200:CDS 50.0%
TTGAGTGGCAAGGATCGGAG+AGG - chr6_2:71385680-71385699 Msa0927200:intron 55.0%
TGAGTGGCAAGGATCGGAGA+GGG - chr6_2:71385681-71385700 Msa0927200:intron 55.0%
GCACAGCTGCTTCTTGCACA+CGG - chr6_2:71385893-71385912 Msa0927200:intron 55.0%
!! GTGGGCGAAAGGCATGCTTT+TGG - chr6_2:71386705-71386724 Msa0927200:intron 55.0%
CACAAGACGACCCCCTCATA+TGG - chr6_2:71386762-71386781 Msa0927200:intron 55.0%
CCCCCTCATATGGCCTTTCT+TGG - chr6_2:71386772-71386791 Msa0927200:intron 55.0%
GGCGAGTTTGTCGGTCATAC+CGG - chr6_2:71386907-71386926 Msa0927200:intron 55.0%
GTCATACCGGTCCGAAAACG+AGG - chr6_2:71386920-71386939 Msa0927200:intron 55.0%
CGGTCCGAAAACGAGGAAGA+AGG - chr6_2:71386927-71386946 Msa0927200:intron 55.0%
!! GGACTATGGGTTGGAAGCCT+TGG - chr6_2:71387543-71387562 Msa0927200:intron 55.0%
!! CTATGGGTTGGAAGCCTTGG+AGG - chr6_2:71387546-71387565 Msa0927200:intron 55.0%
CGTACAGTCAGACACATCGG+TGG + chr6_2:71388195-71388214 None:intergenic 55.0%
GTCTGACTGTACGACTGCAC+GGG - chr6_2:71388202-71388221 Msa0927200:CDS 55.0%
CACGACCCTAGGAGACACGT+TGG - chr6_2:71383769-71383788 Msa0927200:CDS 60.0%
! CGGTGCCAACGTGTCTCCTA+GGG + chr6_2:71383777-71383796 None:intergenic 60.0%
CCTAGGAGACACGTTGGCAC+CGG - chr6_2:71383775-71383794 Msa0927200:CDS 60.0%
AGAGACGAGCACGGTGCCTT+GGG - chr6_2:71385208-71385227 Msa0927200:intron 60.0%
! GATGAGAGGCGCAGAGCTCT+TGG - chr6_2:71386727-71386746 Msa0927200:intron 60.0%
! CCGGTGCCAACGTGTCTCCT+AGG + chr6_2:71383778-71383797 None:intergenic 65.0%
GAGAGACGAGCACGGTGCCT+TGG - chr6_2:71385207-71385226 Msa0927200:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 71381995 71388561 71381995 ID=Msa0927200;Name=Msa0927200
chr6_2 mRNA 71381995 71388561 71381995 ID=Msa0927200-mRNA-1;Parent=Msa0927200;Name=Msa0927200-mRNA-1;_AED=0.01;_eAED=0.01;_QI=231|1|1|1|1|1|6|541|485
chr6_2 exon 71381995 71383090 71381995 ID=Msa0927200-mRNA-1:exon:11863;Parent=Msa0927200-mRNA-1
chr6_2 exon 71383608 71384051 71383608 ID=Msa0927200-mRNA-1:exon:11862;Parent=Msa0927200-mRNA-1
chr6_2 exon 71384137 71384247 71384137 ID=Msa0927200-mRNA-1:exon:11861;Parent=Msa0927200-mRNA-1
chr6_2 exon 71384616 71384714 71384616 ID=Msa0927200-mRNA-1:exon:11860;Parent=Msa0927200-mRNA-1
chr6_2 exon 71384830 71384940 71384830 ID=Msa0927200-mRNA-1:exon:11859;Parent=Msa0927200-mRNA-1
chr6_2 exon 71388193 71388561 71388193 ID=Msa0927200-mRNA-1:exon:11858;Parent=Msa0927200-mRNA-1
chr6_2 five_prime_UTR 71388331 71388561 71388331 ID=Msa0927200-mRNA-1:five_prime_utr;Parent=Msa0927200-mRNA-1
chr6_2 CDS 71388193 71388330 71388193 ID=Msa0927200-mRNA-1:cds;Parent=Msa0927200-mRNA-1
chr6_2 CDS 71384830 71384940 71384830 ID=Msa0927200-mRNA-1:cds;Parent=Msa0927200-mRNA-1
chr6_2 CDS 71384616 71384714 71384616 ID=Msa0927200-mRNA-1:cds;Parent=Msa0927200-mRNA-1
chr6_2 CDS 71384137 71384247 71384137 ID=Msa0927200-mRNA-1:cds;Parent=Msa0927200-mRNA-1
chr6_2 CDS 71383608 71384051 71383608 ID=Msa0927200-mRNA-1:cds;Parent=Msa0927200-mRNA-1
chr6_2 CDS 71382536 71383090 71382536 ID=Msa0927200-mRNA-1:cds;Parent=Msa0927200-mRNA-1
chr6_2 three_prime_UTR 71381995 71382535 71381995 ID=Msa0927200-mRNA-1:three_prime_utr;Parent=Msa0927200-mRNA-1
Gene Sequence

>Msa0927200

ATGAACAGGTCTCAAGATCAAAGGTCAAGACCTGCAAAACCAGCTACAATTCATTCATGTGCTCTTTCAGGTGACCTCATTGGTCTTCAGAAGCTACTTCGTGATAACCCTTCTCTTCTCAATGACAAAAACCCTGTTATGGCACACACACCTCTTCATGTTTCTGCAGGAAACAATAGGGCTGACATAGTTAAATTTCTTCTTGAGTGGCAAGGATCGGAGAGGGTTGAGATAGAGGCTAAGAATATGTATGGAGAAACTCCATTGCACATGGCAGCAAAGAATGGATGTAGTGAAGCTGCACAGCTGCTTCTTGCACACGGCGCTATTATTGAAGCTAGAGCAAATAATGGTATGACACCTTTACACCTTGCAGTTTGGCACTCATTAAGAGCAGAAGAATTCTTAACTGTGAAAACATTGCTTGAGCATAATGCAGATTGCAGTGCTAAGGACAATGAGGGAATGACGCCTTTGAATCATCTTTCGCAAGGCCCTGGAAATGATAAACTTAGGGAACTATTAAACTGGCATCTTGAAGAGCAGAGAAAGAAGCGAGCTATTAAAGCGTGCAGCGAAACCAAAGCTAAAATGGATGAACTTGAAAAGGAACTTTCAAATATTGTAGGTCTTAATGATCTGAAAATACAACTACGAAAGTGGGCGAAAGGCATGCTTTTGGATGAGAGGCGCAGAGCTCTTGGTCTGCATGTTGGCACAAGACGACCCCCTCATATGGCCTTTCTTGGGAATCCTGGAACAGGTAAAACTATGGTAGCACGCATCCTTGGAAGATTACTTCACATGGTGGGAATTCTACCTACTGATAAAGTGACAGAAGTACAACGGACCGATTTAGTTGGCGAGTTTGTCGGTCATACCGGTCCGAAAACGAGGAAGAAGATCCAAGAAGCAGAAGGGGGAATTCTTTTTGTCGACGAAGCTTATAGACTGATACCAATGCAGAAATCAGATGATAAGGACTATGGGTTGGAAGCCTTGGAGGAGATTATGTCTGTCATGGACAGTGGAAAAATTGTAGTAATATTTGCAGGCTACAGCGAACCAATGAAACGAGTAATAGCTTCTAACGAAGGCTTTTGCAGACGGGTGACTAAGTTTTTTCATTTTATCGATTTTAGTTCAACAGAACTGGCAACAATTCTTCACATCAAGATGAACAATTTAGCAGAAGGTAGTTTGCTCTATGGATTTAAGTTGCATGGCAATTGCAGTATAAAAGCCATAGAAGCGTTGATACAAAGGGAAACAACCGAAAAACAACGTAAGGAAACAAATGGCGGTTTGGTAGATACCATGATGATTAATGCAAGAGAAAATTTGGACCTAAGACTTAGTTTTGACTGTATAGATACGGAAGAACTTCTTACCATTACATTGGAAGATTTAGAAGCAGGTCTTGGCTTTTTAGCACAGCAACCATTCTTTGGCAATTAG
Protein sequence

>Msa0927200

MNRSQDQRSRPAKPATIHSCALSGDLIGLQKLLRDNPSLLNDKNPVMAHTPLHVSAGNNRADIVKFLLEWQGSERVEIEAKNMYGETPLHMAAKNGCSEAAQLLLAHGAIIEARANNGMTPLHLAVWHSLRAEEFLTVKTLLEHNADCSAKDNEGMTPLNHLSQGPGNDKLRELLNWHLEEQRKKRAIKACSETKAKMDELEKELSNIVGLNDLKIQLRKWAKGMLLDERRRALGLHVGTRRPPHMAFLGNPGTGKTMVARILGRLLHMVGILPTDKVTEVQRTDLVGEFVGHTGPKTRKKIQEAEGGILFVDEAYRLIPMQKSDDKDYGLEALEEIMSVMDSGKIVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFIDFSSTELATILHIKMNNLAEGSLLYGFKLHGNCSIKAIEALIQRETTEKQRKETNGGLVDTMMINARENLDLRLSFDCIDTEELLTITLEDLEAGLGFLAQQPFFGN*